Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990570 | XP_039682923.1 | 71.667 | 420 | 54 | 4 | 1 | 364 | 7 | 417 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990570 | sp|Q8L9Y3|ARR14_ARATH | 33.730 | 252 | 98 | 4 | 7 | 189 | 6 | 257 | 9.33e-35 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990570 | A0A396HGD5 | 71.667 | 420 | 54 | 4 | 1 | 364 | 7 | 417 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0990570 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990570 | MtrunA17_Chr6g0471041 | 71.667 | 420 | 54 | 4 | 1 | 364 | 7 | 417 | 0.0 | 582 |
| Msa0990570 | MtrunA17_Chr4g0009851 | 38.796 | 299 | 131 | 6 | 5 | 262 | 8 | 295 | 1.57e-50 | 171 |
| Msa0990570 | MtrunA17_Chr4g0009981 | 42.035 | 226 | 109 | 6 | 48 | 262 | 28 | 242 | 2.48e-41 | 145 |
| Msa0990570 | MtrunA17_Chr1g0161431 | 35.769 | 260 | 96 | 3 | 7 | 198 | 10 | 266 | 5.47e-41 | 152 |
| Msa0990570 | MtrunA17_Chr4g0009901 | 39.241 | 237 | 108 | 3 | 8 | 210 | 10 | 244 | 1.13e-40 | 144 |
| Msa0990570 | MtrunA17_Chr8g0383961 | 38.577 | 267 | 101 | 7 | 1 | 232 | 7 | 245 | 7.77e-36 | 131 |
| Msa0990570 | MtrunA17_Chr4g0067981 | 33.992 | 253 | 105 | 4 | 7 | 198 | 30 | 281 | 5.41e-34 | 132 |
| Msa0990570 | MtrunA17_Chr2g0294911 | 33.871 | 248 | 104 | 4 | 7 | 195 | 28 | 274 | 2.50e-33 | 130 |
| Msa0990570 | MtrunA17_Chr3g0123131 | 33.071 | 254 | 98 | 5 | 6 | 192 | 11 | 259 | 3.88e-32 | 127 |
| Msa0990570 | MtrunA17_Chr8g0376881 | 35.223 | 247 | 96 | 7 | 8 | 192 | 25 | 269 | 6.98e-32 | 125 |
| Msa0990570 | MtrunA17_Chr4g0074411 | 30.108 | 279 | 131 | 6 | 6 | 221 | 16 | 293 | 1.40e-26 | 111 |
| Msa0990570 | MtrunA17_Chr3g0137101 | 32.129 | 249 | 103 | 6 | 7 | 189 | 7 | 255 | 1.80e-26 | 110 |
| Msa0990570 | MtrunA17_Chr4g0009991 | 44.915 | 118 | 60 | 2 | 67 | 181 | 1 | 116 | 1.14e-24 | 97.4 |
| Msa0990570 | MtrunA17_Chr4g0074401 | 29.317 | 249 | 114 | 4 | 6 | 192 | 15 | 263 | 1.23e-24 | 105 |
| Msa0990570 | MtrunA17_Chr7g0275401 | 30.769 | 247 | 108 | 6 | 7 | 190 | 4 | 250 | 1.64e-23 | 99.0 |
| Msa0990570 | MtrunA17_Chr8g0391911 | 30.579 | 242 | 107 | 4 | 12 | 192 | 13 | 254 | 1.28e-22 | 95.9 |
| Msa0990570 | MtrunA17_Chr1g0149841 | 30.488 | 246 | 107 | 5 | 7 | 189 | 4 | 248 | 2.43e-22 | 98.2 |
| Msa0990570 | MtrunA17_Chr2g0304841 | 26.538 | 260 | 120 | 7 | 2 | 190 | 12 | 271 | 3.83e-21 | 95.1 |
| Msa0990570 | MtrunA17_Chr4g0074421 | 33.333 | 150 | 76 | 2 | 56 | 181 | 33 | 182 | 1.24e-20 | 88.6 |
| Msa0990570 | MtrunA17_Chr3g0134481 | 27.570 | 214 | 89 | 3 | 1 | 181 | 1 | 181 | 3.47e-19 | 84.3 |
| Msa0990570 | MtrunA17_Chr3g0134461 | 29.493 | 217 | 96 | 4 | 1 | 183 | 1 | 194 | 4.97e-19 | 84.3 |
| Msa0990570 | MtrunA17_Chr1g0149831 | 33.987 | 153 | 69 | 3 | 66 | 189 | 33 | 182 | 9.92e-18 | 81.3 |
| Msa0990570 | MtrunA17_Chr6g0473731 | 32.653 | 147 | 79 | 3 | 56 | 188 | 11 | 151 | 1.08e-17 | 84.0 |
| Msa0990570 | MtrunA17_Chr1g0149851 | 26.119 | 268 | 119 | 5 | 7 | 196 | 4 | 270 | 6.96e-17 | 82.0 |
| Msa0990570 | MtrunA17_Chr7g0275891 | 28.016 | 257 | 110 | 7 | 7 | 188 | 4 | 260 | 9.21e-17 | 80.5 |
| Msa0990570 | MtrunA17_Chr4g0011071 | 40.351 | 114 | 62 | 2 | 47 | 156 | 61 | 172 | 5.34e-16 | 75.5 |
| Msa0990570 | MtrunA17_Chr4g0031961 | 50.704 | 71 | 32 | 1 | 131 | 201 | 130 | 197 | 3.70e-15 | 75.5 |
| Msa0990570 | MtrunA17_Chr7g0255711 | 52.381 | 63 | 30 | 0 | 131 | 193 | 90 | 152 | 7.38e-15 | 74.3 |
| Msa0990570 | MtrunA17_Chr5g0417521 | 54.545 | 55 | 24 | 1 | 132 | 185 | 15 | 69 | 3.67e-12 | 67.0 |
| Msa0990570 | MtrunA17_Chr4g0054981 | 35.955 | 89 | 52 | 1 | 97 | 185 | 280 | 363 | 5.68e-12 | 67.0 |
| Msa0990570 | MtrunA17_Chr5g0400241 | 47.273 | 55 | 29 | 0 | 131 | 185 | 310 | 364 | 9.41e-12 | 66.2 |
| Msa0990570 | MtrunA17_Chr1g0198601 | 51.667 | 60 | 28 | 1 | 131 | 189 | 210 | 269 | 9.77e-12 | 65.9 |
| Msa0990570 | MtrunA17_Chr4g0042451 | 50.909 | 55 | 26 | 1 | 132 | 185 | 17 | 71 | 3.54e-11 | 63.9 |
| Msa0990570 | MtrunA17_Chr6g0461641 | 48.214 | 56 | 28 | 1 | 132 | 186 | 42 | 97 | 5.62e-11 | 63.5 |
| Msa0990570 | MtrunA17_Chr7g0261911 | 30.357 | 112 | 77 | 1 | 79 | 189 | 209 | 320 | 6.03e-11 | 63.5 |
| Msa0990570 | MtrunA17_Chr5g0422621 | 49.180 | 61 | 30 | 1 | 131 | 190 | 197 | 257 | 9.05e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990570 | AT2G01760.1 | 33.730 | 252 | 98 | 4 | 7 | 189 | 6 | 257 | 9.48e-36 | 134 |
| Msa0990570 | AT2G01760.2 | 34.978 | 223 | 76 | 4 | 36 | 189 | 63 | 285 | 3.14e-31 | 122 |
| Msa0990570 | AT3G16857.1 | 29.818 | 275 | 111 | 6 | 2 | 195 | 27 | 300 | 3.41e-29 | 119 |
| Msa0990570 | AT3G16857.2 | 29.818 | 275 | 111 | 6 | 2 | 195 | 27 | 300 | 3.80e-29 | 119 |
| Msa0990570 | AT1G67710.1 | 35.060 | 251 | 98 | 8 | 11 | 197 | 10 | 259 | 4.56e-29 | 118 |
| Msa0990570 | AT2G01760.3 | 38.462 | 169 | 69 | 3 | 56 | 189 | 24 | 192 | 7.03e-29 | 114 |
| Msa0990570 | AT2G25180.1 | 30.159 | 252 | 117 | 4 | 1 | 194 | 7 | 257 | 1.22e-24 | 105 |
| Msa0990570 | AT1G67710.3 | 39.535 | 172 | 74 | 4 | 56 | 197 | 14 | 185 | 1.32e-24 | 104 |
| Msa0990570 | AT3G16857.3 | 32.086 | 187 | 80 | 3 | 56 | 195 | 44 | 230 | 3.34e-24 | 104 |
| Msa0990570 | AT1G67710.2 | 38.953 | 172 | 75 | 4 | 56 | 197 | 23 | 194 | 4.05e-24 | 103 |
| Msa0990570 | AT4G31920.1 | 30.833 | 240 | 119 | 5 | 7 | 199 | 12 | 251 | 1.10e-22 | 99.8 |
| Msa0990570 | AT5G58080.1 | 28.980 | 245 | 118 | 4 | 7 | 195 | 13 | 257 | 2.52e-22 | 99.0 |
| Msa0990570 | AT3G62670.1 | 32.086 | 187 | 95 | 7 | 34 | 190 | 90 | 274 | 3.51e-18 | 85.9 |
| Msa0990570 | AT1G49190.1 | 28.497 | 193 | 100 | 6 | 34 | 189 | 85 | 276 | 1.97e-16 | 80.5 |
| Msa0990570 | AT3G46640.2 | 52.113 | 71 | 31 | 1 | 131 | 201 | 143 | 210 | 5.94e-16 | 78.2 |
| Msa0990570 | AT3G46640.1 | 52.113 | 71 | 31 | 1 | 131 | 201 | 143 | 210 | 5.94e-16 | 78.2 |
| Msa0990570 | AT5G59570.2 | 41.000 | 100 | 58 | 1 | 95 | 194 | 105 | 203 | 6.07e-16 | 77.8 |
| Msa0990570 | AT5G59570.1 | 41.000 | 100 | 58 | 1 | 95 | 194 | 105 | 203 | 6.07e-16 | 77.8 |
| Msa0990570 | AT3G46640.3 | 52.113 | 71 | 31 | 1 | 131 | 201 | 143 | 210 | 8.43e-16 | 77.8 |
| Msa0990570 | AT5G49240.1 | 25.424 | 236 | 113 | 6 | 8 | 181 | 38 | 272 | 1.79e-15 | 76.6 |
| Msa0990570 | AT5G07210.1 | 52.459 | 61 | 29 | 0 | 129 | 189 | 227 | 287 | 4.51e-15 | 77.0 |
| Msa0990570 | AT5G07210.2 | 52.459 | 61 | 29 | 0 | 129 | 189 | 219 | 279 | 4.51e-15 | 77.0 |
| Msa0990570 | AT5G05090.1 | 55.932 | 59 | 26 | 0 | 131 | 189 | 80 | 138 | 5.93e-15 | 74.7 |
| Msa0990570 | AT2G40970.1 | 54.237 | 59 | 27 | 0 | 131 | 189 | 104 | 162 | 6.22e-15 | 74.3 |
| Msa0990570 | AT3G10760.1 | 55.932 | 59 | 26 | 0 | 131 | 189 | 104 | 162 | 7.14e-15 | 75.5 |
| Msa0990570 | AT2G27070.1 | 50.820 | 61 | 30 | 0 | 129 | 189 | 222 | 282 | 9.92e-14 | 72.8 |
| Msa0990570 | AT3G04030.1 | 53.571 | 56 | 25 | 1 | 132 | 186 | 45 | 100 | 7.62e-12 | 66.6 |
| Msa0990570 | AT3G04030.3 | 53.571 | 56 | 25 | 1 | 132 | 186 | 45 | 100 | 8.69e-12 | 66.2 |
| Msa0990570 | AT3G04030.2 | 50.909 | 55 | 27 | 0 | 132 | 186 | 45 | 99 | 1.02e-11 | 66.2 |
| Msa0990570 | AT5G18240.2 | 53.571 | 56 | 25 | 1 | 132 | 186 | 45 | 100 | 1.25e-11 | 65.9 |
| Msa0990570 | AT5G18240.3 | 53.571 | 56 | 25 | 1 | 132 | 186 | 45 | 100 | 1.25e-11 | 65.9 |
| Msa0990570 | AT5G18240.5 | 53.571 | 56 | 25 | 1 | 132 | 186 | 45 | 100 | 1.34e-11 | 65.9 |
| Msa0990570 | AT5G18240.1 | 53.571 | 56 | 25 | 1 | 132 | 186 | 45 | 100 | 1.38e-11 | 65.9 |
| Msa0990570 | AT5G18240.4 | 53.571 | 56 | 25 | 1 | 132 | 186 | 45 | 100 | 1.38e-11 | 65.9 |
| Msa0990570 | AT5G44190.1 | 48.148 | 54 | 28 | 0 | 131 | 184 | 146 | 199 | 1.96e-11 | 65.5 |
| Msa0990570 | AT5G44190.2 | 48.148 | 54 | 28 | 0 | 131 | 184 | 146 | 199 | 2.17e-11 | 65.1 |
Find 50 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTTTAATTGTCTGTTTA+AGG | 0.079749 | 6_4:-52531602 | Msa0990570:CDS |
| CACTCTTGCTTTCTTCCCTT+TGG | 0.242204 | 6_4:-52533698 | Msa0990570:five_prime_UTR |
| CAATGCATCAAGAATTTCTA+AGG | 0.275756 | 6_4:-52532926 | Msa0990570:CDS |
| GCATATTGCTAGCCATTTAC+AGG | 0.279083 | 6_4:-52532730 | Msa0990570:intron |
| TCCACAACATTCATCAAAAT+TGG | 0.291775 | 6_4:-52531848 | Msa0990570:CDS |
| CATCAGACTGATCAGTAAAA+AGG | 0.315666 | 6_4:+52531911 | None:intergenic |
| GGACTGATCAGTAAAATTAT+TGG | 0.322179 | 6_4:+52531645 | None:intergenic |
| AAAAGAAACTCATGTTGATA+TGG | 0.344142 | 6_4:-52533006 | Msa0990570:CDS |
| GATCAAATTCATGTTGATAA+TGG | 0.375219 | 6_4:-52533032 | Msa0990570:CDS |
| CTAAGGGCTGTGAATCAGTT+TGG | 0.378849 | 6_4:-52532909 | Msa0990570:CDS |
| CTTCCTACTGAAACACAATT+AGG | 0.403491 | 6_4:-52532042 | Msa0990570:CDS |
| ATTCAAGTGATGAATGTTCC+TGG | 0.409770 | 6_4:-52532765 | Msa0990570:CDS |
| AACGATGGCATTATGGATAG+TGG | 0.418605 | 6_4:+52533600 | None:intergenic |
| CTATGAAGGCTATTGCAAAC+GGG | 0.418613 | 6_4:-52533148 | Msa0990570:CDS |
| GCTATGAAGGCTATTGCAAA+CGG | 0.428459 | 6_4:-52533149 | Msa0990570:CDS |
| TTTGGCTCTTTCAACTGAGA+TGG | 0.429518 | 6_4:-52533680 | Msa0990570:exon |
| TTAGGCCGTCTAAGAATTGT+TGG | 0.445891 | 6_4:+52533647 | None:intergenic |
| TAGGCCGTCTAAGAATTGTT+GGG | 0.453307 | 6_4:+52533648 | None:intergenic |
| TATGCAGTGATGGGTGTTGA+TGG | 0.456558 | 6_4:-52533185 | Msa0990570:intron |
| AGACTGAGCAGTAAAATTGT+TGG | 0.459077 | 6_4:+52531735 | None:intergenic |
| AATTGAGACTTACTTTAAAG+AGG | 0.462807 | 6_4:-52532140 | Msa0990570:CDS |
| TCGATGAATGTTGTGGTGAA+TGG | 0.464279 | 6_4:+52531944 | None:intergenic |
| TTCAAAACATTAGACTGATC+AGG | 0.466345 | 6_4:+52531814 | None:intergenic |
| TTATTGTCACATTGTATGAC+AGG | 0.466387 | 6_4:+52531970 | None:intergenic |
| TTGCTTGAGACCATGTTAAA+CGG | 0.467130 | 6_4:+52532946 | None:intergenic |
| GGCAAAGAATCTTACTATCA+AGG | 0.473824 | 6_4:+52532886 | None:intergenic |
| ATCAACAAGTGCAGCTATGA+AGG | 0.487052 | 6_4:-52533162 | Msa0990570:CDS |
| GATCAATCACAAGAACCTTT+AGG | 0.516587 | 6_4:+52533629 | None:intergenic |
| ACAATTCTTAGACGGCCTAA+AGG | 0.517558 | 6_4:-52533644 | Msa0990570:CDS |
| GGCTCTTTCAACTGAGATGG+AGG | 0.523762 | 6_4:-52533677 | Msa0990570:exon |
| ATGAAAAGCCAAAAGGTAAG+TGG | 0.529920 | 6_4:-52532092 | Msa0990570:CDS |
| TCAATTGGATGGGATTTCAA+AGG | 0.530454 | 6_4:-52533571 | Msa0990570:intron |
| TTAAAGAATGAAAAGCCAAA+AGG | 0.534779 | 6_4:-52532099 | Msa0990570:CDS |
| CTTCCCCAACAATTCTTAGA+CGG | 0.540784 | 6_4:-52533652 | Msa0990570:CDS |
| GTAAAATTGTTGGTAAATGT+CGG | 0.544091 | 6_4:+52531745 | None:intergenic |
| CTCATCACCTGGATTCATGT+TGG | 0.553676 | 6_4:+52531624 | None:intergenic |
| AGACCTAATTGTGTTTCAGT+AGG | 0.555876 | 6_4:+52532039 | None:intergenic |
| ATCTCAGTTGAAAGAGCCAA+AGG | 0.561457 | 6_4:+52533682 | None:intergenic |
| TTGATTAGGTCATCACTCAA+AGG | 0.569533 | 6_4:+52533104 | None:intergenic |
| GATCAGTCCAACATGAATCC+AGG | 0.574425 | 6_4:-52531631 | Msa0990570:CDS |
| CAATTAAAGAACTCATCACC+TGG | 0.578441 | 6_4:+52531613 | None:intergenic |
| ACATGTGCAAACATGTTCCA+AGG | 0.586197 | 6_4:-52533079 | Msa0990570:CDS |
| TCTCAGTTGAAAGAGCCAAA+GGG | 0.599286 | 6_4:+52533683 | None:intergenic |
| AGGCCGTCTAAGAATTGTTG+GGG | 0.604607 | 6_4:+52533649 | None:intergenic |
| GCAAATATCGATGAATGTTG+TGG | 0.607587 | 6_4:+52531937 | None:intergenic |
| AAAAGAAGCATTAGAGCATG+TGG | 0.613637 | 6_4:+52533422 | None:intergenic |
| AATGCATCAAGAATTTCTAA+GGG | 0.619626 | 6_4:-52532925 | Msa0990570:CDS |
| ATATGCTCTCTTGTCAAACC+AGG | 0.644357 | 6_4:+52532747 | None:intergenic |
| GCGAATGTCGATGAATGTTG+TGG | 0.682254 | 6_4:+52531667 | None:intergenic |
| TATGAAGGCTATTGCAAACG+GGG | 0.700349 | 6_4:-52533147 | Msa0990570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCATGTTTTAAATATTT+TGG | + | chr6_4:52532851-52532870 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAACAGTA+CGG | + | chr6_4:52533051-52533070 | None:intergenic | 10.0% |
| !!! | AAATCATGTTTTAAATATTT+TGG | + | chr6_4:52532851-52532870 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAACAGTA+CGG | + | chr6_4:52533051-52533070 | None:intergenic | 10.0% |
| !! | TAAAAGAAAAGAAAAATAAG+TGG | + | chr6_4:52532448-52532467 | None:intergenic | 15.0% |
| !!! | ATCACTTGAATAATTTTTTT+TGG | + | chr6_4:52532536-52532555 | None:intergenic | 15.0% |
| !!! | GTTTGTTTTTTAGATTAATT+TGG | - | chr6_4:52532602-52532621 | Msa0990570:intron | 15.0% |
| !!! | ATTGAAAATTTGATAGATTT+TGG | - | chr6_4:52532691-52532710 | Msa0990570:intron | 15.0% |
| !!! | TTGAAAATTTGATAGATTTT+GGG | - | chr6_4:52532692-52532711 | Msa0990570:intron | 15.0% |
| !! | AAAAAAAAAAAAAACAGTAC+GGG | + | chr6_4:52533050-52533069 | None:intergenic | 15.0% |
| !! | TAAAAGAAAAGAAAAATAAG+TGG | + | chr6_4:52532448-52532467 | None:intergenic | 15.0% |
| !!! | ATCACTTGAATAATTTTTTT+TGG | + | chr6_4:52532536-52532555 | None:intergenic | 15.0% |
| !!! | GTTTGTTTTTTAGATTAATT+TGG | - | chr6_4:52532602-52532621 | Msa0990570:intron | 15.0% |
| !!! | ATTGAAAATTTGATAGATTT+TGG | - | chr6_4:52532691-52532710 | Msa0990570:intron | 15.0% |
| !!! | TTGAAAATTTGATAGATTTT+GGG | - | chr6_4:52532692-52532711 | Msa0990570:intron | 15.0% |
| !! | AAAAAAAAAAAAAACAGTAC+GGG | + | chr6_4:52533050-52533069 | None:intergenic | 15.0% |
| ! | TATATGTTCTTACTAATGAC+AGG | + | chr6_4:52532031-52532050 | None:intergenic | 25.0% |
| !! | TTTTCATTCAAAACTTTCCT+TGG | + | chr6_4:52532251-52532270 | None:intergenic | 25.0% |
| !! | GATCAAATTCATGTTGATAA+TGG | - | chr6_4:52532278-52532297 | Msa0990570:intron | 25.0% |
| ! | AAAAGAAACTCATGTTGATA+TGG | - | chr6_4:52532304-52532323 | Msa0990570:intron | 25.0% |
| !!! | TTAAACGGTTCTTTTTTGTT+GGG | + | chr6_4:52532352-52532371 | None:intergenic | 25.0% |
| ! | AATGCATCAAGAATTTCTAA+GGG | - | chr6_4:52532385-52532404 | Msa0990570:intron | 25.0% |
| !!! | GTTTTGCATCTGAAATATAA+GGG | + | chr6_4:52532514-52532533 | None:intergenic | 25.0% |
| ! | CTAAAAAACAAACCTGTAAA+TGG | + | chr6_4:52532595-52532614 | None:intergenic | 25.0% |
| ! | TGAATGTATGTTATTAGCAA+AGG | - | chr6_4:52532796-52532815 | Msa0990570:intron | 25.0% |
| ! | ATTTGATACACCAAAAGAAT+TGG | - | chr6_4:52532964-52532983 | Msa0990570:CDS | 25.0% |
| !! | AATTGAGACTTACTTTAAAG+AGG | - | chr6_4:52533170-52533189 | Msa0990570:CDS | 25.0% |
| ! | TTAAAGAATGAAAAGCCAAA+AGG | - | chr6_4:52533211-52533230 | Msa0990570:intron | 25.0% |
| ! | TAAGTGGAAAAAATCAAATC+AGG | - | chr6_4:52533234-52533253 | Msa0990570:intron | 25.0% |
| !!! | TTAACATTTTGATCAAGTTC+TGG | + | chr6_4:52533316-52533335 | None:intergenic | 25.0% |
| !! | GTAAAATTGTTGGTAAATGT+CGG | + | chr6_4:52533568-52533587 | None:intergenic | 25.0% |
| ! | GTTCTTTAATTGTCTGTTTA+AGG | - | chr6_4:52533708-52533727 | Msa0990570:five_prime_UTR | 25.0% |
| ! | TATATGTTCTTACTAATGAC+AGG | + | chr6_4:52532031-52532050 | None:intergenic | 25.0% |
| !! | TTTTCATTCAAAACTTTCCT+TGG | + | chr6_4:52532251-52532270 | None:intergenic | 25.0% |
| !! | GATCAAATTCATGTTGATAA+TGG | - | chr6_4:52532278-52532297 | Msa0990570:intron | 25.0% |
| ! | AAAAGAAACTCATGTTGATA+TGG | - | chr6_4:52532304-52532323 | Msa0990570:intron | 25.0% |
| !!! | TTAAACGGTTCTTTTTTGTT+GGG | + | chr6_4:52532352-52532371 | None:intergenic | 25.0% |
| ! | AATGCATCAAGAATTTCTAA+GGG | - | chr6_4:52532385-52532404 | Msa0990570:intron | 25.0% |
| !!! | GTTTTGCATCTGAAATATAA+GGG | + | chr6_4:52532514-52532533 | None:intergenic | 25.0% |
| ! | CTAAAAAACAAACCTGTAAA+TGG | + | chr6_4:52532595-52532614 | None:intergenic | 25.0% |
| ! | TGAATGTATGTTATTAGCAA+AGG | - | chr6_4:52532796-52532815 | Msa0990570:intron | 25.0% |
| ! | ATTTGATACACCAAAAGAAT+TGG | - | chr6_4:52532964-52532983 | Msa0990570:CDS | 25.0% |
| !! | AATTGAGACTTACTTTAAAG+AGG | - | chr6_4:52533170-52533189 | Msa0990570:CDS | 25.0% |
| ! | TTAAAGAATGAAAAGCCAAA+AGG | - | chr6_4:52533211-52533230 | Msa0990570:intron | 25.0% |
| ! | TAAGTGGAAAAAATCAAATC+AGG | - | chr6_4:52533234-52533253 | Msa0990570:intron | 25.0% |
| !!! | TTAACATTTTGATCAAGTTC+TGG | + | chr6_4:52533316-52533335 | None:intergenic | 25.0% |
| !! | GTAAAATTGTTGGTAAATGT+CGG | + | chr6_4:52533568-52533587 | None:intergenic | 25.0% |
| ! | GTTCTTTAATTGTCTGTTTA+AGG | - | chr6_4:52533708-52533727 | Msa0990570:five_prime_UTR | 25.0% |
| !! | ATTTTTCAACGATGGCATTA+TGG | + | chr6_4:52531720-52531739 | None:intergenic | 30.0% |
| !! | TCCAATTGATTTTTCAACGA+TGG | + | chr6_4:52531728-52531747 | None:intergenic | 30.0% |
| TCGTTGAAAAATCAATTGGA+TGG | - | chr6_4:52531728-52531747 | Msa0990570:CDS | 30.0% | |
| CGTTGAAAAATCAATTGGAT+GGG | - | chr6_4:52531729-52531748 | Msa0990570:CDS | 30.0% | |
| !!! | TTTTGCATTGACTCTTTTGA+GGG | - | chr6_4:52531907-52531926 | Msa0990570:CDS | 30.0% |
| !! | AATTTGTTGGAGAAAATCCT+AGG | + | chr6_4:52531990-52532009 | None:intergenic | 30.0% |
| !! | TGATTTGTTGGGTAATTTGT+TGG | + | chr6_4:52532003-52532022 | None:intergenic | 30.0% |
| !! | GACAGGAATATTGATTTGTT+GGG | + | chr6_4:52532014-52532033 | None:intergenic | 30.0% |
| !! | TGACAGGAATATTGATTTGT+TGG | + | chr6_4:52532015-52532034 | None:intergenic | 30.0% |
| !! | GTTTGCACATGTTTTTGATT+AGG | + | chr6_4:52532223-52532242 | None:intergenic | 30.0% |
| !!! | TAAACGGTTCTTTTTTGTTG+GGG | + | chr6_4:52532351-52532370 | None:intergenic | 30.0% |
| !!! | GTTAAACGGTTCTTTTTTGT+TGG | + | chr6_4:52532353-52532372 | None:intergenic | 30.0% |
| CAAAAAAGAACCGTTTAACA+TGG | - | chr6_4:52532354-52532373 | Msa0990570:intron | 30.0% | |
| CAATGCATCAAGAATTTCTA+AGG | - | chr6_4:52532384-52532403 | Msa0990570:intron | 30.0% | |
| !! | GGTTTTGCATCTGAAATATA+AGG | + | chr6_4:52532515-52532534 | None:intergenic | 30.0% |
| CATGATTTAGTTGTGTACTA+AGG | - | chr6_4:52532863-52532882 | Msa0990570:intron | 30.0% | |
| TCAGTCTAGGAAATATTGAT+TGG | - | chr6_4:52532938-52532957 | Msa0990570:CDS | 30.0% | |
| GCTCATATATTGATAAAGAG+AGG | - | chr6_4:52532989-52533008 | Msa0990570:CDS | 30.0% | |
| !!! | GATTTTTTCCACTTACCTTT+TGG | + | chr6_4:52533229-52533248 | None:intergenic | 30.0% |
| TTATTGTCACATTGTATGAC+AGG | + | chr6_4:52533343-52533362 | None:intergenic | 30.0% | |
| TCCACAACATTCATCAAAAT+TGG | - | chr6_4:52533462-52533481 | Msa0990570:intron | 30.0% | |
| TTCAAAACATTAGACTGATC+AGG | + | chr6_4:52533499-52533518 | None:intergenic | 30.0% | |
| GGACTGATCAGTAAAATTAT+TGG | + | chr6_4:52533668-52533687 | None:intergenic | 30.0% | |
| !! | ATTTTTCAACGATGGCATTA+TGG | + | chr6_4:52531720-52531739 | None:intergenic | 30.0% |
| !! | TCCAATTGATTTTTCAACGA+TGG | + | chr6_4:52531728-52531747 | None:intergenic | 30.0% |
| TCGTTGAAAAATCAATTGGA+TGG | - | chr6_4:52531728-52531747 | Msa0990570:CDS | 30.0% | |
| CGTTGAAAAATCAATTGGAT+GGG | - | chr6_4:52531729-52531748 | Msa0990570:CDS | 30.0% | |
| !!! | TTTTGCATTGACTCTTTTGA+GGG | - | chr6_4:52531907-52531926 | Msa0990570:CDS | 30.0% |
| !! | AATTTGTTGGAGAAAATCCT+AGG | + | chr6_4:52531990-52532009 | None:intergenic | 30.0% |
| !! | TGATTTGTTGGGTAATTTGT+TGG | + | chr6_4:52532003-52532022 | None:intergenic | 30.0% |
| !! | GACAGGAATATTGATTTGTT+GGG | + | chr6_4:52532014-52532033 | None:intergenic | 30.0% |
| !! | TGACAGGAATATTGATTTGT+TGG | + | chr6_4:52532015-52532034 | None:intergenic | 30.0% |
| !! | GTTTGCACATGTTTTTGATT+AGG | + | chr6_4:52532223-52532242 | None:intergenic | 30.0% |
| !!! | TAAACGGTTCTTTTTTGTTG+GGG | + | chr6_4:52532351-52532370 | None:intergenic | 30.0% |
| !!! | GTTAAACGGTTCTTTTTTGT+TGG | + | chr6_4:52532353-52532372 | None:intergenic | 30.0% |
| CAAAAAAGAACCGTTTAACA+TGG | - | chr6_4:52532354-52532373 | Msa0990570:intron | 30.0% | |
| CAATGCATCAAGAATTTCTA+AGG | - | chr6_4:52532384-52532403 | Msa0990570:intron | 30.0% | |
| !! | GGTTTTGCATCTGAAATATA+AGG | + | chr6_4:52532515-52532534 | None:intergenic | 30.0% |
| CATGATTTAGTTGTGTACTA+AGG | - | chr6_4:52532863-52532882 | Msa0990570:intron | 30.0% | |
| TCAGTCTAGGAAATATTGAT+TGG | - | chr6_4:52532938-52532957 | Msa0990570:CDS | 30.0% | |
| GCTCATATATTGATAAAGAG+AGG | - | chr6_4:52532989-52533008 | Msa0990570:CDS | 30.0% | |
| !!! | GATTTTTTCCACTTACCTTT+TGG | + | chr6_4:52533229-52533248 | None:intergenic | 30.0% |
| TTATTGTCACATTGTATGAC+AGG | + | chr6_4:52533343-52533362 | None:intergenic | 30.0% | |
| TCCACAACATTCATCAAAAT+TGG | - | chr6_4:52533462-52533481 | Msa0990570:intron | 30.0% | |
| TTCAAAACATTAGACTGATC+AGG | + | chr6_4:52533499-52533518 | None:intergenic | 30.0% | |
| GGACTGATCAGTAAAATTAT+TGG | + | chr6_4:52533668-52533687 | None:intergenic | 30.0% | |
| GATCAATCACAAGAACCTTT+AGG | + | chr6_4:52531684-52531703 | None:intergenic | 35.0% | |
| GCCATCGTTGAAAAATCAAT+TGG | - | chr6_4:52531724-52531743 | Msa0990570:CDS | 35.0% | |
| TCAATTGGATGGGATTTCAA+AGG | - | chr6_4:52531739-52531758 | Msa0990570:CDS | 35.0% | |
| !! | AAAAGAAGCATTAGAGCATG+TGG | + | chr6_4:52531891-52531910 | None:intergenic | 35.0% |
| !!! | CTTTTGCATTGACTCTTTTG+AGG | - | chr6_4:52531906-52531925 | Msa0990570:CDS | 35.0% |
| AATCTCAGACATGAATTCCT+AGG | - | chr6_4:52531970-52531989 | Msa0990570:CDS | 35.0% | |
| ATATGTGTCATATGCAGTGA+TGG | - | chr6_4:52532115-52532134 | Msa0990570:CDS | 35.0% | |
| TATGTGTCATATGCAGTGAT+GGG | - | chr6_4:52532116-52532135 | Msa0990570:CDS | 35.0% | |
| TTGATTAGGTCATCACTCAA+AGG | + | chr6_4:52532209-52532228 | None:intergenic | 35.0% | |
| !!! | AAACGGTTCTTTTTTGTTGG+GGG | + | chr6_4:52532350-52532369 | None:intergenic | 35.0% |
| TTGCTTGAGACCATGTTAAA+CGG | + | chr6_4:52532367-52532386 | None:intergenic | 35.0% | |
| GGCAAAGAATCTTACTATCA+AGG | + | chr6_4:52532427-52532446 | None:intergenic | 35.0% | |
| ! | TGCATCTGAAATATAAGGGA+GGG | + | chr6_4:52532510-52532529 | None:intergenic | 35.0% |
| ! | TTGCATCTGAAATATAAGGG+AGG | + | chr6_4:52532511-52532530 | None:intergenic | 35.0% |
| ATTCAAGTGATGAATGTTCC+TGG | - | chr6_4:52532545-52532564 | Msa0990570:intron | 35.0% | |
| TGATACACCAAAAGAATTGG+TGG | - | chr6_4:52532967-52532986 | Msa0990570:CDS | 35.0% | |
| ! | ATATGAGCCACCAATTCTTT+TGG | + | chr6_4:52532977-52532996 | None:intergenic | 35.0% |
| ATGAAAAGCCAAAAGGTAAG+TGG | - | chr6_4:52533218-52533237 | Msa0990570:intron | 35.0% | |
| CTTCCTACTGAAACACAATT+AGG | - | chr6_4:52533268-52533287 | Msa0990570:intron | 35.0% | |
| AGACCTAATTGTGTTTCAGT+AGG | + | chr6_4:52533274-52533293 | None:intergenic | 35.0% | |
| GCAAATATCGATGAATGTTG+TGG | + | chr6_4:52533376-52533395 | None:intergenic | 35.0% | |
| CATCAGACTGATCAGTAAAA+AGG | + | chr6_4:52533402-52533421 | None:intergenic | 35.0% | |
| !! | GCCAATTTTGATGAATGTTG+TGG | + | chr6_4:52533466-52533485 | None:intergenic | 35.0% |
| AGACTGATCAGGAAAAATGT+TGG | + | chr6_4:52533488-52533507 | None:intergenic | 35.0% | |
| AGACTGAGCAGTAAAATTGT+TGG | + | chr6_4:52533578-52533597 | None:intergenic | 35.0% | |
| CAATTAAAGAACTCATCACC+TGG | + | chr6_4:52533700-52533719 | None:intergenic | 35.0% | |
| GATCAATCACAAGAACCTTT+AGG | + | chr6_4:52531684-52531703 | None:intergenic | 35.0% | |
| GCCATCGTTGAAAAATCAAT+TGG | - | chr6_4:52531724-52531743 | Msa0990570:CDS | 35.0% | |
| TCAATTGGATGGGATTTCAA+AGG | - | chr6_4:52531739-52531758 | Msa0990570:CDS | 35.0% | |
| !! | AAAAGAAGCATTAGAGCATG+TGG | + | chr6_4:52531891-52531910 | None:intergenic | 35.0% |
| !!! | CTTTTGCATTGACTCTTTTG+AGG | - | chr6_4:52531906-52531925 | Msa0990570:CDS | 35.0% |
| AATCTCAGACATGAATTCCT+AGG | - | chr6_4:52531970-52531989 | Msa0990570:CDS | 35.0% | |
| ATATGTGTCATATGCAGTGA+TGG | - | chr6_4:52532115-52532134 | Msa0990570:CDS | 35.0% | |
| TATGTGTCATATGCAGTGAT+GGG | - | chr6_4:52532116-52532135 | Msa0990570:CDS | 35.0% | |
| TTGATTAGGTCATCACTCAA+AGG | + | chr6_4:52532209-52532228 | None:intergenic | 35.0% | |
| !!! | AAACGGTTCTTTTTTGTTGG+GGG | + | chr6_4:52532350-52532369 | None:intergenic | 35.0% |
| TTGCTTGAGACCATGTTAAA+CGG | + | chr6_4:52532367-52532386 | None:intergenic | 35.0% | |
| GGCAAAGAATCTTACTATCA+AGG | + | chr6_4:52532427-52532446 | None:intergenic | 35.0% | |
| ! | TGCATCTGAAATATAAGGGA+GGG | + | chr6_4:52532510-52532529 | None:intergenic | 35.0% |
| ! | TTGCATCTGAAATATAAGGG+AGG | + | chr6_4:52532511-52532530 | None:intergenic | 35.0% |
| ATTCAAGTGATGAATGTTCC+TGG | - | chr6_4:52532545-52532564 | Msa0990570:intron | 35.0% | |
| TGATACACCAAAAGAATTGG+TGG | - | chr6_4:52532967-52532986 | Msa0990570:CDS | 35.0% | |
| ! | ATATGAGCCACCAATTCTTT+TGG | + | chr6_4:52532977-52532996 | None:intergenic | 35.0% |
| ATGAAAAGCCAAAAGGTAAG+TGG | - | chr6_4:52533218-52533237 | Msa0990570:intron | 35.0% | |
| CTTCCTACTGAAACACAATT+AGG | - | chr6_4:52533268-52533287 | Msa0990570:intron | 35.0% | |
| AGACCTAATTGTGTTTCAGT+AGG | + | chr6_4:52533274-52533293 | None:intergenic | 35.0% | |
| GCAAATATCGATGAATGTTG+TGG | + | chr6_4:52533376-52533395 | None:intergenic | 35.0% | |
| CATCAGACTGATCAGTAAAA+AGG | + | chr6_4:52533402-52533421 | None:intergenic | 35.0% | |
| !! | GCCAATTTTGATGAATGTTG+TGG | + | chr6_4:52533466-52533485 | None:intergenic | 35.0% |
| AGACTGATCAGGAAAAATGT+TGG | + | chr6_4:52533488-52533507 | None:intergenic | 35.0% | |
| AGACTGAGCAGTAAAATTGT+TGG | + | chr6_4:52533578-52533597 | None:intergenic | 35.0% | |
| CAATTAAAGAACTCATCACC+TGG | + | chr6_4:52533700-52533719 | None:intergenic | 35.0% | |
| TCTCAGTTGAAAGAGCCAAA+GGG | + | chr6_4:52531630-52531649 | None:intergenic | 40.0% | |
| ATCTCAGTTGAAAGAGCCAA+AGG | + | chr6_4:52531631-52531650 | None:intergenic | 40.0% | |
| !! | TTTGGCTCTTTCAACTGAGA+TGG | - | chr6_4:52531630-52531649 | Msa0990570:CDS | 40.0% |
| CTTCCCCAACAATTCTTAGA+CGG | - | chr6_4:52531658-52531677 | Msa0990570:CDS | 40.0% | |
| TAGGCCGTCTAAGAATTGTT+GGG | + | chr6_4:52531665-52531684 | None:intergenic | 40.0% | |
| TTAGGCCGTCTAAGAATTGT+TGG | + | chr6_4:52531666-52531685 | None:intergenic | 40.0% | |
| ACAATTCTTAGACGGCCTAA+AGG | - | chr6_4:52531666-52531685 | Msa0990570:CDS | 40.0% | |
| AACGATGGCATTATGGATAG+TGG | + | chr6_4:52531713-52531732 | None:intergenic | 40.0% | |
| !! | ACTCTTTTGAGGGAAGCAAA+GGG | - | chr6_4:52531917-52531936 | Msa0990570:CDS | 40.0% |
| ATCAACAAGTGCAGCTATGA+AGG | - | chr6_4:52532148-52532167 | Msa0990570:intron | 40.0% | |
| GCTATGAAGGCTATTGCAAA+CGG | - | chr6_4:52532161-52532180 | Msa0990570:intron | 40.0% | |
| CTATGAAGGCTATTGCAAAC+GGG | - | chr6_4:52532162-52532181 | Msa0990570:intron | 40.0% | |
| TATGAAGGCTATTGCAAACG+GGG | - | chr6_4:52532163-52532182 | Msa0990570:intron | 40.0% | |
| ACATGTGCAAACATGTTCCA+AGG | - | chr6_4:52532231-52532250 | Msa0990570:intron | 40.0% | |
| ! | CATCTGAAATATAAGGGAGG+GGG | + | chr6_4:52532508-52532527 | None:intergenic | 40.0% |
| ! | GCATCTGAAATATAAGGGAG+GGG | + | chr6_4:52532509-52532528 | None:intergenic | 40.0% |
| ATATGCTCTCTTGTCAAACC+AGG | + | chr6_4:52532566-52532585 | None:intergenic | 40.0% | |
| GCATATTGCTAGCCATTTAC+AGG | - | chr6_4:52532580-52532599 | Msa0990570:intron | 40.0% | |
| GAATGCACATCAATCAGTCT+AGG | - | chr6_4:52532925-52532944 | Msa0990570:CDS | 40.0% | |
| TCGATGAATGTTGTGGTGAA+TGG | + | chr6_4:52533369-52533388 | None:intergenic | 40.0% | |
| TCTCAGTTGAAAGAGCCAAA+GGG | + | chr6_4:52531630-52531649 | None:intergenic | 40.0% | |
| ATCTCAGTTGAAAGAGCCAA+AGG | + | chr6_4:52531631-52531650 | None:intergenic | 40.0% | |
| !! | TTTGGCTCTTTCAACTGAGA+TGG | - | chr6_4:52531630-52531649 | Msa0990570:CDS | 40.0% |
| CTTCCCCAACAATTCTTAGA+CGG | - | chr6_4:52531658-52531677 | Msa0990570:CDS | 40.0% | |
| TAGGCCGTCTAAGAATTGTT+GGG | + | chr6_4:52531665-52531684 | None:intergenic | 40.0% | |
| TTAGGCCGTCTAAGAATTGT+TGG | + | chr6_4:52531666-52531685 | None:intergenic | 40.0% | |
| ACAATTCTTAGACGGCCTAA+AGG | - | chr6_4:52531666-52531685 | Msa0990570:CDS | 40.0% | |
| AACGATGGCATTATGGATAG+TGG | + | chr6_4:52531713-52531732 | None:intergenic | 40.0% | |
| !! | ACTCTTTTGAGGGAAGCAAA+GGG | - | chr6_4:52531917-52531936 | Msa0990570:CDS | 40.0% |
| ATCAACAAGTGCAGCTATGA+AGG | - | chr6_4:52532148-52532167 | Msa0990570:intron | 40.0% | |
| GCTATGAAGGCTATTGCAAA+CGG | - | chr6_4:52532161-52532180 | Msa0990570:intron | 40.0% | |
| CTATGAAGGCTATTGCAAAC+GGG | - | chr6_4:52532162-52532181 | Msa0990570:intron | 40.0% | |
| TATGAAGGCTATTGCAAACG+GGG | - | chr6_4:52532163-52532182 | Msa0990570:intron | 40.0% | |
| ACATGTGCAAACATGTTCCA+AGG | - | chr6_4:52532231-52532250 | Msa0990570:intron | 40.0% | |
| ! | CATCTGAAATATAAGGGAGG+GGG | + | chr6_4:52532508-52532527 | None:intergenic | 40.0% |
| ! | GCATCTGAAATATAAGGGAG+GGG | + | chr6_4:52532509-52532528 | None:intergenic | 40.0% |
| ATATGCTCTCTTGTCAAACC+AGG | + | chr6_4:52532566-52532585 | None:intergenic | 40.0% | |
| GCATATTGCTAGCCATTTAC+AGG | - | chr6_4:52532580-52532599 | Msa0990570:intron | 40.0% | |
| GAATGCACATCAATCAGTCT+AGG | - | chr6_4:52532925-52532944 | Msa0990570:CDS | 40.0% | |
| TCGATGAATGTTGTGGTGAA+TGG | + | chr6_4:52533369-52533388 | None:intergenic | 40.0% | |
| CACTCTTGCTTTCTTCCCTT+TGG | - | chr6_4:52531612-52531631 | Msa0990570:CDS | 45.0% | |
| AGGCCGTCTAAGAATTGTTG+GGG | + | chr6_4:52531664-52531683 | None:intergenic | 45.0% | |
| GCATTAGAGCATGTGGTAAC+TGG | + | chr6_4:52531884-52531903 | None:intergenic | 45.0% | |
| !! | GACTCTTTTGAGGGAAGCAA+AGG | - | chr6_4:52531916-52531935 | Msa0990570:CDS | 45.0% |
| !! | TATGCAGTGATGGGTGTTGA+TGG | - | chr6_4:52532125-52532144 | Msa0990570:CDS | 45.0% |
| CTAAGGGCTGTGAATCAGTT+TGG | - | chr6_4:52532401-52532420 | Msa0990570:intron | 45.0% | |
| GCGAATGTCGATGAATGTTG+TGG | + | chr6_4:52533646-52533665 | None:intergenic | 45.0% | |
| GATCAGTCCAACATGAATCC+AGG | - | chr6_4:52533679-52533698 | Msa0990570:exon | 45.0% | |
| CTCATCACCTGGATTCATGT+TGG | + | chr6_4:52533689-52533708 | None:intergenic | 45.0% | |
| CACTCTTGCTTTCTTCCCTT+TGG | - | chr6_4:52531612-52531631 | Msa0990570:CDS | 45.0% | |
| AGGCCGTCTAAGAATTGTTG+GGG | + | chr6_4:52531664-52531683 | None:intergenic | 45.0% | |
| GCATTAGAGCATGTGGTAAC+TGG | + | chr6_4:52531884-52531903 | None:intergenic | 45.0% | |
| !! | GACTCTTTTGAGGGAAGCAA+AGG | - | chr6_4:52531916-52531935 | Msa0990570:CDS | 45.0% |
| !! | TATGCAGTGATGGGTGTTGA+TGG | - | chr6_4:52532125-52532144 | Msa0990570:CDS | 45.0% |
| CTAAGGGCTGTGAATCAGTT+TGG | - | chr6_4:52532401-52532420 | Msa0990570:intron | 45.0% | |
| GCGAATGTCGATGAATGTTG+TGG | + | chr6_4:52533646-52533665 | None:intergenic | 45.0% | |
| GATCAGTCCAACATGAATCC+AGG | - | chr6_4:52533679-52533698 | Msa0990570:exon | 45.0% | |
| CTCATCACCTGGATTCATGT+TGG | + | chr6_4:52533689-52533708 | None:intergenic | 45.0% | |
| GGCTCTTTCAACTGAGATGG+AGG | - | chr6_4:52531633-52531652 | Msa0990570:CDS | 50.0% | |
| GGCTCTTTCAACTGAGATGG+AGG | - | chr6_4:52531633-52531652 | Msa0990570:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 52531600 | 52533732 | 52531600 | ID=Msa0990570;Name=Msa0990570 |
| chr6_4 | mRNA | 52531600 | 52533732 | 52531600 | ID=Msa0990570-mRNA-1;Parent=Msa0990570;Name=Msa0990570-mRNA-1;_AED=0.12;_eAED=0.15;_QI=49|0|0|1|0.75|0.6|5|0|369 |
| chr6_4 | exon | 52533572 | 52533732 | 52533572 | ID=Msa0990570-mRNA-1:exon:11012;Parent=Msa0990570-mRNA-1 |
| chr6_4 | exon | 52533394 | 52533447 | 52533394 | ID=Msa0990570-mRNA-1:exon:11011;Parent=Msa0990570-mRNA-1 |
| chr6_4 | exon | 52532901 | 52533200 | 52532901 | ID=Msa0990570-mRNA-1:exon:11010;Parent=Msa0990570-mRNA-1 |
| chr6_4 | exon | 52532731 | 52532807 | 52532731 | ID=Msa0990570-mRNA-1:exon:11009;Parent=Msa0990570-mRNA-1 |
| chr6_4 | exon | 52531600 | 52532163 | 52531600 | ID=Msa0990570-mRNA-1:exon:11008;Parent=Msa0990570-mRNA-1 |
| chr6_4 | five_prime_UTR | 52533684 | 52533732 | 52533684 | ID=Msa0990570-mRNA-1:five_prime_utr;Parent=Msa0990570-mRNA-1 |
| chr6_4 | CDS | 52533572 | 52533683 | 52533572 | ID=Msa0990570-mRNA-1:cds;Parent=Msa0990570-mRNA-1 |
| chr6_4 | CDS | 52533394 | 52533447 | 52533394 | ID=Msa0990570-mRNA-1:cds;Parent=Msa0990570-mRNA-1 |
| chr6_4 | CDS | 52532901 | 52533200 | 52532901 | ID=Msa0990570-mRNA-1:cds;Parent=Msa0990570-mRNA-1 |
| chr6_4 | CDS | 52532731 | 52532807 | 52532731 | ID=Msa0990570-mRNA-1:cds;Parent=Msa0990570-mRNA-1 |
| chr6_4 | CDS | 52531600 | 52532163 | 52531600 | ID=Msa0990570-mRNA-1:cds;Parent=Msa0990570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
