Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990690 | KEH26142.1 | 78.030 | 396 | 47 | 4 | 20 | 384 | 1 | 387 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990690 | sp|Q8L9Y3|ARR14_ARATH | 38.224 | 259 | 123 | 5 | 32 | 253 | 6 | 264 | 4.39e-49 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990690 | A0A072U908 | 78.030 | 396 | 47 | 4 | 20 | 384 | 1 | 387 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0990690 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990690 | MtrunA17_Chr6g0471041 | 81.967 | 366 | 48 | 3 | 20 | 376 | 1 | 357 | 0.0 | 604 |
| Msa0990690 | MtrunA17_Chr6g0471041 | 64.000 | 100 | 28 | 1 | 285 | 384 | 326 | 417 | 2.86e-29 | 117 |
| Msa0990690 | MtrunA17_Chr4g0009851 | 44.695 | 311 | 148 | 7 | 20 | 317 | 1 | 300 | 3.17e-69 | 220 |
| Msa0990690 | MtrunA17_Chr4g0009901 | 45.798 | 238 | 124 | 3 | 33 | 268 | 10 | 244 | 2.78e-60 | 196 |
| Msa0990690 | MtrunA17_Chr8g0383961 | 48.031 | 254 | 104 | 5 | 20 | 273 | 1 | 226 | 3.31e-60 | 195 |
| Msa0990690 | MtrunA17_Chr1g0161431 | 41.455 | 275 | 122 | 5 | 16 | 258 | 1 | 268 | 2.60e-58 | 200 |
| Msa0990690 | MtrunA17_Chr4g0009981 | 40.909 | 264 | 129 | 5 | 78 | 321 | 2 | 258 | 1.94e-51 | 172 |
| Msa0990690 | MtrunA17_Chr4g0067981 | 37.945 | 253 | 128 | 3 | 32 | 256 | 30 | 281 | 1.51e-48 | 174 |
| Msa0990690 | MtrunA17_Chr2g0294911 | 36.742 | 264 | 140 | 3 | 16 | 253 | 12 | 274 | 5.79e-48 | 172 |
| Msa0990690 | MtrunA17_Chr8g0376881 | 38.017 | 242 | 123 | 3 | 33 | 247 | 25 | 266 | 5.94e-47 | 168 |
| Msa0990690 | MtrunA17_Chr3g0123131 | 36.992 | 246 | 126 | 4 | 31 | 247 | 11 | 256 | 5.70e-46 | 166 |
| Msa0990690 | MtrunA17_Chr8g0391911 | 40.000 | 235 | 112 | 4 | 33 | 239 | 9 | 242 | 3.10e-42 | 148 |
| Msa0990690 | MtrunA17_Chr3g0137101 | 35.341 | 249 | 128 | 4 | 32 | 247 | 7 | 255 | 5.10e-39 | 147 |
| Msa0990690 | MtrunA17_Chr1g0149841 | 35.772 | 246 | 127 | 4 | 32 | 247 | 4 | 248 | 5.85e-38 | 142 |
| Msa0990690 | MtrunA17_Chr4g0074411 | 30.435 | 276 | 163 | 3 | 31 | 277 | 16 | 291 | 1.71e-37 | 143 |
| Msa0990690 | MtrunA17_Chr4g0074401 | 31.538 | 260 | 146 | 3 | 20 | 247 | 1 | 260 | 1.90e-37 | 142 |
| Msa0990690 | MtrunA17_Chr7g0275401 | 32.794 | 247 | 136 | 4 | 32 | 248 | 4 | 250 | 1.74e-36 | 134 |
| Msa0990690 | MtrunA17_Chr2g0304841 | 30.303 | 264 | 146 | 3 | 23 | 248 | 8 | 271 | 2.84e-34 | 134 |
| Msa0990690 | MtrunA17_Chr3g0134481 | 32.243 | 214 | 112 | 1 | 26 | 239 | 1 | 181 | 2.06e-33 | 123 |
| Msa0990690 | MtrunA17_Chr6g0456631 | 42.073 | 164 | 90 | 4 | 28 | 189 | 4 | 164 | 4.72e-31 | 116 |
| Msa0990690 | MtrunA17_Chr7g0275891 | 30.350 | 257 | 137 | 4 | 32 | 246 | 4 | 260 | 6.76e-31 | 120 |
| Msa0990690 | MtrunA17_Chr1g0149851 | 29.213 | 267 | 145 | 3 | 32 | 254 | 4 | 270 | 3.09e-29 | 119 |
| Msa0990690 | MtrunA17_Chr3g0134461 | 33.028 | 218 | 120 | 3 | 26 | 241 | 1 | 194 | 8.70e-29 | 111 |
| Msa0990690 | MtrunA17_Chr4g0074421 | 32.044 | 181 | 99 | 2 | 83 | 239 | 2 | 182 | 5.95e-28 | 108 |
| Msa0990690 | MtrunA17_Chr4g0011071 | 40.714 | 140 | 75 | 3 | 80 | 214 | 36 | 172 | 5.88e-27 | 105 |
| Msa0990690 | MtrunA17_Chr1g0149831 | 31.892 | 185 | 94 | 3 | 92 | 247 | 1 | 182 | 1.88e-24 | 100 |
| Msa0990690 | MtrunA17_Chr4g0009991 | 42.373 | 118 | 63 | 2 | 125 | 239 | 1 | 116 | 7.29e-23 | 92.8 |
| Msa0990690 | MtrunA17_Chr5g0423031 | 53.086 | 81 | 37 | 1 | 33 | 113 | 10 | 89 | 2.49e-18 | 82.0 |
| Msa0990690 | MtrunA17_Chr4g0010001 | 49.383 | 81 | 40 | 1 | 33 | 113 | 10 | 89 | 3.23e-17 | 76.3 |
| Msa0990690 | MtrunA17_Chr6g0473731 | 31.507 | 146 | 92 | 1 | 113 | 250 | 10 | 155 | 1.93e-16 | 80.5 |
| Msa0990690 | MtrunA17_Chr4g0031961 | 49.296 | 71 | 33 | 1 | 189 | 259 | 130 | 197 | 3.19e-14 | 72.8 |
| Msa0990690 | MtrunA17_Chr7g0255711 | 54.237 | 59 | 27 | 0 | 189 | 247 | 90 | 148 | 6.06e-14 | 72.0 |
| Msa0990690 | MtrunA17_Chr5g0400241 | 34.109 | 129 | 81 | 2 | 31 | 158 | 12 | 137 | 3.03e-13 | 71.2 |
| Msa0990690 | MtrunA17_Chr5g0400241 | 45.455 | 55 | 30 | 0 | 189 | 243 | 310 | 364 | 5.11e-11 | 64.3 |
| Msa0990690 | MtrunA17_Chr5g0417521 | 54.545 | 55 | 24 | 1 | 190 | 243 | 15 | 69 | 4.92e-12 | 66.6 |
| Msa0990690 | MtrunA17_Chr4g0042451 | 50.909 | 55 | 26 | 1 | 190 | 243 | 17 | 71 | 3.60e-11 | 63.9 |
| Msa0990690 | MtrunA17_Chr7g0261911 | 37.931 | 87 | 51 | 2 | 162 | 247 | 236 | 320 | 3.64e-11 | 64.7 |
| Msa0990690 | MtrunA17_Chr2g0321461 | 38.043 | 92 | 49 | 3 | 154 | 244 | 16 | 100 | 3.92e-11 | 64.3 |
| Msa0990690 | MtrunA17_Chr4g0054981 | 45.455 | 55 | 30 | 0 | 189 | 243 | 309 | 363 | 3.97e-11 | 64.7 |
| Msa0990690 | MtrunA17_Chr1g0198601 | 50.000 | 60 | 29 | 1 | 189 | 247 | 210 | 269 | 5.91e-11 | 63.5 |
| Msa0990690 | MtrunA17_Chr6g0461641 | 48.214 | 56 | 28 | 1 | 190 | 244 | 42 | 97 | 6.67e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990690 | AT2G01760.1 | 38.224 | 259 | 123 | 5 | 32 | 253 | 6 | 264 | 4.47e-50 | 173 |
| Msa0990690 | AT2G01760.2 | 34.495 | 287 | 123 | 6 | 32 | 253 | 6 | 292 | 3.35e-44 | 158 |
| Msa0990690 | AT1G67710.1 | 39.044 | 251 | 121 | 7 | 36 | 255 | 10 | 259 | 5.50e-44 | 160 |
| Msa0990690 | AT3G16857.1 | 34.545 | 275 | 131 | 6 | 27 | 253 | 27 | 300 | 4.58e-43 | 159 |
| Msa0990690 | AT3G16857.2 | 34.545 | 275 | 131 | 6 | 27 | 253 | 27 | 300 | 6.07e-43 | 159 |
| Msa0990690 | AT2G25180.1 | 32.558 | 258 | 148 | 3 | 20 | 252 | 1 | 257 | 2.76e-37 | 142 |
| Msa0990690 | AT4G31920.1 | 34.524 | 252 | 150 | 5 | 20 | 257 | 1 | 251 | 9.20e-37 | 140 |
| Msa0990690 | AT3G16857.3 | 33.478 | 230 | 106 | 4 | 71 | 253 | 1 | 230 | 3.68e-35 | 137 |
| Msa0990690 | AT5G58080.1 | 31.660 | 259 | 150 | 5 | 20 | 253 | 1 | 257 | 2.49e-33 | 131 |
| Msa0990690 | AT2G01760.3 | 37.245 | 196 | 86 | 5 | 95 | 253 | 4 | 199 | 3.82e-33 | 126 |
| Msa0990690 | AT1G67710.2 | 37.629 | 194 | 91 | 4 | 92 | 255 | 1 | 194 | 1.91e-30 | 121 |
| Msa0990690 | AT5G49240.1 | 29.960 | 247 | 143 | 5 | 22 | 239 | 27 | 272 | 1.15e-28 | 114 |
| Msa0990690 | AT3G62670.1 | 29.502 | 261 | 151 | 8 | 16 | 248 | 19 | 274 | 4.73e-28 | 114 |
| Msa0990690 | AT1G49190.1 | 27.652 | 264 | 156 | 8 | 23 | 253 | 20 | 281 | 3.16e-25 | 106 |
| Msa0990690 | AT1G67710.3 | 38.506 | 174 | 77 | 4 | 112 | 255 | 12 | 185 | 1.71e-24 | 104 |
| Msa0990690 | AT5G07210.2 | 26.007 | 273 | 137 | 6 | 37 | 250 | 16 | 282 | 2.05e-18 | 87.4 |
| Msa0990690 | AT5G07210.1 | 25.532 | 282 | 135 | 8 | 37 | 250 | 16 | 290 | 1.62e-16 | 81.6 |
| Msa0990690 | AT5G59570.2 | 34.091 | 132 | 84 | 2 | 121 | 252 | 75 | 203 | 2.71e-15 | 76.3 |
| Msa0990690 | AT5G59570.1 | 34.091 | 132 | 84 | 2 | 121 | 252 | 75 | 203 | 2.71e-15 | 76.3 |
| Msa0990690 | AT3G46640.2 | 50.704 | 71 | 32 | 1 | 189 | 259 | 143 | 210 | 1.29e-14 | 74.7 |
| Msa0990690 | AT3G46640.1 | 50.704 | 71 | 32 | 1 | 189 | 259 | 143 | 210 | 1.29e-14 | 74.7 |
| Msa0990690 | AT3G46640.3 | 50.704 | 71 | 32 | 1 | 189 | 259 | 143 | 210 | 1.60e-14 | 74.3 |
| Msa0990690 | AT1G49190.2 | 28.148 | 135 | 97 | 0 | 23 | 157 | 20 | 154 | 5.88e-14 | 73.9 |
| Msa0990690 | AT5G05090.1 | 54.237 | 59 | 27 | 0 | 189 | 247 | 80 | 138 | 6.05e-14 | 72.0 |
| Msa0990690 | AT2G40970.1 | 52.542 | 59 | 28 | 0 | 189 | 247 | 104 | 162 | 6.27e-14 | 71.6 |
| Msa0990690 | AT3G10760.1 | 54.237 | 59 | 27 | 0 | 189 | 247 | 104 | 162 | 6.99e-14 | 72.4 |
| Msa0990690 | AT2G27070.1 | 50.794 | 63 | 30 | 1 | 185 | 247 | 221 | 282 | 5.60e-13 | 70.9 |
| Msa0990690 | AT3G04030.1 | 53.571 | 56 | 25 | 1 | 190 | 244 | 45 | 100 | 8.11e-12 | 66.6 |
| Msa0990690 | AT3G04030.3 | 53.571 | 56 | 25 | 1 | 190 | 244 | 45 | 100 | 9.08e-12 | 66.6 |
| Msa0990690 | AT3G04030.2 | 50.909 | 55 | 27 | 0 | 190 | 244 | 45 | 99 | 1.07e-11 | 66.2 |
| Msa0990690 | AT5G18240.2 | 53.571 | 56 | 25 | 1 | 190 | 244 | 45 | 100 | 1.17e-11 | 66.2 |
| Msa0990690 | AT5G18240.3 | 53.571 | 56 | 25 | 1 | 190 | 244 | 45 | 100 | 1.17e-11 | 66.2 |
| Msa0990690 | AT5G18240.5 | 53.571 | 56 | 25 | 1 | 190 | 244 | 45 | 100 | 1.33e-11 | 66.2 |
| Msa0990690 | AT5G18240.1 | 53.571 | 56 | 25 | 1 | 190 | 244 | 45 | 100 | 1.38e-11 | 65.9 |
| Msa0990690 | AT5G18240.4 | 53.571 | 56 | 25 | 1 | 190 | 244 | 45 | 100 | 1.38e-11 | 65.9 |
| Msa0990690 | AT5G44190.2 | 40.000 | 75 | 40 | 1 | 189 | 263 | 146 | 215 | 5.98e-11 | 63.9 |
| Msa0990690 | AT5G44190.1 | 46.296 | 54 | 29 | 0 | 189 | 242 | 146 | 199 | 7.14e-11 | 63.9 |
Find 54 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTTTAATCGACTGTTTA+AGG | 0.114951 | 6_4:+53016835 | Msa0990690:CDS |
| AACAATTCTTAGAGGGTTTA+AGG | 0.118099 | 6_4:+53013140 | Msa0990690:CDS |
| CTAAGGGCTGTGAATCAATT+TGG | 0.229550 | 6_4:+53014051 | Msa0990690:CDS |
| CAATGCATCAAGAATTTCTA+AGG | 0.275756 | 6_4:+53014034 | Msa0990690:CDS |
| TCCACAACATTCATCAAAAT+TGG | 0.275763 | 6_4:+53016589 | Msa0990690:CDS |
| GCATATTGCTAGCCATTTAC+AGG | 0.279083 | 6_4:+53014231 | Msa0990690:CDS |
| TGCTTTAATCCCTTCTTCAA+TGG | 0.341450 | 6_4:+53013087 | Msa0990690:CDS |
| CCCGTTTGCAATAGCCTTCA+AGG | 0.349006 | 6_4:-53013812 | None:intergenic |
| ACTTCCCCAACAATTCTTAG+AGG | 0.375785 | 6_4:+53013132 | Msa0990690:CDS |
| TGACAGGAATATTGATTTGT+TGG | 0.378211 | 6_4:-53013488 | None:intergenic |
| GATCAAATTCATGTTGATAA+TGG | 0.381612 | 6_4:+53013928 | Msa0990690:CDS |
| TAAACCCTCTAAGAATTGTT+GGG | 0.382270 | 6_4:-53013137 | None:intergenic |
| ACAATTCTTAGAGGGTTTAA+GGG | 0.385698 | 6_4:+53013141 | Msa0990690:CDS |
| TGATTTGTTGGGTAATTTGT+TGG | 0.402510 | 6_4:-53013476 | None:intergenic |
| ATTCAAGTGATGAATGTTCC+TGG | 0.409770 | 6_4:+53014196 | Msa0990690:CDS |
| CCTTGAAGGCTATTGCAAAC+GGG | 0.420675 | 6_4:+53013812 | Msa0990690:CDS |
| TTAAACCCTCTAAGAATTGT+TGG | 0.427205 | 6_4:-53013138 | None:intergenic |
| GCCATCGTTGAAAAGTCAAT+TGG | 0.430946 | 6_4:+53013199 | Msa0990690:CDS |
| TCCTTGAAGGCTATTGCAAA+CGG | 0.433944 | 6_4:+53013811 | Msa0990690:CDS |
| GACAGGAATATTGATTTGTT+GGG | 0.435755 | 6_4:-53013487 | None:intergenic |
| TGTGCAGTGATGGGTGTTGA+TGG | 0.436154 | 6_4:+53013775 | Msa0990690:intron |
| AATTTGTTGGAGAAAATCAT+AGG | 0.440238 | 6_4:-53013463 | None:intergenic |
| AACGATGGCATTGTGGATAG+TGG | 0.451069 | 6_4:-53013185 | None:intergenic |
| AATTGAAACTTACTTTAAAG+AGG | 0.455987 | 6_4:+53016411 | Msa0990690:CDS |
| TTATTGTCACATTGTATGAC+TGG | 0.461320 | 6_4:-53016557 | None:intergenic |
| TTCAAAACATTAGACTGATC+AGG | 0.466345 | 6_4:-53016623 | None:intergenic |
| ATCAACAAGTGCATCCTTGA+AGG | 0.472077 | 6_4:+53013798 | Msa0990690:CDS |
| GTTGAAAGAGCCATTGAAGA+AGG | 0.472839 | 6_4:-53013097 | None:intergenic |
| GGCAAAGAATCTTACTATCA+AGG | 0.473824 | 6_4:-53014074 | None:intergenic |
| AGACTGATCAGTAAAATTGT+TGG | 0.484727 | 6_4:-53016702 | None:intergenic |
| AATGGCTCTTTCAACTGAGA+TGG | 0.494149 | 6_4:+53013105 | Msa0990690:CDS |
| TCATGTTGATGTGGTTGAAA+AGG | 0.515561 | 6_4:+53013963 | Msa0990690:CDS |
| CGTTGAAAAGTCAATTGGAT+GGG | 0.523926 | 6_4:+53013204 | Msa0990690:CDS |
| TATATGTTCTTACTAATGAC+AGG | 0.536013 | 6_4:-53013504 | None:intergenic |
| TTAAAGAATGAAATACCAAA+AGG | 0.536683 | 6_4:+53016452 | Msa0990690:CDS |
| CGATTAAAGAACTCATCACC+TGG | 0.547648 | 6_4:-53016824 | None:intergenic |
| CTCATCACCTGGATTCATGT+TGG | 0.553676 | 6_4:-53016813 | None:intergenic |
| CTTCCCCAACAATTCTTAGA+GGG | 0.553790 | 6_4:+53013133 | Msa0990690:CDS |
| ACATGTGCAAACACGTTCCA+AGG | 0.562980 | 6_4:+53013881 | Msa0990690:CDS |
| TTGAAAGAGCCATTGAAGAA+GGG | 0.568093 | 6_4:-53013096 | None:intergenic |
| TTGATTAGGTCATCACTCAA+AGG | 0.569533 | 6_4:-53013856 | None:intergenic |
| GATCAGTCCAACATGAATCC+AGG | 0.574425 | 6_4:+53016806 | Msa0990690:CDS |
| TCGTTGAAAAGTCAATTGGA+TGG | 0.580260 | 6_4:+53013203 | Msa0990690:CDS |
| ATGAAATACCAAAAGGTGAG+TGG | 0.583760 | 6_4:+53016459 | Msa0990690:CDS |
| TTCACTCTTCACCTCAACAA+CGG | 0.596457 | 6_4:+53013062 | Msa0990690:CDS |
| TCAATTGGATGGGATTACAA+AGG | 0.596849 | 6_4:+53013214 | Msa0990690:CDS |
| AAACCCTCTAAGAATTGTTG+GGG | 0.603847 | 6_4:-53013136 | None:intergenic |
| CTTGAAGGCTATTGCAAACG+GGG | 0.604122 | 6_4:+53013813 | Msa0990690:CDS |
| AAAAGAAGCATTAGAGCATG+TGG | 0.613637 | 6_4:-53013364 | None:intergenic |
| AATGCATCAAGAATTTCTAA+GGG | 0.619626 | 6_4:+53014035 | Msa0990690:CDS |
| ATTAAAGCAAACCGTTGTTG+AGG | 0.620227 | 6_4:-53013073 | None:intergenic |
| AAAAGAATCTCATGTTGATG+TGG | 0.621750 | 6_4:+53013954 | Msa0990690:CDS |
| GTGAATGTCGGTGAATGTTG+TGG | 0.625497 | 6_4:-53016770 | None:intergenic |
| ATATGCTCTCTTGTCAAACC+AGG | 0.644357 | 6_4:-53014214 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTATTTTTTTTAT+TGG | + | chr6_4:53015477-53015496 | Msa0990690:intron | 0.0% |
| !!! | TATTTTTTATTTTTTTTATT+GGG | + | chr6_4:53015478-53015497 | Msa0990690:intron | 0.0% |
| !!! | TTCAAAAAAAATATTTTACA+GGG | - | chr6_4:53014898-53014917 | None:intergenic | 10.0% |
| !!! | ATTCAAAAAAAATATTTTAC+AGG | - | chr6_4:53014899-53014918 | None:intergenic | 10.0% |
| !! | AAAGAAATATTAAAAAATTC+TGG | + | chr6_4:53015638-53015657 | Msa0990690:intron | 10.0% |
| !! | TCATTTAACTATAAATTTAA+GGG | - | chr6_4:53015846-53015865 | None:intergenic | 10.0% |
| !! | AAAAGAAAGAAAAAAAAAAG+TGG | - | chr6_4:53014098-53014117 | None:intergenic | 15.0% |
| !!! | ATCACTTGAATAATTTTTTT+TGG | - | chr6_4:53014187-53014206 | None:intergenic | 15.0% |
| !!! | GTTTGTTTTTTAGATTAATT+TGG | + | chr6_4:53014253-53014272 | Msa0990690:intron | 15.0% |
| !!! | ATTGAAAATTTGATAGATTT+TGG | + | chr6_4:53014342-53014361 | Msa0990690:intron | 15.0% |
| !!! | TTGAAAATTTGATAGATTTT+GGG | + | chr6_4:53014343-53014362 | Msa0990690:intron | 15.0% |
| !! | ATAATAAAAAAAATAACACG+TGG | + | chr6_4:53014374-53014393 | Msa0990690:intron | 15.0% |
| !! | TTAATTGTGTACTAAAAAAA+AGG | + | chr6_4:53014681-53014700 | Msa0990690:intron | 15.0% |
| !!! | GTTTATGATGTTTTTTTAAA+GGG | + | chr6_4:53014826-53014845 | Msa0990690:intron | 15.0% |
| !!! | TCAAAAAAAATATTTTACAG+GGG | - | chr6_4:53014897-53014916 | None:intergenic | 15.0% |
| !!! | TCCAAAAAAAAATATTTTAC+AGG | + | chr6_4:53015146-53015165 | Msa0990690:intron | 15.0% |
| !!! | CCAAAAAAAAATATTTTACA+GGG | + | chr6_4:53015147-53015166 | Msa0990690:intron | 15.0% |
| !!! | CAAAAAAAAATATTTTACAG+GGG | + | chr6_4:53015148-53015167 | Msa0990690:intron | 15.0% |
| !!! | AAAAAAAAATATTTTACAGG+GGG | + | chr6_4:53015149-53015168 | Msa0990690:intron | 15.0% |
| !! | AAATTGCATTATTTAGAAAA+GGG | - | chr6_4:53015221-53015240 | None:intergenic | 15.0% |
| !! | TAAATTGCATTATTTAGAAA+AGG | - | chr6_4:53015222-53015241 | None:intergenic | 15.0% |
| !! | TCTAAAAAAAAAATTTCCTA+GGG | - | chr6_4:53015330-53015349 | None:intergenic | 15.0% |
| !! | ATCTAAAAAAAAAATTTCCT+AGG | - | chr6_4:53015331-53015350 | None:intergenic | 15.0% |
| !! | CTCATTTAACTATAAATTTA+AGG | - | chr6_4:53015847-53015866 | None:intergenic | 15.0% |
| !! | TGAAATAAATAGTTATCTAT+CGG | - | chr6_4:53016099-53016118 | None:intergenic | 15.0% |
| !!! | AATGGTGTAATATATTTTTT+TGG | + | chr6_4:53016207-53016226 | Msa0990690:intron | 15.0% |
| !!! | ATGGTGTAATATATTTTTTT+GGG | + | chr6_4:53016208-53016227 | Msa0990690:intron | 15.0% |
| !!! | GTTTTGTAGTTTTTTTCTTA+GGG | + | chr6_4:53014486-53014505 | Msa0990690:intron | 20.0% |
| !!! | TTTTGTAGTTTTTTTCTTAG+GGG | + | chr6_4:53014487-53014506 | Msa0990690:intron | 20.0% |
| !!! | GGTTTATGATGTTTTTTTAA+AGG | + | chr6_4:53014825-53014844 | Msa0990690:intron | 20.0% |
| !!! | CAAAAAAAATATTTTACAGG+GGG | - | chr6_4:53014896-53014915 | None:intergenic | 20.0% |
| !!! | CTTGTAATTTGAAGATTTTT+TGG | + | chr6_4:53014924-53014943 | Msa0990690:intron | 20.0% |
| !!! | ATTTGAAGATTTTTTGGTTT+TGG | + | chr6_4:53014930-53014949 | Msa0990690:intron | 20.0% |
| !!! | AAATTTGCTCAAATTAAAAG+GGG | - | chr6_4:53015038-53015057 | None:intergenic | 20.0% |
| !!! | GAAATTTGCTCAAATTAAAA+GGG | - | chr6_4:53015039-53015058 | None:intergenic | 20.0% |
| !!! | CTTTTAATTTGAGCAAATTT+CGG | + | chr6_4:53015038-53015057 | Msa0990690:intron | 20.0% |
| !!! | AATTTGAAGATTTTTGGTTT+TGG | - | chr6_4:53015114-53015133 | None:intergenic | 20.0% |
| !!! | TCTTGTAATTTGAAGATTTT+TGG | - | chr6_4:53014923-53014942 | None:intergenic | 20.0% |
| !!! | CCCTGTAAAATATTTTTTTT+TGG | - | chr6_4:53014895-53014914 | None:intergenic | 20.0% |
| !! | ATCATAATAGAGAACAATAA+AGG | - | chr6_4:53015254-53015273 | None:intergenic | 20.0% |
| !! | TATTGTTCTCTATTATGATT+TGG | + | chr6_4:53015255-53015274 | Msa0990690:intron | 20.0% |
| !! | ATTGTTCTCTATTATGATTT+GGG | + | chr6_4:53015256-53015275 | Msa0990690:intron | 20.0% |
| !! | TAAAAAAAAAATTTCCTAGG+GGG | - | chr6_4:53015328-53015347 | None:intergenic | 20.0% |
| !! | CTAAAAAAAAAATTTCCTAG+GGG | - | chr6_4:53015329-53015348 | None:intergenic | 20.0% |
| !! | GATCGTTAATTTATAGATTT+AGG | + | chr6_4:53016126-53016145 | Msa0990690:intron | 20.0% |
| !! | ATATTACACCATTGAAAATA+GGG | - | chr6_4:53016200-53016219 | None:intergenic | 20.0% |
| !! | TATATTACACCATTGAAAAT+AGG | - | chr6_4:53016201-53016220 | None:intergenic | 20.0% |
| !!! | TGGTGTAATATATTTTTTTG+GGG | + | chr6_4:53016209-53016228 | Msa0990690:intron | 20.0% |
| !!! | AATTGAAACTTACTTTAAAG+AGG | + | chr6_4:53016411-53016430 | Msa0990690:CDS | 20.0% |
| !! | TTAAAGAATGAAATACCAAA+AGG | + | chr6_4:53016452-53016471 | Msa0990690:CDS | 20.0% |
| !!! | AATTTGTTGGAGAAAATCAT+AGG | - | chr6_4:53013466-53013485 | None:intergenic | 25.0% |
| ! | TATATGTTCTTACTAATGAC+AGG | - | chr6_4:53013507-53013526 | None:intergenic | 25.0% |
| !!! | AATGTCTGTTTTTGCTTTAT+TGG | + | chr6_4:53013621-53013640 | Msa0990690:intron | 25.0% |
| !! | GATCAAATTCATGTTGATAA+TGG | + | chr6_4:53013928-53013947 | Msa0990690:CDS | 25.0% |
| !!! | TTAAACGGTTCTTTTTTGTT+GGG | - | chr6_4:53014002-53014021 | None:intergenic | 25.0% |
| !!! | TTTAAACGGTTCTTTTTTGT+TGG | - | chr6_4:53014003-53014022 | None:intergenic | 25.0% |
| ! | CAAAAAAGAACCGTTTAAAA+TGG | + | chr6_4:53014004-53014023 | Msa0990690:CDS | 25.0% |
| ! | AATGCATCAAGAATTTCTAA+GGG | + | chr6_4:53014035-53014054 | Msa0990690:CDS | 25.0% |
| !!! | GTTTTGCATCTGAAATATAA+GGG | - | chr6_4:53014165-53014184 | None:intergenic | 25.0% |
| ! | CTAAAAAACAAACCTGTAAA+TGG | - | chr6_4:53014246-53014265 | None:intergenic | 25.0% |
| !!! | GGTTTTGTAGTTTTTTTCTT+AGG | + | chr6_4:53014485-53014504 | Msa0990690:intron | 25.0% |
| !!! | TTTGTAGTTTTTTTCTTAGG+GGG | + | chr6_4:53014488-53014507 | Msa0990690:intron | 25.0% |
| !! | ATAGGCATATGCTTAATTTT+TGG | - | chr6_4:53014562-53014581 | None:intergenic | 25.0% |
| ! | TGAATGTATGTTATTAGCAA+AGG | + | chr6_4:53014609-53014628 | Msa0990690:intron | 25.0% |
| ! | AATTGATACACCAAAAGAAT+TGG | + | chr6_4:53014779-53014798 | Msa0990690:intron | 25.0% |
| ! | TGGAAATGACTTATATTACA+GGG | - | chr6_4:53014868-53014887 | None:intergenic | 25.0% |
| !! | TAAATTTGCTCAAATTACAG+GGG | - | chr6_4:53014976-53014995 | None:intergenic | 25.0% |
| !! | CTAAATTTGCTCAAATTACA+GGG | - | chr6_4:53014977-53014996 | None:intergenic | 25.0% |
| !! | AAATTTGCTCAAATTACAAG+GGG | - | chr6_4:53015006-53015025 | None:intergenic | 25.0% |
| !! | GAAATTTGCTCAAATTACAA+GGG | - | chr6_4:53015007-53015026 | None:intergenic | 25.0% |
| !! | TGAAATTTGCTCAAATTACA+AGG | - | chr6_4:53015008-53015027 | None:intergenic | 25.0% |
| !! | AATTTGCTCAAATTAAAAGG+GGG | - | chr6_4:53015037-53015056 | None:intergenic | 25.0% |
| !! | CGAAATTTGCTCAAATTAAA+AGG | - | chr6_4:53015040-53015059 | None:intergenic | 25.0% |
| !! | CTATTATGATTTGGGTTAAT+AGG | + | chr6_4:53015264-53015283 | Msa0990690:intron | 25.0% |
| !!! | TTTTATTTTGTTGACGCTTT+TGG | - | chr6_4:53015935-53015954 | None:intergenic | 25.0% |
| !!! | TTAACATTTTGATCAAGTTC+TGG | - | chr6_4:53016533-53016552 | None:intergenic | 25.0% |
| ! | GTAAAAATATTGGTGAATGT+CGG | - | chr6_4:53016785-53016804 | None:intergenic | 25.0% |
| ! | TAAACCCTCTAAGAATTGTT+GGG | - | chr6_4:53013140-53013159 | None:intergenic | 30.0% |
| ! | TTAAACCCTCTAAGAATTGT+TGG | - | chr6_4:53013141-53013160 | None:intergenic | 30.0% |
| AACAATTCTTAGAGGGTTTA+AGG | + | chr6_4:53013140-53013159 | Msa0990690:CDS | 30.0% | |
| ACAATTCTTAGAGGGTTTAA+GGG | + | chr6_4:53013141-53013160 | Msa0990690:CDS | 30.0% | |
| !!! | TTTTGCATTGACTCTTTTGA+GGG | + | chr6_4:53013383-53013402 | Msa0990690:CDS | 30.0% |
| !! | TGATTTGTTGGGTAATTTGT+TGG | - | chr6_4:53013479-53013498 | None:intergenic | 30.0% |
| !! | GACAGGAATATTGATTTGTT+GGG | - | chr6_4:53013490-53013509 | None:intergenic | 30.0% |
| !! | TGACAGGAATATTGATTTGT+TGG | - | chr6_4:53013491-53013510 | None:intergenic | 30.0% |
| !! | GTTTGCACATGTTTTTGATT+AGG | - | chr6_4:53013873-53013892 | None:intergenic | 30.0% |
| ! | GTTTCATTCAAAGTTTTCCT+TGG | - | chr6_4:53013901-53013920 | None:intergenic | 30.0% |
| AAAAGAATCTCATGTTGATG+TGG | + | chr6_4:53013954-53013973 | Msa0990690:CDS | 30.0% | |
| !!! | TAAACGGTTCTTTTTTGTTG+GGG | - | chr6_4:53014001-53014020 | None:intergenic | 30.0% |
| ! | TTGCTTGAGACCATTTTAAA+CGG | - | chr6_4:53014017-53014036 | None:intergenic | 30.0% |
| CAATGCATCAAGAATTTCTA+AGG | + | chr6_4:53014034-53014053 | Msa0990690:CDS | 30.0% | |
| !! | GGTTTTGCATCTGAAATATA+AGG | - | chr6_4:53014166-53014185 | None:intergenic | 30.0% |
| TCAGTCTAGGAAATATTGAT+TGG | + | chr6_4:53014753-53014772 | Msa0990690:intron | 30.0% | |
| GCTCATATATTGATAAAGAG+AGG | + | chr6_4:53014804-53014823 | Msa0990690:intron | 30.0% | |
| GAAATGACTTATATTACAGG+GGG | - | chr6_4:53014866-53014885 | None:intergenic | 30.0% | |
| GGAAATGACTTATATTACAG+GGG | - | chr6_4:53014867-53014886 | None:intergenic | 30.0% | |
| CTGGAAATGACTTATATTAC+AGG | - | chr6_4:53014869-53014888 | None:intergenic | 30.0% | |
| ! | AAATTTGCTCAAATTACAGG+GGG | - | chr6_4:53014975-53014994 | None:intergenic | 30.0% |
| ! | CCTAAATTTGCTCAAATTAC+AGG | - | chr6_4:53014978-53014997 | None:intergenic | 30.0% |
| CCTGTAATTTGAGCAAATTT+AGG | + | chr6_4:53014975-53014994 | Msa0990690:intron | 30.0% | |
| ! | AATTTGCTCAAATTACAAGG+GGG | - | chr6_4:53015005-53015024 | None:intergenic | 30.0% |
| ATTTGCTCAAATTAAAAGGG+GGG | - | chr6_4:53015036-53015055 | None:intergenic | 30.0% | |
| ACTGTACAAAATCGAAGATA+TGG | - | chr6_4:53015075-53015094 | None:intergenic | 30.0% | |
| TGTACAGTCAAAATTCATGA+AGG | + | chr6_4:53015087-53015106 | Msa0990690:intron | 30.0% | |
| CAGAAATGACCTATATTACA+GGG | + | chr6_4:53015178-53015197 | Msa0990690:intron | 30.0% | |
| AGAAATGACCTATATTACAG+GGG | + | chr6_4:53015179-53015198 | Msa0990690:intron | 30.0% | |
| AATAGAGAACAATAAAGGTC+AGG | - | chr6_4:53015249-53015268 | None:intergenic | 30.0% | |
| AAAAGTCACCTATATTACAG+GGG | - | chr6_4:53015298-53015317 | None:intergenic | 30.0% | |
| CAAAAGTCACCTATATTACA+GGG | - | chr6_4:53015299-53015318 | None:intergenic | 30.0% | |
| ! | CAAAGAATCTTCATTTTACG+AGG | - | chr6_4:53015359-53015378 | None:intergenic | 30.0% |
| CTCGTAAAATGAAGATTCTT+TGG | + | chr6_4:53015357-53015376 | Msa0990690:intron | 30.0% | |
| !!! | ACGACTTTATGTTATTTTCG+AGG | + | chr6_4:53015772-53015791 | Msa0990690:intron | 30.0% |
| ACTCAGATATATTGAGTGTA+CGG | - | chr6_4:53015807-53015826 | None:intergenic | 30.0% | |
| TTATTGTCACATTGTATGAC+TGG | - | chr6_4:53016560-53016579 | None:intergenic | 30.0% | |
| !! | AATTTTGATGAATGTTGTGG+AGG | - | chr6_4:53016590-53016609 | None:intergenic | 30.0% |
| TCCACAACATTCATCAAAAT+TGG | + | chr6_4:53016589-53016608 | Msa0990690:CDS | 30.0% | |
| TTCAAAACATTAGACTGATC+AGG | - | chr6_4:53016626-53016645 | None:intergenic | 30.0% | |
| AGACTGATCAGTAAAATTGT+TGG | - | chr6_4:53016705-53016724 | None:intergenic | 30.0% | |
| GGACTGATCAGTAAAAATAT+TGG | - | chr6_4:53016795-53016814 | None:intergenic | 30.0% | |
| GTTCTTTAATCGACTGTTTA+AGG | + | chr6_4:53016835-53016854 | Msa0990690:CDS | 30.0% | |
| ATTAAAGCAAACCGTTGTTG+AGG | - | chr6_4:53013076-53013095 | None:intergenic | 35.0% | |
| TGCTTTAATCCCTTCTTCAA+TGG | + | chr6_4:53013087-53013106 | Msa0990690:CDS | 35.0% | |
| TTGAAAGAGCCATTGAAGAA+GGG | - | chr6_4:53013099-53013118 | None:intergenic | 35.0% | |
| ! | AAACCCTCTAAGAATTGTTG+GGG | - | chr6_4:53013139-53013158 | None:intergenic | 35.0% |
| !! | TCCAATTGACTTTTCAACGA+TGG | - | chr6_4:53013203-53013222 | None:intergenic | 35.0% |
| TCGTTGAAAAGTCAATTGGA+TGG | + | chr6_4:53013203-53013222 | Msa0990690:CDS | 35.0% | |
| CGTTGAAAAGTCAATTGGAT+GGG | + | chr6_4:53013204-53013223 | Msa0990690:CDS | 35.0% | |
| TCAATTGGATGGGATTACAA+AGG | + | chr6_4:53013214-53013233 | Msa0990690:CDS | 35.0% | |
| !! | AAAAGAAGCATTAGAGCATG+TGG | - | chr6_4:53013367-53013386 | None:intergenic | 35.0% |
| !!! | CTTTTGCATTGACTCTTTTG+AGG | + | chr6_4:53013382-53013401 | Msa0990690:CDS | 35.0% |
| !!! | TCTGTTTTTGCTTTATTGGC+TGG | + | chr6_4:53013625-53013644 | Msa0990690:intron | 35.0% |
| TTGATTAGGTCATCACTCAA+AGG | - | chr6_4:53013859-53013878 | None:intergenic | 35.0% | |
| TCATGTTGATGTGGTTGAAA+AGG | + | chr6_4:53013963-53013982 | Msa0990690:CDS | 35.0% | |
| !!! | AAACGGTTCTTTTTTGTTGG+GGG | - | chr6_4:53014000-53014019 | None:intergenic | 35.0% |
| GGCAAAGAATCTTACTATCA+AGG | - | chr6_4:53014077-53014096 | None:intergenic | 35.0% | |
| ! | TGCATCTGAAATATAAGGGA+GGG | - | chr6_4:53014161-53014180 | None:intergenic | 35.0% |
| ! | TTGCATCTGAAATATAAGGG+AGG | - | chr6_4:53014162-53014181 | None:intergenic | 35.0% |
| ATTCAAGTGATGAATGTTCC+TGG | + | chr6_4:53014196-53014215 | Msa0990690:CDS | 35.0% | |
| GCAAACATTAGTGCGTATAT+AGG | - | chr6_4:53014580-53014599 | None:intergenic | 35.0% | |
| TGATACACCAAAAGAATTGG+TGG | + | chr6_4:53014782-53014801 | Msa0990690:intron | 35.0% | |
| ! | ATATGAGCCACCAATTCTTT+TGG | - | chr6_4:53014792-53014811 | None:intergenic | 35.0% |
| ! | ATATTTTACAGGGGGAAAAC+TGG | - | chr6_4:53014888-53014907 | None:intergenic | 35.0% |
| ! | GGGGGTGAAATTTTAAATGA+AGG | - | chr6_4:53014957-53014976 | None:intergenic | 35.0% |
| ACAAAATCGAAGATATGGCA+GGG | - | chr6_4:53015070-53015089 | None:intergenic | 35.0% | |
| TACAAAATCGAAGATATGGC+AGG | - | chr6_4:53015071-53015090 | None:intergenic | 35.0% | |
| CCTGTAATATAGGTCATTTC+TGG | - | chr6_4:53015180-53015199 | None:intergenic | 35.0% | |
| CCAGAAATGACCTATATTAC+AGG | + | chr6_4:53015177-53015196 | Msa0990690:intron | 35.0% | |
| GAAATGACCTATATTACAGG+GGG | + | chr6_4:53015180-53015199 | Msa0990690:intron | 35.0% | |
| AAATGACCTATATTACAGGG+GGG | + | chr6_4:53015181-53015200 | Msa0990690:intron | 35.0% | |
| AAAGTCACCTATATTACAGG+GGG | - | chr6_4:53015297-53015316 | None:intergenic | 35.0% | |
| CCAAAAGTCACCTATATTAC+AGG | - | chr6_4:53015300-53015319 | None:intergenic | 35.0% | |
| ! | CCTGTAATATAGGTGACTTT+TGG | + | chr6_4:53015297-53015316 | Msa0990690:intron | 35.0% |
| ! | GAATCTTCATTTTACGAGGA+CGG | - | chr6_4:53015355-53015374 | None:intergenic | 35.0% |
| !!! | TTTTTTTATTGGGGTACACG+TGG | + | chr6_4:53015488-53015507 | Msa0990690:intron | 35.0% |
| AATTTAAGGGTTTGATGTGC+TGG | - | chr6_4:53015833-53015852 | None:intergenic | 35.0% | |
| ACTCGTAAATTGAGGTGTAT+CGG | - | chr6_4:53016163-53016182 | None:intergenic | 35.0% | |
| TACGATACACTCGTAAATTG+AGG | - | chr6_4:53016171-53016190 | None:intergenic | 35.0% | |
| ! | TAGAAGCTCCCTATTTTCAA+TGG | + | chr6_4:53016189-53016208 | Msa0990690:intron | 35.0% |
| ATGAAATACCAAAAGGTGAG+TGG | + | chr6_4:53016459-53016478 | Msa0990690:CDS | 35.0% | |
| !!! | GATTTTTTCCACTCACCTTT+TGG | - | chr6_4:53016470-53016489 | None:intergenic | 35.0% |
| TGAGTGGAAAAAATCAAAGC+AGG | + | chr6_4:53016475-53016494 | Msa0990690:CDS | 35.0% | |
| !! | GCCAATTTTGATGAATGTTG+TGG | - | chr6_4:53016593-53016612 | None:intergenic | 35.0% |
| AGACTGATCAGGAAAAATGT+TGG | - | chr6_4:53016615-53016634 | None:intergenic | 35.0% | |
| TTCACTCTTCACCTCAACAA+CGG | + | chr6_4:53013062-53013081 | Msa0990690:CDS | 40.0% | |
| GTTGAAAGAGCCATTGAAGA+AGG | - | chr6_4:53013100-53013119 | None:intergenic | 40.0% | |
| AATGGCTCTTTCAACTGAGA+TGG | + | chr6_4:53013105-53013124 | Msa0990690:CDS | 40.0% | |
| ACTTCCCCAACAATTCTTAG+AGG | + | chr6_4:53013132-53013151 | Msa0990690:CDS | 40.0% | |
| CTTCCCCAACAATTCTTAGA+GGG | + | chr6_4:53013133-53013152 | Msa0990690:CDS | 40.0% | |
| ! | ACTTTTCAACGATGGCATTG+TGG | - | chr6_4:53013195-53013214 | None:intergenic | 40.0% |
| GCCATCGTTGAAAAGTCAAT+TGG | + | chr6_4:53013199-53013218 | Msa0990690:CDS | 40.0% | |
| !! | ACTCTTTTGAGGGAAGCAAA+GGG | + | chr6_4:53013393-53013412 | Msa0990690:CDS | 40.0% |
| ! | GTCAAAAGCGAACGTGATTT+TGG | - | chr6_4:53013593-53013612 | None:intergenic | 40.0% |
| ATATGAGTCATGTGCAGTGA+TGG | + | chr6_4:53013765-53013784 | Msa0990690:intron | 40.0% | |
| TATGAGTCATGTGCAGTGAT+GGG | + | chr6_4:53013766-53013785 | Msa0990690:intron | 40.0% | |
| ATCAACAAGTGCATCCTTGA+AGG | + | chr6_4:53013798-53013817 | Msa0990690:CDS | 40.0% | |
| TCCTTGAAGGCTATTGCAAA+CGG | + | chr6_4:53013811-53013830 | Msa0990690:CDS | 40.0% | |
| CTAAGGGCTGTGAATCAATT+TGG | + | chr6_4:53014051-53014070 | Msa0990690:CDS | 40.0% | |
| ! | GCATCTGAAATATAAGGGAG+GGG | - | chr6_4:53014160-53014179 | None:intergenic | 40.0% |
| ATATGCTCTCTTGTCAAACC+AGG | - | chr6_4:53014217-53014236 | None:intergenic | 40.0% | |
| GCATATTGCTAGCCATTTAC+AGG | + | chr6_4:53014231-53014250 | Msa0990690:CDS | 40.0% | |
| ! | TTTTGCACCTAAGGCAGTTT+TGG | - | chr6_4:53014455-53014474 | None:intergenic | 40.0% |
| ! | CCTTCTAAGTTTTGCACCTA+AGG | - | chr6_4:53014464-53014483 | None:intergenic | 40.0% |
| CCTTAGGTGCAAAACTTAGA+AGG | + | chr6_4:53014461-53014480 | Msa0990690:intron | 40.0% | |
| TAGGTGCAAAACTTAGAAGG+CGG | + | chr6_4:53014464-53014483 | Msa0990690:intron | 40.0% | |
| ! | CTTTCACGAAGTTGCGATTT+TGG | - | chr6_4:53014514-53014533 | None:intergenic | 40.0% |
| ATCGCAACTTCGTGAAAGTT+AGG | + | chr6_4:53014516-53014535 | Msa0990690:intron | 40.0% | |
| TCGCAACTTCGTGAAAGTTA+GGG | + | chr6_4:53014517-53014536 | Msa0990690:intron | 40.0% | |
| GAATGCACATCAATCAGTCT+AGG | + | chr6_4:53014740-53014759 | Msa0990690:intron | 40.0% | |
| AAAATCGAAGATATGGCAGG+GGG | - | chr6_4:53015068-53015087 | None:intergenic | 40.0% | |
| CAAAATCGAAGATATGGCAG+GGG | - | chr6_4:53015069-53015088 | None:intergenic | 40.0% | |
| ! | GTTTTACCCCCCTGTAATAT+AGG | - | chr6_4:53015190-53015209 | None:intergenic | 40.0% |
| ! | CTTTTACCCCCCTGTAATAT+AGG | + | chr6_4:53015287-53015306 | Msa0990690:intron | 40.0% |
| AAGTCACCTATATTACAGGG+GGG | - | chr6_4:53015296-53015315 | None:intergenic | 40.0% | |
| CGATTAAAGAACTCATCACC+TGG | - | chr6_4:53016827-53016846 | None:intergenic | 40.0% | |
| AACGATGGCATTGTGGATAG+TGG | - | chr6_4:53013188-53013207 | None:intergenic | 45.0% | |
| GCATTAGAGCATGTGGTAAC+TGG | - | chr6_4:53013360-53013379 | None:intergenic | 45.0% | |
| !! | GACTCTTTTGAGGGAAGCAA+AGG | + | chr6_4:53013392-53013411 | Msa0990690:CDS | 45.0% |
| CACACACACTTATGTGCAAC+AGG | + | chr6_4:53013559-53013578 | Msa0990690:intron | 45.0% | |
| CAATCAGTCACTCAAGCACA+AGG | - | chr6_4:53013701-53013720 | None:intergenic | 45.0% | |
| CCTTGAAGGCTATTGCAAAC+GGG | + | chr6_4:53013812-53013831 | Msa0990690:CDS | 45.0% | |
| CTTGAAGGCTATTGCAAACG+GGG | + | chr6_4:53013813-53013832 | Msa0990690:CDS | 45.0% | |
| ACATGTGCAAACACGTTCCA+AGG | + | chr6_4:53013881-53013900 | Msa0990690:CDS | 45.0% | |
| CGCAACTTCGTGAAAGTTAG+GGG | + | chr6_4:53014518-53014537 | Msa0990690:intron | 45.0% | |
| GCAACTTCGTGAAAGTTAGG+GGG | + | chr6_4:53014519-53014538 | Msa0990690:intron | 45.0% | |
| GAGATTCTGCTGAGTCATTG+GGG | - | chr6_4:53015396-53015415 | None:intergenic | 45.0% | |
| GGAGATTCTGCTGAGTCATT+GGG | - | chr6_4:53015397-53015416 | None:intergenic | 45.0% | |
| AGGAGATTCTGCTGAGTCAT+TGG | - | chr6_4:53015398-53015417 | None:intergenic | 45.0% | |
| ACTCAGCAGAATCTCCTACT+TGG | + | chr6_4:53015401-53015420 | Msa0990690:intron | 45.0% | |
| GTGAATGTCGGTGAATGTTG+TGG | - | chr6_4:53016773-53016792 | None:intergenic | 45.0% | |
| GATCAGTCCAACATGAATCC+AGG | + | chr6_4:53016806-53016825 | Msa0990690:CDS | 45.0% | |
| CTCATCACCTGGATTCATGT+TGG | - | chr6_4:53016816-53016835 | None:intergenic | 45.0% | |
| !!! | ATTTTTTATTTTTTTTATTG+GGG | + | chr6_4:53015479-53015498 | Msa0990690:intron | 5.0% |
| !! | TTAAAAAAAATAAAAAATTC+TGG | + | chr6_4:53015537-53015556 | Msa0990690:intron | 5.0% |
| !! | TAAAAAAAATTAAAAAATTC+TGG | + | chr6_4:53015587-53015606 | Msa0990690:intron | 5.0% |
| !! | AAAAATTAATTAAAAAATTC+TGG | + | chr6_4:53015668-53015687 | Msa0990690:intron | 5.0% |
| !! | AAAAAAATAATAAAAAATTC+TGG | + | chr6_4:53015720-53015739 | Msa0990690:intron | 5.0% |
| !! | TGTGCAGTGATGGGTGTTGA+TGG | + | chr6_4:53013775-53013794 | Msa0990690:intron | 50.0% |
| CCCGTTTGCAATAGCCTTCA+AGG | - | chr6_4:53013815-53013834 | None:intergenic | 50.0% | |
| AGCGTAGACCGGGTCAAAAT+TGG | + | chr6_4:53014420-53014439 | Msa0990690:intron | 50.0% | |
| !! | ACCGGGTCAAAATTGGCCTT+GGG | + | chr6_4:53014427-53014446 | Msa0990690:intron | 50.0% |
| !!! | GACTTTTGGTTTTGCCCCCT+AGG | + | chr6_4:53015311-53015330 | Msa0990690:intron | 50.0% |
| CAAGCACAAGGCGTGCTGAA+GGG | - | chr6_4:53013689-53013708 | None:intergenic | 55.0% | |
| TCAAGCACAAGGCGTGCTGA+AGG | - | chr6_4:53013690-53013709 | None:intergenic | 55.0% | |
| TAACACGTGGCACCTCACTG+AGG | + | chr6_4:53014387-53014406 | Msa0990690:intron | 55.0% | |
| CTGACGTGACATCCTCAGTG+AGG | - | chr6_4:53014402-53014421 | None:intergenic | 55.0% | |
| GATGTCACGTCAGCGTAGAC+CGG | + | chr6_4:53014409-53014428 | Msa0990690:intron | 55.0% | |
| ATGTCACGTCAGCGTAGACC+GGG | + | chr6_4:53014410-53014429 | Msa0990690:intron | 55.0% | |
| ! | GACCGGGTCAAAATTGGCCT+TGG | + | chr6_4:53014426-53014445 | Msa0990690:intron | 55.0% |
| !! | CCCCAAGGCCAATTTTGACC+CGG | - | chr6_4:53014431-53014450 | None:intergenic | 55.0% |
| !! | CCGGGTCAAAATTGGCCTTG+GGG | + | chr6_4:53014428-53014447 | Msa0990690:intron | 55.0% |
| !! | CGGGTCAAAATTGGCCTTGG+GGG | + | chr6_4:53014429-53014448 | Msa0990690:intron | 55.0% |
| !! | TAAGGCAGTTTTGGCCCCCA+AGG | - | chr6_4:53014446-53014465 | None:intergenic | 55.0% |
| TTGGGGGCCAAAACTGCCTT+AGG | + | chr6_4:53014445-53014464 | Msa0990690:intron | 55.0% | |
| TGCTGAGTCATTGGGGTCAG+GGG | - | chr6_4:53015389-53015408 | None:intergenic | 55.0% | |
| CTGCTGAGTCATTGGGGTCA+GGG | - | chr6_4:53015390-53015409 | None:intergenic | 55.0% | |
| TCTGCTGAGTCATTGGGGTC+AGG | - | chr6_4:53015391-53015410 | None:intergenic | 55.0% | |
| GTCAGCAGATTCTGCTGACG+TGG | + | chr6_4:53015432-53015451 | Msa0990690:intron | 55.0% | |
| GCTGAGTCATTGGGGTCAGG+GGG | - | chr6_4:53015388-53015407 | None:intergenic | 60.0% | |
| GCTGACGTCACGTGCCAAGT+AGG | - | chr6_4:53015418-53015437 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 53013049 | 53016862 | 53013049 | ID=Msa0990690;Name=Msa0990690 |
| chr6_4 | mRNA | 53013049 | 53016862 | 53013049 | ID=Msa0990690-mRNA-1;Parent=Msa0990690;Name=Msa0990690-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|5|0|389 |
| chr6_4 | exon | 53013049 | 53013235 | 53013049 | ID=Msa0990690-mRNA-1:exon:11059;Parent=Msa0990690-mRNA-1 |
| chr6_4 | exon | 53013361 | 53013513 | 53013361 | ID=Msa0990690-mRNA-1:exon:11060;Parent=Msa0990690-mRNA-1 |
| chr6_4 | exon | 53013782 | 53014081 | 53013782 | ID=Msa0990690-mRNA-1:exon:11061;Parent=Msa0990690-mRNA-1 |
| chr6_4 | exon | 53014176 | 53014252 | 53014176 | ID=Msa0990690-mRNA-1:exon:11062;Parent=Msa0990690-mRNA-1 |
| chr6_4 | exon | 53016410 | 53016862 | 53016410 | ID=Msa0990690-mRNA-1:exon:11063;Parent=Msa0990690-mRNA-1 |
| chr6_4 | CDS | 53013049 | 53013235 | 53013049 | ID=Msa0990690-mRNA-1:cds;Parent=Msa0990690-mRNA-1 |
| chr6_4 | CDS | 53013361 | 53013513 | 53013361 | ID=Msa0990690-mRNA-1:cds;Parent=Msa0990690-mRNA-1 |
| chr6_4 | CDS | 53013782 | 53014081 | 53013782 | ID=Msa0990690-mRNA-1:cds;Parent=Msa0990690-mRNA-1 |
| chr6_4 | CDS | 53014176 | 53014252 | 53014176 | ID=Msa0990690-mRNA-1:cds;Parent=Msa0990690-mRNA-1 |
| chr6_4 | CDS | 53016410 | 53016862 | 53016410 | ID=Msa0990690-mRNA-1:cds;Parent=Msa0990690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
