AlfalfaGEDB | Msa0990690

M. sativa cultivar zhongmu-4 / Msa0990690

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0990690	KEH26142.1	78.030	396	47	4	20	384	1	387	0.0	610

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0990690	sp\|Q8L9Y3\|ARR14_ARATH	38.224	259	123	5	32	253	6	264	4.39e-49	173

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0990690	A0A072U908	78.030	396	47	4	20	384	1	387	0.0	610

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TFs/TRs:

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Gene ID	Type	Classification
Msa0990690	TF	GARP-ARR-B

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0990690	MtrunA17_Chr6g0471041	81.967	366	48	3	20	376	1	357	0.0	604
Msa0990690	MtrunA17_Chr6g0471041	64.000	100	28	1	285	384	326	417	2.86e-29	117
Msa0990690	MtrunA17_Chr4g0009851	44.695	311	148	7	20	317	1	300	3.17e-69	220
Msa0990690	MtrunA17_Chr4g0009901	45.798	238	124	3	33	268	10	244	2.78e-60	196
Msa0990690	MtrunA17_Chr8g0383961	48.031	254	104	5	20	273	1	226	3.31e-60	195
Msa0990690	MtrunA17_Chr1g0161431	41.455	275	122	5	16	258	1	268	2.60e-58	200
Msa0990690	MtrunA17_Chr4g0009981	40.909	264	129	5	78	321	2	258	1.94e-51	172
Msa0990690	MtrunA17_Chr4g0067981	37.945	253	128	3	32	256	30	281	1.51e-48	174
Msa0990690	MtrunA17_Chr2g0294911	36.742	264	140	3	16	253	12	274	5.79e-48	172
Msa0990690	MtrunA17_Chr8g0376881	38.017	242	123	3	33	247	25	266	5.94e-47	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0990690	AT2G01760.1	38.224	259	123	5	32	253	6	264	4.47e-50	173
Msa0990690	AT2G01760.2	34.495	287	123	6	32	253	6	292	3.35e-44	158
Msa0990690	AT1G67710.1	39.044	251	121	7	36	255	10	259	5.50e-44	160
Msa0990690	AT3G16857.1	34.545	275	131	6	27	253	27	300	4.58e-43	159
Msa0990690	AT3G16857.2	34.545	275	131	6	27	253	27	300	6.07e-43	159
Msa0990690	AT2G25180.1	32.558	258	148	3	20	252	1	257	2.76e-37	142
Msa0990690	AT4G31920.1	34.524	252	150	5	20	257	1	251	9.20e-37	140
Msa0990690	AT3G16857.3	33.478	230	106	4	71	253	1	230	3.68e-35	137
Msa0990690	AT5G58080.1	31.660	259	150	5	20	253	1	257	2.49e-33	131
Msa0990690	AT2G01760.3	37.245	196	86	5	95	253	4	199	3.82e-33	126

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Find 54 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCATTAGAGCATG+TGG	0.613637	6_4:-53013364	None:intergenic
AAAAGAATCTCATGTTGATG+TGG	0.621750	6_4:+53013954	Msa0990690:CDS
AAACCCTCTAAGAATTGTTG+GGG	0.603847	6_4:-53013136	None:intergenic
AACAATTCTTAGAGGGTTTA+AGG	0.118099	6_4:+53013140	Msa0990690:CDS
AACGATGGCATTGTGGATAG+TGG	0.451069	6_4:-53013185	None:intergenic
AATGCATCAAGAATTTCTAA+GGG	0.619626	6_4:+53014035	Msa0990690:CDS
AATGGCTCTTTCAACTGAGA+TGG	0.494149	6_4:+53013105	Msa0990690:CDS
AATTGAAACTTACTTTAAAG+AGG	0.455987	6_4:+53016411	Msa0990690:CDS
AATTTGTTGGAGAAAATCAT+AGG	0.440238	6_4:-53013463	None:intergenic
ACAATTCTTAGAGGGTTTAA+GGG	0.385698	6_4:+53013141	Msa0990690:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATTCTTAGAGGGTTTA+AGG	+	chr6_4:53013140-53013159	Msa0990690:CDS	30.0%
ACAATTCTTAGAGGGTTTAA+GGG	+	chr6_4:53013141-53013160	Msa0990690:CDS	30.0%
AAAAGAATCTCATGTTGATG+TGG	+	chr6_4:53013954-53013973	Msa0990690:CDS	30.0%
CAATGCATCAAGAATTTCTA+AGG	+	chr6_4:53014034-53014053	Msa0990690:CDS	30.0%
TCAGTCTAGGAAATATTGAT+TGG	+	chr6_4:53014753-53014772	Msa0990690:intron	30.0%
GCTCATATATTGATAAAGAG+AGG	+	chr6_4:53014804-53014823	Msa0990690:intron	30.0%
GAAATGACTTATATTACAGG+GGG	-	chr6_4:53014866-53014885	None:intergenic	30.0%
GGAAATGACTTATATTACAG+GGG	-	chr6_4:53014867-53014886	None:intergenic	30.0%
CTGGAAATGACTTATATTAC+AGG	-	chr6_4:53014869-53014888	None:intergenic	30.0%
CCTGTAATTTGAGCAAATTT+AGG	+	chr6_4:53014975-53014994	Msa0990690:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	53013049	53016862	53013049	ID=Msa0990690;Name=Msa0990690
chr6_4	mRNA	53013049	53016862	53013049	ID=Msa0990690-mRNA-1;Parent=Msa0990690;Name=Msa0990690-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|5\|0\|389
chr6_4	exon	53013049	53013235	53013049	ID=Msa0990690-mRNA-1:exon:11059;Parent=Msa0990690-mRNA-1
chr6_4	exon	53013361	53013513	53013361	ID=Msa0990690-mRNA-1:exon:11060;Parent=Msa0990690-mRNA-1
chr6_4	exon	53013782	53014081	53013782	ID=Msa0990690-mRNA-1:exon:11061;Parent=Msa0990690-mRNA-1
chr6_4	exon	53014176	53014252	53014176	ID=Msa0990690-mRNA-1:exon:11062;Parent=Msa0990690-mRNA-1
chr6_4	exon	53016410	53016862	53016410	ID=Msa0990690-mRNA-1:exon:11063;Parent=Msa0990690-mRNA-1
chr6_4	CDS	53013049	53013235	53013049	ID=Msa0990690-mRNA-1:cds;Parent=Msa0990690-mRNA-1
chr6_4	CDS	53013361	53013513	53013361	ID=Msa0990690-mRNA-1:cds;Parent=Msa0990690-mRNA-1
chr6_4	CDS	53013782	53014081	53013782	ID=Msa0990690-mRNA-1:cds;Parent=Msa0990690-mRNA-1
chr6_4	CDS	53014176	53014252	53014176	ID=Msa0990690-mRNA-1:cds;Parent=Msa0990690-mRNA-1
chr6_4	CDS	53016410	53016862	53016410	ID=Msa0990690-mRNA-1:cds;Parent=Msa0990690-mRNA-1

Gene Sequence

>Msa0990690

ATGTTTCTTGAGTTTCACTCTTCACCTCAACAACGGTTTGCTTTAATCCCTTCTTCAATGGCTCTTTCAACTGAGATGGAAGCACTTCCCCAACAATTCTTAGAGGGTTTAAGGGTTCTTGTGATTGATCATGACACCACTATCCACAATGCCATCGTTGAAAAGTCAATTGGATGGGATTACAAAGTTACCACATGCTCTAATGCTTCTTTTGCATTGACTCTTTTGAGGGAAGCAAAGGGTTGTTTTGATGTGATACTAATTGAAGAACAAATCTCAGACATGAATTCCTATGATTTTCTCCAACAAATTACCCAACAAATCAATATTCCTGTCATTATGATGGGTGTTGATGGATCAACAAGTGCATCCTTGAAGGCTATTGCAAACGGGGCTTGTGAGTATTGTGTTAAGCCTTTGAGTGATGACCTAATCAAAAACATGTGCAAACACGTTCCAAGGAAAACTTTGAATGAAACTAAACATGATCAAATTCATGTTGATAATGGCACAAAAGAATCTCATGTTGATGTGGTTGAAAAGGATAATTATCAACCCCCAACAAAAAAGAACCGTTTAAAATGGTCTCAAGCAATGCATCAAGAATTTCTAAGGGCTGTGAATCAATTTGGCCTTGATAATGCAAAACCAAAAAAAATTATTCAAGTGATGAATGTTCCTGGTTTGACAAGAGAGCATATTGCTAGCCATTTACAGAAATTGAAACTTACTTTAAAGAGGTCAAATGAAGTGACACAGTTAAAGAATGAAATACCAAAAGGTGAGTGGAAAAAATCAAAGCAGGATCAATGTCATCTTGAAGCTGCTAAGTCAACGCCAGAACTTGATCAAAATGTTAAAAATCCAGTCATACAATGTGACAATAATTCTCATCCTCCACAACATTCATCAAAATTGGCCAACATTTTTCCTGATCAGTCTAATGTTTTGAATTCGATCATACAATATGACAATAATTATCATGCACTACAACATTCACTGACATTTACCAACAATTTTACTGATCAGTCTAGTATTCTAAATTCAGTCATACAATGTGTCAATAATTCTCATGCACCACAACATTCACCGACATTCACCAATATTTTTACTGATCAGTCCAACATGAATCCAGGTGATGAGTTCTTTAATCGACTGTTTAAGGAATAA

Protein sequence

>Msa0990690

MFLEFHSSPQQRFALIPSSMALSTEMEALPQQFLEGLRVLVIDHDTTIHNAIVEKSIGWDYKVTTCSNASFALTLLREAKGCFDVILIEEQISDMNSYDFLQQITQQINIPVIMMGVDGSTSASLKAIANGACEYCVKPLSDDLIKNMCKHVPRKTLNETKHDQIHVDNGTKESHVDVVEKDNYQPPTKKNRLKWSQAMHQEFLRAVNQFGLDNAKPKKIIQVMNVPGLTREHIASHLQKLKLTLKRSNEVTQLKNEIPKGEWKKSKQDQCHLEAAKSTPELDQNVKNPVIQCDNNSHPPQHSSKLANIFPDQSNVLNSIIQYDNNYHALQHSLTFTNNFTDQSSILNSVIQCVNNSHAPQHSPTFTNIFTDQSNMNPGDEFFNRLFKE*