Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993170 | KEH26454.1 | 80.243 | 577 | 83 | 6 | 1 | 556 | 95 | 661 | 0.0 | 904 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993170 | sp|Q9SLH0|EIL1_ARATH | 37.892 | 446 | 214 | 10 | 1 | 404 | 108 | 532 | 2.38e-86 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993170 | A0A072U9J0 | 80.243 | 577 | 83 | 6 | 1 | 556 | 95 | 661 | 0.0 | 904 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0993170 | TF | EIL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993170 | MtrunA17_Chr6g0476301 | 80.429 | 373 | 56 | 3 | 1 | 363 | 5 | 370 | 0.0 | 592 |
| Msa0993170 | MtrunA17_Chr6g0473191 | 84.589 | 292 | 36 | 1 | 1 | 283 | 5 | 296 | 1.00e-173 | 493 |
| Msa0993170 | MtrunA17_Chr6g0476291 | 86.090 | 266 | 37 | 0 | 1 | 266 | 5 | 270 | 4.70e-164 | 467 |
| Msa0993170 | MtrunA17_Chr3g0080401 | 51.705 | 352 | 144 | 9 | 1 | 347 | 5 | 335 | 2.98e-110 | 332 |
| Msa0993170 | MtrunA17_Chr3g0118361 | 59.307 | 231 | 85 | 4 | 1 | 229 | 110 | 333 | 2.44e-92 | 296 |
| Msa0993170 | MtrunA17_Chr5g0440591 | 58.036 | 224 | 93 | 1 | 1 | 224 | 107 | 329 | 2.26e-88 | 285 |
| Msa0993170 | MtrunA17_Chr2g0329151 | 59.184 | 196 | 77 | 2 | 1 | 196 | 98 | 290 | 2.02e-78 | 259 |
| Msa0993170 | MtrunA17_Chr3g0124291 | 52.821 | 195 | 89 | 3 | 1 | 193 | 87 | 280 | 3.04e-71 | 234 |
| Msa0993170 | MtrunA17_Chr8g0382561 | 52.792 | 197 | 87 | 4 | 1 | 193 | 77 | 271 | 1.54e-68 | 228 |
| Msa0993170 | MtrunA17_Chr7g0260281 | 62.222 | 45 | 17 | 0 | 6 | 50 | 21 | 65 | 4.32e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993170 | AT2G27050.1 | 37.892 | 446 | 214 | 10 | 1 | 404 | 108 | 532 | 2.42e-87 | 282 |
| Msa0993170 | AT3G20770.1 | 58.009 | 231 | 91 | 3 | 1 | 229 | 107 | 333 | 3.11e-85 | 277 |
| Msa0993170 | AT1G73730.2 | 58.673 | 196 | 76 | 2 | 1 | 196 | 86 | 276 | 7.04e-77 | 253 |
| Msa0993170 | AT1G73730.1 | 58.673 | 196 | 76 | 2 | 1 | 196 | 98 | 288 | 7.43e-77 | 254 |
| Msa0993170 | AT5G10120.1 | 55.897 | 195 | 84 | 1 | 1 | 193 | 81 | 275 | 3.57e-74 | 244 |
| Msa0993170 | AT5G65100.1 | 52.020 | 198 | 94 | 1 | 1 | 197 | 111 | 308 | 3.22e-68 | 231 |
| Msa0993170 | AT5G21120.2 | 50.251 | 199 | 97 | 2 | 1 | 197 | 116 | 314 | 1.08e-63 | 218 |
| Msa0993170 | AT5G21120.3 | 50.251 | 199 | 97 | 2 | 1 | 197 | 109 | 307 | 1.15e-63 | 218 |
| Msa0993170 | AT5G21120.1 | 50.251 | 199 | 97 | 2 | 1 | 197 | 109 | 307 | 1.15e-63 | 218 |
Find 113 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTATTGATTCCCTTTC+TGG | 0.088324 | 6_4:+65547824 | None:intergenic |
| CCAAATGGTTGTTTCCTTAA+TGG | 0.114788 | 6_4:+65549958 | None:intergenic |
| CAAATCCAACCATTTGAAAT+TGG | 0.189682 | 6_4:+65549564 | None:intergenic |
| TTCAGCAATTCGAATGTAAT+TGG | 0.211719 | 6_4:+65550286 | None:intergenic |
| TTCTCACATTTCTCTCTTGC+TGG | 0.213662 | 6_4:+65549651 | None:intergenic |
| CGGAGATTTCCATTGGAAAA+AGG | 0.266811 | 6_4:-65550196 | Msa0993170:CDS |
| ACAAGATAAACTCACCATTA+AGG | 0.284403 | 6_4:-65549972 | Msa0993170:CDS |
| CCATTTGAGGCTGCATGTTT+TGG | 0.297794 | 6_4:+65548082 | None:intergenic |
| AGATCATGAGGCTTTCTATA+AGG | 0.298040 | 6_4:+65550094 | None:intergenic |
| CTTTGATTGACACCGTGATT+TGG | 0.301125 | 6_4:+65548309 | None:intergenic |
| CTTGTTGACCATAGAAATTT+TGG | 0.306348 | 6_4:+65548058 | None:intergenic |
| TTGATGGACATATATAATTC+AGG | 0.341441 | 6_4:-65548435 | Msa0993170:CDS |
| TTCCTAATCTTCTGAATGTT+AGG | 0.342602 | 6_4:+65550019 | None:intergenic |
| AGAAGTGGTTTCTGATTTGA+TGG | 0.347106 | 6_4:-65548451 | Msa0993170:CDS |
| GATCATGAGGCTTTCTATAA+GGG | 0.348589 | 6_4:+65550095 | None:intergenic |
| CCTCCACCATGGTGGCCAAC+TGG | 0.352128 | 6_4:-65550169 | Msa0993170:CDS |
| GGTTTGGAAGGTTTATGTTT+TGG | 0.353709 | 6_4:-65550065 | Msa0993170:CDS |
| GATGCTCGTGGCTTCATCTA+TGG | 0.357885 | 6_4:-65550472 | Msa0993170:CDS |
| GCGGCACTAATGATGATAGA+AGG | 0.375221 | 6_4:+65550236 | None:intergenic |
| AACAACCAATTTCAAATGGT+TGG | 0.377578 | 6_4:-65549569 | Msa0993170:CDS |
| TGATAGAAGGGAACTTAATA+TGG | 0.382620 | 6_4:+65550249 | None:intergenic |
| GTTGAAACCATGTTCATAAC+TGG | 0.404127 | 6_4:+65548117 | None:intergenic |
| CAAATGGACCAAAATTTCTA+TGG | 0.408363 | 6_4:-65548066 | Msa0993170:CDS |
| CCAAAACATGCAGCCTCAAA+TGG | 0.412132 | 6_4:-65548082 | Msa0993170:CDS |
| CTCCTAACATTCAGAAGATT+AGG | 0.416065 | 6_4:-65550021 | Msa0993170:CDS |
| CGCCATGTTTCTTTCCCAGT+TGG | 0.423481 | 6_4:+65550154 | None:intergenic |
| AAACTTGATGATGCCACAAT+AGG | 0.424293 | 6_4:+65547865 | None:intergenic |
| CACTTGCATGGTAGATTTGA+TGG | 0.428886 | 6_4:+65548367 | None:intergenic |
| TTGATAATTTGTTGTTGTAA+TGG | 0.429080 | 6_4:+65550324 | None:intergenic |
| CGACAACAACCAATTTCAAA+TGG | 0.432725 | 6_4:-65549573 | Msa0993170:CDS |
| ATCATCGTCATCGTCATATG+AGG | 0.435233 | 6_4:-65549750 | Msa0993170:CDS |
| CTACCATGCAAGTGTTCAAC+AGG | 0.437195 | 6_4:-65548358 | Msa0993170:CDS |
| CTCATGATCTGAAGAAGGTT+TGG | 0.440824 | 6_4:-65550081 | Msa0993170:CDS |
| TTCTCTATGTTCTACCAGAA+AGG | 0.445940 | 6_4:-65547838 | Msa0993170:CDS |
| CCATTAAGGAAACAACCATT+TGG | 0.457496 | 6_4:-65549958 | Msa0993170:CDS |
| CATCAACATCAGATTGAGAA+TGG | 0.462050 | 6_4:+65547917 | None:intergenic |
| AACAAGAGAAAACGTGAACT+TGG | 0.466849 | 6_4:-65549722 | Msa0993170:CDS |
| GTTGAGGTATTTGCTTGCAT+TGG | 0.470104 | 6_4:+65547979 | None:intergenic |
| ATGAACATGGTTTCAACTCC+AGG | 0.471446 | 6_4:-65548111 | Msa0993170:CDS |
| TCTCTATGTTCTACCAGAAA+GGG | 0.474011 | 6_4:-65547837 | Msa0993170:CDS |
| ATTTATTCACTCTCCTATTG+TGG | 0.477150 | 6_4:-65547878 | Msa0993170:CDS |
| GAACACCATCATGAGTACTA+TGG | 0.478356 | 6_4:-65548148 | Msa0993170:CDS |
| CATCAGAAAATTTACGAGGC+TGG | 0.485103 | 6_4:-65550414 | Msa0993170:CDS |
| AATCAGATCATTCATCATAC+AGG | 0.485290 | 6_4:-65549473 | Msa0993170:intron |
| ACCATGTTCATAACTGGCAT+TGG | 0.487486 | 6_4:+65548123 | None:intergenic |
| ACAAATTATCAAAAGTTGAA+TGG | 0.494173 | 6_4:-65550313 | Msa0993170:CDS |
| TCTTTCCCAGTTGGCCACCA+TGG | 0.495265 | 6_4:+65550163 | None:intergenic |
| GAACACCGTCATGAGTACTA+TGG | 0.496291 | 6_4:-65548244 | Msa0993170:CDS |
| CTCCACCATGGTGGCCAACT+GGG | 0.496691 | 6_4:-65550168 | Msa0993170:CDS |
| ATTAATAATAGCAAACCAAA+TGG | 0.502082 | 6_4:+65549943 | None:intergenic |
| AAGGGAACTTAATATGGTAT+CGG | 0.502090 | 6_4:+65550255 | None:intergenic |
| AGAAACATGGCGGAATGAGA+TGG | 0.507988 | 6_4:-65550143 | Msa0993170:CDS |
| CAAAATTTCTATGGTCAACA+AGG | 0.508752 | 6_4:-65548057 | Msa0993170:CDS |
| AGGGAACTTAATATGGTATC+GGG | 0.509697 | 6_4:+65550256 | None:intergenic |
| CCAGTTGGCCACCATGGTGG+AGG | 0.511934 | 6_4:+65550169 | None:intergenic |
| AATGGAAATCTCCGTTGTGG+TGG | 0.514931 | 6_4:+65550205 | None:intergenic |
| ACATGAGCTACTTCAGCATT+AGG | 0.519078 | 6_4:+65548003 | None:intergenic |
| ACCACAACGGAGATTTCCAT+TGG | 0.522988 | 6_4:-65550203 | Msa0993170:CDS |
| TGAATCAAAGGTTGTTGTTG+AGG | 0.525190 | 6_4:+65547963 | None:intergenic |
| TTATGATTAACACCGGGAGT+TGG | 0.525458 | 6_4:+65548396 | None:intergenic |
| CAAACCTTCTTCAGATCATG+AGG | 0.527892 | 6_4:+65550082 | None:intergenic |
| TCTCCTGTTGAACACTTGCA+TGG | 0.543277 | 6_4:+65548355 | None:intergenic |
| TGATCTGAAGAAGGTTTGGA+AGG | 0.544263 | 6_4:-65550077 | Msa0993170:CDS |
| CTCATTGGTTTGCCCTCGTG+AGG | 0.546764 | 6_4:+65550442 | None:intergenic |
| TCATATTTAGCAATTGCCGC+TGG | 0.547452 | 6_4:+65550358 | None:intergenic |
| GAAACATGGCGGAATGAGAT+GGG | 0.549532 | 6_4:-65550142 | Msa0993170:CDS |
| CAGAAAATTTACGAGGCTGG+TGG | 0.554585 | 6_4:-65550411 | Msa0993170:CDS |
| ATGATCAAAAGATGAATCAA+AGG | 0.559551 | 6_4:+65547951 | None:intergenic |
| TGAATGATCTGATTTGCAAC+CGG | 0.563371 | 6_4:+65549482 | None:intergenic |
| TTCCCAGTTGGCCACCATGG+TGG | 0.564701 | 6_4:+65550166 | None:intergenic |
| GCTTGCACACGTTGGTCAAG+AGG | 0.566261 | 6_4:+65549512 | None:intergenic |
| TCCAATGGAAATCTCCGTTG+TGG | 0.567968 | 6_4:+65550202 | None:intergenic |
| AAAGCCTCATGATCTGAAGA+AGG | 0.573569 | 6_4:-65550086 | Msa0993170:CDS |
| AAGTAATTATGTGCTTGTTG+AGG | 0.574583 | 6_4:-65549852 | Msa0993170:CDS |
| AACAATGCAGGTAATTACTC+AGG | 0.576216 | 6_4:-65548480 | Msa0993170:intron |
| TCCAATGCCAGTTATGAACA+TGG | 0.576857 | 6_4:-65548124 | Msa0993170:CDS |
| ATGGGATTTAGTGAAGATCC+TGG | 0.581744 | 6_4:-65550124 | Msa0993170:CDS |
| ATCATGAGGCTTTCTATAAG+GGG | 0.587351 | 6_4:+65550096 | None:intergenic |
| CGGCACTAATGATGATAGAA+GGG | 0.589144 | 6_4:+65550237 | None:intergenic |
| GCAGGTAATTACTCAGGAGG+AGG | 0.589511 | 6_4:-65548474 | Msa0993170:intron |
| CACTTTACTAGTACACAACT+AGG | 0.591972 | 6_4:-65549620 | Msa0993170:CDS |
| ATGGAAATCTCCGTTGTGGT+GGG | 0.597513 | 6_4:+65550206 | None:intergenic |
| CTATGGAGTAATACCTCACG+AGG | 0.599594 | 6_4:-65550455 | Msa0993170:CDS |
| TCTTGACCAACGTGTGCAAG+CGG | 0.611381 | 6_4:-65549510 | Msa0993170:CDS |
| GTGCATGTTATGATTAACAC+CGG | 0.611942 | 6_4:+65548389 | None:intergenic |
| AGTACGATGATTCCAACTCC+CGG | 0.614991 | 6_4:-65548408 | Msa0993170:CDS |
| GGCAATTGCTAAATATGAAG+CGG | 0.618376 | 6_4:-65550353 | Msa0993170:CDS |
| GGCCAACTGGGAAAGAAACA+TGG | 0.618828 | 6_4:-65550156 | Msa0993170:CDS |
| TTACTCAGGAGGAGGAGAAG+TGG | 0.624741 | 6_4:-65548466 | Msa0993170:CDS |
| GGAACATTGTCAAACAGTCA+AGG | 0.631933 | 6_4:-65550000 | Msa0993170:CDS |
| AAAATTTCTATGGTCAACAA+GGG | 0.632348 | 6_4:-65548056 | Msa0993170:CDS |
| AAATTTCTATGGTCAACAAG+GGG | 0.633963 | 6_4:-65548055 | Msa0993170:CDS |
| TCATCGTCATCGTCATATGA+GGG | 0.642306 | 6_4:-65549749 | Msa0993170:CDS |
| TGGAACCATAGTACTCATGA+TGG | 0.643063 | 6_4:+65548143 | None:intergenic |
| CGTTGTGGTGGGTCGCAATG+CGG | 0.647311 | 6_4:+65550217 | None:intergenic |
| AGTACTATGATTCCAAATCA+CGG | 0.648005 | 6_4:-65548321 | Msa0993170:CDS |
| CGCATTGCGACCCACCACAA+CGG | 0.648689 | 6_4:-65550216 | Msa0993170:CDS |
| ATGCATCGTCAAATCTACAC+TGG | 0.648883 | 6_4:-65548285 | Msa0993170:CDS |
| ATGGAAGTTTGTGATGCTCG+TGG | 0.649462 | 6_4:-65550484 | Msa0993170:CDS |
| AATGCAGGTAATTACTCAGG+AGG | 0.654047 | 6_4:-65548477 | Msa0993170:intron |
| TGACCAACGTGTGCAAGCGG+CGG | 0.670768 | 6_4:-65549507 | Msa0993170:CDS |
| CACGAGGGCAAACCAATGAG+TGG | 0.675933 | 6_4:-65550439 | Msa0993170:CDS |
| TCATGAGGCTTTCTATAAGG+GGG | 0.678672 | 6_4:+65550097 | None:intergenic |
| GACGATGACGATGATGCTGA+TGG | 0.679077 | 6_4:+65549758 | None:intergenic |
| AATTTCTATGGTCAACAAGG+GGG | 0.688284 | 6_4:-65548054 | Msa0993170:CDS |
| TGCATGTTATGATTAACACC+GGG | 0.698948 | 6_4:+65548390 | None:intergenic |
| GTACCGCCGCTTGCACACGT+TGG | 0.701357 | 6_4:+65549504 | None:intergenic |
| AAGGCATTCCTCCACCATGG+TGG | 0.706316 | 6_4:-65550177 | Msa0993170:CDS |
| ACACTTGAAGTGTAGACTTG+AGG | 0.709845 | 6_4:+65548189 | None:intergenic |
| TGGAACCATAGTACTCATGA+CGG | 0.712441 | 6_4:+65548239 | None:intergenic |
| GGTTCATCAGAAAATTTACG+AGG | 0.727192 | 6_4:-65550418 | Msa0993170:CDS |
| CAACTGGGAAAGAAACATGG+CGG | 0.755443 | 6_4:-65550153 | Msa0993170:CDS |
| TATGGAGTAATACCTCACGA+GGG | 0.784582 | 6_4:-65550454 | Msa0993170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGGTATTTTTATTTAAAT+AGG | - | chr6_4:65549035-65549054 | Msa0993170:intron | 10.0% |
| !!! | TAAATGATATATTAGCTTAT+AGG | - | chr6_4:65548983-65549002 | Msa0993170:intron | 15.0% |
| !!! | GTCATATTTATTTTTCTTTT+GGG | + | chr6_4:65549463-65549482 | None:intergenic | 15.0% |
| !!! | TGTCATATTTATTTTTCTTT+TGG | + | chr6_4:65549464-65549483 | None:intergenic | 15.0% |
| !! | CTACTTCATTATATATTATT+TGG | - | chr6_4:65549508-65549527 | Msa0993170:CDS | 15.0% |
| !! | TTTAAACCAATAAAATTGTT+TGG | + | chr6_4:65549539-65549558 | None:intergenic | 15.0% |
| !! | ATAGTTAAATTCGACAAAAA+CGG | - | chr6_4:65547930-65547949 | Msa0993170:CDS | 20.0% |
| !!! | TTGATAATTTGTTGTTGTAA+TGG | + | chr6_4:65547991-65548010 | None:intergenic | 20.0% |
| !! | ACAAATTATCAAAAGTTGAA+TGG | - | chr6_4:65547999-65548018 | Msa0993170:CDS | 20.0% |
| !! | ATTAATAATAGCAAACCAAA+TGG | + | chr6_4:65548372-65548391 | None:intergenic | 20.0% |
| !! | ATAGGAAAATGTTAGATTAT+AGG | - | chr6_4:65549053-65549072 | Msa0993170:intron | 20.0% |
| !! | TATAATTCACAATGTGATTA+TGG | - | chr6_4:65549393-65549412 | Msa0993170:intron | 20.0% |
| ! | TCAAAACTTGAGAAAAATTC+AGG | + | chr6_4:65548425-65548444 | None:intergenic | 25.0% |
| ! | AAGAGAAAAAAATAAGTGTG+TGG | + | chr6_4:65548888-65548907 | None:intergenic | 25.0% |
| ! | GATTCAAGTCATAAATCAAA+TGG | + | chr6_4:65548942-65548961 | None:intergenic | 25.0% |
| !!! | GCTTGTTTCTAACTTAAAAA+AGG | - | chr6_4:65549017-65549036 | Msa0993170:intron | 25.0% |
| ! | ATGAAGCTAACAATATTGTA+AGG | + | chr6_4:65549309-65549328 | None:intergenic | 25.0% |
| !! | GTTACTCCAAACAATTTTAT+TGG | - | chr6_4:65549530-65549549 | Msa0993170:CDS | 25.0% |
| !! | TTGATGGACATATATAATTC+AGG | - | chr6_4:65549877-65549896 | Msa0993170:CDS | 25.0% |
| ! | AAAATTTCTATGGTCAACAA+GGG | - | chr6_4:65550256-65550275 | Msa0993170:CDS | 25.0% |
| ! | ATGATCAAAAGATGAATCAA+AGG | + | chr6_4:65550364-65550383 | None:intergenic | 25.0% |
| TTCAGCAATTCGAATGTAAT+TGG | + | chr6_4:65548029-65548048 | None:intergenic | 30.0% | |
| AAGGGAACTTAATATGGTAT+CGG | + | chr6_4:65548060-65548079 | None:intergenic | 30.0% | |
| TGATAGAAGGGAACTTAATA+TGG | + | chr6_4:65548066-65548085 | None:intergenic | 30.0% | |
| TTCCTAATCTTCTGAATGTT+AGG | + | chr6_4:65548296-65548315 | None:intergenic | 30.0% | |
| ACAAGATAAACTCACCATTA+AGG | - | chr6_4:65548340-65548359 | Msa0993170:CDS | 30.0% | |
| !!! | AGTTTTGATTCTTGTGTTGA+AGG | - | chr6_4:65548437-65548456 | Msa0993170:CDS | 30.0% |
| ! | AAGTAATTATGTGCTTGTTG+AGG | - | chr6_4:65548460-65548479 | Msa0993170:CDS | 30.0% |
| !! | GGAAAATGATTTTGATGTTG+TGG | - | chr6_4:65548481-65548500 | Msa0993170:intron | 30.0% |
| !! | AATGATTTTGATGTTGTGGA+AGG | - | chr6_4:65548485-65548504 | Msa0993170:intron | 30.0% |
| AACAACCAATTTCAAATGGT+TGG | - | chr6_4:65548743-65548762 | Msa0993170:intron | 30.0% | |
| ! | CAAATCCAACCATTTGAAAT+TGG | + | chr6_4:65548751-65548770 | None:intergenic | 30.0% |
| AATCAGATCATTCATCATAC+AGG | - | chr6_4:65548839-65548858 | Msa0993170:intron | 30.0% | |
| ATTCATCATACAGGTAATCA+TGG | - | chr6_4:65548848-65548867 | Msa0993170:intron | 30.0% | |
| TAAGTTAGAAACAAGCAACT+TGG | + | chr6_4:65549013-65549032 | None:intergenic | 30.0% | |
| AGTTATGATGTCGAAAATTG+AGG | + | chr6_4:65549079-65549098 | None:intergenic | 30.0% | |
| ATAACTCACCATCTTACAAT+AGG | - | chr6_4:65549093-65549112 | Msa0993170:intron | 30.0% | |
| !! | AGCTTTTTCCTATTGTAAGA+TGG | + | chr6_4:65549104-65549123 | None:intergenic | 30.0% |
| TGGGTGTGTGAATAATAATT+TGG | + | chr6_4:65549181-65549200 | None:intergenic | 30.0% | |
| ATTCACAATGTGATTATGGT+CGG | - | chr6_4:65549397-65549416 | Msa0993170:intron | 30.0% | |
| ! | AGCTAACACAATTTTTACGA+GGG | + | chr6_4:65549786-65549805 | None:intergenic | 30.0% |
| ! | AAGCTAACACAATTTTTACG+AGG | + | chr6_4:65549787-65549806 | None:intergenic | 30.0% |
| AGTAATTACCTGCATTGTTA+TGG | + | chr6_4:65549831-65549850 | None:intergenic | 30.0% | |
| AGTACTATGATTCCAAATCA+CGG | - | chr6_4:65549991-65550010 | Msa0993170:CDS | 30.0% | |
| !! | TAGAAATTTTGGTCCATTTG+AGG | + | chr6_4:65550246-65550265 | None:intergenic | 30.0% |
| CAAATGGACCAAAATTTCTA+TGG | - | chr6_4:65550246-65550265 | Msa0993170:CDS | 30.0% | |
| ! | CTTGTTGACCATAGAAATTT+TGG | + | chr6_4:65550257-65550276 | None:intergenic | 30.0% |
| CAAAATTTCTATGGTCAACA+AGG | - | chr6_4:65550255-65550274 | Msa0993170:CDS | 30.0% | |
| AAATTTCTATGGTCAACAAG+GGG | - | chr6_4:65550257-65550276 | Msa0993170:CDS | 30.0% | |
| ATTTATTCACTCTCCTATTG+TGG | - | chr6_4:65550434-65550453 | Msa0993170:CDS | 30.0% | |
| ! | TTTTCTGATGAACCACTCAT+TGG | + | chr6_4:65547888-65547907 | None:intergenic | 35.0% |
| GGTTCATCAGAAAATTTACG+AGG | - | chr6_4:65547894-65547913 | Msa0993170:CDS | 35.0% | |
| GGCAATTGCTAAATATGAAG+CGG | - | chr6_4:65547959-65547978 | Msa0993170:CDS | 35.0% | |
| AGGGAACTTAATATGGTATC+GGG | + | chr6_4:65548059-65548078 | None:intergenic | 35.0% | |
| ATCATGAGGCTTTCTATAAG+GGG | + | chr6_4:65548219-65548238 | None:intergenic | 35.0% | |
| GATCATGAGGCTTTCTATAA+GGG | + | chr6_4:65548220-65548239 | None:intergenic | 35.0% | |
| AGATCATGAGGCTTTCTATA+AGG | + | chr6_4:65548221-65548240 | None:intergenic | 35.0% | |
| ! | GGTTTGGAAGGTTTATGTTT+TGG | - | chr6_4:65548247-65548266 | Msa0993170:CDS | 35.0% |
| CTCCTAACATTCAGAAGATT+AGG | - | chr6_4:65548291-65548310 | Msa0993170:CDS | 35.0% | |
| ! | CCAAATGGTTGTTTCCTTAA+TGG | + | chr6_4:65548357-65548376 | None:intergenic | 35.0% |
| CCATTAAGGAAACAACCATT+TGG | - | chr6_4:65548354-65548373 | Msa0993170:CDS | 35.0% | |
| AACAAGAGAAAACGTGAACT+TGG | - | chr6_4:65548590-65548609 | Msa0993170:intron | 35.0% | |
| CACTTTACTAGTACACAACT+AGG | - | chr6_4:65548692-65548711 | Msa0993170:intron | 35.0% | |
| CGACAACAACCAATTTCAAA+TGG | - | chr6_4:65548739-65548758 | Msa0993170:intron | 35.0% | |
| ! | TGAATGATCTGATTTGCAAC+CGG | + | chr6_4:65548833-65548852 | None:intergenic | 35.0% |
| !! | TGCATTTTGGCACAATTCAT+GGG | + | chr6_4:65549220-65549239 | None:intergenic | 35.0% |
| TTCACAATGTGATTATGGTC+GGG | - | chr6_4:65549398-65549417 | Msa0993170:intron | 35.0% | |
| ! | CTAACACAATTTTTACGAGG+GGG | + | chr6_4:65549784-65549803 | None:intergenic | 35.0% |
| ! | GCTAACACAATTTTTACGAG+GGG | + | chr6_4:65549785-65549804 | None:intergenic | 35.0% |
| GTTATGGAATCCATAATCAG+CGG | + | chr6_4:65549815-65549834 | None:intergenic | 35.0% | |
| TATGGATTCCATAACAATGC+AGG | - | chr6_4:65549820-65549839 | Msa0993170:CDS | 35.0% | |
| AACAATGCAGGTAATTACTC+AGG | - | chr6_4:65549832-65549851 | Msa0993170:CDS | 35.0% | |
| ! | AGAAGTGGTTTCTGATTTGA+TGG | - | chr6_4:65549861-65549880 | Msa0993170:CDS | 35.0% |
| TGCATGTTATGATTAACACC+GGG | + | chr6_4:65549925-65549944 | None:intergenic | 35.0% | |
| GTGCATGTTATGATTAACAC+CGG | + | chr6_4:65549926-65549945 | None:intergenic | 35.0% | |
| ! | TTTTGATGAACACTAGGAGT+TGG | + | chr6_4:65550096-65550115 | None:intergenic | 35.0% |
| !! | TGCAAGTTTTGATGAACACT+AGG | + | chr6_4:65550102-65550121 | None:intergenic | 35.0% |
| GTTGAAACCATGTTCATAAC+TGG | + | chr6_4:65550198-65550217 | None:intergenic | 35.0% | |
| !!! | TGCATGTTTTGGTTAAATCC+TGG | + | chr6_4:65550222-65550241 | None:intergenic | 35.0% |
| AATTTCTATGGTCAACAAGG+GGG | - | chr6_4:65550258-65550277 | Msa0993170:CDS | 35.0% | |
| ! | TGAATCAAAGGTTGTTGTTG+AGG | + | chr6_4:65550352-65550371 | None:intergenic | 35.0% |
| CATCAACATCAGATTGAGAA+TGG | + | chr6_4:65550398-65550417 | None:intergenic | 35.0% | |
| !! | AAACTTGATGATGCCACAAT+AGG | + | chr6_4:65550450-65550469 | None:intergenic | 35.0% |
| TTCTCTATGTTCTACCAGAA+AGG | - | chr6_4:65550474-65550493 | Msa0993170:CDS | 35.0% | |
| TCTCTATGTTCTACCAGAAA+GGG | - | chr6_4:65550475-65550494 | Msa0993170:CDS | 35.0% | |
| TATGGAGTAATACCTCACGA+GGG | - | chr6_4:65547858-65547877 | Msa0993170:CDS | 40.0% | |
| CATCAGAAAATTTACGAGGC+TGG | - | chr6_4:65547898-65547917 | Msa0993170:CDS | 40.0% | |
| TCATATTTAGCAATTGCCGC+TGG | + | chr6_4:65547957-65547976 | None:intergenic | 40.0% | |
| CGGCACTAATGATGATAGAA+GGG | + | chr6_4:65548078-65548097 | None:intergenic | 40.0% | |
| CGGAGATTTCCATTGGAAAA+AGG | - | chr6_4:65548116-65548135 | Msa0993170:CDS | 40.0% | |
| ATGGGATTTAGTGAAGATCC+TGG | - | chr6_4:65548188-65548207 | Msa0993170:CDS | 40.0% | |
| TCATGAGGCTTTCTATAAGG+GGG | + | chr6_4:65548218-65548237 | None:intergenic | 40.0% | |
| AAAGCCTCATGATCTGAAGA+AGG | - | chr6_4:65548226-65548245 | Msa0993170:CDS | 40.0% | |
| CAAACCTTCTTCAGATCATG+AGG | + | chr6_4:65548233-65548252 | None:intergenic | 40.0% | |
| CTCATGATCTGAAGAAGGTT+TGG | - | chr6_4:65548231-65548250 | Msa0993170:CDS | 40.0% | |
| TGATCTGAAGAAGGTTTGGA+AGG | - | chr6_4:65548235-65548254 | Msa0993170:CDS | 40.0% | |
| GGAACATTGTCAAACAGTCA+AGG | - | chr6_4:65548312-65548331 | Msa0993170:CDS | 40.0% | |
| !! | GATTTTGATGTTGTGGAAGG+CGG | - | chr6_4:65548488-65548507 | Msa0993170:intron | 40.0% |
| ATCATCGTCATCGTCATATG+AGG | - | chr6_4:65548562-65548581 | Msa0993170:intron | 40.0% | |
| TCATCGTCATCGTCATATGA+GGG | - | chr6_4:65548563-65548582 | Msa0993170:intron | 40.0% | |
| TTCTCACATTTCTCTCTTGC+TGG | + | chr6_4:65548664-65548683 | None:intergenic | 40.0% | |
| !! | ATTTTGGCACAATTCATGGG+TGG | + | chr6_4:65549217-65549236 | None:intergenic | 40.0% |
| !! | CTGCATTTTGGCACAATTCA+TGG | + | chr6_4:65549221-65549240 | None:intergenic | 40.0% |
| GTGCCAAAATGCAGATCTAA+TGG | - | chr6_4:65549227-65549246 | Msa0993170:intron | 40.0% | |
| ! | GCACCATTAGATCTGCATTT+TGG | + | chr6_4:65549233-65549252 | None:intergenic | 40.0% |
| TAATGGTGCAGTTCTTTCGT+GGG | - | chr6_4:65549244-65549263 | Msa0993170:intron | 40.0% | |
| ! | TCGTGGGTTATTCTTGAACT+TGG | - | chr6_4:65549260-65549279 | Msa0993170:intron | 40.0% |
| TCACAATGTGATTATGGTCG+GGG | - | chr6_4:65549399-65549418 | Msa0993170:intron | 40.0% | |
| AATGCAGGTAATTACTCAGG+AGG | - | chr6_4:65549835-65549854 | Msa0993170:CDS | 40.0% | |
| TTATGATTAACACCGGGAGT+TGG | + | chr6_4:65549919-65549938 | None:intergenic | 40.0% | |
| CACTTGCATGGTAGATTTGA+TGG | + | chr6_4:65549948-65549967 | None:intergenic | 40.0% | |
| CTTTGATTGACACCGTGATT+TGG | + | chr6_4:65550006-65550025 | None:intergenic | 40.0% | |
| ATGCATCGTCAAATCTACAC+TGG | - | chr6_4:65550027-65550046 | Msa0993170:CDS | 40.0% | |
| TGGAACCATAGTACTCATGA+CGG | + | chr6_4:65550076-65550095 | None:intergenic | 40.0% | |
| ACACTTGAAGTGTAGACTTG+AGG | + | chr6_4:65550126-65550145 | None:intergenic | 40.0% | |
| GAACACCATCATGAGTACTA+TGG | - | chr6_4:65550164-65550183 | Msa0993170:CDS | 40.0% | |
| TGGAACCATAGTACTCATGA+TGG | + | chr6_4:65550076-65550095 | None:intergenic | 40.0% | |
| TCCAATGCCAGTTATGAACA+TGG | - | chr6_4:65550188-65550207 | Msa0993170:CDS | 40.0% | |
| ACCATGTTCATAACTGGCAT+TGG | + | chr6_4:65550192-65550211 | None:intergenic | 40.0% | |
| ATGAACATGGTTTCAACTCC+AGG | - | chr6_4:65550201-65550220 | Msa0993170:CDS | 40.0% | |
| ACATGAGCTACTTCAGCATT+AGG | + | chr6_4:65550312-65550331 | None:intergenic | 40.0% | |
| ! | GTTGAGGTATTTGCTTGCAT+TGG | + | chr6_4:65550336-65550355 | None:intergenic | 40.0% |
| ATGGAAGTTTGTGATGCTCG+TGG | - | chr6_4:65547828-65547847 | Msa0993170:CDS | 45.0% | |
| CTATGGAGTAATACCTCACG+AGG | - | chr6_4:65547857-65547876 | Msa0993170:CDS | 45.0% | |
| CAGAAAATTTACGAGGCTGG+TGG | - | chr6_4:65547901-65547920 | Msa0993170:CDS | 45.0% | |
| ATTCGACAAAAACGGTCCAG+CGG | - | chr6_4:65547938-65547957 | Msa0993170:CDS | 45.0% | |
| GCGGCACTAATGATGATAGA+AGG | + | chr6_4:65548079-65548098 | None:intergenic | 45.0% | |
| ATGGAAATCTCCGTTGTGGT+GGG | + | chr6_4:65548109-65548128 | None:intergenic | 45.0% | |
| AATGGAAATCTCCGTTGTGG+TGG | + | chr6_4:65548110-65548129 | None:intergenic | 45.0% | |
| ACCACAACGGAGATTTCCAT+TGG | - | chr6_4:65548109-65548128 | Msa0993170:CDS | 45.0% | |
| TCCAATGGAAATCTCCGTTG+TGG | + | chr6_4:65548113-65548132 | None:intergenic | 45.0% | |
| ! | GGAGGAATGCCTTTTTCCAA+TGG | + | chr6_4:65548128-65548147 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTCCTCCACCA+TGG | - | chr6_4:65548132-65548151 | Msa0993170:CDS | 45.0% |
| CAACTGGGAAAGAAACATGG+CGG | - | chr6_4:65548159-65548178 | Msa0993170:CDS | 45.0% | |
| ! | AGAAACATGGCGGAATGAGA+TGG | - | chr6_4:65548169-65548188 | Msa0993170:CDS | 45.0% |
| ! | GAAACATGGCGGAATGAGAT+GGG | - | chr6_4:65548170-65548189 | Msa0993170:CDS | 45.0% |
| ! | TTTCTATAAGGGGGTATGCC+AGG | + | chr6_4:65548209-65548228 | None:intergenic | 45.0% |
| CTTGCATGCAAAACGTGTCT+TGG | + | chr6_4:65549158-65549177 | None:intergenic | 45.0% | |
| CTAATGGTGCAGTTCTTTCG+TGG | - | chr6_4:65549243-65549262 | Msa0993170:intron | 45.0% | |
| CACAATGTGATTATGGTCGG+GGG | - | chr6_4:65549400-65549419 | Msa0993170:intron | 45.0% | |
| ACAATGTGATTATGGTCGGG+GGG | - | chr6_4:65549401-65549420 | Msa0993170:intron | 45.0% | |
| GCGAATCCCTTCACATCAAT+GGG | - | chr6_4:65549424-65549443 | Msa0993170:intron | 45.0% | |
| CGAATCCCTTCACATCAATG+GGG | - | chr6_4:65549425-65549444 | Msa0993170:intron | 45.0% | |
| TGCTACCCCATTGATGTGAA+GGG | + | chr6_4:65549433-65549452 | None:intergenic | 45.0% | |
| ATGCTACCCCATTGATGTGA+AGG | + | chr6_4:65549434-65549453 | None:intergenic | 45.0% | |
| TCACATCAATGGGGTAGCAT+TGG | - | chr6_4:65549434-65549453 | Msa0993170:intron | 45.0% | |
| ATGGAATCCATAATCAGCGG+CGG | + | chr6_4:65549812-65549831 | None:intergenic | 45.0% | |
| AGTACGATGATTCCAACTCC+CGG | - | chr6_4:65549904-65549923 | Msa0993170:CDS | 45.0% | |
| CTACCATGCAAGTGTTCAAC+AGG | - | chr6_4:65549954-65549973 | Msa0993170:CDS | 45.0% | |
| TCTCCTGTTGAACACTTGCA+TGG | + | chr6_4:65549960-65549979 | None:intergenic | 45.0% | |
| GAACACCGTCATGAGTACTA+TGG | - | chr6_4:65550068-65550087 | Msa0993170:CDS | 45.0% | |
| !! | CCATTTGAGGCTGCATGTTT+TGG | + | chr6_4:65550233-65550252 | None:intergenic | 45.0% |
| CCAAAACATGCAGCCTCAAA+TGG | - | chr6_4:65550230-65550249 | Msa0993170:CDS | 45.0% | |
| GATGCTCGTGGCTTCATCTA+TGG | - | chr6_4:65547840-65547859 | Msa0993170:CDS | 50.0% | |
| GGCCAACTGGGAAAGAAACA+TGG | - | chr6_4:65548156-65548175 | Msa0993170:CDS | 50.0% | |
| CGCCATGTTTCTTTCCCAGT+TGG | + | chr6_4:65548161-65548180 | None:intergenic | 50.0% | |
| GACGATGACGATGATGCTGA+TGG | + | chr6_4:65548557-65548576 | None:intergenic | 50.0% | |
| TCTTGACCAACGTGTGCAAG+CGG | - | chr6_4:65548802-65548821 | Msa0993170:intron | 50.0% | |
| !! | GGGTGGTGGGCAAAATACAT+GGG | + | chr6_4:65549200-65549219 | None:intergenic | 50.0% |
| !! | TGGGTGGTGGGCAAAATACA+TGG | + | chr6_4:65549201-65549220 | None:intergenic | 50.0% |
| TGGCACAATTCATGGGTGGT+GGG | + | chr6_4:65549213-65549232 | None:intergenic | 50.0% | |
| TTGGCACAATTCATGGGTGG+TGG | + | chr6_4:65549214-65549233 | None:intergenic | 50.0% | |
| CAATGTGATTATGGTCGGGG+GGG | - | chr6_4:65549402-65549421 | Msa0993170:intron | 50.0% | |
| GGCGAATCCCTTCACATCAA+TGG | - | chr6_4:65549423-65549442 | Msa0993170:intron | 50.0% | |
| GCAGGTAATTACTCAGGAGG+AGG | - | chr6_4:65549838-65549857 | Msa0993170:CDS | 50.0% | |
| TTACTCAGGAGGAGGAGAAG+TGG | - | chr6_4:65549846-65549865 | Msa0993170:CDS | 50.0% | |
| !! | CTCATTGGTTTGCCCTCGTG+AGG | + | chr6_4:65547873-65547892 | None:intergenic | 55.0% |
| CACGAGGGCAAACCAATGAG+TGG | - | chr6_4:65547873-65547892 | Msa0993170:CDS | 55.0% | |
| ! | AAGGCATTCCTCCACCATGG+TGG | - | chr6_4:65548135-65548154 | Msa0993170:CDS | 55.0% |
| TCTTTCCCAGTTGGCCACCA+TGG | + | chr6_4:65548152-65548171 | None:intergenic | 55.0% | |
| GCTTGCACACGTTGGTCAAG+AGG | + | chr6_4:65548803-65548822 | None:intergenic | 55.0% | |
| !! | CGTTGTGGTGGGTCGCAATG+CGG | + | chr6_4:65548098-65548117 | None:intergenic | 60.0% |
| CGCATTGCGACCCACCACAA+CGG | - | chr6_4:65548096-65548115 | Msa0993170:CDS | 60.0% | |
| CTCCACCATGGTGGCCAACT+GGG | - | chr6_4:65548144-65548163 | Msa0993170:CDS | 60.0% | |
| TTCCCAGTTGGCCACCATGG+TGG | + | chr6_4:65548149-65548168 | None:intergenic | 60.0% | |
| TGACCAACGTGTGCAAGCGG+CGG | - | chr6_4:65548805-65548824 | Msa0993170:intron | 60.0% | |
| ! | AGCTTCGCCGCCGCTGATTA+TGG | - | chr6_4:65549802-65549821 | Msa0993170:CDS | 60.0% |
| CCAGTTGGCCACCATGGTGG+AGG | + | chr6_4:65548146-65548165 | None:intergenic | 65.0% | |
| CCTCCACCATGGTGGCCAAC+TGG | - | chr6_4:65548143-65548162 | Msa0993170:CDS | 65.0% | |
| GTACCGCCGCTTGCACACGT+TGG | + | chr6_4:65548811-65548830 | None:intergenic | 65.0% | |
| ACGTGTGCAAGCGGCGGTAC+CGG | - | chr6_4:65548811-65548830 | Msa0993170:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 65547828 | 65550506 | 65547828 | ID=Msa0993170;Name=Msa0993170 |
| chr6_4 | mRNA | 65547828 | 65550506 | 65547828 | ID=Msa0993170-mRNA-1;Parent=Msa0993170;Name=Msa0993170-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|1|1|2|0|565 |
| chr6_4 | exon | 65549474 | 65550506 | 65549474 | ID=Msa0993170-mRNA-1:exon:12189;Parent=Msa0993170-mRNA-1 |
| chr6_4 | exon | 65547828 | 65548492 | 65547828 | ID=Msa0993170-mRNA-1:exon:12188;Parent=Msa0993170-mRNA-1 |
| chr6_4 | CDS | 65549474 | 65550506 | 65549474 | ID=Msa0993170-mRNA-1:cds;Parent=Msa0993170-mRNA-1 |
| chr6_4 | CDS | 65547828 | 65548492 | 65547828 | ID=Msa0993170-mRNA-1:cds;Parent=Msa0993170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
