AlfalfaGEDB | Msa0993270

M. sativa cultivar zhongmu-4 / Msa0993270

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993270	PNX89196.1	72.881	177	48	0	65	241	7	183	9.00e-86	266

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993270	sp\|Q9LKR4\|FRS10_ARATH	37.405	131	79	2	93	221	61	190	2.25e-17	84.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993270	A0A2K3MEL2	72.881	177	48	0	65	241	7	183	4.30e-86	266

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TFs/TRs:

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Gene ID	Type	Classification
Msa0993270	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993270	MtrunA17_Chr1g0203051	36.087	230	127	3	16	241	20	233	1.11e-44	158
Msa0993270	MtrunA17_Chr1g0171741	40.741	162	94	2	56	217	103	262	3.27e-34	124
Msa0993270	MtrunA17_Chr8g0389811	36.567	134	85	0	65	198	62	195	3.17e-29	109
Msa0993270	MtrunA17_Chr2g0331371	42.400	125	72	0	74	198	42	166	4.62e-28	106
Msa0993270	MtrunA17_Chr2g0287651	33.974	156	103	0	86	241	74	229	3.83e-27	109
Msa0993270	MtrunA17_Chr6g0473421	44.944	89	49	0	74	162	42	130	7.94e-23	91.3
Msa0993270	MtrunA17_Chr1g0172931	38.261	115	69	1	55	169	46	158	4.86e-21	86.7
Msa0993270	MtrunA17_Chr1g0198761	33.557	149	84	5	85	220	42	188	7.51e-15	73.9
Msa0993270	MtrunA17_Chr2g0276841	32.867	143	89	4	93	230	76	216	8.13e-15	73.6
Msa0993270	MtrunA17_Chr2g0290391	34.483	145	92	2	93	235	57	200	9.34e-15	73.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993270	AT5G28530.3	37.405	131	79	2	93	221	61	190	2.20e-18	84.7
Msa0993270	AT5G28530.2	37.405	131	79	2	93	221	61	190	2.20e-18	84.7
Msa0993270	AT5G28530.1	37.405	131	79	2	93	221	61	190	2.29e-18	84.3
Msa0993270	AT5G28530.4	37.692	130	78	2	93	220	61	189	2.52e-18	84.3
Msa0993270	AT5G28530.5	37.692	130	78	2	93	220	61	189	2.54e-18	84.3
Msa0993270	AT1G10240.2	33.094	139	86	4	93	226	54	190	2.16e-14	72.8
Msa0993270	AT1G10240.1	33.094	139	86	4	93	226	54	190	2.16e-14	72.8
Msa0993270	AT4G38180.1	31.875	160	103	4	87	241	70	228	4.52e-13	68.9

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Find 61 sgRNAs with CRISPR-Local

Find 567 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACAATAAAACAGGT+AGG	0.641669	6_4:-65774210	None:intergenic
AAACTCACAAGTATCTTTGC+CGG	0.460720	6_4:+65774028	Msa0993270:CDS
AACAAACGATCACCACCCTC+TGG	0.509162	6_4:-65773794	None:intergenic
AAGGATTTAGAGAGGATAGG+GGG	0.589938	6_4:+65774324	Msa0993270:CDS
AAGTCCCACCCAACATATCA+TGG	0.526054	6_4:-65774475	None:intergenic
ACCAACCTTGTGAAAACCAC+CGG	0.551580	6_4:-65774615	None:intergenic
ACCACCGGATGCATTGGCCA+TGG	0.631660	6_4:-65774600	None:intergenic
ACCATGGCCAATGCATCCGG+TGG	0.644970	6_4:+65774599	Msa0993270:CDS
ACGTAAGGCTCAAATGATTA+GGG	0.435617	6_4:+65774256	Msa0993270:CDS
AGCCTTACGTACAGAGAACC+CGG	0.602665	6_4:-65774243	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCGTTAAACACAATTGCT+TGG	-	chr6_4:65774109-65774128	None:intergenic	30.0%
GCAATTGTGTTTAACGATAT+AGG	+	chr6_4:65774110-65774129	Msa0993270:CDS	30.0%
AAACCAACAATAAAACAGGT+AGG	-	chr6_4:65774213-65774232	None:intergenic	30.0%
TAGCAAACCAACAATAAAAC+AGG	-	chr6_4:65774217-65774236	None:intergenic	30.0%
TGATCATAACCATGATATGT+TGG	+	chr6_4:65774466-65774485	Msa0993270:CDS	30.0%
GATCATAACCATGATATGTT+GGG	+	chr6_4:65774467-65774486	Msa0993270:CDS	30.0%
ATAAGACCATACCAAATGTA+CGG	+	chr6_4:65774575-65774594	Msa0993270:CDS	30.0%
AAGGATTTGTATAACCAAGT+TGG	+	chr6_4:65774647-65774666	Msa0993270:intron	30.0%
TTGGTTTAGAAGAAAACAAC+TGG	+	chr6_4:65775239-65775258	Msa0993270:intron	30.0%
TCTGATTTCCAATCTAACTA+TGG	+	chr6_4:65775463-65775482	Msa0993270:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	65773782	65780255	65773782	ID=Msa0993270;Name=Msa0993270
chr6_4	mRNA	65773782	65780255	65773782	ID=Msa0993270-mRNA-1;Parent=Msa0993270;Name=Msa0993270-mRNA-1;_AED=0.45;_eAED=0.49;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|250
chr6_4	exon	65773782	65773833	65773782	ID=Msa0993270-mRNA-1:exon:12252;Parent=Msa0993270-mRNA-1
chr6_4	exon	65773967	65774631	65773967	ID=Msa0993270-mRNA-1:exon:12253;Parent=Msa0993270-mRNA-1
chr6_4	exon	65780220	65780255	65780220	ID=Msa0993270-mRNA-1:exon:12254;Parent=Msa0993270-mRNA-1
chr6_4	CDS	65773782	65773833	65773782	ID=Msa0993270-mRNA-1:cds;Parent=Msa0993270-mRNA-1
chr6_4	CDS	65773967	65774631	65773967	ID=Msa0993270-mRNA-1:cds;Parent=Msa0993270-mRNA-1
chr6_4	CDS	65780220	65780255	65780220	ID=Msa0993270-mRNA-1:cds;Parent=Msa0993270-mRNA-1

Gene Sequence

>Msa0993270

ATGGATTGTAGACCAGAGGGTGGTGATCGTTTGTTTTTGGATGCAGGACTGGAAAGTGATGGTAGCAACACGTCAAGCGGTGGTTGTAGTACTACAGTCGAAACTGAAAACTCAAACTCACAAGTATCTTTGCCGGTCGAATCTGAAGAAGAGGCAAATTCTGTTGAAGATGGATTAGATGGTTCAGGTGGCCAAGCAATTGTGTTTAACGATATAGGTGATATAATGAAGTTTGACATGGAAAAGTTTTGCATTGATGATGTTGGAAGGTATGATTTTGCTAGTTTGGATGTTGCCTACCTGTTTTATTGTTGGTTTGCTAGAATGTCCGGGTTCTCTGTACGTAAGGCTCAAATGATTAGGGATCGGGAAGGTGTTGTTTTGCAGCAAACGTTTTTATGTTCATGTGAAGGATTTAGAGAGGATAGGGGGTTAACAAGGGAGAACCGAAAGCGTGAGCCACGCAACGAAACAAGATGTGGATGTAAGGCAAAATTTAGAGTTCATGTAGACATTGTTACAAAGCGTTGGTATGTCACTGTGTTTGAAATTGATCATAACCATGATATGTTGGGTGGGACTTTGTGTGGATTACTACCTGCATACAAAAAGATGAGTGAAGGTGATATTGAGGAAATTGAACGCAGTAGAAAAGCAGGGATAAGACCATACCAAATGTACGGTACCATGGCCAATGCATCCGGTGGTTTTCACAAGTTTGGAAGAGGAAGTACGAGGGAGCTATGTCCATAG

Protein sequence

>Msa0993270

MDCRPEGGDRLFLDAGLESDGSNTSSGGCSTTVETENSNSQVSLPVESEEEANSVEDGLDGSGGQAIVFNDIGDIMKFDMEKFCIDDVGRYDFASLDVAYLFYCWFARMSGFSVRKAQMIRDREGVVLQQTFLCSCEGFREDRGLTRENRKREPRNETRCGCKAKFRVHVDIVTKRWYVTVFEIDHNHDMLGGTLCGLLPAYKKMSEGDIEEIERSRKAGIRPYQMYGTMANASGGFHKFGRGSTRELCP*