AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0995730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0995730 MtrunA17_Chr6g0479551 88.168 262 25 1 1 262 1 256 2.55e-169 473
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0995730 AT1G18335.1 50.566 265 119 4 3 263 6 262 6.55e-77 239
Msa0995730 AT1G18335.3 50.758 264 118 4 3 262 6 261 3.59e-76 237
Msa0995730 AT1G18335.2 50.758 264 118 4 3 262 6 261 3.59e-76 237

Find 116 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTACATCTCGTTATTT+TGG 0.133488 6_4:+72484972 Msa0995730:three_prime_UTR
AATTTCGAAGCGGCGATAAA+TGG 0.261458 6_4:-72479153 None:intergenic
CTCTCATAGGACACGGCTTC+TGG 0.284691 6_4:+72483723 Msa0995730:intron
CTCTCATAGGACACGGCTTC+TGG 0.284691 6_4:+72484261 Msa0995730:intron
CTCTGAATATATTGCGTAAC+AGG 0.291924 6_4:-72480344 None:intergenic
TTAGCTTAAGAGCTCTATTC+AGG 0.293764 6_4:-72484629 None:intergenic
CTCTCGTAGGACATGGCTTC+TGG 0.304045 6_4:+72484085 Msa0995730:intron
CAGCCTCATGCTCAGTTGAT+TGG 0.328993 6_4:-72483773 None:intergenic
TCATGCTCAGTTGATTGGTT+GGG 0.334696 6_4:-72483768 None:intergenic
ACCATTGGATCAACTTTAGA+AGG 0.362053 6_4:-72482519 None:intergenic
CTCGTCCTCGGTTGGTTGGA+TGG 0.363059 6_4:-72484131 None:intergenic
AGCGTCTCCGAGTTCATTGC+TGG 0.379618 6_4:-72478905 None:intergenic
TGTACATTACCGCTTTGTTT+TGG 0.388601 6_4:+72481307 Msa0995730:CDS
TCGTCGTCAGTTGGTTCGTC+GGG 0.389680 6_4:-72484306 None:intergenic
ATATATTCAGAGGCTTCTTA+AGG 0.404094 6_4:+72480355 Msa0995730:CDS
CTCATGCTCAGTTGATTGGT+TGG 0.408139 6_4:-72483769 None:intergenic
TATCGCCGCTTCGAAATTAA+CGG 0.410757 6_4:+72479158 Msa0995730:CDS
CTCGGTTGGTTGGATGGGTT+CGG 0.413998 6_4:-72484125 None:intergenic
CTCTCATAGGACATGACTTC+GGG 0.417664 6_4:+72483905 Msa0995730:intron
CTCGTCCTCAGTTGGTTGGA+TGG 0.420386 6_4:-72483951 None:intergenic
TTAGCCAATAGGATGTATTT+CGG 0.421672 6_4:+72484602 Msa0995730:CDS
TCGTCCTCAGTTGGTTGGAT+GGG 0.424743 6_4:-72483950 None:intergenic
CGTGTCCAGGGGAAAGGATT+GGG 0.426522 6_4:+72481377 Msa0995730:CDS
CAAAGCCGCATATAGCATAA+AGG 0.444226 6_4:+72479112 Msa0995730:CDS
ACAGCTCGAGCCTCGTGTCC+AGG 0.444598 6_4:+72481364 Msa0995730:CDS
TCGTCCTCGGTTGGTTGGAT+GGG 0.450341 6_4:-72484130 None:intergenic
TATAATATGTTTGATATCGC+AGG 0.453052 6_4:+72485034 Msa0995730:three_prime_UTR
ACAAATATATAGCGTGCTTC+AGG 0.453405 6_4:-72481182 None:intergenic
AGCTCGAACTTGCAGGAGTT+AGG 0.457690 6_4:-72485066 None:intergenic
CAGCCTCGTCCTCGGTTGGT+TGG 0.458465 6_4:-72484135 None:intergenic
AATTCCGAAATACATCCTAT+TGG 0.458467 6_4:-72484606 None:intergenic
TCTTCTTGACGACTAGTTGA+AGG 0.460099 6_4:-72481263 None:intergenic
AAAGGTGAAGCGTAGAGAAA+TGG 0.460189 6_4:+72481154 Msa0995730:CDS
CTCAGTTGATTGGTTGGGGT+CGG 0.462972 6_4:-72483763 None:intergenic
GTTGATTGGTTGGGGTCGGC+AGG 0.463023 6_4:-72483759 None:intergenic
CAGCCTCGTCCTCAGTTGGT+TGG 0.465098 6_4:-72483955 None:intergenic
GTTGGTTGGATGGGGTCGGC+AGG 0.465781 6_4:-72483941 None:intergenic
CTTAACATGGAAGGGCCATA+TGG 0.467460 6_4:+72481110 Msa0995730:CDS
GCTTTCCCAATCCTTTCCCC+TGG 0.468580 6_4:-72481382 None:intergenic
CAGGATAGTGAATGAGTTGG+AGG 0.471220 6_4:+72484874 Msa0995730:intron
AGGATTGGGAAAGCTTCTAA+TGG 0.474839 6_4:+72481391 Msa0995730:CDS
GTTGGTTCGTCGGGGTCACC+TGG 0.481274 6_4:-72484297 None:intergenic
CTCGTCGTCAGTTGGTTCGT+CGG 0.482006 6_4:-72484307 None:intergenic
GGCGTTGTTGTGAGTTGCAT+TGG 0.483691 6_4:-72478945 None:intergenic
CTCAGTTGGTTGGATGGGGT+CGG 0.486235 6_4:-72483945 None:intergenic
CAGCTCGAGCCTCGTGTCCA+GGG 0.491833 6_4:+72481365 Msa0995730:CDS
GAAGATAGTGGTCCCTTGGT+TGG 0.492453 6_4:+72481281 Msa0995730:CDS
TCCAAAATAACGAGATGTAA+AGG 0.493796 6_4:-72484973 None:intergenic
CATGCTCAGTTGATTGGTTG+GGG 0.499435 6_4:-72483767 None:intergenic
TATTGAGCTTATCGCCCAAA+AGG 0.500241 6_4:+72481418 Msa0995730:CDS
GTTGGTTGGATGGGTTCGGC+AGG 0.501696 6_4:-72484121 None:intergenic
CAATGCTAACCTTTCGGCAT+CGG 0.501747 6_4:-72484460 None:intergenic
ACATGAGGAAGTTAGCCAAT+AGG 0.503838 6_4:+72484591 Msa0995730:CDS
CGTCCTCAGTTGGTTGGATG+GGG 0.507573 6_4:-72483949 None:intergenic
AGGAATTTCAGCCTCGTCCT+CGG 0.509764 6_4:-72484143 None:intergenic
TCTTGCCACTCAGATCCATA+TGG 0.513626 6_4:-72481125 None:intergenic
CTCTCCGTGTGTTTAAAGTC+AGG 0.520731 6_4:+72480299 Msa0995730:CDS
CTGTCATGCTAACTGTTCAA+AGG 0.521016 6_4:+72481701 Msa0995730:CDS
TCGTGTCCAGGGGAAAGGAT+TGG 0.525244 6_4:+72481376 Msa0995730:CDS
TGAGTGGCAAGAGGAAGAAA+AGG 0.525897 6_4:+72481136 Msa0995730:CDS
ATCTACAGCTTAACATGGAA+GGG 0.529467 6_4:+72481102 Msa0995730:intron
ATTTCAGCCTCGTCCTCGGT+TGG 0.531048 6_4:-72484139 None:intergenic
GAGCCTCGTGTCCAGGGGAA+AGG 0.535185 6_4:+72481371 Msa0995730:CDS
AATCTACAGCTTAACATGGA+AGG 0.544882 6_4:+72481101 Msa0995730:intron
ATTTCAGCCTCGTCGTCAGT+TGG 0.553072 6_4:-72484315 None:intergenic
CCGAGTTCATTGCTGGTGAG+TGG 0.555140 6_4:-72478898 None:intergenic
ACCTTCTAAAGTTGATCCAA+TGG 0.555355 6_4:+72482518 Msa0995730:CDS
TCAAGAAGATAGTGGTCCCT+TGG 0.557490 6_4:+72481277 Msa0995730:CDS
CATCCAACCAACCGAGGACG+AGG 0.558069 6_4:+72484132 Msa0995730:CDS
ACGTTGATGCCGATGCCGAA+AGG 0.559474 6_4:+72484451 Msa0995730:CDS
ATTTCAGCCTCGTCCTCAGT+TGG 0.560819 6_4:-72483959 None:intergenic
CCTCTCATAGGACATGACTT+CGG 0.565717 6_4:+72483904 Msa0995730:intron
GCTAATGATGTCGTTGCTGA+AGG 0.566188 6_4:+72484647 Msa0995730:three_prime_UTR
TGTGAGTTGCATTGGTTCCA+CGG 0.567819 6_4:-72478937 None:intergenic
GGATTTATCTCAAATTCCCA+AGG 0.569573 6_4:+72484993 Msa0995730:three_prime_UTR
CATCCAACCAACTGAGGACG+AGG 0.575763 6_4:+72483952 Msa0995730:CDS
TTGCAGGATAGTGAATGAGT+TGG 0.581840 6_4:+72484871 Msa0995730:intron
TGTCATGCTAACTGTTCAAA+GGG 0.583387 6_4:+72481702 Msa0995730:CDS
AGTTCATACACATAAAGTAC+TGG 0.583472 6_4:-72481341 None:intergenic
TAACCTTCTCTCTGTTACGA+CGG 0.587012 6_4:-72478966 None:intergenic
CCACTCACCAGCAATGAACT+CGG 0.587556 6_4:+72478898 None:intergenic
CTGTTACGCAATATATTCAG+AGG 0.588076 6_4:+72480345 Msa0995730:CDS
ACTAGTCGTCAAGAAGATAG+TGG 0.589965 6_4:+72481269 Msa0995730:CDS
AAAGGAAAAGTGCAAGACAC+AGG 0.590134 6_4:-72484955 None:intergenic
ATAATATGTTTGATATCGCA+GGG 0.594870 6_4:+72485035 Msa0995730:three_prime_UTR
CAACCAATCAACTGAGCATG+AGG 0.596952 6_4:+72483770 Msa0995730:CDS
AATCCTTTCCCCTGGACACG+AGG 0.597062 6_4:-72481374 None:intergenic
CATTGGTTCCACGGTCACGT+TGG 0.600954 6_4:-72478928 None:intergenic
TCCTTTGTCACATTACTGAG+TGG 0.604079 6_4:+72484931 Msa0995730:three_prime_UTR
GTGATCCTTTATGCTATATG+CGG 0.614292 6_4:-72479117 None:intergenic
CGACCCCATCCAACCAACTG+AGG 0.623573 6_4:+72483946 Msa0995730:CDS
AGCTCGAGCCTCGTGTCCAG+GGG 0.623716 6_4:+72481366 Msa0995730:CDS
AATATATTGCGTAACAGGAG+AGG 0.626761 6_4:-72480339 None:intergenic
GCCACTCAGTAATGTGACAA+AGG 0.628264 6_4:-72484932 None:intergenic
GGATTGAAACAACGGACATG+AGG 0.632408 6_4:+72484576 Msa0995730:intron
AAGGAAAAGTGCAAGACACA+GGG 0.635168 6_4:-72484954 None:intergenic
ATATATCAGGATTGAAACAA+CGG 0.638072 6_4:+72484568 Msa0995730:intron
GAGACGCTCCAACGTGACCG+TGG 0.649093 6_4:+72478920 Msa0995730:CDS
ATTGCGTAACAGGAGAGGAA+AGG 0.649302 6_4:-72480334 None:intergenic
ATATGGATCTGAGTGGCAAG+AGG 0.653218 6_4:+72481127 Msa0995730:CDS
TCTAAATCTACAGCTTAACA+TGG 0.653637 6_4:+72481097 Msa0995730:intron
CGAACCCATCCAACCAACCG+AGG 0.655141 6_4:+72484126 Msa0995730:CDS
CGACGAACCAACTGACGACG+AGG 0.657612 6_4:+72484308 Msa0995730:CDS
GTGTGTTTAAAGTCAGGACA+TGG 0.661363 6_4:+72480305 Msa0995730:CDS
ACGCTATATATTTGTGCACG+AGG 0.663923 6_4:+72481190 Msa0995730:CDS
ACGCCGTCGTAACAGAGAGA+AGG 0.663934 6_4:+72478963 Msa0995730:CDS
AGTTACCGTTAATTTCGAAG+CGG 0.666945 6_4:-72479163 None:intergenic
TAATGTACAAATCCAACCAA+GGG 0.669573 6_4:-72481293 None:intergenic
GTAATGTACAAATCCAACCA+AGG 0.669580 6_4:-72481294 None:intergenic
ATGTCCTGACTTTAAACACA+CGG 0.673198 6_4:-72480303 None:intergenic
CGTCGTCAGTTGGTTCGTCG+GGG 0.674091 6_4:-72484305 None:intergenic
ATCAACTTTAGAAGGTGACG+TGG 0.674095 6_4:-72482511 None:intergenic
GATGACAACAGTGTTGACTG+AGG 0.683653 6_4:+72481235 Msa0995730:CDS
GATAAATGGTAAAAGAAGCG+AGG 0.704509 6_4:-72479139 None:intergenic
CCTCTTCTTCCAAAACAAAG+CGG 0.723548 6_4:-72481316 None:intergenic
AAGGGCCATATGGATCTGAG+TGG 0.737924 6_4:+72481120 Msa0995730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATACAATTAAATTAATA+AGG - chr6_4:72481890-72481909 None:intergenic 10.0%
!! TTCAATTTATAAATTTGTAA+TGG + chr6_4:72482131-72482150 Msa0995730:intron 10.0%
!! ATTCTCAAAATAAAAATTTA+AGG + chr6_4:72482236-72482255 Msa0995730:intron 10.0%
!! ATAAAAAAAACAATAAAGAA+AGG + chr6_4:72483479-72483498 Msa0995730:intron 10.0%
!!! CTTTTTTTTTTAAATTTTGA+AGG + chr6_4:72483834-72483853 Msa0995730:intron 10.0%
!!! TTCTTTTTTTAAAATTTTGA+AGG + chr6_4:72484014-72484033 Msa0995730:intron 10.0%
!!! TTTCTTTTTTAAAATTTTGA+AGG + chr6_4:72484367-72484386 Msa0995730:intron 10.0%
!!! TAGTTTATTTTTATTTTAGT+CGG + chr6_4:72484422-72484441 Msa0995730:intron 10.0%
!!! GTAAAATTAACATTTAACTT+AGG + chr6_4:72479624-72479643 Msa0995730:intron 15.0%
!!! AAATTTGTTTATTGAATTAG+CGG - chr6_4:72480005-72480024 None:intergenic 15.0%
!! TGATAGTATAAACAAATAAA+AGG - chr6_4:72480982-72481001 None:intergenic 15.0%
!!! CAATTTATTGATTTTTTTAC+AGG + chr6_4:72481607-72481626 Msa0995730:intron 15.0%
!! ATAGAATATAGATATATATG+CGG - chr6_4:72482016-72482035 None:intergenic 15.0%
!! TTCATAATTCTCATAATATT+TGG + chr6_4:72482346-72482365 Msa0995730:intron 15.0%
!! ATTATAGATAATCAATCTAA+TGG - chr6_4:72482698-72482717 None:intergenic 15.0%
!!! CAAATTTTTATTTAGATTCA+TGG + chr6_4:72483360-72483379 Msa0995730:intron 15.0%
!! AAGGAAATTAAGATATTTAA+TGG + chr6_4:72483498-72483517 Msa0995730:intron 15.0%
!!! TTTTTCAATTGAGATAATGA+AGG + chr6_4:72479744-72479763 Msa0995730:intron 20.0%
!! CTTACTACATTATTAATTAC+AGG + chr6_4:72480128-72480147 Msa0995730:intron 20.0%
!! ATAGTAACCTATAGTTTATA+AGG + chr6_4:72480162-72480181 Msa0995730:intron 20.0%
!!! ATTATAGCCTTATAAACTAT+AGG - chr6_4:72480172-72480191 None:intergenic 20.0%
!! TTAATATTTCAACATAGCTA+TGG + chr6_4:72480197-72480216 Msa0995730:intron 20.0%
!! GTAAACACTTGTAATTTAAT+GGG + chr6_4:72480620-72480639 Msa0995730:intron 20.0%
!! TAGTATAAACAAATAAAAGG+TGG - chr6_4:72480979-72480998 None:intergenic 20.0%
!! TATCAAAGATCATATTAGAT+GGG - chr6_4:72481647-72481666 None:intergenic 20.0%
!! ATATCAAAGATCATATTAGA+TGG - chr6_4:72481648-72481667 None:intergenic 20.0%
!!! ATTTTTACACTAGTAAACTA+AGG + chr6_4:72481743-72481762 Msa0995730:CDS 20.0%
!! AGAGATAAAAAATTCAATGA+TGG - chr6_4:72481790-72481809 None:intergenic 20.0%
!! GTGTAATAGACTTATATATA+AGG + chr6_4:72482036-72482055 Msa0995730:intron 20.0%
!! TTGAAGTAAGAACAATATTA+TGG + chr6_4:72482191-72482210 Msa0995730:intron 20.0%
!! AGTTTATGAAAGTAGAAAAT+AGG - chr6_4:72482311-72482330 None:intergenic 20.0%
!! GAATTATGAAAGTAGAAAAT+AGG - chr6_4:72482336-72482355 None:intergenic 20.0%
!! GAAAAATCTAGAAAGTTATT+AGG - chr6_4:72482403-72482422 None:intergenic 20.0%
!!! AAATGCCTTTTTTATTAGTT+CGG + chr6_4:72482935-72482954 Msa0995730:intron 20.0%
!!! ATTTTTCTTCTACTTTTTTG+TGG + chr6_4:72483232-72483251 Msa0995730:intron 20.0%
!!! TTTTTCTTCTACTTTTTTGT+GGG + chr6_4:72483233-72483252 Msa0995730:intron 20.0%
!! TAAAAAAGAAAAGAAAAGTC+TGG + chr6_4:72483444-72483463 Msa0995730:intron 20.0%
!! AAAAAAGAAAAGAAAAGTCT+GGG + chr6_4:72483445-72483464 Msa0995730:intron 20.0%
!! ATAAAATCAAATATACTCAC+AGG - chr6_4:72483804-72483823 None:intergenic 20.0%
!!! GTTTCTTTTTAAAGTTTTGA+AGG + chr6_4:72484192-72484211 Msa0995730:intron 20.0%
!!! TTTTTGTAGTACTTTTTATC+AGG + chr6_4:72484484-72484503 Msa0995730:intron 20.0%
!!! TTTTGTAGTACTTTTTATCA+GGG + chr6_4:72484485-72484504 Msa0995730:intron 20.0%
!! AGATAAAGAATTAGAAACAA+AGG - chr6_4:72484540-72484559 None:intergenic 20.0%
!!! AACTTTTTGGTCATTTTTTA+TGG + chr6_4:72484907-72484926 Msa0995730:three_prime_UTR 20.0%
!! AAACAAAAAATTGTTTCCTT+GGG - chr6_4:72485012-72485031 None:intergenic 20.0%
!! AAAACAAAAAATTGTTTCCT+TGG - chr6_4:72485013-72485032 None:intergenic 20.0%
!!! ATACTATTTTGAAGAACTTG+TGG - chr6_4:72479464-72479483 None:intergenic 25.0%
!! GCTTATTTGAGTTTATCTAT+TGG - chr6_4:72479501-72479520 None:intergenic 25.0%
!! TTAACTGAATTTGAAGTGTT+TGG + chr6_4:72479602-72479621 Msa0995730:intron 25.0%
! ATAATGAAGGTAAAAATGAG+AGG + chr6_4:72479757-72479776 Msa0995730:intron 25.0%
! TTATAAAGTATGAGCTCAAA+TGG + chr6_4:72479786-72479805 Msa0995730:intron 25.0%
! TTTGTATAACTCTTTGGTAA+TGG - chr6_4:72479882-72479901 None:intergenic 25.0%
! TGTAAGTTTGTATAACTCTT+TGG - chr6_4:72479888-72479907 None:intergenic 25.0%
! TAATGTAGTAAGTAGAAGTT+GGG - chr6_4:72480120-72480139 None:intergenic 25.0%
! ATAATGTAGTAAGTAGAAGT+TGG - chr6_4:72480121-72480140 None:intergenic 25.0%
! CTGGAAATAATGTAAAACTT+AGG - chr6_4:72480277-72480296 None:intergenic 25.0%
!! CTAAGTTTTACATTATTTCC+AGG + chr6_4:72480275-72480294 Msa0995730:intron 25.0%
!! ACAGTTATATTTGTTGAGTA+TGG + chr6_4:72480433-72480452 Msa0995730:intron 25.0%
! GGTAAACACTTGTAATTTAA+TGG + chr6_4:72480619-72480638 Msa0995730:intron 25.0%
!! TTACAATGAAGGTGAATTTT+TGG - chr6_4:72480885-72480904 None:intergenic 25.0%
!!! TGAATTTTGTTTTTATCACG+AGG + chr6_4:72480942-72480961 Msa0995730:intron 25.0%
!!! GAATTTTGTTTTTATCACGA+GGG + chr6_4:72480943-72480962 Msa0995730:intron 25.0%
!! TGTTAGCTTATTCATTGAAA+TGG + chr6_4:72481048-72481067 Msa0995730:intron 25.0%
!! GTTAGCTTATTCATTGAAAT+GGG + chr6_4:72481049-72481068 Msa0995730:intron 25.0%
!! AAAACAATTAAGCACCTTTT+GGG - chr6_4:72481435-72481454 None:intergenic 25.0%
!! AAAAACAATTAAGCACCTTT+TGG - chr6_4:72481436-72481455 None:intergenic 25.0%
! AGAGAATTATTATGTTGCAA+AGG + chr6_4:72481485-72481504 Msa0995730:intron 25.0%
!!! ATATTTTCTGGAATGCATTA+AGG - chr6_4:72481915-72481934 None:intergenic 25.0%
!! AAAAGCAGAGAAATATTTTC+TGG - chr6_4:72481927-72481946 None:intergenic 25.0%
!! TTTGTAATGGTAATGTTAGT+TGG + chr6_4:72482144-72482163 Msa0995730:intron 25.0%
! AAAAATTTAAGGATCTTTGC+AGG + chr6_4:72482247-72482266 Msa0995730:intron 25.0%
! AGTTTATGCAAGTAGAAAAT+AGG - chr6_4:72482286-72482305 None:intergenic 25.0%
! ACGAAGACTAAACATAAAAA+GGG - chr6_4:72482446-72482465 None:intergenic 25.0%
! AACGAAGACTAAACATAAAA+AGG - chr6_4:72482447-72482466 None:intergenic 25.0%
!! ATAACACTTACAATTTTGCA+GGG - chr6_4:72482553-72482572 None:intergenic 25.0%
!!! TGAAGCTAAAACTATTTTTG+AGG + chr6_4:72482656-72482675 Msa0995730:CDS 25.0%
!! ACAAAAAATATTAGCCTAGA+TGG - chr6_4:72482792-72482811 None:intergenic 25.0%
!!! AATGCCTTTTTTATTAGTTC+GGG + chr6_4:72482936-72482955 Msa0995730:intron 25.0%
! TTAATACATCCAAGATATCA+TGG - chr6_4:72482990-72483009 None:intergenic 25.0%
!!! CCTTAAGTATTGATAAAGAA+GGG - chr6_4:72483085-72483104 None:intergenic 25.0%
!!! TCCTTAAGTATTGATAAAGA+AGG - chr6_4:72483086-72483105 None:intergenic 25.0%
!! CTCTACTATCTTTCTTTTAT+TGG + chr6_4:72483121-72483140 Msa0995730:intron 25.0%
! AAAAAGAAAAGAAAAGTCTG+GGG + chr6_4:72483446-72483465 Msa0995730:intron 25.0%
! TTCCTATCAAAATTTATACC+TGG + chr6_4:72483619-72483638 Msa0995730:intron 25.0%
! ATAAAATCAACTATACTCAC+AGG - chr6_4:72484166-72484185 None:intergenic 25.0%
! ATAAAATCAACTATACTCAC+AGG - chr6_4:72484166-72484185 None:intergenic 25.0%
! AAAAATCAATGCTAACCTTT+CGG - chr6_4:72484469-72484488 None:intergenic 25.0%
!!! TATCTGTTGATTCATATATC+AGG + chr6_4:72484555-72484574 Msa0995730:intron 25.0%
! ATATATCAGGATTGAAACAA+CGG + chr6_4:72484568-72484587 Msa0995730:intron 25.0%
!!! AAAACATGAGAGGTTTTATT+GGG - chr6_4:72484849-72484868 None:intergenic 25.0%
! TATAATATGTTTGATATCGC+AGG + chr6_4:72485034-72485053 Msa0995730:three_prime_UTR 25.0%
! ATAATATGTTTGATATCGCA+GGG + chr6_4:72485035-72485054 Msa0995730:three_prime_UTR 25.0%
TATAGCATAAACACTGATCA+TGG + chr6_4:72479293-72479312 Msa0995730:intron 30.0%
! TGTTTTCATAAGCTATCATG+AGG + chr6_4:72479387-72479406 Msa0995730:intron 30.0%
CCAAATAGTAACAAAGTCTT+AGG - chr6_4:72479538-72479557 None:intergenic 30.0%
CCTAAGACTTTGTTACTATT+TGG + chr6_4:72479535-72479554 Msa0995730:intron 30.0%
!! AATTAGACACTCGTCATTTT+AGG - chr6_4:72479961-72479980 None:intergenic 30.0%
ATATATTCAGAGGCTTCTTA+AGG + chr6_4:72480355-72480374 Msa0995730:CDS 30.0%
TTGAGTATGGCTCAAATTAA+CGG + chr6_4:72480446-72480465 Msa0995730:intron 30.0%
AACACTTGTAATTTAATGGG+TGG + chr6_4:72480623-72480642 Msa0995730:intron 30.0%
! GTTTTCCAATAATGTAATGC+TGG - chr6_4:72480680-72480699 None:intergenic 30.0%
TTTATCTGTTTGTGTAGAGT+TGG + chr6_4:72480774-72480793 Msa0995730:intron 30.0%
TTATCTGTTTGTGTAGAGTT+GGG + chr6_4:72480775-72480794 Msa0995730:intron 30.0%
ATAGGACAATCATGAACAAT+GGG - chr6_4:72480845-72480864 None:intergenic 30.0%
AATAGGACAATCATGAACAA+TGG - chr6_4:72480846-72480865 None:intergenic 30.0%
TTGTTCATGATTGTCCTATT+TGG + chr6_4:72480846-72480865 Msa0995730:intron 30.0%
TCTTCTTTCTCTTACAATGA+AGG - chr6_4:72480896-72480915 None:intergenic 30.0%
TACCAAGAACATAAAAAAGG+AGG - chr6_4:72481022-72481041 None:intergenic 30.0%
!!! TCCTTTTTTATGTTCTTGGT+AGG + chr6_4:72481021-72481040 Msa0995730:intron 30.0%
TTCAATGAATAAGCTAACAC+AGG - chr6_4:72481047-72481066 None:intergenic 30.0%
TCTAAATCTACAGCTTAACA+TGG + chr6_4:72481097-72481116 Msa0995730:intron 30.0%
TAATGTACAAATCCAACCAA+GGG - chr6_4:72481296-72481315 None:intergenic 30.0%
AGTTCATACACATAAAGTAC+TGG - chr6_4:72481344-72481363 None:intergenic 30.0%
! AAACTCATTCTGACTTTTGA+TGG + chr6_4:72481458-72481477 Msa0995730:intron 30.0%
!!! ACTTTTTTTGTAGAACTGCA+TGG + chr6_4:72481675-72481694 Msa0995730:intron 30.0%
!!! CTTTTTTTGTAGAACTGCAT+GGG + chr6_4:72481676-72481695 Msa0995730:intron 30.0%
CATGTCAAGTTTGATATGAA+TGG + chr6_4:72481821-72481840 Msa0995730:intron 30.0%
TCAAGTTTGATATGAATGGA+AGG + chr6_4:72481825-72481844 Msa0995730:intron 30.0%
CAAGTTTGATATGAATGGAA+GGG + chr6_4:72481826-72481845 Msa0995730:intron 30.0%
TCTTCTTGTAGACATATATG+TGG - chr6_4:72481967-72481986 None:intergenic 30.0%
!!! ATAATATTTGGTTTTAGCCC+AGG + chr6_4:72482358-72482377 Msa0995730:intron 30.0%
GATATCTTGATAGATAACCT+GGG - chr6_4:72482378-72482397 None:intergenic 30.0%
TGATATCTTGATAGATAACC+TGG - chr6_4:72482379-72482398 None:intergenic 30.0%
AGACTAAACATAAAAAGGGA+GGG - chr6_4:72482442-72482461 None:intergenic 30.0%
AAGACTAAACATAAAAAGGG+AGG - chr6_4:72482443-72482462 None:intergenic 30.0%
!! TTTAGTCTTCGTTTTGTTGA+CGG + chr6_4:72482454-72482473 Msa0995730:intron 30.0%
! TAACACTTACAATTTTGCAG+GGG - chr6_4:72482552-72482571 None:intergenic 30.0%
! CATAACACTTACAATTTTGC+AGG - chr6_4:72482554-72482573 None:intergenic 30.0%
! TCAAAGGGGAATATGTTTTA+TGG - chr6_4:72482755-72482774 None:intergenic 30.0%
ATCCAACAGTTATAGATCAA+TGG - chr6_4:72483044-72483063 None:intergenic 30.0%
CCCTTCTTTATCAATACTTA+AGG + chr6_4:72483082-72483101 Msa0995730:intron 30.0%
CACATTGGACAAGATATAAT+TGG - chr6_4:72483180-72483199 None:intergenic 30.0%
!! CACCAGGTATAAATTTTGAT+AGG - chr6_4:72483624-72483643 None:intergenic 30.0%
CTATCAAAATTTATACCTGG+TGG + chr6_4:72483622-72483641 Msa0995730:intron 30.0%
GCATGATCTATATCACAAAA+AGG - chr6_4:72483863-72483882 None:intergenic 30.0%
GCATGATCTATATCACAAAA+AGG - chr6_4:72483863-72483882 None:intergenic 30.0%
!!! TAAAGTTTTGAAGGAAACCT+TGG + chr6_4:72484201-72484220 Msa0995730:intron 30.0%
AATCATGATCTATATCACCA+AGG - chr6_4:72484221-72484240 None:intergenic 30.0%
!! AGTACTTTTTATCAGGGTAT+AGG + chr6_4:72484491-72484510 Msa0995730:intron 30.0%
TTAGCCAATAGGATGTATTT+CGG + chr6_4:72484602-72484621 Msa0995730:CDS 30.0%
AATTCCGAAATACATCCTAT+TGG - chr6_4:72484609-72484628 None:intergenic 30.0%
AATGTGATTAATGCTTGTGT+TGG - chr6_4:72484687-72484706 None:intergenic 30.0%
!! CAAAACATGAGAGGTTTTAT+TGG - chr6_4:72484850-72484869 None:intergenic 30.0%
! TCCTTTACATCTCGTTATTT+TGG + chr6_4:72484972-72484991 Msa0995730:three_prime_UTR 30.0%
TCCAAAATAACGAGATGTAA+AGG - chr6_4:72484976-72484995 None:intergenic 30.0%
ATTCAAAAAACTCGCGAATG+AGG - chr6_4:72479031-72479050 None:intergenic 35.0%
GTGATCCTTTATGCTATATG+CGG - chr6_4:72479120-72479139 None:intergenic 35.0%
GATAAATGGTAAAAGAAGCG+AGG - chr6_4:72479142-72479161 None:intergenic 35.0%
AGTTACCGTTAATTTCGAAG+CGG - chr6_4:72479166-72479185 None:intergenic 35.0%
TTACGTATTTAGCCTCTGTT+TGG + chr6_4:72479246-72479265 Msa0995730:intron 35.0%
TAAGCTGTTTATCCAAACAG+AGG - chr6_4:72479261-72479280 None:intergenic 35.0%
GATAAACAGCTTATTTCGCA+TGG + chr6_4:72479268-72479287 Msa0995730:intron 35.0%
AGGAGCTTATGAAAATAAGC+TGG + chr6_4:72479407-72479426 Msa0995730:intron 35.0%
TCAAATAAGCTAATCCAGAC+AGG + chr6_4:72479511-72479530 Msa0995730:intron 35.0%
TAACTGATAAGCTGACTGAT+AGG + chr6_4:72479572-72479591 Msa0995730:intron 35.0%
AACTGATAAGCTGACTGATA+GGG + chr6_4:72479573-72479592 Msa0995730:intron 35.0%
! ACCAAACTGCTATCTTTTGA+CGG - chr6_4:72479924-72479943 None:intergenic 35.0%
! TTGGGTGTAGCTTAATTTTG+GGG - chr6_4:72480102-72480121 None:intergenic 35.0%
! GTTGGGTGTAGCTTAATTTT+GGG - chr6_4:72480103-72480122 None:intergenic 35.0%
! AGTTGGGTGTAGCTTAATTT+TGG - chr6_4:72480104-72480123 None:intergenic 35.0%
GTAAAACTTAGGCACATTGA+AGG - chr6_4:72480266-72480285 None:intergenic 35.0%
ATGTCCTGACTTTAAACACA+CGG - chr6_4:72480306-72480325 None:intergenic 35.0%
AATATATTGCGTAACAGGAG+AGG - chr6_4:72480342-72480361 None:intergenic 35.0%
CTCTGAATATATTGCGTAAC+AGG - chr6_4:72480347-72480366 None:intergenic 35.0%
CTGTTACGCAATATATTCAG+AGG + chr6_4:72480345-72480364 Msa0995730:CDS 35.0%
! GCTCAAATTAACGGATAAGT+GGG + chr6_4:72480455-72480474 Msa0995730:intron 35.0%
!! TTTGAGCATCGATCATTCAT+AGG + chr6_4:72480540-72480559 Msa0995730:intron 35.0%
!! TTGAGCATCGATCATTCATA+GGG + chr6_4:72480541-72480560 Msa0995730:intron 35.0%
TCATAGGGTTATGACTATGA+CGG + chr6_4:72480556-72480575 Msa0995730:intron 35.0%
TTCCAATAATGTAATGCTGG+AGG - chr6_4:72480677-72480696 None:intergenic 35.0%
TAGGACAATCATGAACAATG+GGG - chr6_4:72480844-72480863 None:intergenic 35.0%
! GAAAAGAGCACAAACCAAAT+AGG - chr6_4:72480863-72480882 None:intergenic 35.0%
!!! GTCCTCCTTTTTTATGTTCT+TGG + chr6_4:72481017-72481036 Msa0995730:intron 35.0%
GCCTACCAAGAACATAAAAA+AGG - chr6_4:72481025-72481044 None:intergenic 35.0%
AGCTTATTCATTGAAATGGG+CGG + chr6_4:72481052-72481071 Msa0995730:intron 35.0%
AATCTACAGCTTAACATGGA+AGG + chr6_4:72481101-72481120 Msa0995730:intron 35.0%
ATCTACAGCTTAACATGGAA+GGG + chr6_4:72481102-72481121 Msa0995730:intron 35.0%
ACAAATATATAGCGTGCTTC+AGG - chr6_4:72481185-72481204 None:intergenic 35.0%
GTAATGTACAAATCCAACCA+AGG - chr6_4:72481297-72481316 None:intergenic 35.0%
!!! TGTACATTACCGCTTTGTTT+TGG + chr6_4:72481307-72481326 Msa0995730:CDS 35.0%
AAGGACACAACTTATAGTCT+AGG + chr6_4:72481504-72481523 Msa0995730:intron 35.0%
TGTCATGCTAACTGTTCAAA+GGG + chr6_4:72481702-72481721 Msa0995730:CDS 35.0%
GGCTTATACAAAAGCAGTTA+GGG - chr6_4:72481869-72481888 None:intergenic 35.0%
AGGCTTATACAAAAGCAGTT+AGG - chr6_4:72481870-72481889 None:intergenic 35.0%
!! ATATTTCTCTGCTTTTGAGC+AGG + chr6_4:72481931-72481950 Msa0995730:intron 35.0%
TGTAGACATATATGTGGTTC+AGG - chr6_4:72481961-72481980 None:intergenic 35.0%
GACTAAACATAAAAAGGGAG+GGG - chr6_4:72482441-72482460 None:intergenic 35.0%
!! ACCTTCTAAAGTTGATCCAA+TGG + chr6_4:72482518-72482537 Msa0995730:CDS 35.0%
ACCATTGGATCAACTTTAGA+AGG - chr6_4:72482522-72482541 None:intergenic 35.0%
! AACACTTACAATTTTGCAGG+GGG - chr6_4:72482551-72482570 None:intergenic 35.0%
CAGACCCGAACTAATAAAAA+AGG - chr6_4:72482943-72482962 None:intergenic 35.0%
CAACCAAAACCATGATATCT+TGG + chr6_4:72482978-72482997 Msa0995730:intron 35.0%
! CATCCAAGATATCATGGTTT+TGG - chr6_4:72482984-72483003 None:intergenic 35.0%
CTCCATTGATCTATAACTGT+TGG + chr6_4:72483039-72483058 Msa0995730:intron 35.0%
TAATCATCAGAGAGAAATCG+CGG - chr6_4:72483152-72483171 None:intergenic 35.0%
AACCATCATCATGTTCACAT+TGG - chr6_4:72483195-72483214 None:intergenic 35.0%
!!! TTCTACTTTTTTGTGGGATG+AGG + chr6_4:72483239-72483258 Msa0995730:intron 35.0%
TGTTACACACAACTGTTTGT+AGG + chr6_4:72483292-72483311 Msa0995730:intron 35.0%
TGATAGACTTAAATTGCGCA+TGG - chr6_4:72483549-72483568 None:intergenic 35.0%
GTCTATCATATCTACAGAGA+AGG + chr6_4:72483561-72483580 Msa0995730:intron 35.0%
! AAGGTGTTTCTTGTGTAGAT+AGG + chr6_4:72483580-72483599 Msa0995730:intron 35.0%
TGTTTCTTGTGTAGATAGGA+TGG + chr6_4:72483584-72483603 Msa0995730:intron 35.0%
! CAATTTTCACAACCTCTCAT+AGG + chr6_4:72483710-72483729 Msa0995730:intron 35.0%
! CAATTTTCACAACCTCTCAT+AGG + chr6_4:72483710-72483729 Msa0995730:intron 35.0%
! CAATTTTCACAACCTCTCAT+AGG + chr6_4:72483710-72483729 Msa0995730:intron 35.0%
TTTATCAGGGTATAGGATTG+AGG + chr6_4:72484498-72484517 Msa0995730:intron 35.0%
TTATCAGGGTATAGGATTGA+GGG + chr6_4:72484499-72484518 Msa0995730:intron 35.0%
TTAGCTTAAGAGCTCTATTC+AGG - chr6_4:72484632-72484651 None:intergenic 35.0%
! AGGAAGAATGCTCAACTTTT+TGG + chr6_4:72484894-72484913 Msa0995730:three_prime_UTR 35.0%
GGATTTATCTCAAATTCCCA+AGG + chr6_4:72484993-72485012 Msa0995730:three_prime_UTR 35.0%
TAACCTTCTCTCTGTTACGA+CGG - chr6_4:72478969-72478988 None:intergenic 40.0%
CTTTGCGAGAAGCTGAAAAA+CGG - chr6_4:72479069-72479088 None:intergenic 40.0%
CAAAGCCGCATATAGCATAA+AGG + chr6_4:72479112-72479131 Msa0995730:CDS 40.0%
AATTTCGAAGCGGCGATAAA+TGG - chr6_4:72479156-72479175 None:intergenic 40.0%
TATCGCCGCTTCGAAATTAA+CGG + chr6_4:72479158-72479177 Msa0995730:CDS 40.0%
ACTGATAAGCTGACTGATAG+GGG + chr6_4:72479574-72479593 Msa0995730:intron 40.0%
TCCGTCAAAAGATAGCAGTT+TGG + chr6_4:72479920-72479939 Msa0995730:intron 40.0%
! TGGGTGTAGCTTAATTTTGG+GGG - chr6_4:72480101-72480120 None:intergenic 40.0%
! GTGTGTTTAAAGTCAGGACA+TGG + chr6_4:72480305-72480324 Msa0995730:CDS 40.0%
! GGCTCAAATTAACGGATAAG+TGG + chr6_4:72480454-72480473 Msa0995730:intron 40.0%
AATACCCCTTGGTACAGTTT+AGG + chr6_4:72480596-72480615 Msa0995730:intron 40.0%
ATACCCCTTGGTACAGTTTA+GGG + chr6_4:72480597-72480616 Msa0995730:intron 40.0%
TTACCCCTAAACTGTACCAA+GGG - chr6_4:72480604-72480623 None:intergenic 40.0%
TTTACCCCTAAACTGTACCA+AGG - chr6_4:72480605-72480624 None:intergenic 40.0%
AGCCTCCAGCATTACATTAT+TGG + chr6_4:72480672-72480691 Msa0995730:intron 40.0%
! CGTTCTGTTGTCTGAGATTT+AGG + chr6_4:72480709-72480728 Msa0995730:intron 40.0%
! GTCTGAGATTTAGGCACAAT+TGG + chr6_4:72480718-72480737 Msa0995730:intron 40.0%
GCTTATTCATTGAAATGGGC+GGG + chr6_4:72481053-72481072 Msa0995730:intron 40.0%
AAAGGTGAAGCGTAGAGAAA+TGG + chr6_4:72481154-72481173 Msa0995730:CDS 40.0%
ACGCTATATATTTGTGCACG+AGG + chr6_4:72481190-72481209 Msa0995730:CDS 40.0%
! TCTTCTTGACGACTAGTTGA+AGG - chr6_4:72481266-72481285 None:intergenic 40.0%
ACTAGTCGTCAAGAAGATAG+TGG + chr6_4:72481269-72481288 Msa0995730:CDS 40.0%
CCTCTTCTTCCAAAACAAAG+CGG - chr6_4:72481319-72481338 None:intergenic 40.0%
AGGATTGGGAAAGCTTCTAA+TGG + chr6_4:72481391-72481410 Msa0995730:CDS 40.0%
TATTGAGCTTATCGCCCAAA+AGG + chr6_4:72481418-72481437 Msa0995730:CDS 40.0%
CTGTCATGCTAACTGTTCAA+AGG + chr6_4:72481701-72481720 Msa0995730:CDS 40.0%
CAAATAACCACGTGATGCTA+GGG - chr6_4:72482071-72482090 None:intergenic 40.0%
TAACAGTGATTGACATGTCG+AGG - chr6_4:72482101-72482120 None:intergenic 40.0%
! ATCAACTTTAGAAGGTGACG+TGG - chr6_4:72482514-72482533 None:intergenic 40.0%
! ACACTTACAATTTTGCAGGG+GGG - chr6_4:72482550-72482569 None:intergenic 40.0%
TTTCCGTTCTCATATGCAGA+TGG + chr6_4:72482596-72482615 Msa0995730:intron 40.0%
TCTCCATCTGCATATGAGAA+CGG - chr6_4:72482602-72482621 None:intergenic 40.0%
TCAACACAGATAGCTCAAAG+GGG - chr6_4:72482769-72482788 None:intergenic 40.0%
GTCAACACAGATAGCTCAAA+GGG - chr6_4:72482770-72482789 None:intergenic 40.0%
AAGAAGGGTCAACAAGAATG+CGG - chr6_4:72483070-72483089 None:intergenic 40.0%
GAAAGATAGTAGAGTTTGCG+AGG - chr6_4:72483115-72483134 None:intergenic 40.0%
GTCCAATGTGAACATGATGA+TGG + chr6_4:72483190-72483209 Msa0995730:intron 40.0%
CAGTTGTGTGTAACAATCAG+AGG - chr6_4:72483287-72483306 None:intergenic 40.0%
ATAGATATCACACCAGATCG+TGG + chr6_4:72483385-72483404 Msa0995730:intron 40.0%
TAGACTTAAATTGCGCATGG+AGG - chr6_4:72483546-72483565 None:intergenic 40.0%
! TCATGCTCAGTTGATTGGTT+GGG - chr6_4:72483771-72483790 None:intergenic 40.0%
! CAATTTTCACAACCTCTCGT+AGG + chr6_4:72484072-72484091 Msa0995730:intron 40.0%
ACATGAGGAAGTTAGCCAAT+AGG + chr6_4:72484591-72484610 Msa0995730:CDS 40.0%
AACCGATGAATGAGAGATAG+CGG - chr6_4:72484823-72484842 None:intergenic 40.0%
!!! ACCTCTCATGTTTTGTTTGC+AGG + chr6_4:72484855-72484874 Msa0995730:intron 40.0%
TCCTGCAAACAAAACATGAG+AGG - chr6_4:72484859-72484878 None:intergenic 40.0%
TTGCAGGATAGTGAATGAGT+TGG + chr6_4:72484871-72484890 Msa0995730:intron 40.0%
TCCTTTGTCACATTACTGAG+TGG + chr6_4:72484931-72484950 Msa0995730:three_prime_UTR 40.0%
! AAGGAAAAGTGCAAGACACA+GGG - chr6_4:72484957-72484976 None:intergenic 40.0%
! AAAGGAAAAGTGCAAGACAC+AGG - chr6_4:72484958-72484977 None:intergenic 40.0%
!! TGTGAGTTGCATTGGTTCCA+CGG - chr6_4:72478940-72478959 None:intergenic 45.0%
CGCGAATGAGGAAAGTTTAG+AGG - chr6_4:72479019-72479038 None:intergenic 45.0%
GAGAAGCTGAAAAACGGAAC+GGG - chr6_4:72479063-72479082 None:intergenic 45.0%
CGAGAAGCTGAAAAACGGAA+CGG - chr6_4:72479064-72479083 None:intergenic 45.0%
ACAAAGTCTTAGGTCCTGTC+TGG - chr6_4:72479528-72479547 None:intergenic 45.0%
CTGATAAGCTGACTGATAGG+GGG + chr6_4:72479575-72479594 Msa0995730:intron 45.0%
!! TCGTCATTTTAGGCTCTGGT+TGG - chr6_4:72479951-72479970 None:intergenic 45.0%
!! ACACTCGTCATTTTAGGCTC+TGG - chr6_4:72479955-72479974 None:intergenic 45.0%
TTTAAACACACGGAGAGACC+TGG - chr6_4:72480296-72480315 None:intergenic 45.0%
! CTCTCCGTGTGTTTAAAGTC+AGG + chr6_4:72480299-72480318 Msa0995730:CDS 45.0%
ATTGCGTAACAGGAGAGGAA+AGG - chr6_4:72480337-72480356 None:intergenic 45.0%
TACCCCTTGGTACAGTTTAG+GGG + chr6_4:72480598-72480617 Msa0995730:intron 45.0%
TACCCCTAAACTGTACCAAG+GGG - chr6_4:72480603-72480622 None:intergenic 45.0%
ACGCAGACAAGAACAGACAA+TGG - chr6_4:72480751-72480770 None:intergenic 45.0%
CTCGTGACTCATGACTATAC+AGG - chr6_4:72480804-72480823 None:intergenic 45.0%
CTTAACATGGAAGGGCCATA+TGG + chr6_4:72481110-72481129 Msa0995730:CDS 45.0%
TCTTGCCACTCAGATCCATA+TGG - chr6_4:72481128-72481147 None:intergenic 45.0%
ATATGGATCTGAGTGGCAAG+AGG + chr6_4:72481127-72481146 Msa0995730:CDS 45.0%
TGAGTGGCAAGAGGAAGAAA+AGG + chr6_4:72481136-72481155 Msa0995730:CDS 45.0%
!! GATGACAACAGTGTTGACTG+AGG + chr6_4:72481235-72481254 Msa0995730:CDS 45.0%
! TCAAGAAGATAGTGGTCCCT+TGG + chr6_4:72481277-72481296 Msa0995730:CDS 45.0%
!!! CCGCTTTGTTTTGGAAGAAG+AGG + chr6_4:72481316-72481335 Msa0995730:CDS 45.0%
ATGTTTACCCTAGCATCACG+TGG + chr6_4:72482061-72482080 Msa0995730:intron 45.0%
GCAAATAACCACGTGATGCT+AGG - chr6_4:72482072-72482091 None:intergenic 45.0%
CAATCTAATGGTGCAGTGAG+TGG - chr6_4:72482686-72482705 None:intergenic 45.0%
GGTCAACACAGATAGCTCAA+AGG - chr6_4:72482771-72482790 None:intergenic 45.0%
! GCTATCTGTGTTGACCATCT+AGG + chr6_4:72482775-72482794 Msa0995730:intron 45.0%
AAAACAGTTACGCCACGATC+TGG - chr6_4:72483400-72483419 None:intergenic 45.0%
AAAGAAAAGTCTGGGGACTC+AGG + chr6_4:72483453-72483472 Msa0995730:intron 45.0%
AGTCGAGATAGAATTCCACC+AGG - chr6_4:72483640-72483659 None:intergenic 45.0%
TCACAACCTCTCATAGGACA+CGG + chr6_4:72483716-72483735 Msa0995730:intron 45.0%
! CATGCTCAGTTGATTGGTTG+GGG - chr6_4:72483770-72483789 None:intergenic 45.0%
CTCATGCTCAGTTGATTGGT+TGG - chr6_4:72483772-72483791 None:intergenic 45.0%
CAACCAATCAACTGAGCATG+AGG + chr6_4:72483770-72483789 Msa0995730:CDS 45.0%
CCTCTCATAGGACATGACTT+CGG + chr6_4:72483904-72483923 Msa0995730:intron 45.0%
CTCTCATAGGACATGACTTC+GGG + chr6_4:72483905-72483924 Msa0995730:intron 45.0%
TCACAACCTCTCATAGGACA+CGG + chr6_4:72483716-72483735 Msa0995730:intron 45.0%
!!! TCTGGCGTTGATACTTTTCC+AGG + chr6_4:72483741-72483760 Msa0995730:CDS 45.0%
CAATGCTAACCTTTCGGCAT+CGG - chr6_4:72484463-72484482 None:intergenic 45.0%
GGATTGAAACAACGGACATG+AGG + chr6_4:72484576-72484595 Msa0995730:intron 45.0%
GCTAATGATGTCGTTGCTGA+AGG + chr6_4:72484647-72484666 Msa0995730:three_prime_UTR 45.0%
CACCGCTATCTCTCATTCAT+CGG + chr6_4:72484818-72484837 Msa0995730:intron 45.0%
! CAGGATAGTGAATGAGTTGG+AGG + chr6_4:72484874-72484893 Msa0995730:intron 45.0%
GCCACTCAGTAATGTGACAA+AGG - chr6_4:72484935-72484954 None:intergenic 45.0%
!!! CAGTTTTAGCTCGAACTTGC+AGG - chr6_4:72485076-72485095 None:intergenic 45.0%
GGCGTTGTTGTGAGTTGCAT+TGG - chr6_4:72478948-72478967 None:intergenic 50.0%
AGACGCTTGAGCATAGTGAG+TGG + chr6_4:72480479-72480498 Msa0995730:intron 50.0%
! GATCTGAAAGTGCAACGTCG+CGG + chr6_4:72480501-72480520 Msa0995730:intron 50.0%
GACTATGACGGTTGCAAGTG+TGG + chr6_4:72480568-72480587 Msa0995730:intron 50.0%
TTTATCACGAGGGCGAGCAT+TGG + chr6_4:72480953-72480972 Msa0995730:intron 50.0%
AAGGGCCATATGGATCTGAG+TGG + chr6_4:72481120-72481139 Msa0995730:CDS 50.0%
! GAAGATAGTGGTCCCTTGGT+TGG + chr6_4:72481281-72481300 Msa0995730:CDS 50.0%
! CTCAGTTGATTGGTTGGGGT+CGG - chr6_4:72483766-72483785 None:intergenic 50.0%
CAGCCTCATGCTCAGTTGAT+TGG - chr6_4:72483776-72483795 None:intergenic 50.0%
CCGAAGTCATGTCCTATGAG+AGG - chr6_4:72483907-72483926 None:intergenic 50.0%
TCGTCCTCAGTTGGTTGGAT+GGG - chr6_4:72483953-72483972 None:intergenic 50.0%
ATTTCAGCCTCGTCCTCAGT+TGG - chr6_4:72483962-72483981 None:intergenic 50.0%
TCACAACCTCTCGTAGGACA+TGG + chr6_4:72484078-72484097 Msa0995730:intron 50.0%
AGGAATTTCAGCCTCGTCCT+CGG - chr6_4:72484146-72484165 None:intergenic 50.0%
ATTTCAGCCTCGTCGTCAGT+TGG - chr6_4:72484318-72484337 None:intergenic 50.0%
AGCTCGAACTTGCAGGAGTT+AGG - chr6_4:72485069-72485088 None:intergenic 50.0%
AGCGTCTCCGAGTTCATTGC+TGG - chr6_4:72478908-72478927 None:intergenic 55.0%
!! CATTGGTTCCACGGTCACGT+TGG - chr6_4:72478931-72478950 None:intergenic 55.0%
ACGCCGTCGTAACAGAGAGA+AGG + chr6_4:72478963-72478982 Msa0995730:CDS 55.0%
GTGTGGCAGCAAATACCCCT+TGG + chr6_4:72480585-72480604 Msa0995730:intron 55.0%
AATCCTTTCCCCTGGACACG+AGG - chr6_4:72481377-72481396 None:intergenic 55.0%
TCGTGTCCAGGGGAAAGGAT+TGG + chr6_4:72481376-72481395 Msa0995730:CDS 55.0%
CGTGTCCAGGGGAAAGGATT+GGG + chr6_4:72481377-72481396 Msa0995730:CDS 55.0%
GCTTTCCCAATCCTTTCCCC+TGG - chr6_4:72481385-72481404 None:intergenic 55.0%
! TGCAGGGGGGTACATACCAT+TGG - chr6_4:72482537-72482556 None:intergenic 55.0%
CAGAAGCCGTGTCCTATGAG+AGG - chr6_4:72483725-72483744 None:intergenic 55.0%
CTCTCATAGGACACGGCTTC+TGG + chr6_4:72483723-72483742 Msa0995730:intron 55.0%
CTCAGTTGGTTGGATGGGGT+CGG - chr6_4:72483948-72483967 None:intergenic 55.0%
CGTCCTCAGTTGGTTGGATG+GGG - chr6_4:72483952-72483971 None:intergenic 55.0%
CTCGTCCTCAGTTGGTTGGA+TGG - chr6_4:72483954-72483973 None:intergenic 55.0%
CATCCAACCAACTGAGGACG+AGG + chr6_4:72483952-72483971 Msa0995730:CDS 55.0%
CAGAAGCCATGTCCTACGAG+AGG - chr6_4:72484087-72484106 None:intergenic 55.0%
CTCTCGTAGGACATGGCTTC+TGG + chr6_4:72484085-72484104 Msa0995730:intron 55.0%
! CTCGGTTGGTTGGATGGGTT+CGG - chr6_4:72484128-72484147 None:intergenic 55.0%
! TCGTCCTCGGTTGGTTGGAT+GGG - chr6_4:72484133-72484152 None:intergenic 55.0%
ATTTCAGCCTCGTCCTCGGT+TGG - chr6_4:72484142-72484161 None:intergenic 55.0%
CAGAAGCCGTGTCCTATGAG+AGG - chr6_4:72483725-72483744 None:intergenic 55.0%
CTCTCATAGGACACGGCTTC+TGG + chr6_4:72483723-72483742 Msa0995730:intron 55.0%
!! TCGTCGTCAGTTGGTTCGTC+GGG - chr6_4:72484309-72484328 None:intergenic 55.0%
!! CTCGTCGTCAGTTGGTTCGT+CGG - chr6_4:72484310-72484329 None:intergenic 55.0%
ACGTTGATGCCGATGCCGAA+AGG + chr6_4:72484451-72484470 Msa0995730:CDS 55.0%
! GTGCAACGTCGCGGATTGAG+AGG + chr6_4:72480510-72480529 Msa0995730:intron 60.0%
! GTTGATTGGTTGGGGTCGGC+AGG - chr6_4:72483762-72483781 None:intergenic 60.0%
CGACCCCATCCAACCAACTG+AGG + chr6_4:72483946-72483965 Msa0995730:CDS 60.0%
CAGCCTCGTCCTCAGTTGGT+TGG - chr6_4:72483958-72483977 None:intergenic 60.0%
! GTTGGTTGGATGGGTTCGGC+AGG - chr6_4:72484124-72484143 None:intergenic 60.0%
CGAACCCATCCAACCAACCG+AGG + chr6_4:72484126-72484145 Msa0995730:CDS 60.0%
! CTCGTCCTCGGTTGGTTGGA+TGG - chr6_4:72484134-72484153 None:intergenic 60.0%
CATCCAACCAACCGAGGACG+AGG + chr6_4:72484132-72484151 Msa0995730:CDS 60.0%
!! CGTCGTCAGTTGGTTCGTCG+GGG - chr6_4:72484308-72484327 None:intergenic 60.0%
CGACGAACCAACTGACGACG+AGG + chr6_4:72484308-72484327 Msa0995730:CDS 60.0%
GAGACGCTCCAACGTGACCG+TGG + chr6_4:72478920-72478939 Msa0995730:CDS 65.0%
ACAGCTCGAGCCTCGTGTCC+AGG + chr6_4:72481364-72481383 Msa0995730:CDS 65.0%
CAGCTCGAGCCTCGTGTCCA+GGG + chr6_4:72481365-72481384 Msa0995730:CDS 65.0%
AGCTCGAGCCTCGTGTCCAG+GGG + chr6_4:72481366-72481385 Msa0995730:CDS 65.0%
GAGCCTCGTGTCCAGGGGAA+AGG + chr6_4:72481371-72481390 Msa0995730:CDS 65.0%
GTTGGTTGGATGGGGTCGGC+AGG - chr6_4:72483944-72483963 None:intergenic 65.0%
CAGCCTCGTCCTCGGTTGGT+TGG - chr6_4:72484138-72484157 None:intergenic 65.0%
!! GTTGGTTCGTCGGGGTCACC+TGG - chr6_4:72484300-72484319 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 72478899 72485154 72478899 ID=Msa0995730;Name=Msa0995730
chr6_4 mRNA 72478899 72485154 72478899 ID=Msa0995730-mRNA-1;Parent=Msa0995730;Name=Msa0995730-mRNA-1;_AED=0.15;_eAED=0.15;_QI=12|1|1|1|0.92|0.85|14|309|388
chr6_4 exon 72478899 72479000 72478899 ID=Msa0995730-mRNA-1:exon:13500;Parent=Msa0995730-mRNA-1
chr6_4 exon 72479077 72479179 72479077 ID=Msa0995730-mRNA-1:exon:13501;Parent=Msa0995730-mRNA-1
chr6_4 exon 72480297 72480376 72480297 ID=Msa0995730-mRNA-1:exon:13502;Parent=Msa0995730-mRNA-1
chr6_4 exon 72481110 72481439 72481110 ID=Msa0995730-mRNA-1:exon:13503;Parent=Msa0995730-mRNA-1
chr6_4 exon 72481688 72481764 72481688 ID=Msa0995730-mRNA-1:exon:13504;Parent=Msa0995730-mRNA-1
chr6_4 exon 72482497 72482539 72482497 ID=Msa0995730-mRNA-1:exon:13505;Parent=Msa0995730-mRNA-1
chr6_4 exon 72482615 72482677 72482615 ID=Msa0995730-mRNA-1:exon:13506;Parent=Msa0995730-mRNA-1
chr6_4 exon 72483732 72483803 72483732 ID=Msa0995730-mRNA-1:exon:13507;Parent=Msa0995730-mRNA-1
chr6_4 exon 72483914 72483985 72483914 ID=Msa0995730-mRNA-1:exon:13508;Parent=Msa0995730-mRNA-1
chr6_4 exon 72484094 72484165 72484094 ID=Msa0995730-mRNA-1:exon:13509;Parent=Msa0995730-mRNA-1
chr6_4 exon 72484270 72484341 72484270 ID=Msa0995730-mRNA-1:exon:13510;Parent=Msa0995730-mRNA-1
chr6_4 exon 72484441 72484472 72484441 ID=Msa0995730-mRNA-1:exon:13511;Parent=Msa0995730-mRNA-1
chr6_4 exon 72484577 72484668 72484577 ID=Msa0995730-mRNA-1:exon:13512;Parent=Msa0995730-mRNA-1
chr6_4 exon 72484877 72485154 72484877 ID=Msa0995730-mRNA-1:exon:13513;Parent=Msa0995730-mRNA-1
chr6_4 five_prime_UTR 72478899 72478910 72478899 ID=Msa0995730-mRNA-1:five_prime_utr;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72478911 72479000 72478911 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72479077 72479179 72479077 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72480297 72480376 72480297 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72481110 72481439 72481110 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72481688 72481764 72481688 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72482497 72482539 72482497 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72482615 72482677 72482615 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72483732 72483803 72483732 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72483914 72483985 72483914 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72484094 72484165 72484094 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72484270 72484341 72484270 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72484441 72484472 72484441 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 CDS 72484577 72484637 72484577 ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1
chr6_4 three_prime_UTR 72484638 72484668 72484638 ID=Msa0995730-mRNA-1:three_prime_utr;Parent=Msa0995730-mRNA-1
chr6_4 three_prime_UTR 72484877 72485154 72484877 ID=Msa0995730-mRNA-1:three_prime_utr;Parent=Msa0995730-mRNA-1
Gene Sequence

>Msa0995730

ATGAACTCGGAGACGCTCCAACGTGACCGTGGAACCAATGCAACTCACAACAACGCCGTCGTAACAGAGAGAAGGTTAACACGCAGCGAACTTCTCGCAAAGAAGAACGCAAATGAACAACTCATCAAAGCCGCATATAGCATAAAGGATCACCTCGCTTCTTTTACCATTTATCGCCGCTTCGAAATTAACGGTCTCTCCGTGTGTTTAAAGTCAGGACATGGCACTAACCTTTCCTCTCCTGTTACGCAATATATTCAGAGGCTTCTTAAGCTTAACATGGAAGGGCCATATGGATCTGAGTGGCAAGAGGAAGAAAAGGTGAAGCGTAGAGAAATGGTTGATCCTGAAGCACGCTATATATTTGTGCACGAGGTTACTAATGCAAATGCTGACGAGATGACAACAGTGTTGACTGAGGAAGATCCTTCAACTAGTCGTCAAGAAGATAGTGGTCCCTTGGTTGGATTTGTACATTACCGCTTTGTTTTGGAAGAAGAGGTACCAGTACTTTATGTGTATGAACTACAGCTCGAGCCTCGTGTCCAGGGGAAAGGATTGGGAAAGCTTCTAATGGAACTTATTGAGCTTATCGCCCAAAAGAACTGCATGGGTGCTGTCATGCTAACTGTTCAAAGGGCGAACATATCAGCTATGAATTTTTACACTAGTAAACTAAGATATATCATATCAGCCACGTCACCTTCTAAAGTTGATCCAATGATGGAGAAGAGTTATGAAATTCTTTGCAGAATATTTAATGATGAAGCTAAAACTATTTTTGAGGACACGGCTTCTGGCGTTGATACTTTTCCTGCCGACCCCAACCAATCAACTGAGCATGAGGCTGAAATTCCTGACATGACTTCGGGCATTGATACTTTTCCTGCCGACCCCATCCAACCAACTGAGGACGAGGCTGAAATTCTTGACATGGCTTCTGGCATTGATACTTTTCCTGCCGAACCCATCCAACCAACCGAGGACGAGGCTGAAATTCCTGACACGGCTTCTGGCGTTGATACTTTTCCAGGTGACCCCGACGAACCAACTGACGACGAGGCTGAAATTCCTTCGGATGATGACGTTGATGCCGATGCCGAAAGGATTGAAACAACGGACATGAGGAAGTTAGCCAATAGGATGTATTTCGGAATTCCTGAATAG

Protein sequence

>Msa0995730

MNSETLQRDRGTNATHNNAVVTERRLTRSELLAKKNANEQLIKAAYSIKDHLASFTIYRRFEINGLSVCLKSGHGTNLSSPVTQYIQRLLKLNMEGPYGSEWQEEEKVKRREMVDPEARYIFVHEVTNANADEMTTVLTEEDPSTSRQEDSGPLVGFVHYRFVLEEEVPVLYVYELQLEPRVQGKGLGKLLMELIELIAQKNCMGAVMLTVQRANISAMNFYTSKLRYIISATSPSKVDPMMEKSYEILCRIFNDEAKTIFEDTASGVDTFPADPNQSTEHEAEIPDMTSGIDTFPADPIQPTEDEAEILDMASGIDTFPAEPIQPTEDEAEIPDTASGVDTFPGDPDEPTDDEAEIPSDDDVDADAERIETTDMRKLANRMYFGIPE*