Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995730 | AES76151.1 | 87.879 | 264 | 26 | 1 | 1 | 264 | 1 | 258 | 4.86e-166 | 475 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995730 | sp|Q568K5|NAA40_DANRE | 34.632 | 231 | 125 | 4 | 23 | 251 | 10 | 216 | 2.23e-28 | 114 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995730 | G7KHW9 | 87.879 | 264 | 26 | 1 | 1 | 264 | 1 | 258 | 2.32e-166 | 475 |
Gene ID | Type | Classification |
---|---|---|
Msa0995730 | TR | GNAT |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995730 | MtrunA17_Chr6g0479551 | 88.168 | 262 | 25 | 1 | 1 | 262 | 1 | 256 | 2.55e-169 | 473 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995730 | AT1G18335.1 | 50.566 | 265 | 119 | 4 | 3 | 263 | 6 | 262 | 6.55e-77 | 239 |
Msa0995730 | AT1G18335.3 | 50.758 | 264 | 118 | 4 | 3 | 262 | 6 | 261 | 3.59e-76 | 237 |
Msa0995730 | AT1G18335.2 | 50.758 | 264 | 118 | 4 | 3 | 262 | 6 | 261 | 3.59e-76 | 237 |
Find 116 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTTACATCTCGTTATTT+TGG | 0.133488 | 6_4:+72484972 | Msa0995730:three_prime_UTR |
AATTTCGAAGCGGCGATAAA+TGG | 0.261458 | 6_4:-72479153 | None:intergenic |
CTCTCATAGGACACGGCTTC+TGG | 0.284691 | 6_4:+72483723 | Msa0995730:intron |
CTCTCATAGGACACGGCTTC+TGG | 0.284691 | 6_4:+72484261 | Msa0995730:intron |
CTCTGAATATATTGCGTAAC+AGG | 0.291924 | 6_4:-72480344 | None:intergenic |
TTAGCTTAAGAGCTCTATTC+AGG | 0.293764 | 6_4:-72484629 | None:intergenic |
CTCTCGTAGGACATGGCTTC+TGG | 0.304045 | 6_4:+72484085 | Msa0995730:intron |
CAGCCTCATGCTCAGTTGAT+TGG | 0.328993 | 6_4:-72483773 | None:intergenic |
TCATGCTCAGTTGATTGGTT+GGG | 0.334696 | 6_4:-72483768 | None:intergenic |
ACCATTGGATCAACTTTAGA+AGG | 0.362053 | 6_4:-72482519 | None:intergenic |
CTCGTCCTCGGTTGGTTGGA+TGG | 0.363059 | 6_4:-72484131 | None:intergenic |
AGCGTCTCCGAGTTCATTGC+TGG | 0.379618 | 6_4:-72478905 | None:intergenic |
TGTACATTACCGCTTTGTTT+TGG | 0.388601 | 6_4:+72481307 | Msa0995730:CDS |
TCGTCGTCAGTTGGTTCGTC+GGG | 0.389680 | 6_4:-72484306 | None:intergenic |
ATATATTCAGAGGCTTCTTA+AGG | 0.404094 | 6_4:+72480355 | Msa0995730:CDS |
CTCATGCTCAGTTGATTGGT+TGG | 0.408139 | 6_4:-72483769 | None:intergenic |
TATCGCCGCTTCGAAATTAA+CGG | 0.410757 | 6_4:+72479158 | Msa0995730:CDS |
CTCGGTTGGTTGGATGGGTT+CGG | 0.413998 | 6_4:-72484125 | None:intergenic |
CTCTCATAGGACATGACTTC+GGG | 0.417664 | 6_4:+72483905 | Msa0995730:intron |
CTCGTCCTCAGTTGGTTGGA+TGG | 0.420386 | 6_4:-72483951 | None:intergenic |
TTAGCCAATAGGATGTATTT+CGG | 0.421672 | 6_4:+72484602 | Msa0995730:CDS |
TCGTCCTCAGTTGGTTGGAT+GGG | 0.424743 | 6_4:-72483950 | None:intergenic |
CGTGTCCAGGGGAAAGGATT+GGG | 0.426522 | 6_4:+72481377 | Msa0995730:CDS |
CAAAGCCGCATATAGCATAA+AGG | 0.444226 | 6_4:+72479112 | Msa0995730:CDS |
ACAGCTCGAGCCTCGTGTCC+AGG | 0.444598 | 6_4:+72481364 | Msa0995730:CDS |
TCGTCCTCGGTTGGTTGGAT+GGG | 0.450341 | 6_4:-72484130 | None:intergenic |
TATAATATGTTTGATATCGC+AGG | 0.453052 | 6_4:+72485034 | Msa0995730:three_prime_UTR |
ACAAATATATAGCGTGCTTC+AGG | 0.453405 | 6_4:-72481182 | None:intergenic |
AGCTCGAACTTGCAGGAGTT+AGG | 0.457690 | 6_4:-72485066 | None:intergenic |
CAGCCTCGTCCTCGGTTGGT+TGG | 0.458465 | 6_4:-72484135 | None:intergenic |
AATTCCGAAATACATCCTAT+TGG | 0.458467 | 6_4:-72484606 | None:intergenic |
TCTTCTTGACGACTAGTTGA+AGG | 0.460099 | 6_4:-72481263 | None:intergenic |
AAAGGTGAAGCGTAGAGAAA+TGG | 0.460189 | 6_4:+72481154 | Msa0995730:CDS |
CTCAGTTGATTGGTTGGGGT+CGG | 0.462972 | 6_4:-72483763 | None:intergenic |
GTTGATTGGTTGGGGTCGGC+AGG | 0.463023 | 6_4:-72483759 | None:intergenic |
CAGCCTCGTCCTCAGTTGGT+TGG | 0.465098 | 6_4:-72483955 | None:intergenic |
GTTGGTTGGATGGGGTCGGC+AGG | 0.465781 | 6_4:-72483941 | None:intergenic |
CTTAACATGGAAGGGCCATA+TGG | 0.467460 | 6_4:+72481110 | Msa0995730:CDS |
GCTTTCCCAATCCTTTCCCC+TGG | 0.468580 | 6_4:-72481382 | None:intergenic |
CAGGATAGTGAATGAGTTGG+AGG | 0.471220 | 6_4:+72484874 | Msa0995730:intron |
AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6_4:+72481391 | Msa0995730:CDS |
GTTGGTTCGTCGGGGTCACC+TGG | 0.481274 | 6_4:-72484297 | None:intergenic |
CTCGTCGTCAGTTGGTTCGT+CGG | 0.482006 | 6_4:-72484307 | None:intergenic |
GGCGTTGTTGTGAGTTGCAT+TGG | 0.483691 | 6_4:-72478945 | None:intergenic |
CTCAGTTGGTTGGATGGGGT+CGG | 0.486235 | 6_4:-72483945 | None:intergenic |
CAGCTCGAGCCTCGTGTCCA+GGG | 0.491833 | 6_4:+72481365 | Msa0995730:CDS |
GAAGATAGTGGTCCCTTGGT+TGG | 0.492453 | 6_4:+72481281 | Msa0995730:CDS |
TCCAAAATAACGAGATGTAA+AGG | 0.493796 | 6_4:-72484973 | None:intergenic |
CATGCTCAGTTGATTGGTTG+GGG | 0.499435 | 6_4:-72483767 | None:intergenic |
TATTGAGCTTATCGCCCAAA+AGG | 0.500241 | 6_4:+72481418 | Msa0995730:CDS |
GTTGGTTGGATGGGTTCGGC+AGG | 0.501696 | 6_4:-72484121 | None:intergenic |
CAATGCTAACCTTTCGGCAT+CGG | 0.501747 | 6_4:-72484460 | None:intergenic |
ACATGAGGAAGTTAGCCAAT+AGG | 0.503838 | 6_4:+72484591 | Msa0995730:CDS |
CGTCCTCAGTTGGTTGGATG+GGG | 0.507573 | 6_4:-72483949 | None:intergenic |
AGGAATTTCAGCCTCGTCCT+CGG | 0.509764 | 6_4:-72484143 | None:intergenic |
TCTTGCCACTCAGATCCATA+TGG | 0.513626 | 6_4:-72481125 | None:intergenic |
CTCTCCGTGTGTTTAAAGTC+AGG | 0.520731 | 6_4:+72480299 | Msa0995730:CDS |
CTGTCATGCTAACTGTTCAA+AGG | 0.521016 | 6_4:+72481701 | Msa0995730:CDS |
TCGTGTCCAGGGGAAAGGAT+TGG | 0.525244 | 6_4:+72481376 | Msa0995730:CDS |
TGAGTGGCAAGAGGAAGAAA+AGG | 0.525897 | 6_4:+72481136 | Msa0995730:CDS |
ATCTACAGCTTAACATGGAA+GGG | 0.529467 | 6_4:+72481102 | Msa0995730:intron |
ATTTCAGCCTCGTCCTCGGT+TGG | 0.531048 | 6_4:-72484139 | None:intergenic |
GAGCCTCGTGTCCAGGGGAA+AGG | 0.535185 | 6_4:+72481371 | Msa0995730:CDS |
AATCTACAGCTTAACATGGA+AGG | 0.544882 | 6_4:+72481101 | Msa0995730:intron |
ATTTCAGCCTCGTCGTCAGT+TGG | 0.553072 | 6_4:-72484315 | None:intergenic |
CCGAGTTCATTGCTGGTGAG+TGG | 0.555140 | 6_4:-72478898 | None:intergenic |
ACCTTCTAAAGTTGATCCAA+TGG | 0.555355 | 6_4:+72482518 | Msa0995730:CDS |
TCAAGAAGATAGTGGTCCCT+TGG | 0.557490 | 6_4:+72481277 | Msa0995730:CDS |
CATCCAACCAACCGAGGACG+AGG | 0.558069 | 6_4:+72484132 | Msa0995730:CDS |
ACGTTGATGCCGATGCCGAA+AGG | 0.559474 | 6_4:+72484451 | Msa0995730:CDS |
ATTTCAGCCTCGTCCTCAGT+TGG | 0.560819 | 6_4:-72483959 | None:intergenic |
CCTCTCATAGGACATGACTT+CGG | 0.565717 | 6_4:+72483904 | Msa0995730:intron |
GCTAATGATGTCGTTGCTGA+AGG | 0.566188 | 6_4:+72484647 | Msa0995730:three_prime_UTR |
TGTGAGTTGCATTGGTTCCA+CGG | 0.567819 | 6_4:-72478937 | None:intergenic |
GGATTTATCTCAAATTCCCA+AGG | 0.569573 | 6_4:+72484993 | Msa0995730:three_prime_UTR |
CATCCAACCAACTGAGGACG+AGG | 0.575763 | 6_4:+72483952 | Msa0995730:CDS |
TTGCAGGATAGTGAATGAGT+TGG | 0.581840 | 6_4:+72484871 | Msa0995730:intron |
TGTCATGCTAACTGTTCAAA+GGG | 0.583387 | 6_4:+72481702 | Msa0995730:CDS |
AGTTCATACACATAAAGTAC+TGG | 0.583472 | 6_4:-72481341 | None:intergenic |
TAACCTTCTCTCTGTTACGA+CGG | 0.587012 | 6_4:-72478966 | None:intergenic |
CCACTCACCAGCAATGAACT+CGG | 0.587556 | 6_4:+72478898 | None:intergenic |
CTGTTACGCAATATATTCAG+AGG | 0.588076 | 6_4:+72480345 | Msa0995730:CDS |
ACTAGTCGTCAAGAAGATAG+TGG | 0.589965 | 6_4:+72481269 | Msa0995730:CDS |
AAAGGAAAAGTGCAAGACAC+AGG | 0.590134 | 6_4:-72484955 | None:intergenic |
ATAATATGTTTGATATCGCA+GGG | 0.594870 | 6_4:+72485035 | Msa0995730:three_prime_UTR |
CAACCAATCAACTGAGCATG+AGG | 0.596952 | 6_4:+72483770 | Msa0995730:CDS |
AATCCTTTCCCCTGGACACG+AGG | 0.597062 | 6_4:-72481374 | None:intergenic |
CATTGGTTCCACGGTCACGT+TGG | 0.600954 | 6_4:-72478928 | None:intergenic |
TCCTTTGTCACATTACTGAG+TGG | 0.604079 | 6_4:+72484931 | Msa0995730:three_prime_UTR |
GTGATCCTTTATGCTATATG+CGG | 0.614292 | 6_4:-72479117 | None:intergenic |
CGACCCCATCCAACCAACTG+AGG | 0.623573 | 6_4:+72483946 | Msa0995730:CDS |
AGCTCGAGCCTCGTGTCCAG+GGG | 0.623716 | 6_4:+72481366 | Msa0995730:CDS |
AATATATTGCGTAACAGGAG+AGG | 0.626761 | 6_4:-72480339 | None:intergenic |
GCCACTCAGTAATGTGACAA+AGG | 0.628264 | 6_4:-72484932 | None:intergenic |
GGATTGAAACAACGGACATG+AGG | 0.632408 | 6_4:+72484576 | Msa0995730:intron |
AAGGAAAAGTGCAAGACACA+GGG | 0.635168 | 6_4:-72484954 | None:intergenic |
ATATATCAGGATTGAAACAA+CGG | 0.638072 | 6_4:+72484568 | Msa0995730:intron |
GAGACGCTCCAACGTGACCG+TGG | 0.649093 | 6_4:+72478920 | Msa0995730:CDS |
ATTGCGTAACAGGAGAGGAA+AGG | 0.649302 | 6_4:-72480334 | None:intergenic |
ATATGGATCTGAGTGGCAAG+AGG | 0.653218 | 6_4:+72481127 | Msa0995730:CDS |
TCTAAATCTACAGCTTAACA+TGG | 0.653637 | 6_4:+72481097 | Msa0995730:intron |
CGAACCCATCCAACCAACCG+AGG | 0.655141 | 6_4:+72484126 | Msa0995730:CDS |
CGACGAACCAACTGACGACG+AGG | 0.657612 | 6_4:+72484308 | Msa0995730:CDS |
GTGTGTTTAAAGTCAGGACA+TGG | 0.661363 | 6_4:+72480305 | Msa0995730:CDS |
ACGCTATATATTTGTGCACG+AGG | 0.663923 | 6_4:+72481190 | Msa0995730:CDS |
ACGCCGTCGTAACAGAGAGA+AGG | 0.663934 | 6_4:+72478963 | Msa0995730:CDS |
AGTTACCGTTAATTTCGAAG+CGG | 0.666945 | 6_4:-72479163 | None:intergenic |
TAATGTACAAATCCAACCAA+GGG | 0.669573 | 6_4:-72481293 | None:intergenic |
GTAATGTACAAATCCAACCA+AGG | 0.669580 | 6_4:-72481294 | None:intergenic |
ATGTCCTGACTTTAAACACA+CGG | 0.673198 | 6_4:-72480303 | None:intergenic |
CGTCGTCAGTTGGTTCGTCG+GGG | 0.674091 | 6_4:-72484305 | None:intergenic |
ATCAACTTTAGAAGGTGACG+TGG | 0.674095 | 6_4:-72482511 | None:intergenic |
GATGACAACAGTGTTGACTG+AGG | 0.683653 | 6_4:+72481235 | Msa0995730:CDS |
GATAAATGGTAAAAGAAGCG+AGG | 0.704509 | 6_4:-72479139 | None:intergenic |
CCTCTTCTTCCAAAACAAAG+CGG | 0.723548 | 6_4:-72481316 | None:intergenic |
AAGGGCCATATGGATCTGAG+TGG | 0.737924 | 6_4:+72481120 | Msa0995730:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAAATACAATTAAATTAATA+AGG | - | chr6_4:72481890-72481909 | None:intergenic | 10.0% |
!! | TTCAATTTATAAATTTGTAA+TGG | + | chr6_4:72482131-72482150 | Msa0995730:intron | 10.0% |
!! | ATTCTCAAAATAAAAATTTA+AGG | + | chr6_4:72482236-72482255 | Msa0995730:intron | 10.0% |
!! | ATAAAAAAAACAATAAAGAA+AGG | + | chr6_4:72483479-72483498 | Msa0995730:intron | 10.0% |
!!! | CTTTTTTTTTTAAATTTTGA+AGG | + | chr6_4:72483834-72483853 | Msa0995730:intron | 10.0% |
!!! | TTCTTTTTTTAAAATTTTGA+AGG | + | chr6_4:72484014-72484033 | Msa0995730:intron | 10.0% |
!!! | TTTCTTTTTTAAAATTTTGA+AGG | + | chr6_4:72484367-72484386 | Msa0995730:intron | 10.0% |
!!! | TAGTTTATTTTTATTTTAGT+CGG | + | chr6_4:72484422-72484441 | Msa0995730:intron | 10.0% |
!!! | GTAAAATTAACATTTAACTT+AGG | + | chr6_4:72479624-72479643 | Msa0995730:intron | 15.0% |
!!! | AAATTTGTTTATTGAATTAG+CGG | - | chr6_4:72480005-72480024 | None:intergenic | 15.0% |
!! | TGATAGTATAAACAAATAAA+AGG | - | chr6_4:72480982-72481001 | None:intergenic | 15.0% |
!!! | CAATTTATTGATTTTTTTAC+AGG | + | chr6_4:72481607-72481626 | Msa0995730:intron | 15.0% |
!! | ATAGAATATAGATATATATG+CGG | - | chr6_4:72482016-72482035 | None:intergenic | 15.0% |
!! | TTCATAATTCTCATAATATT+TGG | + | chr6_4:72482346-72482365 | Msa0995730:intron | 15.0% |
!! | ATTATAGATAATCAATCTAA+TGG | - | chr6_4:72482698-72482717 | None:intergenic | 15.0% |
!!! | CAAATTTTTATTTAGATTCA+TGG | + | chr6_4:72483360-72483379 | Msa0995730:intron | 15.0% |
!! | AAGGAAATTAAGATATTTAA+TGG | + | chr6_4:72483498-72483517 | Msa0995730:intron | 15.0% |
!!! | TTTTTCAATTGAGATAATGA+AGG | + | chr6_4:72479744-72479763 | Msa0995730:intron | 20.0% |
!! | CTTACTACATTATTAATTAC+AGG | + | chr6_4:72480128-72480147 | Msa0995730:intron | 20.0% |
!! | ATAGTAACCTATAGTTTATA+AGG | + | chr6_4:72480162-72480181 | Msa0995730:intron | 20.0% |
!!! | ATTATAGCCTTATAAACTAT+AGG | - | chr6_4:72480172-72480191 | None:intergenic | 20.0% |
!! | TTAATATTTCAACATAGCTA+TGG | + | chr6_4:72480197-72480216 | Msa0995730:intron | 20.0% |
!! | GTAAACACTTGTAATTTAAT+GGG | + | chr6_4:72480620-72480639 | Msa0995730:intron | 20.0% |
!! | TAGTATAAACAAATAAAAGG+TGG | - | chr6_4:72480979-72480998 | None:intergenic | 20.0% |
!! | TATCAAAGATCATATTAGAT+GGG | - | chr6_4:72481647-72481666 | None:intergenic | 20.0% |
!! | ATATCAAAGATCATATTAGA+TGG | - | chr6_4:72481648-72481667 | None:intergenic | 20.0% |
!!! | ATTTTTACACTAGTAAACTA+AGG | + | chr6_4:72481743-72481762 | Msa0995730:CDS | 20.0% |
!! | AGAGATAAAAAATTCAATGA+TGG | - | chr6_4:72481790-72481809 | None:intergenic | 20.0% |
!! | GTGTAATAGACTTATATATA+AGG | + | chr6_4:72482036-72482055 | Msa0995730:intron | 20.0% |
!! | TTGAAGTAAGAACAATATTA+TGG | + | chr6_4:72482191-72482210 | Msa0995730:intron | 20.0% |
!! | AGTTTATGAAAGTAGAAAAT+AGG | - | chr6_4:72482311-72482330 | None:intergenic | 20.0% |
!! | GAATTATGAAAGTAGAAAAT+AGG | - | chr6_4:72482336-72482355 | None:intergenic | 20.0% |
!! | GAAAAATCTAGAAAGTTATT+AGG | - | chr6_4:72482403-72482422 | None:intergenic | 20.0% |
!!! | AAATGCCTTTTTTATTAGTT+CGG | + | chr6_4:72482935-72482954 | Msa0995730:intron | 20.0% |
!!! | ATTTTTCTTCTACTTTTTTG+TGG | + | chr6_4:72483232-72483251 | Msa0995730:intron | 20.0% |
!!! | TTTTTCTTCTACTTTTTTGT+GGG | + | chr6_4:72483233-72483252 | Msa0995730:intron | 20.0% |
!! | TAAAAAAGAAAAGAAAAGTC+TGG | + | chr6_4:72483444-72483463 | Msa0995730:intron | 20.0% |
!! | AAAAAAGAAAAGAAAAGTCT+GGG | + | chr6_4:72483445-72483464 | Msa0995730:intron | 20.0% |
!! | ATAAAATCAAATATACTCAC+AGG | - | chr6_4:72483804-72483823 | None:intergenic | 20.0% |
!!! | GTTTCTTTTTAAAGTTTTGA+AGG | + | chr6_4:72484192-72484211 | Msa0995730:intron | 20.0% |
!!! | TTTTTGTAGTACTTTTTATC+AGG | + | chr6_4:72484484-72484503 | Msa0995730:intron | 20.0% |
!!! | TTTTGTAGTACTTTTTATCA+GGG | + | chr6_4:72484485-72484504 | Msa0995730:intron | 20.0% |
!! | AGATAAAGAATTAGAAACAA+AGG | - | chr6_4:72484540-72484559 | None:intergenic | 20.0% |
!!! | AACTTTTTGGTCATTTTTTA+TGG | + | chr6_4:72484907-72484926 | Msa0995730:three_prime_UTR | 20.0% |
!! | AAACAAAAAATTGTTTCCTT+GGG | - | chr6_4:72485012-72485031 | None:intergenic | 20.0% |
!! | AAAACAAAAAATTGTTTCCT+TGG | - | chr6_4:72485013-72485032 | None:intergenic | 20.0% |
!!! | ATACTATTTTGAAGAACTTG+TGG | - | chr6_4:72479464-72479483 | None:intergenic | 25.0% |
!! | GCTTATTTGAGTTTATCTAT+TGG | - | chr6_4:72479501-72479520 | None:intergenic | 25.0% |
!! | TTAACTGAATTTGAAGTGTT+TGG | + | chr6_4:72479602-72479621 | Msa0995730:intron | 25.0% |
! | ATAATGAAGGTAAAAATGAG+AGG | + | chr6_4:72479757-72479776 | Msa0995730:intron | 25.0% |
! | TTATAAAGTATGAGCTCAAA+TGG | + | chr6_4:72479786-72479805 | Msa0995730:intron | 25.0% |
! | TTTGTATAACTCTTTGGTAA+TGG | - | chr6_4:72479882-72479901 | None:intergenic | 25.0% |
! | TGTAAGTTTGTATAACTCTT+TGG | - | chr6_4:72479888-72479907 | None:intergenic | 25.0% |
! | TAATGTAGTAAGTAGAAGTT+GGG | - | chr6_4:72480120-72480139 | None:intergenic | 25.0% |
! | ATAATGTAGTAAGTAGAAGT+TGG | - | chr6_4:72480121-72480140 | None:intergenic | 25.0% |
! | CTGGAAATAATGTAAAACTT+AGG | - | chr6_4:72480277-72480296 | None:intergenic | 25.0% |
!! | CTAAGTTTTACATTATTTCC+AGG | + | chr6_4:72480275-72480294 | Msa0995730:intron | 25.0% |
!! | ACAGTTATATTTGTTGAGTA+TGG | + | chr6_4:72480433-72480452 | Msa0995730:intron | 25.0% |
! | GGTAAACACTTGTAATTTAA+TGG | + | chr6_4:72480619-72480638 | Msa0995730:intron | 25.0% |
!! | TTACAATGAAGGTGAATTTT+TGG | - | chr6_4:72480885-72480904 | None:intergenic | 25.0% |
!!! | TGAATTTTGTTTTTATCACG+AGG | + | chr6_4:72480942-72480961 | Msa0995730:intron | 25.0% |
!!! | GAATTTTGTTTTTATCACGA+GGG | + | chr6_4:72480943-72480962 | Msa0995730:intron | 25.0% |
!! | TGTTAGCTTATTCATTGAAA+TGG | + | chr6_4:72481048-72481067 | Msa0995730:intron | 25.0% |
!! | GTTAGCTTATTCATTGAAAT+GGG | + | chr6_4:72481049-72481068 | Msa0995730:intron | 25.0% |
!! | AAAACAATTAAGCACCTTTT+GGG | - | chr6_4:72481435-72481454 | None:intergenic | 25.0% |
!! | AAAAACAATTAAGCACCTTT+TGG | - | chr6_4:72481436-72481455 | None:intergenic | 25.0% |
! | AGAGAATTATTATGTTGCAA+AGG | + | chr6_4:72481485-72481504 | Msa0995730:intron | 25.0% |
!!! | ATATTTTCTGGAATGCATTA+AGG | - | chr6_4:72481915-72481934 | None:intergenic | 25.0% |
!! | AAAAGCAGAGAAATATTTTC+TGG | - | chr6_4:72481927-72481946 | None:intergenic | 25.0% |
!! | TTTGTAATGGTAATGTTAGT+TGG | + | chr6_4:72482144-72482163 | Msa0995730:intron | 25.0% |
! | AAAAATTTAAGGATCTTTGC+AGG | + | chr6_4:72482247-72482266 | Msa0995730:intron | 25.0% |
! | AGTTTATGCAAGTAGAAAAT+AGG | - | chr6_4:72482286-72482305 | None:intergenic | 25.0% |
! | ACGAAGACTAAACATAAAAA+GGG | - | chr6_4:72482446-72482465 | None:intergenic | 25.0% |
! | AACGAAGACTAAACATAAAA+AGG | - | chr6_4:72482447-72482466 | None:intergenic | 25.0% |
!! | ATAACACTTACAATTTTGCA+GGG | - | chr6_4:72482553-72482572 | None:intergenic | 25.0% |
!!! | TGAAGCTAAAACTATTTTTG+AGG | + | chr6_4:72482656-72482675 | Msa0995730:CDS | 25.0% |
!! | ACAAAAAATATTAGCCTAGA+TGG | - | chr6_4:72482792-72482811 | None:intergenic | 25.0% |
!!! | AATGCCTTTTTTATTAGTTC+GGG | + | chr6_4:72482936-72482955 | Msa0995730:intron | 25.0% |
! | TTAATACATCCAAGATATCA+TGG | - | chr6_4:72482990-72483009 | None:intergenic | 25.0% |
!!! | CCTTAAGTATTGATAAAGAA+GGG | - | chr6_4:72483085-72483104 | None:intergenic | 25.0% |
!!! | TCCTTAAGTATTGATAAAGA+AGG | - | chr6_4:72483086-72483105 | None:intergenic | 25.0% |
!! | CTCTACTATCTTTCTTTTAT+TGG | + | chr6_4:72483121-72483140 | Msa0995730:intron | 25.0% |
! | AAAAAGAAAAGAAAAGTCTG+GGG | + | chr6_4:72483446-72483465 | Msa0995730:intron | 25.0% |
! | TTCCTATCAAAATTTATACC+TGG | + | chr6_4:72483619-72483638 | Msa0995730:intron | 25.0% |
! | ATAAAATCAACTATACTCAC+AGG | - | chr6_4:72484166-72484185 | None:intergenic | 25.0% |
! | ATAAAATCAACTATACTCAC+AGG | - | chr6_4:72484166-72484185 | None:intergenic | 25.0% |
! | AAAAATCAATGCTAACCTTT+CGG | - | chr6_4:72484469-72484488 | None:intergenic | 25.0% |
!!! | TATCTGTTGATTCATATATC+AGG | + | chr6_4:72484555-72484574 | Msa0995730:intron | 25.0% |
! | ATATATCAGGATTGAAACAA+CGG | + | chr6_4:72484568-72484587 | Msa0995730:intron | 25.0% |
!!! | AAAACATGAGAGGTTTTATT+GGG | - | chr6_4:72484849-72484868 | None:intergenic | 25.0% |
! | TATAATATGTTTGATATCGC+AGG | + | chr6_4:72485034-72485053 | Msa0995730:three_prime_UTR | 25.0% |
! | ATAATATGTTTGATATCGCA+GGG | + | chr6_4:72485035-72485054 | Msa0995730:three_prime_UTR | 25.0% |
TATAGCATAAACACTGATCA+TGG | + | chr6_4:72479293-72479312 | Msa0995730:intron | 30.0% | |
! | TGTTTTCATAAGCTATCATG+AGG | + | chr6_4:72479387-72479406 | Msa0995730:intron | 30.0% |
CCAAATAGTAACAAAGTCTT+AGG | - | chr6_4:72479538-72479557 | None:intergenic | 30.0% | |
CCTAAGACTTTGTTACTATT+TGG | + | chr6_4:72479535-72479554 | Msa0995730:intron | 30.0% | |
!! | AATTAGACACTCGTCATTTT+AGG | - | chr6_4:72479961-72479980 | None:intergenic | 30.0% |
ATATATTCAGAGGCTTCTTA+AGG | + | chr6_4:72480355-72480374 | Msa0995730:CDS | 30.0% | |
TTGAGTATGGCTCAAATTAA+CGG | + | chr6_4:72480446-72480465 | Msa0995730:intron | 30.0% | |
AACACTTGTAATTTAATGGG+TGG | + | chr6_4:72480623-72480642 | Msa0995730:intron | 30.0% | |
! | GTTTTCCAATAATGTAATGC+TGG | - | chr6_4:72480680-72480699 | None:intergenic | 30.0% |
TTTATCTGTTTGTGTAGAGT+TGG | + | chr6_4:72480774-72480793 | Msa0995730:intron | 30.0% | |
TTATCTGTTTGTGTAGAGTT+GGG | + | chr6_4:72480775-72480794 | Msa0995730:intron | 30.0% | |
ATAGGACAATCATGAACAAT+GGG | - | chr6_4:72480845-72480864 | None:intergenic | 30.0% | |
AATAGGACAATCATGAACAA+TGG | - | chr6_4:72480846-72480865 | None:intergenic | 30.0% | |
TTGTTCATGATTGTCCTATT+TGG | + | chr6_4:72480846-72480865 | Msa0995730:intron | 30.0% | |
TCTTCTTTCTCTTACAATGA+AGG | - | chr6_4:72480896-72480915 | None:intergenic | 30.0% | |
TACCAAGAACATAAAAAAGG+AGG | - | chr6_4:72481022-72481041 | None:intergenic | 30.0% | |
!!! | TCCTTTTTTATGTTCTTGGT+AGG | + | chr6_4:72481021-72481040 | Msa0995730:intron | 30.0% |
TTCAATGAATAAGCTAACAC+AGG | - | chr6_4:72481047-72481066 | None:intergenic | 30.0% | |
TCTAAATCTACAGCTTAACA+TGG | + | chr6_4:72481097-72481116 | Msa0995730:intron | 30.0% | |
TAATGTACAAATCCAACCAA+GGG | - | chr6_4:72481296-72481315 | None:intergenic | 30.0% | |
AGTTCATACACATAAAGTAC+TGG | - | chr6_4:72481344-72481363 | None:intergenic | 30.0% | |
! | AAACTCATTCTGACTTTTGA+TGG | + | chr6_4:72481458-72481477 | Msa0995730:intron | 30.0% |
!!! | ACTTTTTTTGTAGAACTGCA+TGG | + | chr6_4:72481675-72481694 | Msa0995730:intron | 30.0% |
!!! | CTTTTTTTGTAGAACTGCAT+GGG | + | chr6_4:72481676-72481695 | Msa0995730:intron | 30.0% |
CATGTCAAGTTTGATATGAA+TGG | + | chr6_4:72481821-72481840 | Msa0995730:intron | 30.0% | |
TCAAGTTTGATATGAATGGA+AGG | + | chr6_4:72481825-72481844 | Msa0995730:intron | 30.0% | |
CAAGTTTGATATGAATGGAA+GGG | + | chr6_4:72481826-72481845 | Msa0995730:intron | 30.0% | |
TCTTCTTGTAGACATATATG+TGG | - | chr6_4:72481967-72481986 | None:intergenic | 30.0% | |
!!! | ATAATATTTGGTTTTAGCCC+AGG | + | chr6_4:72482358-72482377 | Msa0995730:intron | 30.0% |
GATATCTTGATAGATAACCT+GGG | - | chr6_4:72482378-72482397 | None:intergenic | 30.0% | |
TGATATCTTGATAGATAACC+TGG | - | chr6_4:72482379-72482398 | None:intergenic | 30.0% | |
AGACTAAACATAAAAAGGGA+GGG | - | chr6_4:72482442-72482461 | None:intergenic | 30.0% | |
AAGACTAAACATAAAAAGGG+AGG | - | chr6_4:72482443-72482462 | None:intergenic | 30.0% | |
!! | TTTAGTCTTCGTTTTGTTGA+CGG | + | chr6_4:72482454-72482473 | Msa0995730:intron | 30.0% |
! | TAACACTTACAATTTTGCAG+GGG | - | chr6_4:72482552-72482571 | None:intergenic | 30.0% |
! | CATAACACTTACAATTTTGC+AGG | - | chr6_4:72482554-72482573 | None:intergenic | 30.0% |
! | TCAAAGGGGAATATGTTTTA+TGG | - | chr6_4:72482755-72482774 | None:intergenic | 30.0% |
ATCCAACAGTTATAGATCAA+TGG | - | chr6_4:72483044-72483063 | None:intergenic | 30.0% | |
CCCTTCTTTATCAATACTTA+AGG | + | chr6_4:72483082-72483101 | Msa0995730:intron | 30.0% | |
CACATTGGACAAGATATAAT+TGG | - | chr6_4:72483180-72483199 | None:intergenic | 30.0% | |
!! | CACCAGGTATAAATTTTGAT+AGG | - | chr6_4:72483624-72483643 | None:intergenic | 30.0% |
CTATCAAAATTTATACCTGG+TGG | + | chr6_4:72483622-72483641 | Msa0995730:intron | 30.0% | |
GCATGATCTATATCACAAAA+AGG | - | chr6_4:72483863-72483882 | None:intergenic | 30.0% | |
GCATGATCTATATCACAAAA+AGG | - | chr6_4:72483863-72483882 | None:intergenic | 30.0% | |
!!! | TAAAGTTTTGAAGGAAACCT+TGG | + | chr6_4:72484201-72484220 | Msa0995730:intron | 30.0% |
AATCATGATCTATATCACCA+AGG | - | chr6_4:72484221-72484240 | None:intergenic | 30.0% | |
!! | AGTACTTTTTATCAGGGTAT+AGG | + | chr6_4:72484491-72484510 | Msa0995730:intron | 30.0% |
TTAGCCAATAGGATGTATTT+CGG | + | chr6_4:72484602-72484621 | Msa0995730:CDS | 30.0% | |
AATTCCGAAATACATCCTAT+TGG | - | chr6_4:72484609-72484628 | None:intergenic | 30.0% | |
AATGTGATTAATGCTTGTGT+TGG | - | chr6_4:72484687-72484706 | None:intergenic | 30.0% | |
!! | CAAAACATGAGAGGTTTTAT+TGG | - | chr6_4:72484850-72484869 | None:intergenic | 30.0% |
! | TCCTTTACATCTCGTTATTT+TGG | + | chr6_4:72484972-72484991 | Msa0995730:three_prime_UTR | 30.0% |
TCCAAAATAACGAGATGTAA+AGG | - | chr6_4:72484976-72484995 | None:intergenic | 30.0% | |
ATTCAAAAAACTCGCGAATG+AGG | - | chr6_4:72479031-72479050 | None:intergenic | 35.0% | |
GTGATCCTTTATGCTATATG+CGG | - | chr6_4:72479120-72479139 | None:intergenic | 35.0% | |
GATAAATGGTAAAAGAAGCG+AGG | - | chr6_4:72479142-72479161 | None:intergenic | 35.0% | |
AGTTACCGTTAATTTCGAAG+CGG | - | chr6_4:72479166-72479185 | None:intergenic | 35.0% | |
TTACGTATTTAGCCTCTGTT+TGG | + | chr6_4:72479246-72479265 | Msa0995730:intron | 35.0% | |
TAAGCTGTTTATCCAAACAG+AGG | - | chr6_4:72479261-72479280 | None:intergenic | 35.0% | |
GATAAACAGCTTATTTCGCA+TGG | + | chr6_4:72479268-72479287 | Msa0995730:intron | 35.0% | |
AGGAGCTTATGAAAATAAGC+TGG | + | chr6_4:72479407-72479426 | Msa0995730:intron | 35.0% | |
TCAAATAAGCTAATCCAGAC+AGG | + | chr6_4:72479511-72479530 | Msa0995730:intron | 35.0% | |
TAACTGATAAGCTGACTGAT+AGG | + | chr6_4:72479572-72479591 | Msa0995730:intron | 35.0% | |
AACTGATAAGCTGACTGATA+GGG | + | chr6_4:72479573-72479592 | Msa0995730:intron | 35.0% | |
! | ACCAAACTGCTATCTTTTGA+CGG | - | chr6_4:72479924-72479943 | None:intergenic | 35.0% |
! | TTGGGTGTAGCTTAATTTTG+GGG | - | chr6_4:72480102-72480121 | None:intergenic | 35.0% |
! | GTTGGGTGTAGCTTAATTTT+GGG | - | chr6_4:72480103-72480122 | None:intergenic | 35.0% |
! | AGTTGGGTGTAGCTTAATTT+TGG | - | chr6_4:72480104-72480123 | None:intergenic | 35.0% |
GTAAAACTTAGGCACATTGA+AGG | - | chr6_4:72480266-72480285 | None:intergenic | 35.0% | |
ATGTCCTGACTTTAAACACA+CGG | - | chr6_4:72480306-72480325 | None:intergenic | 35.0% | |
AATATATTGCGTAACAGGAG+AGG | - | chr6_4:72480342-72480361 | None:intergenic | 35.0% | |
CTCTGAATATATTGCGTAAC+AGG | - | chr6_4:72480347-72480366 | None:intergenic | 35.0% | |
CTGTTACGCAATATATTCAG+AGG | + | chr6_4:72480345-72480364 | Msa0995730:CDS | 35.0% | |
! | GCTCAAATTAACGGATAAGT+GGG | + | chr6_4:72480455-72480474 | Msa0995730:intron | 35.0% |
!! | TTTGAGCATCGATCATTCAT+AGG | + | chr6_4:72480540-72480559 | Msa0995730:intron | 35.0% |
!! | TTGAGCATCGATCATTCATA+GGG | + | chr6_4:72480541-72480560 | Msa0995730:intron | 35.0% |
TCATAGGGTTATGACTATGA+CGG | + | chr6_4:72480556-72480575 | Msa0995730:intron | 35.0% | |
TTCCAATAATGTAATGCTGG+AGG | - | chr6_4:72480677-72480696 | None:intergenic | 35.0% | |
TAGGACAATCATGAACAATG+GGG | - | chr6_4:72480844-72480863 | None:intergenic | 35.0% | |
! | GAAAAGAGCACAAACCAAAT+AGG | - | chr6_4:72480863-72480882 | None:intergenic | 35.0% |
!!! | GTCCTCCTTTTTTATGTTCT+TGG | + | chr6_4:72481017-72481036 | Msa0995730:intron | 35.0% |
GCCTACCAAGAACATAAAAA+AGG | - | chr6_4:72481025-72481044 | None:intergenic | 35.0% | |
AGCTTATTCATTGAAATGGG+CGG | + | chr6_4:72481052-72481071 | Msa0995730:intron | 35.0% | |
AATCTACAGCTTAACATGGA+AGG | + | chr6_4:72481101-72481120 | Msa0995730:intron | 35.0% | |
ATCTACAGCTTAACATGGAA+GGG | + | chr6_4:72481102-72481121 | Msa0995730:intron | 35.0% | |
ACAAATATATAGCGTGCTTC+AGG | - | chr6_4:72481185-72481204 | None:intergenic | 35.0% | |
GTAATGTACAAATCCAACCA+AGG | - | chr6_4:72481297-72481316 | None:intergenic | 35.0% | |
!!! | TGTACATTACCGCTTTGTTT+TGG | + | chr6_4:72481307-72481326 | Msa0995730:CDS | 35.0% |
AAGGACACAACTTATAGTCT+AGG | + | chr6_4:72481504-72481523 | Msa0995730:intron | 35.0% | |
TGTCATGCTAACTGTTCAAA+GGG | + | chr6_4:72481702-72481721 | Msa0995730:CDS | 35.0% | |
GGCTTATACAAAAGCAGTTA+GGG | - | chr6_4:72481869-72481888 | None:intergenic | 35.0% | |
AGGCTTATACAAAAGCAGTT+AGG | - | chr6_4:72481870-72481889 | None:intergenic | 35.0% | |
!! | ATATTTCTCTGCTTTTGAGC+AGG | + | chr6_4:72481931-72481950 | Msa0995730:intron | 35.0% |
TGTAGACATATATGTGGTTC+AGG | - | chr6_4:72481961-72481980 | None:intergenic | 35.0% | |
GACTAAACATAAAAAGGGAG+GGG | - | chr6_4:72482441-72482460 | None:intergenic | 35.0% | |
!! | ACCTTCTAAAGTTGATCCAA+TGG | + | chr6_4:72482518-72482537 | Msa0995730:CDS | 35.0% |
ACCATTGGATCAACTTTAGA+AGG | - | chr6_4:72482522-72482541 | None:intergenic | 35.0% | |
! | AACACTTACAATTTTGCAGG+GGG | - | chr6_4:72482551-72482570 | None:intergenic | 35.0% |
CAGACCCGAACTAATAAAAA+AGG | - | chr6_4:72482943-72482962 | None:intergenic | 35.0% | |
CAACCAAAACCATGATATCT+TGG | + | chr6_4:72482978-72482997 | Msa0995730:intron | 35.0% | |
! | CATCCAAGATATCATGGTTT+TGG | - | chr6_4:72482984-72483003 | None:intergenic | 35.0% |
CTCCATTGATCTATAACTGT+TGG | + | chr6_4:72483039-72483058 | Msa0995730:intron | 35.0% | |
TAATCATCAGAGAGAAATCG+CGG | - | chr6_4:72483152-72483171 | None:intergenic | 35.0% | |
AACCATCATCATGTTCACAT+TGG | - | chr6_4:72483195-72483214 | None:intergenic | 35.0% | |
!!! | TTCTACTTTTTTGTGGGATG+AGG | + | chr6_4:72483239-72483258 | Msa0995730:intron | 35.0% |
TGTTACACACAACTGTTTGT+AGG | + | chr6_4:72483292-72483311 | Msa0995730:intron | 35.0% | |
TGATAGACTTAAATTGCGCA+TGG | - | chr6_4:72483549-72483568 | None:intergenic | 35.0% | |
GTCTATCATATCTACAGAGA+AGG | + | chr6_4:72483561-72483580 | Msa0995730:intron | 35.0% | |
! | AAGGTGTTTCTTGTGTAGAT+AGG | + | chr6_4:72483580-72483599 | Msa0995730:intron | 35.0% |
TGTTTCTTGTGTAGATAGGA+TGG | + | chr6_4:72483584-72483603 | Msa0995730:intron | 35.0% | |
! | CAATTTTCACAACCTCTCAT+AGG | + | chr6_4:72483710-72483729 | Msa0995730:intron | 35.0% |
! | CAATTTTCACAACCTCTCAT+AGG | + | chr6_4:72483710-72483729 | Msa0995730:intron | 35.0% |
! | CAATTTTCACAACCTCTCAT+AGG | + | chr6_4:72483710-72483729 | Msa0995730:intron | 35.0% |
TTTATCAGGGTATAGGATTG+AGG | + | chr6_4:72484498-72484517 | Msa0995730:intron | 35.0% | |
TTATCAGGGTATAGGATTGA+GGG | + | chr6_4:72484499-72484518 | Msa0995730:intron | 35.0% | |
TTAGCTTAAGAGCTCTATTC+AGG | - | chr6_4:72484632-72484651 | None:intergenic | 35.0% | |
! | AGGAAGAATGCTCAACTTTT+TGG | + | chr6_4:72484894-72484913 | Msa0995730:three_prime_UTR | 35.0% |
GGATTTATCTCAAATTCCCA+AGG | + | chr6_4:72484993-72485012 | Msa0995730:three_prime_UTR | 35.0% | |
TAACCTTCTCTCTGTTACGA+CGG | - | chr6_4:72478969-72478988 | None:intergenic | 40.0% | |
CTTTGCGAGAAGCTGAAAAA+CGG | - | chr6_4:72479069-72479088 | None:intergenic | 40.0% | |
CAAAGCCGCATATAGCATAA+AGG | + | chr6_4:72479112-72479131 | Msa0995730:CDS | 40.0% | |
AATTTCGAAGCGGCGATAAA+TGG | - | chr6_4:72479156-72479175 | None:intergenic | 40.0% | |
TATCGCCGCTTCGAAATTAA+CGG | + | chr6_4:72479158-72479177 | Msa0995730:CDS | 40.0% | |
ACTGATAAGCTGACTGATAG+GGG | + | chr6_4:72479574-72479593 | Msa0995730:intron | 40.0% | |
TCCGTCAAAAGATAGCAGTT+TGG | + | chr6_4:72479920-72479939 | Msa0995730:intron | 40.0% | |
! | TGGGTGTAGCTTAATTTTGG+GGG | - | chr6_4:72480101-72480120 | None:intergenic | 40.0% |
! | GTGTGTTTAAAGTCAGGACA+TGG | + | chr6_4:72480305-72480324 | Msa0995730:CDS | 40.0% |
! | GGCTCAAATTAACGGATAAG+TGG | + | chr6_4:72480454-72480473 | Msa0995730:intron | 40.0% |
AATACCCCTTGGTACAGTTT+AGG | + | chr6_4:72480596-72480615 | Msa0995730:intron | 40.0% | |
ATACCCCTTGGTACAGTTTA+GGG | + | chr6_4:72480597-72480616 | Msa0995730:intron | 40.0% | |
TTACCCCTAAACTGTACCAA+GGG | - | chr6_4:72480604-72480623 | None:intergenic | 40.0% | |
TTTACCCCTAAACTGTACCA+AGG | - | chr6_4:72480605-72480624 | None:intergenic | 40.0% | |
AGCCTCCAGCATTACATTAT+TGG | + | chr6_4:72480672-72480691 | Msa0995730:intron | 40.0% | |
! | CGTTCTGTTGTCTGAGATTT+AGG | + | chr6_4:72480709-72480728 | Msa0995730:intron | 40.0% |
! | GTCTGAGATTTAGGCACAAT+TGG | + | chr6_4:72480718-72480737 | Msa0995730:intron | 40.0% |
GCTTATTCATTGAAATGGGC+GGG | + | chr6_4:72481053-72481072 | Msa0995730:intron | 40.0% | |
AAAGGTGAAGCGTAGAGAAA+TGG | + | chr6_4:72481154-72481173 | Msa0995730:CDS | 40.0% | |
ACGCTATATATTTGTGCACG+AGG | + | chr6_4:72481190-72481209 | Msa0995730:CDS | 40.0% | |
! | TCTTCTTGACGACTAGTTGA+AGG | - | chr6_4:72481266-72481285 | None:intergenic | 40.0% |
ACTAGTCGTCAAGAAGATAG+TGG | + | chr6_4:72481269-72481288 | Msa0995730:CDS | 40.0% | |
CCTCTTCTTCCAAAACAAAG+CGG | - | chr6_4:72481319-72481338 | None:intergenic | 40.0% | |
AGGATTGGGAAAGCTTCTAA+TGG | + | chr6_4:72481391-72481410 | Msa0995730:CDS | 40.0% | |
TATTGAGCTTATCGCCCAAA+AGG | + | chr6_4:72481418-72481437 | Msa0995730:CDS | 40.0% | |
CTGTCATGCTAACTGTTCAA+AGG | + | chr6_4:72481701-72481720 | Msa0995730:CDS | 40.0% | |
CAAATAACCACGTGATGCTA+GGG | - | chr6_4:72482071-72482090 | None:intergenic | 40.0% | |
TAACAGTGATTGACATGTCG+AGG | - | chr6_4:72482101-72482120 | None:intergenic | 40.0% | |
! | ATCAACTTTAGAAGGTGACG+TGG | - | chr6_4:72482514-72482533 | None:intergenic | 40.0% |
! | ACACTTACAATTTTGCAGGG+GGG | - | chr6_4:72482550-72482569 | None:intergenic | 40.0% |
TTTCCGTTCTCATATGCAGA+TGG | + | chr6_4:72482596-72482615 | Msa0995730:intron | 40.0% | |
TCTCCATCTGCATATGAGAA+CGG | - | chr6_4:72482602-72482621 | None:intergenic | 40.0% | |
TCAACACAGATAGCTCAAAG+GGG | - | chr6_4:72482769-72482788 | None:intergenic | 40.0% | |
GTCAACACAGATAGCTCAAA+GGG | - | chr6_4:72482770-72482789 | None:intergenic | 40.0% | |
AAGAAGGGTCAACAAGAATG+CGG | - | chr6_4:72483070-72483089 | None:intergenic | 40.0% | |
GAAAGATAGTAGAGTTTGCG+AGG | - | chr6_4:72483115-72483134 | None:intergenic | 40.0% | |
GTCCAATGTGAACATGATGA+TGG | + | chr6_4:72483190-72483209 | Msa0995730:intron | 40.0% | |
CAGTTGTGTGTAACAATCAG+AGG | - | chr6_4:72483287-72483306 | None:intergenic | 40.0% | |
ATAGATATCACACCAGATCG+TGG | + | chr6_4:72483385-72483404 | Msa0995730:intron | 40.0% | |
TAGACTTAAATTGCGCATGG+AGG | - | chr6_4:72483546-72483565 | None:intergenic | 40.0% | |
! | TCATGCTCAGTTGATTGGTT+GGG | - | chr6_4:72483771-72483790 | None:intergenic | 40.0% |
! | CAATTTTCACAACCTCTCGT+AGG | + | chr6_4:72484072-72484091 | Msa0995730:intron | 40.0% |
ACATGAGGAAGTTAGCCAAT+AGG | + | chr6_4:72484591-72484610 | Msa0995730:CDS | 40.0% | |
AACCGATGAATGAGAGATAG+CGG | - | chr6_4:72484823-72484842 | None:intergenic | 40.0% | |
!!! | ACCTCTCATGTTTTGTTTGC+AGG | + | chr6_4:72484855-72484874 | Msa0995730:intron | 40.0% |
TCCTGCAAACAAAACATGAG+AGG | - | chr6_4:72484859-72484878 | None:intergenic | 40.0% | |
TTGCAGGATAGTGAATGAGT+TGG | + | chr6_4:72484871-72484890 | Msa0995730:intron | 40.0% | |
TCCTTTGTCACATTACTGAG+TGG | + | chr6_4:72484931-72484950 | Msa0995730:three_prime_UTR | 40.0% | |
! | AAGGAAAAGTGCAAGACACA+GGG | - | chr6_4:72484957-72484976 | None:intergenic | 40.0% |
! | AAAGGAAAAGTGCAAGACAC+AGG | - | chr6_4:72484958-72484977 | None:intergenic | 40.0% |
!! | TGTGAGTTGCATTGGTTCCA+CGG | - | chr6_4:72478940-72478959 | None:intergenic | 45.0% |
CGCGAATGAGGAAAGTTTAG+AGG | - | chr6_4:72479019-72479038 | None:intergenic | 45.0% | |
GAGAAGCTGAAAAACGGAAC+GGG | - | chr6_4:72479063-72479082 | None:intergenic | 45.0% | |
CGAGAAGCTGAAAAACGGAA+CGG | - | chr6_4:72479064-72479083 | None:intergenic | 45.0% | |
ACAAAGTCTTAGGTCCTGTC+TGG | - | chr6_4:72479528-72479547 | None:intergenic | 45.0% | |
CTGATAAGCTGACTGATAGG+GGG | + | chr6_4:72479575-72479594 | Msa0995730:intron | 45.0% | |
!! | TCGTCATTTTAGGCTCTGGT+TGG | - | chr6_4:72479951-72479970 | None:intergenic | 45.0% |
!! | ACACTCGTCATTTTAGGCTC+TGG | - | chr6_4:72479955-72479974 | None:intergenic | 45.0% |
TTTAAACACACGGAGAGACC+TGG | - | chr6_4:72480296-72480315 | None:intergenic | 45.0% | |
! | CTCTCCGTGTGTTTAAAGTC+AGG | + | chr6_4:72480299-72480318 | Msa0995730:CDS | 45.0% |
ATTGCGTAACAGGAGAGGAA+AGG | - | chr6_4:72480337-72480356 | None:intergenic | 45.0% | |
TACCCCTTGGTACAGTTTAG+GGG | + | chr6_4:72480598-72480617 | Msa0995730:intron | 45.0% | |
TACCCCTAAACTGTACCAAG+GGG | - | chr6_4:72480603-72480622 | None:intergenic | 45.0% | |
ACGCAGACAAGAACAGACAA+TGG | - | chr6_4:72480751-72480770 | None:intergenic | 45.0% | |
CTCGTGACTCATGACTATAC+AGG | - | chr6_4:72480804-72480823 | None:intergenic | 45.0% | |
CTTAACATGGAAGGGCCATA+TGG | + | chr6_4:72481110-72481129 | Msa0995730:CDS | 45.0% | |
TCTTGCCACTCAGATCCATA+TGG | - | chr6_4:72481128-72481147 | None:intergenic | 45.0% | |
ATATGGATCTGAGTGGCAAG+AGG | + | chr6_4:72481127-72481146 | Msa0995730:CDS | 45.0% | |
TGAGTGGCAAGAGGAAGAAA+AGG | + | chr6_4:72481136-72481155 | Msa0995730:CDS | 45.0% | |
!! | GATGACAACAGTGTTGACTG+AGG | + | chr6_4:72481235-72481254 | Msa0995730:CDS | 45.0% |
! | TCAAGAAGATAGTGGTCCCT+TGG | + | chr6_4:72481277-72481296 | Msa0995730:CDS | 45.0% |
!!! | CCGCTTTGTTTTGGAAGAAG+AGG | + | chr6_4:72481316-72481335 | Msa0995730:CDS | 45.0% |
ATGTTTACCCTAGCATCACG+TGG | + | chr6_4:72482061-72482080 | Msa0995730:intron | 45.0% | |
GCAAATAACCACGTGATGCT+AGG | - | chr6_4:72482072-72482091 | None:intergenic | 45.0% | |
CAATCTAATGGTGCAGTGAG+TGG | - | chr6_4:72482686-72482705 | None:intergenic | 45.0% | |
GGTCAACACAGATAGCTCAA+AGG | - | chr6_4:72482771-72482790 | None:intergenic | 45.0% | |
! | GCTATCTGTGTTGACCATCT+AGG | + | chr6_4:72482775-72482794 | Msa0995730:intron | 45.0% |
AAAACAGTTACGCCACGATC+TGG | - | chr6_4:72483400-72483419 | None:intergenic | 45.0% | |
AAAGAAAAGTCTGGGGACTC+AGG | + | chr6_4:72483453-72483472 | Msa0995730:intron | 45.0% | |
AGTCGAGATAGAATTCCACC+AGG | - | chr6_4:72483640-72483659 | None:intergenic | 45.0% | |
TCACAACCTCTCATAGGACA+CGG | + | chr6_4:72483716-72483735 | Msa0995730:intron | 45.0% | |
! | CATGCTCAGTTGATTGGTTG+GGG | - | chr6_4:72483770-72483789 | None:intergenic | 45.0% |
CTCATGCTCAGTTGATTGGT+TGG | - | chr6_4:72483772-72483791 | None:intergenic | 45.0% | |
CAACCAATCAACTGAGCATG+AGG | + | chr6_4:72483770-72483789 | Msa0995730:CDS | 45.0% | |
CCTCTCATAGGACATGACTT+CGG | + | chr6_4:72483904-72483923 | Msa0995730:intron | 45.0% | |
CTCTCATAGGACATGACTTC+GGG | + | chr6_4:72483905-72483924 | Msa0995730:intron | 45.0% | |
TCACAACCTCTCATAGGACA+CGG | + | chr6_4:72483716-72483735 | Msa0995730:intron | 45.0% | |
!!! | TCTGGCGTTGATACTTTTCC+AGG | + | chr6_4:72483741-72483760 | Msa0995730:CDS | 45.0% |
CAATGCTAACCTTTCGGCAT+CGG | - | chr6_4:72484463-72484482 | None:intergenic | 45.0% | |
GGATTGAAACAACGGACATG+AGG | + | chr6_4:72484576-72484595 | Msa0995730:intron | 45.0% | |
GCTAATGATGTCGTTGCTGA+AGG | + | chr6_4:72484647-72484666 | Msa0995730:three_prime_UTR | 45.0% | |
CACCGCTATCTCTCATTCAT+CGG | + | chr6_4:72484818-72484837 | Msa0995730:intron | 45.0% | |
! | CAGGATAGTGAATGAGTTGG+AGG | + | chr6_4:72484874-72484893 | Msa0995730:intron | 45.0% |
GCCACTCAGTAATGTGACAA+AGG | - | chr6_4:72484935-72484954 | None:intergenic | 45.0% | |
!!! | CAGTTTTAGCTCGAACTTGC+AGG | - | chr6_4:72485076-72485095 | None:intergenic | 45.0% |
GGCGTTGTTGTGAGTTGCAT+TGG | - | chr6_4:72478948-72478967 | None:intergenic | 50.0% | |
AGACGCTTGAGCATAGTGAG+TGG | + | chr6_4:72480479-72480498 | Msa0995730:intron | 50.0% | |
! | GATCTGAAAGTGCAACGTCG+CGG | + | chr6_4:72480501-72480520 | Msa0995730:intron | 50.0% |
GACTATGACGGTTGCAAGTG+TGG | + | chr6_4:72480568-72480587 | Msa0995730:intron | 50.0% | |
TTTATCACGAGGGCGAGCAT+TGG | + | chr6_4:72480953-72480972 | Msa0995730:intron | 50.0% | |
AAGGGCCATATGGATCTGAG+TGG | + | chr6_4:72481120-72481139 | Msa0995730:CDS | 50.0% | |
! | GAAGATAGTGGTCCCTTGGT+TGG | + | chr6_4:72481281-72481300 | Msa0995730:CDS | 50.0% |
! | CTCAGTTGATTGGTTGGGGT+CGG | - | chr6_4:72483766-72483785 | None:intergenic | 50.0% |
CAGCCTCATGCTCAGTTGAT+TGG | - | chr6_4:72483776-72483795 | None:intergenic | 50.0% | |
CCGAAGTCATGTCCTATGAG+AGG | - | chr6_4:72483907-72483926 | None:intergenic | 50.0% | |
TCGTCCTCAGTTGGTTGGAT+GGG | - | chr6_4:72483953-72483972 | None:intergenic | 50.0% | |
ATTTCAGCCTCGTCCTCAGT+TGG | - | chr6_4:72483962-72483981 | None:intergenic | 50.0% | |
TCACAACCTCTCGTAGGACA+TGG | + | chr6_4:72484078-72484097 | Msa0995730:intron | 50.0% | |
AGGAATTTCAGCCTCGTCCT+CGG | - | chr6_4:72484146-72484165 | None:intergenic | 50.0% | |
ATTTCAGCCTCGTCGTCAGT+TGG | - | chr6_4:72484318-72484337 | None:intergenic | 50.0% | |
AGCTCGAACTTGCAGGAGTT+AGG | - | chr6_4:72485069-72485088 | None:intergenic | 50.0% | |
AGCGTCTCCGAGTTCATTGC+TGG | - | chr6_4:72478908-72478927 | None:intergenic | 55.0% | |
!! | CATTGGTTCCACGGTCACGT+TGG | - | chr6_4:72478931-72478950 | None:intergenic | 55.0% |
ACGCCGTCGTAACAGAGAGA+AGG | + | chr6_4:72478963-72478982 | Msa0995730:CDS | 55.0% | |
GTGTGGCAGCAAATACCCCT+TGG | + | chr6_4:72480585-72480604 | Msa0995730:intron | 55.0% | |
AATCCTTTCCCCTGGACACG+AGG | - | chr6_4:72481377-72481396 | None:intergenic | 55.0% | |
TCGTGTCCAGGGGAAAGGAT+TGG | + | chr6_4:72481376-72481395 | Msa0995730:CDS | 55.0% | |
CGTGTCCAGGGGAAAGGATT+GGG | + | chr6_4:72481377-72481396 | Msa0995730:CDS | 55.0% | |
GCTTTCCCAATCCTTTCCCC+TGG | - | chr6_4:72481385-72481404 | None:intergenic | 55.0% | |
! | TGCAGGGGGGTACATACCAT+TGG | - | chr6_4:72482537-72482556 | None:intergenic | 55.0% |
CAGAAGCCGTGTCCTATGAG+AGG | - | chr6_4:72483725-72483744 | None:intergenic | 55.0% | |
CTCTCATAGGACACGGCTTC+TGG | + | chr6_4:72483723-72483742 | Msa0995730:intron | 55.0% | |
CTCAGTTGGTTGGATGGGGT+CGG | - | chr6_4:72483948-72483967 | None:intergenic | 55.0% | |
CGTCCTCAGTTGGTTGGATG+GGG | - | chr6_4:72483952-72483971 | None:intergenic | 55.0% | |
CTCGTCCTCAGTTGGTTGGA+TGG | - | chr6_4:72483954-72483973 | None:intergenic | 55.0% | |
CATCCAACCAACTGAGGACG+AGG | + | chr6_4:72483952-72483971 | Msa0995730:CDS | 55.0% | |
CAGAAGCCATGTCCTACGAG+AGG | - | chr6_4:72484087-72484106 | None:intergenic | 55.0% | |
CTCTCGTAGGACATGGCTTC+TGG | + | chr6_4:72484085-72484104 | Msa0995730:intron | 55.0% | |
! | CTCGGTTGGTTGGATGGGTT+CGG | - | chr6_4:72484128-72484147 | None:intergenic | 55.0% |
! | TCGTCCTCGGTTGGTTGGAT+GGG | - | chr6_4:72484133-72484152 | None:intergenic | 55.0% |
ATTTCAGCCTCGTCCTCGGT+TGG | - | chr6_4:72484142-72484161 | None:intergenic | 55.0% | |
CAGAAGCCGTGTCCTATGAG+AGG | - | chr6_4:72483725-72483744 | None:intergenic | 55.0% | |
CTCTCATAGGACACGGCTTC+TGG | + | chr6_4:72483723-72483742 | Msa0995730:intron | 55.0% | |
!! | TCGTCGTCAGTTGGTTCGTC+GGG | - | chr6_4:72484309-72484328 | None:intergenic | 55.0% |
!! | CTCGTCGTCAGTTGGTTCGT+CGG | - | chr6_4:72484310-72484329 | None:intergenic | 55.0% |
ACGTTGATGCCGATGCCGAA+AGG | + | chr6_4:72484451-72484470 | Msa0995730:CDS | 55.0% | |
! | GTGCAACGTCGCGGATTGAG+AGG | + | chr6_4:72480510-72480529 | Msa0995730:intron | 60.0% |
! | GTTGATTGGTTGGGGTCGGC+AGG | - | chr6_4:72483762-72483781 | None:intergenic | 60.0% |
CGACCCCATCCAACCAACTG+AGG | + | chr6_4:72483946-72483965 | Msa0995730:CDS | 60.0% | |
CAGCCTCGTCCTCAGTTGGT+TGG | - | chr6_4:72483958-72483977 | None:intergenic | 60.0% | |
! | GTTGGTTGGATGGGTTCGGC+AGG | - | chr6_4:72484124-72484143 | None:intergenic | 60.0% |
CGAACCCATCCAACCAACCG+AGG | + | chr6_4:72484126-72484145 | Msa0995730:CDS | 60.0% | |
! | CTCGTCCTCGGTTGGTTGGA+TGG | - | chr6_4:72484134-72484153 | None:intergenic | 60.0% |
CATCCAACCAACCGAGGACG+AGG | + | chr6_4:72484132-72484151 | Msa0995730:CDS | 60.0% | |
!! | CGTCGTCAGTTGGTTCGTCG+GGG | - | chr6_4:72484308-72484327 | None:intergenic | 60.0% |
CGACGAACCAACTGACGACG+AGG | + | chr6_4:72484308-72484327 | Msa0995730:CDS | 60.0% | |
GAGACGCTCCAACGTGACCG+TGG | + | chr6_4:72478920-72478939 | Msa0995730:CDS | 65.0% | |
ACAGCTCGAGCCTCGTGTCC+AGG | + | chr6_4:72481364-72481383 | Msa0995730:CDS | 65.0% | |
CAGCTCGAGCCTCGTGTCCA+GGG | + | chr6_4:72481365-72481384 | Msa0995730:CDS | 65.0% | |
AGCTCGAGCCTCGTGTCCAG+GGG | + | chr6_4:72481366-72481385 | Msa0995730:CDS | 65.0% | |
GAGCCTCGTGTCCAGGGGAA+AGG | + | chr6_4:72481371-72481390 | Msa0995730:CDS | 65.0% | |
GTTGGTTGGATGGGGTCGGC+AGG | - | chr6_4:72483944-72483963 | None:intergenic | 65.0% | |
CAGCCTCGTCCTCGGTTGGT+TGG | - | chr6_4:72484138-72484157 | None:intergenic | 65.0% | |
!! | GTTGGTTCGTCGGGGTCACC+TGG | - | chr6_4:72484300-72484319 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 72478899 | 72485154 | 72478899 | ID=Msa0995730;Name=Msa0995730 |
chr6_4 | mRNA | 72478899 | 72485154 | 72478899 | ID=Msa0995730-mRNA-1;Parent=Msa0995730;Name=Msa0995730-mRNA-1;_AED=0.15;_eAED=0.15;_QI=12|1|1|1|0.92|0.85|14|309|388 |
chr6_4 | exon | 72478899 | 72479000 | 72478899 | ID=Msa0995730-mRNA-1:exon:13500;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72479077 | 72479179 | 72479077 | ID=Msa0995730-mRNA-1:exon:13501;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72480297 | 72480376 | 72480297 | ID=Msa0995730-mRNA-1:exon:13502;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72481110 | 72481439 | 72481110 | ID=Msa0995730-mRNA-1:exon:13503;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72481688 | 72481764 | 72481688 | ID=Msa0995730-mRNA-1:exon:13504;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72482497 | 72482539 | 72482497 | ID=Msa0995730-mRNA-1:exon:13505;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72482615 | 72482677 | 72482615 | ID=Msa0995730-mRNA-1:exon:13506;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72483732 | 72483803 | 72483732 | ID=Msa0995730-mRNA-1:exon:13507;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72483914 | 72483985 | 72483914 | ID=Msa0995730-mRNA-1:exon:13508;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72484094 | 72484165 | 72484094 | ID=Msa0995730-mRNA-1:exon:13509;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72484270 | 72484341 | 72484270 | ID=Msa0995730-mRNA-1:exon:13510;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72484441 | 72484472 | 72484441 | ID=Msa0995730-mRNA-1:exon:13511;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72484577 | 72484668 | 72484577 | ID=Msa0995730-mRNA-1:exon:13512;Parent=Msa0995730-mRNA-1 |
chr6_4 | exon | 72484877 | 72485154 | 72484877 | ID=Msa0995730-mRNA-1:exon:13513;Parent=Msa0995730-mRNA-1 |
chr6_4 | five_prime_UTR | 72478899 | 72478910 | 72478899 | ID=Msa0995730-mRNA-1:five_prime_utr;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72478911 | 72479000 | 72478911 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72479077 | 72479179 | 72479077 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72480297 | 72480376 | 72480297 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72481110 | 72481439 | 72481110 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72481688 | 72481764 | 72481688 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72482497 | 72482539 | 72482497 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72482615 | 72482677 | 72482615 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72483732 | 72483803 | 72483732 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72483914 | 72483985 | 72483914 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72484094 | 72484165 | 72484094 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72484270 | 72484341 | 72484270 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72484441 | 72484472 | 72484441 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | CDS | 72484577 | 72484637 | 72484577 | ID=Msa0995730-mRNA-1:cds;Parent=Msa0995730-mRNA-1 |
chr6_4 | three_prime_UTR | 72484638 | 72484668 | 72484638 | ID=Msa0995730-mRNA-1:three_prime_utr;Parent=Msa0995730-mRNA-1 |
chr6_4 | three_prime_UTR | 72484877 | 72485154 | 72484877 | ID=Msa0995730-mRNA-1:three_prime_utr;Parent=Msa0995730-mRNA-1 |
Gene Sequence |
Protein sequence |