AlfalfaGEDB | Msa0995870

M. sativa cultivar zhongmu-4 / Msa0995870

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0995870	KEH26803.1	72.524	313	28	7	469	740	878	1173	9.29e-136	440
Msa0995870	KEH26803.1	80.085	472	21	2	70	468	140	611	0.0	737

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0995870	sp\|Q54BC9\|DYRK2_DICDI	38.983	118	71	1	470	586	585	702	5.01e-19	95.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0995870	A0A396HGR0	74.699	332	24	5	469	740	878	1209	7.94e-152	483
Msa0995870	A0A396HGR0	80.085	472	21	2	70	468	140	611	0.0	737

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0995870	MtrunA17_Chr6g0480541	80.085	472	21	2	70	468	140	611	0.0	737
Msa0995870	MtrunA17_Chr6g0480541	74.699	332	24	5	469	740	878	1209	1.53e-155	483
Msa0995870	MtrunA17_Chr6g0480481	60.000	195	36	6	461	614	6	199	5.58e-64	212
Msa0995870	MtrunA17_Chr5g0437131	79.231	130	27	0	469	598	383	512	1.84e-63	225
Msa0995870	MtrunA17_Chr5g0437131	52.113	142	52	1	597	738	587	712	1.06e-40	159
Msa0995870	MtrunA17_Chr6g0480291	91.765	85	6	1	656	740	1	84	4.07e-46	159
Msa0995870	MtrunA17_Chr6g0480471	87.671	73	5	1	613	681	3	75	1.40e-36	131
Msa0995870	MtrunA17_Chr6g0480191	97.619	42	1	0	699	740	1	42	3.71e-22	89.7
Msa0995870	MtrunA17_Chr6g0480331	90.244	41	4	0	678	718	2	42	4.96e-19	81.3
Msa0995870	MtrunA17_Chr8g0369241	44.000	100	55	1	488	586	138	237	3.29e-18	89.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0995870	AT1G73460.2	61.094	329	125	3	140	468	243	568	2.34e-117	381
Msa0995870	AT1G73460.2	61.145	332	69	10	469	740	838	1169	2.90e-111	364
Msa0995870	AT1G73460.1	61.094	329	125	3	140	468	243	568	2.34e-117	381
Msa0995870	AT1G73460.1	61.145	332	69	10	469	740	838	1169	2.90e-111	364
Msa0995870	AT1G73450.1	59.574	329	126	4	140	468	242	563	4.26e-116	377
Msa0995870	AT1G73450.1	61.145	332	69	10	469	740	821	1152	2.00e-111	364
Msa0995870	AT3G17750.1	52.073	386	180	3	83	468	189	569	8.68e-110	360
Msa0995870	AT3G17750.1	93.023	129	9	0	469	597	807	935	2.40e-75	265
Msa0995870	AT3G17750.1	74.675	154	22	2	588	740	1001	1138	1.72e-64	233
Msa0995870	AT2G40120.1	76.154	130	31	0	469	598	241	370	1.87e-63	222

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Find 191 sgRNAs with CRISPR-Local

Find 556 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGATACAAGATCAG+AGG	0.652743	6_4:+73127293	None:intergenic
AAAAGAGCAGGTGGATGAAG+TGG	0.493164	6_4:-73128827	Msa0995870:CDS
AAAAGGGAAAACTGTCTTGA+TGG	0.399160	6_4:+73128948	None:intergenic
AAAATCATATGCTTTATGAG+AGG	0.623112	6_4:-73123850	Msa0995870:CDS
AAAATGTGATACTTGTCTCC+AGG	0.560708	6_4:+73126469	None:intergenic
AAAATTCAAGTTCATAGCTA+AGG	0.499756	6_4:+73130448	None:intergenic
AAACATCCACGCCTGTGTGC+AGG	0.551422	6_4:+73126578	None:intergenic
AAAGAGCAGGTGGATGAAGT+GGG	0.466670	6_4:-73128826	Msa0995870:CDS
AAAGTATGCTAGCAAAAGGA+CGG	0.592834	6_4:-73123895	Msa0995870:CDS
AAATTCAACAGAGAATCAGG+AGG	0.684821	6_4:-73125917	Msa0995870:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAACTTATAAGCACGAAAA+AGG	-	chr6_4:73123156-73123175	Msa0995870:three_prime_UTR	30.0%
TTTACTCTTTCCATAAGGAT+TGG	+	chr6_4:73123870-73123889	None:intergenic	30.0%
TCTGATTTACTCTTTCCATA+AGG	+	chr6_4:73123875-73123894	None:intergenic	30.0%
TATGTCTCAGAAAACTGATT+TGG	+	chr6_4:73124004-73124023	None:intergenic	30.0%
AATTTGTGATAGGGAAAACA+GGG	+	chr6_4:73124368-73124387	None:intergenic	30.0%
CCAAAGAAGAATTTGTGATA+GGG	+	chr6_4:73124377-73124396	None:intergenic	30.0%
ACCAAAGAAGAATTTGTGAT+AGG	+	chr6_4:73124378-73124397	None:intergenic	30.0%
CAATAATGTAAAAACTGAGG+AGG	-	chr6_4:73124568-73124587	Msa0995870:intron	30.0%
TTGTGCAAAACAAAGAATCT+AGG	-	chr6_4:73124673-73124692	Msa0995870:intron	30.0%
TTCGTCAATTAATGAGAACT+TGG	-	chr6_4:73124730-73124749	Msa0995870:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	73122905	73130884	73122905	ID=Msa0995870;Name=Msa0995870
chr6_4	mRNA	73122905	73130884	73122905	ID=Msa0995870-mRNA-1;Parent=Msa0995870;Name=Msa0995870-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0\|0.2\|0.36\|0.81\|1\|1\|11\|345\|740
chr6_4	exon	73122905	73123438	73122905	ID=Msa0995870-mRNA-1:exon:13600;Parent=Msa0995870-mRNA-1
chr6_4	exon	73123844	73123987	73123844	ID=Msa0995870-mRNA-1:exon:13599;Parent=Msa0995870-mRNA-1
chr6_4	exon	73124088	73124135	73124088	ID=Msa0995870-mRNA-1:exon:13598;Parent=Msa0995870-mRNA-1
chr6_4	exon	73124860	73124910	73124860	ID=Msa0995870-mRNA-1:exon:13597;Parent=Msa0995870-mRNA-1
chr6_4	exon	73125886	73125993	73125886	ID=Msa0995870-mRNA-1:exon:13596;Parent=Msa0995870-mRNA-1
chr6_4	exon	73126441	73126720	73126441	ID=Msa0995870-mRNA-1:exon:13595;Parent=Msa0995870-mRNA-1
chr6_4	exon	73126814	73127375	73126814	ID=Msa0995870-mRNA-1:exon:13594;Parent=Msa0995870-mRNA-1
chr6_4	exon	73128557	73129043	73128557	ID=Msa0995870-mRNA-1:exon:13593;Parent=Msa0995870-mRNA-1
chr6_4	exon	73129191	73129351	73129191	ID=Msa0995870-mRNA-1:exon:13592;Parent=Msa0995870-mRNA-1
chr6_4	exon	73130328	73130480	73130328	ID=Msa0995870-mRNA-1:exon:13591;Parent=Msa0995870-mRNA-1
chr6_4	exon	73130845	73130884	73130845	ID=Msa0995870-mRNA-1:exon:13590;Parent=Msa0995870-mRNA-1
chr6_4	CDS	73130845	73130884	73130845	ID=Msa0995870-mRNA-1:cds;Parent=Msa0995870-mRNA-1
chr6_4	CDS	73130328	73130480	73130328	ID=Msa0995870-mRNA-1:cds;Parent=Msa0995870-mRNA-1
chr6_4	CDS	73129191	73129351	73129191	ID=Msa0995870-mRNA-1:cds;Parent=Msa0995870-mRNA-1
chr6_4	CDS	73128557	73129043	73128557	ID=Msa0995870-mRNA-1:cds;Parent=Msa0995870-mRNA-1
chr6_4	CDS	73126814	73127375	73126814	ID=Msa0995870-mRNA-1:cds;Parent=Msa0995870-mRNA-1
chr6_4	CDS	73126441	73126720	73126441	ID=Msa0995870-mRNA-1:cds;Parent=Msa0995870-mRNA-1
chr6_4	CDS	73125886	73125993	73125886	ID=Msa0995870-mRNA-1:cds;Parent=Msa0995870-mRNA-1
chr6_4	CDS	73124860	73124910	73124860	ID=Msa0995870-mRNA-1:cds;Parent=Msa0995870-mRNA-1
chr6_4	CDS	73124088	73124135	73124088	ID=Msa0995870-mRNA-1:cds;Parent=Msa0995870-mRNA-1
chr6_4	CDS	73123844	73123987	73123844	ID=Msa0995870-mRNA-1:cds;Parent=Msa0995870-mRNA-1
chr6_4	CDS	73123250	73123438	73123250	ID=Msa0995870-mRNA-1:cds;Parent=Msa0995870-mRNA-1
chr6_4	three_prime_UTR	73122905	73123249	73122905	ID=Msa0995870-mRNA-1:three_prime_utr;Parent=Msa0995870-mRNA-1

Gene Sequence

>Msa0995870

ATGAGTAAGCACCTTCCTAAAGTTCAACAAGTAGAATACCAAAGGAGAAGCCTTAGCTATGAACTTGAATTTTTGTTTAACTATTACCTAAGGGTGCCAGAGACATCAGAAGCAATCGGGTCGAATGAAAGGTTGGCCACTTTCACACAACATCTGATAAATAGTGCCGGATCCAAGATGAATGGTGTTACAATACTCAAAAACTCAAATGGTCACGTGGAGCCTTACTCAACTGACGGTGGAAGCAAGGCTAGTAATACTTCAAATGCATCAATATCTCAGCAATCAAAAACTCAAATGAGTGAAGCCTTTGGCGCAGCCAACAATAATGTAAAAACTGAGGAGGAAAATAATAACTTGGCAGATAATGTCTTGTCAAGAGCTGACGAGAATGCAAATTCATGTAATGATGTATGTAAAGATTGTTCCATCAAGACAGTTTTCCCTTTTTCAAAGGGGGATGTGTCTACGAGCTATAGTAGCTCAACTTATTCAGAAAAAGTAGACGAAAAGAGAAAGCCAGAAATTGGTGATGCAAGGGCTTATATAAAAGAGCAGGTGGATGAAGTGGGGAGAGCTTTTAACTTGGGGAAGTTGCAAGGAAGTTCTGAACAGAATAACATTGGGGGGTTAAGTTTTCCTCTTGCGTTGGAGAAGCAGAAGGAAGAGTATCCAAGGCTTCCTCCTGTGAAAATTAAGTCAGAAGATAAGCCGTTGACTGTTAATTGGAGCGAGAAGTTTGAATCTGATGGATTGGCTGCTAAGCTGGCAAGTGCCGACAGCTCTTTACTTATTGGATCATATCTGGATGTACCTATTGGACAAGAAATTAAAAATGCAGGTATGAGGAAGGCTACAGGGGGCAGTTGGCTGTCCGTTAGTCAAGGAATATCAGAGGATACCTCTGATCTTGTATCAGGTTTTGCTACAGTTGGTGATGGATTGAGTGAATCTGTTGATTATCCAAATGAATATTGGGACTCTGATGAATATGATGACGACGACGATGTTGGGTACATGAGACAACCTATTGAGGATGAGGCCTGGTTTTTGGCGCACGAAATCGATTACCCTAGTGACAATGAAAAGGGGACTGGGCATGGAAGCGTTCCAGATCCACAGGAAAGAGGTCCTGCCAAAGAGGAGGATGACGATCAATCTTTCGCGGAAGAGGATTCTTATTTCTCTGGAGAGCAATATCTTCAAGCAAAGAATGTTGAGCCGGTCATAGGGTCAGATGATCCTATCGGTATAACGGTTACTAATATGTATGGAAGGGCTAATGGTAATGATTTAATGGCTCAATACGATGGAGAATTGATGGATGTAGAGGAACTGAATCTGATGCACGCGGAGCCTGTCTGGCAGGGCTTTGTCCCTCATAGTGGAAGATTGATACTTTTAACTGGCTTTGAAGAGGACAAGAATTTTCATGTTGTTTTAAATTCTGTAATAGCTGGTCGCTATCATGTCACCGAGTATCTGGGATCTGCTGCATTTAGTAAAGCTATACAAGCTCATGACCTGCACACAGGCGTGGATGTTTGTATTAAAATTATAAAGAACGACAAGGATTTCTTTGATCAAAGCCTTGATGAGATCAAACTCCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTTTGCGGTTATATGATTATTTCTATTATAGAGAACATTTGTTAATAGTATGTGAGCTACTCAAAGCCAACTTATACGAGTTTCATAAATTCAACAGAGAATCAGGAGGGGAAGTGTACTTCACAATGCCAAGGTTGCAGATTGATATCTGGTCCCTTGGATGCATCTTGGCAGAACTTTGTACCGGCAATGATTATTATACTTTTTTGGGTGAAACTGTGAAAGCGGATATCGATTCTGTCTTATTTCAAAATGATTCCCCGGCAACATTACTTGCAAGGGTGATCGGGATCATCGGTCCAATTGGTCAAAGTATGCTAGCAAAAGGACGGGATACCTATAAGTACTTCACAAAAAATCATATGCTTTATGAGAGGAATCAGGAAAGCAACAGGTTAGAATACCTGATTCTAAAGAAGACATCTTTGAGGCATAGATTACCGATGGGGGACCAAGGCTTCATTGACTTCGTTGCTCATTTGCTCGAGGTTAACCCGAAGAAGCGACCTTCTGCGTCTGAAGCTCTAAAGCACCCCTGGTTATCATACCCTTACGAACCGATATCATCTTGA

Protein sequence

>Msa0995870

MSKHLPKVQQVEYQRRSLSYELEFLFNYYLRVPETSEAIGSNERLATFTQHLINSAGSKMNGVTILKNSNGHVEPYSTDGGSKASNTSNASISQQSKTQMSEAFGAANNNVKTEEENNNLADNVLSRADENANSCNDVCKDCSIKTVFPFSKGDVSTSYSSSTYSEKVDEKRKPEIGDARAYIKEQVDEVGRAFNLGKLQGSSEQNNIGGLSFPLALEKQKEEYPRLPPVKIKSEDKPLTVNWSEKFESDGLAAKLASADSSLLIGSYLDVPIGQEIKNAGMRKATGGSWLSVSQGISEDTSDLVSGFATVGDGLSESVDYPNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGPAKEEDDDQSFAEEDSYFSGEQYLQAKNVEPVIGSDDPIGITVTNMYGRANGNDLMAQYDGELMDVEELNLMHAEPVWQGFVPHSGRLILLTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGVDVCIKIIKNDKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQIDIWSLGCILAELCTGNDYYTFLGETVKADIDSVLFQNDSPATLLARVIGIIGPIGQSMLAKGRDTYKYFTKNHMLYERNQESNRLEYLILKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS*