Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995930 | KEH16067.1 | 97.273 | 110 | 3 | 0 | 1 | 110 | 184 | 293 | 2.66e-72 | 227 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995930 | A0A072TFB0 | 97.273 | 110 | 3 | 0 | 1 | 110 | 184 | 293 | 1.27e-72 | 227 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
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PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995930 | MtrunA17_Chr6g0480541 | 97.273 | 110 | 3 | 0 | 1 | 110 | 1100 | 1209 | 6.91e-72 | 231 |
Msa0995930 | MtrunA17_Chr6g0480291 | 91.765 | 85 | 6 | 1 | 26 | 110 | 1 | 84 | 2.39e-51 | 156 |
Msa0995930 | MtrunA17_Chr5g0437131 | 55.556 | 108 | 48 | 0 | 1 | 108 | 605 | 712 | 3.33e-38 | 135 |
Msa0995930 | MtrunA17_Chr6g0480471 | 97.917 | 48 | 1 | 0 | 1 | 48 | 25 | 72 | 6.52e-30 | 102 |
Msa0995930 | MtrunA17_Chr6g0480191 | 97.619 | 42 | 1 | 0 | 69 | 110 | 1 | 42 | 5.11e-25 | 89.0 |
Msa0995930 | MtrunA17_Chr6g0480331 | 90.244 | 41 | 4 | 0 | 48 | 88 | 2 | 42 | 1.43e-21 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995930 | AT1G73450.1 | 82.727 | 110 | 19 | 0 | 1 | 110 | 1043 | 1152 | 2.09e-62 | 205 |
Msa0995930 | AT1G73460.2 | 82.727 | 110 | 19 | 0 | 1 | 110 | 1060 | 1169 | 2.79e-62 | 204 |
Msa0995930 | AT1G73460.1 | 82.727 | 110 | 19 | 0 | 1 | 110 | 1060 | 1169 | 2.79e-62 | 204 |
Msa0995930 | AT3G17750.1 | 85.455 | 110 | 16 | 0 | 1 | 110 | 1029 | 1138 | 2.93e-61 | 201 |
Msa0995930 | AT4G03175.1 | 52.174 | 92 | 44 | 0 | 11 | 102 | 2 | 93 | 2.23e-33 | 112 |
Msa0995930 | AT2G40120.1 | 50.000 | 102 | 51 | 0 | 1 | 102 | 463 | 564 | 1.77e-31 | 116 |
Find 36 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCAAAGAAGACATCTTTA+AGG | 0.177345 | 6_4:+73413934 | Msa0995930:CDS |
ACATTACTAGCTAGGGTAAT+TGG | 0.184368 | 6_4:+73413284 | Msa0995930:CDS |
TGCCTTAAAGATGTCTTCTT+TGG | 0.239781 | 6_4:-73413936 | None:intergenic |
GATGCAGAAGGTCGCTTCTT+CGG | 0.294316 | 6_4:-73414020 | None:intergenic |
AAGATGTCTTCTTTGGAATC+AGG | 0.325420 | 6_4:-73413929 | None:intergenic |
ATGCAGAAGGTCGCTTCTTC+GGG | 0.331076 | 6_4:-73414019 | None:intergenic |
ATGTTGTCGGGGAATCGTTT+TGG | 0.373434 | 6_4:-73413265 | None:intergenic |
GCTAGCATACTTTGACCAAT+TGG | 0.379617 | 6_4:-73413317 | None:intergenic |
CATTACTAGCTAGGGTAATT+GGG | 0.412390 | 6_4:+73413285 | Msa0995930:CDS |
CCCTAGCTAGTAATGTTGTC+GGG | 0.431529 | 6_4:-73413277 | None:intergenic |
AGAATACTTCAAGATGATAT+CGG | 0.460893 | 6_4:-73414083 | None:intergenic |
TTGATATGCAGGAAATCAAC+AGG | 0.465829 | 6_4:+73413898 | Msa0995930:intron |
CAAGATGATATCGGTTCGTA+AGG | 0.480516 | 6_4:-73414074 | None:intergenic |
ACCCTAGCTAGTAATGTTGT+CGG | 0.481543 | 6_4:-73413278 | None:intergenic |
ATTGGGATCATCGGTCCAAT+TGG | 0.485357 | 6_4:+73413302 | Msa0995930:CDS |
TATGCTTTATGAGAGGAATC+AGG | 0.494533 | 6_4:+73413379 | Msa0995930:CDS |
GGTCAAAGTATGCTAGCAAA+AGG | 0.496032 | 6_4:+73413323 | Msa0995930:CDS |
CAACAAAGTCAATGAAGCCT+TGG | 0.499867 | 6_4:-73413977 | None:intergenic |
CTGAAGCTCTAAAGCACCCC+TGG | 0.508338 | 6_4:+73414042 | Msa0995930:CDS |
CCCCGACAACATTACTAGCT+AGG | 0.522478 | 6_4:+73413276 | Msa0995930:CDS |
TTCGTAAGGGTATGATAACC+AGG | 0.523874 | 6_4:-73414060 | None:intergenic |
CCCGACAACATTACTAGCTA+GGG | 0.537010 | 6_4:+73413277 | Msa0995930:CDS |
TTTAAGGCATAGATTACCGA+TGG | 0.553714 | 6_4:+73413950 | Msa0995930:CDS |
CTTTGTTGCTCATTTGCTCG+AGG | 0.575791 | 6_4:+73413992 | Msa0995930:CDS |
AAGTATGCTAGCAAAAGGAC+GGG | 0.589744 | 6_4:+73413328 | Msa0995930:CDS |
AAAGTATGCTAGCAAAAGGA+CGG | 0.592834 | 6_4:+73413327 | Msa0995930:CDS |
GCTAGGGTAATTGGGATCAT+CGG | 0.603278 | 6_4:+73413293 | Msa0995930:CDS |
TTAAGGCATAGATTACCGAT+GGG | 0.609487 | 6_4:+73413951 | Msa0995930:CDS |
AAAATCATATGCTTTATGAG+AGG | 0.623112 | 6_4:+73413372 | Msa0995930:CDS |
TTTAGAGCTTCAGATGCAGA+AGG | 0.638379 | 6_4:-73414032 | None:intergenic |
CCTAGCTAGTAATGTTGTCG+GGG | 0.653018 | 6_4:-73413276 | None:intergenic |
AAGATGATATCGGTTCGTAA+GGG | 0.655236 | 6_4:-73414073 | None:intergenic |
TCGTAAGGGTATGATAACCA+GGG | 0.667962 | 6_4:-73414059 | None:intergenic |
CGTAAGGGTATGATAACCAG+GGG | 0.686121 | 6_4:-73414058 | None:intergenic |
AAGGCATAGATTACCGATGG+GGG | 0.690111 | 6_4:+73413953 | Msa0995930:CDS |
TAAGGCATAGATTACCGATG+GGG | 0.718545 | 6_4:+73413952 | Msa0995930:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATAGAAAATAACATATAT+AGG | - | chr6_4:73413621-73413640 | None:intergenic | 10.0% |
!! | TTATAGAAAATAACATATAT+AGG | - | chr6_4:73413621-73413640 | None:intergenic | 10.0% |
!!! | AGTCAATTTTAGAAATTTTA+GGG | - | chr6_4:73413519-73413538 | None:intergenic | 15.0% |
!!! | TAGTCAATTTTAGAAATTTT+AGG | - | chr6_4:73413520-73413539 | None:intergenic | 15.0% |
!!! | AGTCAATTTTAGAAATTTTA+GGG | - | chr6_4:73413519-73413538 | None:intergenic | 15.0% |
!!! | TAGTCAATTTTAGAAATTTT+AGG | - | chr6_4:73413520-73413539 | None:intergenic | 15.0% |
!! | TTAAATTGTTTATCCAAACA+TGG | - | chr6_4:73413563-73413582 | None:intergenic | 20.0% |
!! | CATTGTATGTTTAATTATCA+TGG | + | chr6_4:73413848-73413867 | Msa0995930:intron | 20.0% |
!! | TTAAATTGTTTATCCAAACA+TGG | - | chr6_4:73413563-73413582 | None:intergenic | 20.0% |
!! | CATTGTATGTTTAATTATCA+TGG | + | chr6_4:73413848-73413867 | Msa0995930:intron | 20.0% |
!! | CTCATAAAGCATATGATTTT+TGG | - | chr6_4:73413372-73413391 | None:intergenic | 25.0% |
! | AAAATCATATGCTTTATGAG+AGG | + | chr6_4:73413372-73413391 | Msa0995930:CDS | 25.0% |
! | AGACTATTTGAGAGAATTTA+TGG | - | chr6_4:73413763-73413782 | None:intergenic | 25.0% |
! | ATGTTTAATATGAGCATGTT+TGG | - | chr6_4:73413827-73413846 | None:intergenic | 25.0% |
!! | CTCATAAAGCATATGATTTT+TGG | - | chr6_4:73413372-73413391 | None:intergenic | 25.0% |
! | AAAATCATATGCTTTATGAG+AGG | + | chr6_4:73413372-73413391 | Msa0995930:CDS | 25.0% |
! | AGACTATTTGAGAGAATTTA+TGG | - | chr6_4:73413763-73413782 | None:intergenic | 25.0% |
! | ATGTTTAATATGAGCATGTT+TGG | - | chr6_4:73413827-73413846 | None:intergenic | 25.0% |
AATATGAGCATGTTTGGATT+GGG | - | chr6_4:73413821-73413840 | None:intergenic | 30.0% | |
TAATATGAGCATGTTTGGAT+TGG | - | chr6_4:73413822-73413841 | None:intergenic | 30.0% | |
TTCCAAAGAAGACATCTTTA+AGG | + | chr6_4:73413934-73413953 | Msa0995930:CDS | 30.0% | |
AATATGAGCATGTTTGGATT+GGG | - | chr6_4:73413821-73413840 | None:intergenic | 30.0% | |
TAATATGAGCATGTTTGGAT+TGG | - | chr6_4:73413822-73413841 | None:intergenic | 30.0% | |
TTCCAAAGAAGACATCTTTA+AGG | + | chr6_4:73413934-73413953 | Msa0995930:CDS | 30.0% | |
ACATTACTAGCTAGGGTAAT+TGG | + | chr6_4:73413284-73413303 | Msa0995930:CDS | 35.0% | |
CATTACTAGCTAGGGTAATT+GGG | + | chr6_4:73413285-73413304 | Msa0995930:CDS | 35.0% | |
AAAGTATGCTAGCAAAAGGA+CGG | + | chr6_4:73413327-73413346 | Msa0995930:CDS | 35.0% | |
TATGCTTTATGAGAGGAATC+AGG | + | chr6_4:73413379-73413398 | Msa0995930:CDS | 35.0% | |
TTGCAATCCTAGAGAGTTTA+CGG | + | chr6_4:73413695-73413714 | Msa0995930:intron | 35.0% | |
GTAATTTCCGTAAACTCTCT+AGG | - | chr6_4:73413705-73413724 | None:intergenic | 35.0% | |
CATGGAAAAATTATTCAGCG+AGG | + | chr6_4:73413866-73413885 | Msa0995930:intron | 35.0% | |
! | GGTATTGTGTATTGATATGC+AGG | + | chr6_4:73413887-73413906 | Msa0995930:intron | 35.0% |
TTGATATGCAGGAAATCAAC+AGG | + | chr6_4:73413898-73413917 | Msa0995930:intron | 35.0% | |
!! | AAGATGTCTTCTTTGGAATC+AGG | - | chr6_4:73413932-73413951 | None:intergenic | 35.0% |
TGCCTTAAAGATGTCTTCTT+TGG | - | chr6_4:73413939-73413958 | None:intergenic | 35.0% | |
! | TTTAAGGCATAGATTACCGA+TGG | + | chr6_4:73413950-73413969 | Msa0995930:CDS | 35.0% |
TTAAGGCATAGATTACCGAT+GGG | + | chr6_4:73413951-73413970 | Msa0995930:CDS | 35.0% | |
!! | AAGATGATATCGGTTCGTAA+GGG | - | chr6_4:73414076-73414095 | None:intergenic | 35.0% |
ACATTACTAGCTAGGGTAAT+TGG | + | chr6_4:73413284-73413303 | Msa0995930:CDS | 35.0% | |
CATTACTAGCTAGGGTAATT+GGG | + | chr6_4:73413285-73413304 | Msa0995930:CDS | 35.0% | |
AAAGTATGCTAGCAAAAGGA+CGG | + | chr6_4:73413327-73413346 | Msa0995930:CDS | 35.0% | |
TATGCTTTATGAGAGGAATC+AGG | + | chr6_4:73413379-73413398 | Msa0995930:CDS | 35.0% | |
TTGCAATCCTAGAGAGTTTA+CGG | + | chr6_4:73413695-73413714 | Msa0995930:intron | 35.0% | |
GTAATTTCCGTAAACTCTCT+AGG | - | chr6_4:73413705-73413724 | None:intergenic | 35.0% | |
CATGGAAAAATTATTCAGCG+AGG | + | chr6_4:73413866-73413885 | Msa0995930:intron | 35.0% | |
! | GGTATTGTGTATTGATATGC+AGG | + | chr6_4:73413887-73413906 | Msa0995930:intron | 35.0% |
TTGATATGCAGGAAATCAAC+AGG | + | chr6_4:73413898-73413917 | Msa0995930:intron | 35.0% | |
!! | AAGATGTCTTCTTTGGAATC+AGG | - | chr6_4:73413932-73413951 | None:intergenic | 35.0% |
TGCCTTAAAGATGTCTTCTT+TGG | - | chr6_4:73413939-73413958 | None:intergenic | 35.0% | |
! | TTTAAGGCATAGATTACCGA+TGG | + | chr6_4:73413950-73413969 | Msa0995930:CDS | 35.0% |
TTAAGGCATAGATTACCGAT+GGG | + | chr6_4:73413951-73413970 | Msa0995930:CDS | 35.0% | |
!! | AAGATGATATCGGTTCGTAA+GGG | - | chr6_4:73414076-73414095 | None:intergenic | 35.0% |
ACCCTAGCTAGTAATGTTGT+CGG | - | chr6_4:73413281-73413300 | None:intergenic | 40.0% | |
GCTAGCATACTTTGACCAAT+TGG | - | chr6_4:73413320-73413339 | None:intergenic | 40.0% | |
GGTCAAAGTATGCTAGCAAA+AGG | + | chr6_4:73413323-73413342 | Msa0995930:CDS | 40.0% | |
AAGTATGCTAGCAAAAGGAC+GGG | + | chr6_4:73413328-73413347 | Msa0995930:CDS | 40.0% | |
TCGCTTGTATTTGCCATGTT+TGG | + | chr6_4:73413547-73413566 | Msa0995930:intron | 40.0% | |
! | AAATAGTCTCACAAGTGCTG+CGG | + | chr6_4:73413774-73413793 | Msa0995930:intron | 40.0% |
TAAGGCATAGATTACCGATG+GGG | + | chr6_4:73413952-73413971 | Msa0995930:CDS | 40.0% | |
CAACAAAGTCAATGAAGCCT+TGG | - | chr6_4:73413980-73413999 | None:intergenic | 40.0% | |
! | TTTAGAGCTTCAGATGCAGA+AGG | - | chr6_4:73414035-73414054 | None:intergenic | 40.0% |
! | TCGTAAGGGTATGATAACCA+GGG | - | chr6_4:73414062-73414081 | None:intergenic | 40.0% |
! | TTCGTAAGGGTATGATAACC+AGG | - | chr6_4:73414063-73414082 | None:intergenic | 40.0% |
!! | CAAGATGATATCGGTTCGTA+AGG | - | chr6_4:73414077-73414096 | None:intergenic | 40.0% |
ACCCTAGCTAGTAATGTTGT+CGG | - | chr6_4:73413281-73413300 | None:intergenic | 40.0% | |
GCTAGCATACTTTGACCAAT+TGG | - | chr6_4:73413320-73413339 | None:intergenic | 40.0% | |
GGTCAAAGTATGCTAGCAAA+AGG | + | chr6_4:73413323-73413342 | Msa0995930:CDS | 40.0% | |
AAGTATGCTAGCAAAAGGAC+GGG | + | chr6_4:73413328-73413347 | Msa0995930:CDS | 40.0% | |
TCGCTTGTATTTGCCATGTT+TGG | + | chr6_4:73413547-73413566 | Msa0995930:intron | 40.0% | |
! | AAATAGTCTCACAAGTGCTG+CGG | + | chr6_4:73413774-73413793 | Msa0995930:intron | 40.0% |
TAAGGCATAGATTACCGATG+GGG | + | chr6_4:73413952-73413971 | Msa0995930:CDS | 40.0% | |
CAACAAAGTCAATGAAGCCT+TGG | - | chr6_4:73413980-73413999 | None:intergenic | 40.0% | |
! | TTTAGAGCTTCAGATGCAGA+AGG | - | chr6_4:73414035-73414054 | None:intergenic | 40.0% |
! | TCGTAAGGGTATGATAACCA+GGG | - | chr6_4:73414062-73414081 | None:intergenic | 40.0% |
! | TTCGTAAGGGTATGATAACC+AGG | - | chr6_4:73414063-73414082 | None:intergenic | 40.0% |
!! | CAAGATGATATCGGTTCGTA+AGG | - | chr6_4:73414077-73414096 | None:intergenic | 40.0% |
! | ATGTTGTCGGGGAATCGTTT+TGG | - | chr6_4:73413268-73413287 | None:intergenic | 45.0% |
CCTAGCTAGTAATGTTGTCG+GGG | - | chr6_4:73413279-73413298 | None:intergenic | 45.0% | |
CCCTAGCTAGTAATGTTGTC+GGG | - | chr6_4:73413280-73413299 | None:intergenic | 45.0% | |
CCCGACAACATTACTAGCTA+GGG | + | chr6_4:73413277-73413296 | Msa0995930:CDS | 45.0% | |
GCTAGGGTAATTGGGATCAT+CGG | + | chr6_4:73413293-73413312 | Msa0995930:CDS | 45.0% | |
ATTGGGATCATCGGTCCAAT+TGG | + | chr6_4:73413302-73413321 | Msa0995930:CDS | 45.0% | |
! | AATAGTCTCACAAGTGCTGC+GGG | + | chr6_4:73413775-73413794 | Msa0995930:intron | 45.0% |
AAGGCATAGATTACCGATGG+GGG | + | chr6_4:73413953-73413972 | Msa0995930:CDS | 45.0% | |
CTTTGTTGCTCATTTGCTCG+AGG | + | chr6_4:73413992-73414011 | Msa0995930:CDS | 45.0% | |
! | CGTAAGGGTATGATAACCAG+GGG | - | chr6_4:73414061-73414080 | None:intergenic | 45.0% |
! | ATGTTGTCGGGGAATCGTTT+TGG | - | chr6_4:73413268-73413287 | None:intergenic | 45.0% |
CCTAGCTAGTAATGTTGTCG+GGG | - | chr6_4:73413279-73413298 | None:intergenic | 45.0% | |
CCCTAGCTAGTAATGTTGTC+GGG | - | chr6_4:73413280-73413299 | None:intergenic | 45.0% | |
CCCGACAACATTACTAGCTA+GGG | + | chr6_4:73413277-73413296 | Msa0995930:CDS | 45.0% | |
GCTAGGGTAATTGGGATCAT+CGG | + | chr6_4:73413293-73413312 | Msa0995930:CDS | 45.0% | |
ATTGGGATCATCGGTCCAAT+TGG | + | chr6_4:73413302-73413321 | Msa0995930:CDS | 45.0% | |
! | AATAGTCTCACAAGTGCTGC+GGG | + | chr6_4:73413775-73413794 | Msa0995930:intron | 45.0% |
AAGGCATAGATTACCGATGG+GGG | + | chr6_4:73413953-73413972 | Msa0995930:CDS | 45.0% | |
CTTTGTTGCTCATTTGCTCG+AGG | + | chr6_4:73413992-73414011 | Msa0995930:CDS | 45.0% | |
! | CGTAAGGGTATGATAACCAG+GGG | - | chr6_4:73414061-73414080 | None:intergenic | 45.0% |
CCCCGACAACATTACTAGCT+AGG | + | chr6_4:73413276-73413295 | Msa0995930:CDS | 50.0% | |
ATGCAGAAGGTCGCTTCTTC+GGG | - | chr6_4:73414022-73414041 | None:intergenic | 50.0% | |
GATGCAGAAGGTCGCTTCTT+CGG | - | chr6_4:73414023-73414042 | None:intergenic | 50.0% | |
CCCCGACAACATTACTAGCT+AGG | + | chr6_4:73413276-73413295 | Msa0995930:CDS | 50.0% | |
ATGCAGAAGGTCGCTTCTTC+GGG | - | chr6_4:73414022-73414041 | None:intergenic | 50.0% | |
GATGCAGAAGGTCGCTTCTT+CGG | - | chr6_4:73414023-73414042 | None:intergenic | 50.0% | |
AGATTACCGATGGGGGACCA+AGG | + | chr6_4:73413960-73413979 | Msa0995930:CDS | 55.0% | |
ATGAAGCCTTGGTCCCCCAT+CGG | - | chr6_4:73413969-73413988 | None:intergenic | 55.0% | |
!! | CTGAAGCTCTAAAGCACCCC+TGG | + | chr6_4:73414042-73414061 | Msa0995930:CDS | 55.0% |
AGATTACCGATGGGGGACCA+AGG | + | chr6_4:73413960-73413979 | Msa0995930:CDS | 55.0% | |
ATGAAGCCTTGGTCCCCCAT+CGG | - | chr6_4:73413969-73413988 | None:intergenic | 55.0% | |
!! | CTGAAGCTCTAAAGCACCCC+TGG | + | chr6_4:73414042-73414061 | Msa0995930:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 73413257 | 73414097 | 73413257 | ID=Msa0995930;Name=Msa0995930 |
chr6_4 | mRNA | 73413257 | 73414097 | 73413257 | ID=Msa0995930-mRNA-1;Parent=Msa0995930;Name=Msa0995930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|110 |
chr6_4 | exon | 73413257 | 73413400 | 73413257 | ID=Msa0995930-mRNA-1:exon:13625;Parent=Msa0995930-mRNA-1 |
chr6_4 | exon | 73413909 | 73414097 | 73413909 | ID=Msa0995930-mRNA-1:exon:13626;Parent=Msa0995930-mRNA-1 |
chr6_4 | CDS | 73413257 | 73413400 | 73413257 | ID=Msa0995930-mRNA-1:cds;Parent=Msa0995930-mRNA-1 |
chr6_4 | CDS | 73413909 | 73414097 | 73413909 | ID=Msa0995930-mRNA-1:cds;Parent=Msa0995930-mRNA-1 |
Gene Sequence |
Protein sequence |