Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995970 | XP_024642081.1 | 78.694 | 291 | 34 | 3 | 1 | 291 | 1 | 263 | 7.87e-159 | 453 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995970 | sp|Q568K5|NAA40_DANRE | 34.583 | 240 | 128 | 5 | 15 | 252 | 4 | 216 | 1.82e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995970 | A0A396HG85 | 78.694 | 291 | 34 | 3 | 1 | 291 | 1 | 263 | 3.76e-159 | 453 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0995970 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995970 | MtrunA17_Chr6g0479551 | 78.694 | 291 | 34 | 3 | 1 | 291 | 1 | 263 | 7.24e-163 | 453 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995970 | AT1G18335.1 | 53.390 | 236 | 102 | 2 | 29 | 263 | 33 | 261 | 1.57e-75 | 232 |
| Msa0995970 | AT1G18335.3 | 53.165 | 237 | 103 | 2 | 29 | 264 | 33 | 262 | 2.30e-75 | 232 |
| Msa0995970 | AT1G18335.2 | 53.165 | 237 | 103 | 2 | 29 | 264 | 33 | 262 | 2.30e-75 | 232 |
Find 65 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTACTATCTTTCTTATAT+TGG | 0.159312 | 6_4:+73504666 | Msa0995970:three_prime_UTR |
| TTCATTAGTTCCATGATATC+TGG | 0.166829 | 6_4:+73504523 | Msa0995970:intron |
| CATTGGTTCCACGGTGAAAT+TGG | 0.190501 | 6_4:-73498724 | None:intergenic |
| ACCCTTCTTATCAATACTTA+AGG | 0.354468 | 6_4:+73504627 | Msa0995970:three_prime_UTR |
| AGCATCTCGGAGTTCATTGC+TGG | 0.366020 | 6_4:-73498701 | None:intergenic |
| ATTTCGAAGCAGCGATAAAC+AGG | 0.379110 | 6_4:-73498941 | None:intergenic |
| TCTTGCCACTCGGATCCATA+TGG | 0.379170 | 6_4:-73502109 | None:intergenic |
| GGCGTTGTTGTTTCTTGCAT+TGG | 0.387164 | 6_4:-73498741 | None:intergenic |
| TGTACATTACCGCTTTGTTT+TGG | 0.388601 | 6_4:+73502291 | Msa0995970:CDS |
| TATCGCTGCTTCGAAATTAA+CGG | 0.393702 | 6_4:+73498947 | Msa0995970:CDS |
| ACCAATGGATAAAATTTAGA+AGG | 0.404850 | 6_4:-73503748 | None:intergenic |
| CTTAACATGGAAGGCCCATA+TGG | 0.419156 | 6_4:+73502094 | Msa0995970:CDS |
| ATTATAGATAATCAATCTAA+TGG | 0.424625 | 6_4:-73504241 | None:intergenic |
| CAAATCAGCATATAGCATAA+AGG | 0.430168 | 6_4:+73498901 | Msa0995970:CDS |
| ATATATTCAGAAACTTCTTA+AGG | 0.430179 | 6_4:+73500089 | Msa0995970:CDS |
| ATCCTTAAGTATTGATAAGA+AGG | 0.433255 | 6_4:-73504629 | None:intergenic |
| CTTGTCCAGGGGAAAGGATT+GGG | 0.433550 | 6_4:+73502361 | Msa0995970:CDS |
| ACAAATATATAGCGTGCTTC+AGG | 0.453405 | 6_4:-73502166 | None:intergenic |
| ACAGTTCGAGCCTCTTGTCC+AGG | 0.456463 | 6_4:+73502348 | Msa0995970:CDS |
| TCTTCTTGACGACTAGTTGA+AGG | 0.460099 | 6_4:-73502247 | None:intergenic |
| AAAGGTGAAGCGTAGAGAAA+TGG | 0.460189 | 6_4:+73502138 | Msa0995970:CDS |
| GCTTTCCCAATCCTTTCCCC+TGG | 0.468580 | 6_4:-73502366 | None:intergenic |
| CTCCATTCATCTGTAACTGT+TGG | 0.471050 | 6_4:+73504585 | Msa0995970:three_prime_UTR |
| GAAAGATAGTAGAGTTTGCA+AGG | 0.474451 | 6_4:-73504657 | None:intergenic |
| AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6_4:+73502375 | Msa0995970:CDS |
| TCATTAGTTCCATGATATCT+GGG | 0.475518 | 6_4:+73504524 | Msa0995970:intron |
| AATATATTGTTTAACAGAAG+AGG | 0.479814 | 6_4:-73500073 | None:intergenic |
| CCGTCGTTGCAGAGAGAAGA+AGG | 0.481736 | 6_4:+73498762 | Msa0995970:CDS |
| TTAATACATCCCAGATATCA+TGG | 0.489015 | 6_4:-73504533 | None:intergenic |
| ATCCAACAGTTACAGATGAA+TGG | 0.489155 | 6_4:-73504587 | None:intergenic |
| GAAGATAGTGGTCCCTTGGT+TGG | 0.492453 | 6_4:+73502265 | Msa0995970:CDS |
| GAGCCTCTTGTCCAGGGGAA+AGG | 0.495693 | 6_4:+73502355 | Msa0995970:CDS |
| TCTTGTCCAGGGGAAAGGAT+TGG | 0.495708 | 6_4:+73502360 | Msa0995970:CDS |
| CCTTCTTCTCTCTGCAACGA+CGG | 0.500060 | 6_4:-73498762 | None:intergenic |
| TATTGAGCTTATCGCCCAAA+AGG | 0.500241 | 6_4:+73502402 | Msa0995970:CDS |
| ACTTTCCTTGTAGAACTGCA+TGG | 0.510555 | 6_4:+73502662 | Msa0995970:intron |
| CTTTCCTTGTAGAACTGCAT+GGG | 0.513452 | 6_4:+73502663 | Msa0995970:intron |
| CTCACAGTGTGTTTAAAGTC+AGG | 0.518976 | 6_4:+73500033 | Msa0995970:CDS |
| TGTTTCTTGCATTGGTTCCA+CGG | 0.532357 | 6_4:-73498733 | None:intergenic |
| CGAGTGGCAAGAGGAAGAAA+AGG | 0.534946 | 6_4:+73502120 | Msa0995970:CDS |
| TGTCGTGCTAACTGTTCAAA+AGG | 0.539000 | 6_4:+73502689 | Msa0995970:CDS |
| CAGTTCGAGCCTCTTGTCCA+GGG | 0.547391 | 6_4:+73502349 | Msa0995970:CDS |
| TCAAGAAGATAGTGGTCCCT+TGG | 0.557490 | 6_4:+73502261 | Msa0995970:CDS |
| CATCTCGTCAGCATTTGCAT+TGG | 0.562164 | 6_4:-73502200 | None:intergenic |
| AATCCTTTCCCCTGGACAAG+AGG | 0.563832 | 6_4:-73502358 | None:intergenic |
| ACGCTATATATTTGTGCATG+AGG | 0.569652 | 6_4:+73502174 | Msa0995970:CDS |
| ACTAGTCGTCAAGAAGATAG+TGG | 0.589965 | 6_4:+73502253 | Msa0995970:CDS |
| AATCTACAGCTTAACATGGA+AGG | 0.595080 | 6_4:+73502085 | Msa0995970:intron |
| ATATGGATCCGAGTGGCAAG+AGG | 0.624303 | 6_4:+73502111 | Msa0995970:CDS |
| AGTTCATACACATAAAGTAC+CGG | 0.630714 | 6_4:-73502325 | None:intergenic |
| TCCTTAAGTATTGATAAGAA+GGG | 0.634915 | 6_4:-73504628 | None:intergenic |
| CAATCTAATGGTGCACCGAG+TGG | 0.640629 | 6_4:-73504229 | None:intergenic |
| GATAAACAGGAAAATAAGTG+AGG | 0.644557 | 6_4:-73498928 | None:intergenic |
| ACGGTGAAATTGGAGCATCT+CGG | 0.652779 | 6_4:-73498714 | None:intergenic |
| TCTAAATCTACAGCTTAACA+TGG | 0.653637 | 6_4:+73502081 | Msa0995970:intron |
| TAATGTACAAATCCAACCAA+GGG | 0.669573 | 6_4:-73502277 | None:intergenic |
| GTAATGTACAAATCCAACCA+AGG | 0.669580 | 6_4:-73502278 | None:intergenic |
| GATGACAACAGTGCTGACTG+AGG | 0.675729 | 6_4:+73502219 | Msa0995970:CDS |
| AAGAAGGGTCAACAAGAATG+CGG | 0.682033 | 6_4:-73504613 | None:intergenic |
| AGTTCGAGCCTCTTGTCCAG+GGG | 0.682287 | 6_4:+73502350 | Msa0995970:CDS |
| GTGTGTTTAAAGTCAGGACA+TGG | 0.688181 | 6_4:+73500039 | Msa0995970:CDS |
| CCTCTTCTTCCAAAACAAAG+CGG | 0.723548 | 6_4:-73502300 | None:intergenic |
| CTGACTTTAAACACACTGTG+AGG | 0.735036 | 6_4:-73500032 | None:intergenic |
| AAGGCCCATATGGATCCGAG+TGG | 0.763208 | 6_4:+73502104 | Msa0995970:CDS |
| GAGATGCTCCAATTTCACCG+TGG | 0.799244 | 6_4:+73498716 | Msa0995970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATTTCAACATAATTA+TGG | + | chr6_4:73499926-73499945 | Msa0995970:intron | 10.0% |
| !!! | TTGAAATTTTAAAAATGATT+TGG | + | chr6_4:73501257-73501276 | Msa0995970:intron | 10.0% |
| !!! | TGAAATTTTAAAAATGATTT+GGG | + | chr6_4:73501258-73501277 | Msa0995970:intron | 10.0% |
| !!! | CATTTTTTTTTTTTTTGATA+AGG | - | chr6_4:73501891-73501910 | None:intergenic | 10.0% |
| !! | TATCAAAAAAAAAAAAAATG+AGG | + | chr6_4:73501891-73501910 | Msa0995970:intron | 10.0% |
| !! | ATCAAAAAAAAAAAAAATGA+GGG | + | chr6_4:73501892-73501911 | Msa0995970:intron | 10.0% |
| !!! | CAATTTATTGATTTATTAAA+AGG | + | chr6_4:73502593-73502612 | Msa0995970:intron | 10.0% |
| !! | TGAAATACAATTAATTAATA+AGG | - | chr6_4:73502883-73502902 | None:intergenic | 10.0% |
| !! | TGTAATAGATTTATATATAA+GGG | + | chr6_4:73503029-73503048 | Msa0995970:intron | 10.0% |
| !!! | TTTTTTCAATTAAGATAATG+AGG | + | chr6_4:73499523-73499542 | Msa0995970:intron | 15.0% |
| !!! | TTTTTCAATTAAGATAATGA+GGG | + | chr6_4:73499524-73499543 | Msa0995970:intron | 15.0% |
| !!! | ATTATAGTCTTATAAACTAT+AGG | - | chr6_4:73499901-73499920 | None:intergenic | 15.0% |
| !!! | GAAATTTTAAAAATGATTTG+GGG | + | chr6_4:73501259-73501278 | Msa0995970:intron | 15.0% |
| !!! | AAATTTTAAAAATGATTTGG+GGG | + | chr6_4:73501260-73501279 | Msa0995970:intron | 15.0% |
| !!! | ACAACAATTTCATTTTTTAT+AGG | - | chr6_4:73501455-73501474 | None:intergenic | 15.0% |
| !! | ATAGAATATAGTTATATATG+TGG | - | chr6_4:73503008-73503027 | None:intergenic | 15.0% |
| !! | GTGTAATAGATTTATATATA+AGG | + | chr6_4:73503028-73503047 | Msa0995970:intron | 15.0% |
| !! | TTCATAATTCTCATAATATT+TGG | + | chr6_4:73503313-73503332 | Msa0995970:intron | 15.0% |
| !! | ATTCTCAAAATAAAAAGTTA+AGG | + | chr6_4:73503488-73503507 | Msa0995970:intron | 15.0% |
| !! | TTCATAATTCTCATAATATT+TGG | + | chr6_4:73503313-73503332 | Msa0995970:intron | 15.0% |
| !! | ATTATAGATAATCAATCTAA+TGG | - | chr6_4:73504244-73504263 | None:intergenic | 15.0% |
| !! | AAGTTTCTTTATTGAATTAG+CGG | - | chr6_4:73499787-73499806 | None:intergenic | 20.0% |
| !! | AATATATTGTTTAACAGAAG+AGG | - | chr6_4:73500076-73500095 | None:intergenic | 20.0% |
| !! | ATATATTCAGAAACTTCTTA+AGG | + | chr6_4:73500089-73500108 | Msa0995970:CDS | 20.0% |
| !!! | ACAATTATATTTGTTGAGTA+TGG | + | chr6_4:73500167-73500186 | Msa0995970:intron | 20.0% |
| !!! | AATTTTAAAAATGATTTGGG+GGG | + | chr6_4:73501261-73501280 | Msa0995970:intron | 20.0% |
| !!! | ATTTCATTTTTTATAGGCTT+TGG | - | chr6_4:73501449-73501468 | None:intergenic | 20.0% |
| !! | CTATCATGAACATAAAAAAA+GGG | - | chr6_4:73502008-73502027 | None:intergenic | 20.0% |
| !! | TATCAAAGATCATATTAGAT+GGG | - | chr6_4:73502633-73502652 | None:intergenic | 20.0% |
| !! | ATATCAAAGATCATATTAGA+TGG | - | chr6_4:73502634-73502653 | None:intergenic | 20.0% |
| !!! | ATTTTTACACAAGTAAACTA+AGG | + | chr6_4:73502730-73502749 | Msa0995970:CDS | 20.0% |
| !! | AGTGATAAAAAATTCAATGA+TGG | - | chr6_4:73502777-73502796 | None:intergenic | 20.0% |
| !!! | TTTGTAATGATAATGTTAGT+TGG | + | chr6_4:73503136-73503155 | Msa0995970:intron | 20.0% |
| !! | ATTCTCACAATAAAAAGTTA+AGG | + | chr6_4:73503228-73503247 | Msa0995970:intron | 20.0% |
| !! | GAATTATGAAAGTAGAAAAT+AGG | - | chr6_4:73503303-73503322 | None:intergenic | 20.0% |
| !!! | TTTGTAATGATAATGTTAGT+TGG | + | chr6_4:73503136-73503155 | Msa0995970:intron | 20.0% |
| !! | AGTTTATGAAAGTAGAAAAT+AGG | - | chr6_4:73503278-73503297 | None:intergenic | 20.0% |
| !! | GAATTATGAAAGTAGAAAAT+AGG | - | chr6_4:73503303-73503322 | None:intergenic | 20.0% |
| !! | TATATCTTGATAGATAACTT+GGG | - | chr6_4:73503605-73503624 | None:intergenic | 20.0% |
| !! | ATATATCTTGATAGATAACT+TGG | - | chr6_4:73503606-73503625 | None:intergenic | 20.0% |
| !! | GAAAAATCTAGAAAGTAATT+AGG | - | chr6_4:73503632-73503651 | None:intergenic | 20.0% |
| !!! | TTTCATAACACTTATGATTT+TGG | - | chr6_4:73503785-73503804 | None:intergenic | 20.0% |
| !!! | CTATGCACAAATTAATTTTT+TGG | + | chr6_4:73503807-73503826 | Msa0995970:intron | 20.0% |
| !! | TTGATAGATAATCAATCTAA+TGG | - | chr6_4:73503926-73503945 | None:intergenic | 20.0% |
| !! | GAAAAATCTAGAAAGTAATT+AGG | - | chr6_4:73503632-73503651 | None:intergenic | 20.0% |
| !!! | TTTCATAACACTTATGATTT+TGG | - | chr6_4:73503785-73503804 | None:intergenic | 20.0% |
| !!! | CTATGCACAAATTAATTTTT+CGG | + | chr6_4:73503807-73503826 | Msa0995970:intron | 20.0% |
| ! | GCATTTAACAAAATCAAAAG+CGG | - | chr6_4:73498976-73498995 | None:intergenic | 25.0% |
| !! | GTTTTTCATAAGATATCATG+AGG | + | chr6_4:73499146-73499165 | Msa0995970:intron | 25.0% |
| ! | CTATAAGCTTAAATACTACT+CGG | + | chr6_4:73499580-73499599 | Msa0995970:intron | 25.0% |
| !!! | TTACAATGAAGGTACATTTT+TGG | - | chr6_4:73500549-73500568 | None:intergenic | 25.0% |
| ! | AACAGTTGAAAATTTGAACT+TGG | + | chr6_4:73500760-73500779 | Msa0995970:intron | 25.0% |
| ! | AGAAGGATAAAGCAAATAAA+AGG | - | chr6_4:73501533-73501552 | None:intergenic | 25.0% |
| ! | CCTATCATGAACATAAAAAA+AGG | - | chr6_4:73502009-73502028 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTATGTTCATGAT+AGG | + | chr6_4:73502006-73502025 | Msa0995970:intron | 25.0% |
| !! | TGTTAGCTTATTCATTGAAA+TGG | + | chr6_4:73502033-73502052 | Msa0995970:intron | 25.0% |
| !! | GTTAGCTTATTCATTGAAAT+GGG | + | chr6_4:73502034-73502053 | Msa0995970:intron | 25.0% |
| !! | AAAACAATTTAGCACCTTTT+GGG | - | chr6_4:73502419-73502438 | None:intergenic | 25.0% |
| !! | AAAAACAATTTAGCACCTTT+TGG | - | chr6_4:73502420-73502439 | None:intergenic | 25.0% |
| ! | GAATTATTGTTATGTTGCAA+AGG | + | chr6_4:73502472-73502491 | Msa0995970:intron | 25.0% |
| ! | TCAAGTTTGATATGAATGAA+AGG | + | chr6_4:73502819-73502838 | Msa0995970:intron | 25.0% |
| ! | CAAGTTTGATATGAATGAAA+GGG | + | chr6_4:73502820-73502839 | Msa0995970:intron | 25.0% |
| !! | ATATTTTCTGCAATGCATTA+AGG | - | chr6_4:73502907-73502926 | None:intergenic | 25.0% |
| ! | ATGATTATACATGAACTTGA+AGG | + | chr6_4:73503167-73503186 | Msa0995970:intron | 25.0% |
| ! | ATGATTATACATGAACTTGA+AGG | + | chr6_4:73503167-73503186 | Msa0995970:intron | 25.0% |
| ! | ACGAAGACTAAACATAAAAA+GGG | - | chr6_4:73503675-73503694 | None:intergenic | 25.0% |
| ! | AACGAAGACTAAACATAAAA+AGG | - | chr6_4:73503676-73503695 | None:intergenic | 25.0% |
| !! | ACCTTCTAAATTTTATCCAT+TGG | + | chr6_4:73503747-73503766 | Msa0995970:CDS | 25.0% |
| ! | ACCAATGGATAAAATTTAGA+AGG | - | chr6_4:73503751-73503770 | None:intergenic | 25.0% |
| !!! | TAACACTTATGATTTTGGAA+GGG | - | chr6_4:73503780-73503799 | None:intergenic | 25.0% |
| !! | ATAACACTTATGATTTTGGA+AGG | - | chr6_4:73503781-73503800 | None:intergenic | 25.0% |
| !!! | TGAAGCTAAAACTATTTTTG+AGG | + | chr6_4:73503884-73503903 | Msa0995970:CDS | 25.0% |
| ! | ACGAAGACTAAACATAAAAA+GGG | - | chr6_4:73503675-73503694 | None:intergenic | 25.0% |
| ! | AACGAAGACTAAACATAAAA+AGG | - | chr6_4:73503676-73503695 | None:intergenic | 25.0% |
| !!! | TGAAGCTAAAACTATTTTTG+AGG | + | chr6_4:73503884-73503903 | Msa0995970:CDS | 25.0% |
| ! | AATTTCATAAAACCTCTTCT+AGG | + | chr6_4:73504274-73504293 | Msa0995970:intron | 25.0% |
| ! | TATCATGGAACTAATGAAAA+AGG | - | chr6_4:73504521-73504540 | None:intergenic | 25.0% |
| !!! | TCCTTAAGTATTGATAAGAA+GGG | - | chr6_4:73504631-73504650 | None:intergenic | 25.0% |
| !!! | ATCCTTAAGTATTGATAAGA+AGG | - | chr6_4:73504632-73504651 | None:intergenic | 25.0% |
| ! | CTCTACTATCTTTCTTATAT+TGG | + | chr6_4:73504666-73504685 | Msa0995970:three_prime_UTR | 25.0% |
| TTCAAAAACACTCGTGAATT+AGG | - | chr6_4:73498819-73498838 | None:intergenic | 30.0% | |
| CAAATCAGCATATAGCATAA+AGG | + | chr6_4:73498901-73498920 | Msa0995970:CDS | 30.0% | |
| GATAAACAGGAAAATAAGTG+AGG | - | chr6_4:73498931-73498950 | None:intergenic | 30.0% | |
| AGGAGCTTATGAAAATAAGT+TGG | + | chr6_4:73499166-73499185 | Msa0995970:intron | 30.0% | |
| !!! | ACAAAGTTTTAGGATGTGTT+TGG | - | chr6_4:73499287-73499306 | None:intergenic | 30.0% |
| ! | CCAAACAGTAACAAAGTTTT+AGG | - | chr6_4:73499297-73499316 | None:intergenic | 30.0% |
| CCTAAAACTTTGTTACTGTT+TGG | + | chr6_4:73499294-73499313 | Msa0995970:intron | 30.0% | |
| TAACTGATAAGCTAACTGAT+AGG | + | chr6_4:73499331-73499350 | Msa0995970:intron | 30.0% | |
| AACTGATAAGCTAACTGATA+GGG | + | chr6_4:73499332-73499351 | Msa0995970:intron | 30.0% | |
| ! | CTTATTGAATTCGAAGTGTT+TGG | + | chr6_4:73499384-73499403 | Msa0995970:intron | 30.0% |
| CTAACCACATTACTAATTAC+AGG | + | chr6_4:73499857-73499876 | Msa0995970:intron | 30.0% | |
| CTGGAAATAAGGTCAAAATT+AGG | - | chr6_4:73500011-73500030 | None:intergenic | 30.0% | |
| !! | CTAATTTTGACCTTATTTCC+AGG | + | chr6_4:73500009-73500028 | Msa0995970:intron | 30.0% |
| ! | ATTTTCCAATAATGCAATGC+TGG | - | chr6_4:73500405-73500424 | None:intergenic | 30.0% |
| CAAGAACAGACAATGAAATT+CGG | - | chr6_4:73500469-73500488 | None:intergenic | 30.0% | |
| !!! | TATCTAGTTTTGTTCACGAT+TGG | + | chr6_4:73500501-73500520 | Msa0995970:intron | 30.0% |
| AGTTGAAAATTTGAACTTGG+AGG | + | chr6_4:73500763-73500782 | Msa0995970:intron | 30.0% | |
| TTCCTTATTGAACTCTGATA+TGG | + | chr6_4:73500820-73500839 | Msa0995970:intron | 30.0% | |
| TTCCATATCAGAGTTCAATA+AGG | - | chr6_4:73500825-73500844 | None:intergenic | 30.0% | |
| AATTGATCATTCCTTAGAGA+AGG | + | chr6_4:73501150-73501169 | Msa0995970:intron | 30.0% | |
| CATTGTTCCTATATATAGTG+AGG | + | chr6_4:73501219-73501238 | Msa0995970:intron | 30.0% | |
| ! | TTCTGTCTATTTGAAACAAC+AGG | - | chr6_4:73501352-73501371 | None:intergenic | 30.0% |
| ! | TGCTTTATCCTTCTTTTTGT+CGG | + | chr6_4:73501539-73501558 | Msa0995970:intron | 30.0% |
| ! | GCTTTATTGTATCATGTAGA+GGG | + | chr6_4:73501561-73501580 | Msa0995970:intron | 30.0% |
| CTTTATTGTATCATGTAGAG+GGG | + | chr6_4:73501562-73501581 | Msa0995970:intron | 30.0% | |
| AAAAAAAAAAAAGGGCAACC+CGG | - | chr6_4:73501750-73501769 | None:intergenic | 30.0% | |
| AATACACCAAAGTCAAACTA+AGG | - | chr6_4:73501814-73501833 | None:intergenic | 30.0% | |
| ! | GTGTATTGATCATGTGTATA+CGG | + | chr6_4:73501827-73501846 | Msa0995970:intron | 30.0% |
| ! | TGTATTGATCATGTGTATAC+GGG | + | chr6_4:73501828-73501847 | Msa0995970:intron | 30.0% |
| AAACACTAAATGTCAGGATT+AGG | - | chr6_4:73501862-73501881 | None:intergenic | 30.0% | |
| CACAAAAAACACTAAATGTC+AGG | - | chr6_4:73501868-73501887 | None:intergenic | 30.0% | |
| ! | AAAAAAATGAGGGTGAGTTT+TGG | + | chr6_4:73501902-73501921 | Msa0995970:intron | 30.0% |
| TCTAAATCTACAGCTTAACA+TGG | + | chr6_4:73502081-73502100 | Msa0995970:intron | 30.0% | |
| TAATGTACAAATCCAACCAA+GGG | - | chr6_4:73502280-73502299 | None:intergenic | 30.0% | |
| AGTTCATACACATAAAGTAC+CGG | - | chr6_4:73502328-73502347 | None:intergenic | 30.0% | |
| TATAGTCTAGGAAAAGATGA+TGG | + | chr6_4:73502503-73502522 | Msa0995970:intron | 30.0% | |
| ! | TCTCTTTTTGTAGACATATG+CGG | - | chr6_4:73502959-73502978 | None:intergenic | 30.0% |
| AAAAAGTTAAGGATCTTTGC+AGG | + | chr6_4:73503239-73503258 | Msa0995970:intron | 30.0% | |
| AAAAAGTTAAGGATCTTTGC+AGG | + | chr6_4:73503239-73503258 | Msa0995970:intron | 30.0% | |
| AGACTAAACATAAAAAGGGA+GGG | - | chr6_4:73503671-73503690 | None:intergenic | 30.0% | |
| AAGACTAAACATAAAAAGGG+AGG | - | chr6_4:73503672-73503691 | None:intergenic | 30.0% | |
| !! | TTTAGTCTTCGTTTTGTTGA+CGG | + | chr6_4:73503683-73503702 | Msa0995970:intron | 30.0% |
| !! | AACACTTATGATTTTGGAAG+GGG | - | chr6_4:73503779-73503798 | None:intergenic | 30.0% |
| !!! | TATTTTTGAGGTAAACCACT+CGG | + | chr6_4:73503896-73503915 | Msa0995970:intron | 30.0% |
| !! | TTTAGTCTTCGTTTTGTTGA+CGG | + | chr6_4:73503683-73503702 | Msa0995970:intron | 30.0% |
| !! | ACCTTCTAAAGTTTATCCAA+TGG | + | chr6_4:73504072-73504091 | Msa0995970:intron | 30.0% |
| ACCATTGGATAAACTTTAGA+AGG | - | chr6_4:73504076-73504095 | None:intergenic | 30.0% | |
| ! | TATGATTTTGGACATACCAT+TGG | - | chr6_4:73504091-73504110 | None:intergenic | 30.0% |
| !!! | TATTTTTGAGGTAAACCACT+CGG | + | chr6_4:73503896-73503915 | Msa0995970:intron | 30.0% |
| ! | TCAAAGGGGAATATGTTTTA+TGG | - | chr6_4:73504337-73504356 | None:intergenic | 30.0% |
| ATCTACACAAATAGCTCAAA+GGG | - | chr6_4:73504352-73504371 | None:intergenic | 30.0% | |
| GCTATTTGTGTAGATCATAT+CGG | + | chr6_4:73504357-73504376 | Msa0995970:intron | 30.0% | |
| ATATTTACCGATAGCTCAAA+GGG | - | chr6_4:73504423-73504442 | None:intergenic | 30.0% | |
| AATATTTACCGATAGCTCAA+AGG | - | chr6_4:73504424-73504443 | None:intergenic | 30.0% | |
| TTCATTAGTTCCATGATATC+TGG | + | chr6_4:73504523-73504542 | Msa0995970:intron | 30.0% | |
| TCATTAGTTCCATGATATCT+GGG | + | chr6_4:73504524-73504543 | Msa0995970:intron | 30.0% | |
| TTAATACATCCCAGATATCA+TGG | - | chr6_4:73504536-73504555 | None:intergenic | 30.0% | |
| ACCCTTCTTATCAATACTTA+AGG | + | chr6_4:73504627-73504646 | Msa0995970:three_prime_UTR | 30.0% | |
| TATCGCTGCTTCGAAATTAA+CGG | + | chr6_4:73498947-73498966 | Msa0995970:CDS | 35.0% | |
| TTACACATTAAGCCTCTGTT+TGG | + | chr6_4:73499036-73499055 | Msa0995970:intron | 35.0% | |
| TAAGCGATTTATCCAAACAG+AGG | - | chr6_4:73499051-73499070 | None:intergenic | 35.0% | |
| GATAAATCGCTTATTTCGCA+TGG | + | chr6_4:73499058-73499077 | Msa0995970:intron | 35.0% | |
| ACTGATAAGCTAACTGATAG+GGG | + | chr6_4:73499333-73499352 | Msa0995970:intron | 35.0% | |
| TAACTGATAGGGGATAAACT+AGG | + | chr6_4:73499343-73499362 | Msa0995970:intron | 35.0% | |
| ATAATGAGGGTGAAAATGAG+AGG | + | chr6_4:73499537-73499556 | Msa0995970:intron | 35.0% | |
| TGAGCTTGTATGTTTGGTAA+TGG | - | chr6_4:73499668-73499687 | None:intergenic | 35.0% | |
| AGCATATGAGCTTGTATGTT+TGG | - | chr6_4:73499674-73499693 | None:intergenic | 35.0% | |
| TCTGCTATAAGTTAGCAGTT+TGG | + | chr6_4:73499702-73499721 | Msa0995970:intron | 35.0% | |
| CACTCCTGTAATTAGTAATG+TGG | - | chr6_4:73499864-73499883 | None:intergenic | 35.0% | |
| GTTGAGTATGGCTCAAATTA+CGG | + | chr6_4:73500179-73500198 | Msa0995970:intron | 35.0% | |
| TTCATAGGGTTATGATTACG+AGG | + | chr6_4:73500288-73500307 | Msa0995970:intron | 35.0% | |
| TCATAGGGTTATGATTACGA+GGG | + | chr6_4:73500289-73500308 | Msa0995970:intron | 35.0% | |
| GAATGAAGCACAAACCAAAT+AGG | - | chr6_4:73500527-73500546 | None:intergenic | 35.0% | |
| TCTTCTTGCTCTTACAATGA+AGG | - | chr6_4:73500560-73500579 | None:intergenic | 35.0% | |
| !! | TGATATGGAAGCATCTAATG+AGG | + | chr6_4:73500835-73500854 | Msa0995970:intron | 35.0% |
| !!! | TAATGAGGAGGTTTTGATTG+AGG | + | chr6_4:73500850-73500869 | Msa0995970:intron | 35.0% |
| CCTATTACTTCAGGAATAAC+AGG | - | chr6_4:73500938-73500957 | None:intergenic | 35.0% | |
| CCTGTTATTCCTGAAGTAAT+AGG | + | chr6_4:73500935-73500954 | Msa0995970:intron | 35.0% | |
| AAAGAAGAGCCTATTACTTC+AGG | - | chr6_4:73500947-73500966 | None:intergenic | 35.0% | |
| GAAGTGTGATAGATAGTGAT+AGG | - | chr6_4:73500989-73501008 | None:intergenic | 35.0% | |
| GATCAATTTCTTCATCAGCA+AGG | - | chr6_4:73501138-73501157 | None:intergenic | 35.0% | |
| GTGTTGTATTCTTCACTACT+TGG | - | chr6_4:73501186-73501205 | None:intergenic | 35.0% | |
| AAAGCAGCCTCACTATATAT+AGG | - | chr6_4:73501229-73501248 | None:intergenic | 35.0% | |
| TCATGATCAGAGTTATGTAG+AGG | + | chr6_4:73501300-73501319 | Msa0995970:intron | 35.0% | |
| AACAAATTGCAACAGTCTAG+AGG | + | chr6_4:73501379-73501398 | Msa0995970:intron | 35.0% | |
| ACAAATTGCAACAGTCTAGA+GGG | + | chr6_4:73501380-73501399 | Msa0995970:intron | 35.0% | |
| !! | TGTTGTTGTTTCGCTGTTAT+TGG | + | chr6_4:73501469-73501488 | Msa0995970:intron | 35.0% |
| CAATAAAGCCGACAAAAAGA+AGG | - | chr6_4:73501550-73501569 | None:intergenic | 35.0% | |
| !! | GGCTTTATTGTATCATGTAG+AGG | + | chr6_4:73501560-73501579 | Msa0995970:intron | 35.0% |
| TAAAGTTGTTGTCATGTGAC+TGG | + | chr6_4:73501603-73501622 | Msa0995970:intron | 35.0% | |
| !! | GTTTTGCCTTAGTTTGACTT+TGG | + | chr6_4:73501805-73501824 | Msa0995970:intron | 35.0% |
| GCTTATTCATTGAAATGGGT+AGG | + | chr6_4:73502038-73502057 | Msa0995970:intron | 35.0% | |
| AATCTACAGCTTAACATGGA+AGG | + | chr6_4:73502085-73502104 | Msa0995970:intron | 35.0% | |
| ACAAATATATAGCGTGCTTC+AGG | - | chr6_4:73502169-73502188 | None:intergenic | 35.0% | |
| ACGCTATATATTTGTGCATG+AGG | + | chr6_4:73502174-73502193 | Msa0995970:CDS | 35.0% | |
| GTAATGTACAAATCCAACCA+AGG | - | chr6_4:73502281-73502300 | None:intergenic | 35.0% | |
| !!! | TGTACATTACCGCTTTGTTT+TGG | + | chr6_4:73502291-73502310 | Msa0995970:CDS | 35.0% |
| AAGGACACAACTTATAGTCT+AGG | + | chr6_4:73502491-73502510 | Msa0995970:intron | 35.0% | |
| CAAATAACCATGTGATGCTA+GGG | - | chr6_4:73503063-73503082 | None:intergenic | 35.0% | |
| TAACAATGATTGACATGTCG+AGG | - | chr6_4:73503093-73503112 | None:intergenic | 35.0% | |
| TAACAATGATTGACATGTCG+AGG | - | chr6_4:73503093-73503112 | None:intergenic | 35.0% | |
| GACTAAACATAAAAAGGGAG+GGG | - | chr6_4:73503670-73503689 | None:intergenic | 35.0% | |
| !!! | TTTTGGTTCTCATATGCAGA+TGG | + | chr6_4:73503824-73503843 | Msa0995970:intron | 35.0% |
| GACTAAACATAAAAAGGGAG+TGG | - | chr6_4:73503670-73503689 | None:intergenic | 35.0% | |
| ! | ATAAACTTTAGAAGGTGACG+TGG | - | chr6_4:73504068-73504087 | None:intergenic | 35.0% |
| AAAACCTCTTCTAGGTTTCA+AGG | + | chr6_4:73504282-73504301 | Msa0995970:intron | 35.0% | |
| AAAACCTTGAAACCTAGAAG+AGG | - | chr6_4:73504289-73504308 | None:intergenic | 35.0% | |
| TCTACACAAATAGCTCAAAG+GGG | - | chr6_4:73504351-73504370 | None:intergenic | 35.0% | |
| GATCTACACAAATAGCTCAA+AGG | - | chr6_4:73504353-73504372 | None:intergenic | 35.0% | |
| TATTTACCGATAGCTCAAAG+GGG | - | chr6_4:73504422-73504441 | None:intergenic | 35.0% | |
| ! | GTTCCATGTTGTAGTACTTT+TGG | + | chr6_4:73504460-73504479 | Msa0995970:intron | 35.0% |
| !! | TTGCCAAAAGTACTACAACA+TGG | - | chr6_4:73504466-73504485 | None:intergenic | 35.0% |
| ATCCAACAGTTACAGATGAA+TGG | - | chr6_4:73504590-73504609 | None:intergenic | 35.0% | |
| GAAAGATAGTAGAGTTTGCA+AGG | - | chr6_4:73504660-73504679 | None:intergenic | 35.0% | |
| !! | TGTTTCTTGCATTGGTTCCA+CGG | - | chr6_4:73498736-73498755 | None:intergenic | 40.0% |
| ! | ACATAACTGTTCCGTTTTGC+AGG | + | chr6_4:73498844-73498863 | Msa0995970:intron | 40.0% |
| ATTTCGAAGCAGCGATAAAC+AGG | - | chr6_4:73498944-73498963 | None:intergenic | 40.0% | |
| !! | CTAGGTGATAGTGGATAAAC+TGG | + | chr6_4:73499361-73499380 | Msa0995970:intron | 40.0% |
| !! | ATTTTAAGCTCTGGTTGGCA+AGG | - | chr6_4:73499728-73499747 | None:intergenic | 40.0% |
| !! | TCGTCATTTTAAGCTCTGGT+TGG | - | chr6_4:73499733-73499752 | None:intergenic | 40.0% |
| !! | ACACTCGTCATTTTAAGCTC+TGG | - | chr6_4:73499737-73499756 | None:intergenic | 40.0% |
| CTGACTTTAAACACACTGTG+AGG | - | chr6_4:73500035-73500054 | None:intergenic | 40.0% | |
| ! | CTCACAGTGTGTTTAAAGTC+AGG | + | chr6_4:73500033-73500052 | Msa0995970:CDS | 40.0% |
| ! | GTGTGTTTAAAGTCAGGACA+TGG | + | chr6_4:73500039-73500058 | Msa0995970:CDS | 40.0% |
| TGGCTCAAATTACGGATAAG+TGG | + | chr6_4:73500187-73500206 | Msa0995970:intron | 40.0% | |
| TAACCCCTAAACTGTACCAT+GGG | - | chr6_4:73500338-73500357 | None:intergenic | 40.0% | |
| TTAACCCCTAAACTGTACCA+TGG | - | chr6_4:73500339-73500358 | None:intergenic | 40.0% | |
| TTCCAATAATGCAATGCTGG+AGG | - | chr6_4:73500402-73500421 | None:intergenic | 40.0% | |
| ATCTCAGACAACAGAACGAT+TGG | - | chr6_4:73500432-73500451 | None:intergenic | 40.0% | |
| !! | TTGTTCACGATTGGCCTATT+TGG | + | chr6_4:73500510-73500529 | Msa0995970:intron | 40.0% |
| !!! | CCTGTTTTTGAATCCCAAGA+GGG | + | chr6_4:73500617-73500636 | Msa0995970:intron | 40.0% |
| ATCAACTACTGATCCTGGTA+GGG | + | chr6_4:73500658-73500677 | Msa0995970:intron | 40.0% | |
| !! | TATGGAAGCATCTAATGAGG+AGG | + | chr6_4:73500838-73500857 | Msa0995970:intron | 40.0% |
| !!! | GGAGGTTTTGATTGAGGATT+TGG | + | chr6_4:73500856-73500875 | Msa0995970:intron | 40.0% |
| GTTACAACATGTGACTACCT+TGG | + | chr6_4:73500904-73500923 | Msa0995970:intron | 40.0% | |
| AATAACAGGATCCAAAGCCA+AGG | - | chr6_4:73500924-73500943 | None:intergenic | 40.0% | |
| TGATAGATAGTGATAGGCTG+AGG | - | chr6_4:73500983-73501002 | None:intergenic | 40.0% | |
| !! | GGTTCTAAGACAGGAAAAAC+AGG | - | chr6_4:73501031-73501050 | None:intergenic | 40.0% |
| !! | GTATTCACAGGTTCTAAGAC+AGG | - | chr6_4:73501040-73501059 | None:intergenic | 40.0% |
| GTCTTAGAACCTGTGAATAC+TGG | + | chr6_4:73501040-73501059 | Msa0995970:intron | 40.0% | |
| AGAACCTGTGAATACTGGAT+TGG | + | chr6_4:73501045-73501064 | Msa0995970:intron | 40.0% | |
| GTTTCCAATCCAGTATTCAC+AGG | - | chr6_4:73501052-73501071 | None:intergenic | 40.0% | |
| AGAGGATGATCATGCTAATC+AGG | + | chr6_4:73501318-73501337 | Msa0995970:intron | 40.0% | |
| AGCCTCTTGCGTAAAAAACA+GGG | + | chr6_4:73501653-73501672 | Msa0995970:intron | 40.0% | |
| !!! | TACCCTGTTTTTTACGCAAG+AGG | - | chr6_4:73501658-73501677 | None:intergenic | 40.0% |
| CTTGCGTAAAAAACAGGGTA+AGG | + | chr6_4:73501658-73501677 | Msa0995970:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr6_4:73501684-73501703 | Msa0995970:intron | 40.0% | |
| TAAGGCAAAACACTCTAAGC+TGG | - | chr6_4:73501796-73501815 | None:intergenic | 40.0% | |
| ! | GTTTTTGCCATGAAACTTCG+TGG | + | chr6_4:73501937-73501956 | Msa0995970:intron | 40.0% |
| GCCTTTAAACTCGTCTGAAT+CGG | + | chr6_4:73501973-73501992 | Msa0995970:intron | 40.0% | |
| TCCGATTCAGACGAGTTTAA+AGG | - | chr6_4:73501977-73501996 | None:intergenic | 40.0% | |
| AAAGGTGAAGCGTAGAGAAA+TGG | + | chr6_4:73502138-73502157 | Msa0995970:CDS | 40.0% | |
| ! | TCTTCTTGACGACTAGTTGA+AGG | - | chr6_4:73502250-73502269 | None:intergenic | 40.0% |
| ACTAGTCGTCAAGAAGATAG+TGG | + | chr6_4:73502253-73502272 | Msa0995970:CDS | 40.0% | |
| CCTCTTCTTCCAAAACAAAG+CGG | - | chr6_4:73502303-73502322 | None:intergenic | 40.0% | |
| !!! | TGTTTTGGAAGAAGAGGTAC+CGG | + | chr6_4:73502306-73502325 | Msa0995970:CDS | 40.0% |
| AGGATTGGGAAAGCTTCTAA+TGG | + | chr6_4:73502375-73502394 | Msa0995970:CDS | 40.0% | |
| TATTGAGCTTATCGCCCAAA+AGG | + | chr6_4:73502402-73502421 | Msa0995970:CDS | 40.0% | |
| ACTTTCCTTGTAGAACTGCA+TGG | + | chr6_4:73502662-73502681 | Msa0995970:intron | 40.0% | |
| CTTTCCTTGTAGAACTGCAT+GGG | + | chr6_4:73502663-73502682 | Msa0995970:intron | 40.0% | |
| TGTCGTGCTAACTGTTCAAA+AGG | + | chr6_4:73502689-73502708 | Msa0995970:CDS | 40.0% | |
| AAGGCTTATACGAGCAGTTA+GGG | - | chr6_4:73502864-73502883 | None:intergenic | 40.0% | |
| TAAGGCTTATACGAGCAGTT+AGG | - | chr6_4:73502865-73502884 | None:intergenic | 40.0% | |
| !! | ATATGTGTCTGCTTTTGAGC+AGG | + | chr6_4:73502923-73502942 | Msa0995970:intron | 40.0% |
| TTTGTAGACATATGCGGTTC+AGG | - | chr6_4:73502953-73502972 | None:intergenic | 40.0% | |
| ATGTTTACCCTAGCATCACA+TGG | + | chr6_4:73503053-73503072 | Msa0995970:intron | 40.0% | |
| GCAAATAACCATGTGATGCT+AGG | - | chr6_4:73503064-73503083 | None:intergenic | 40.0% | |
| TTTCGGTTCTCATATGCAGA+TGG | + | chr6_4:73504142-73504161 | Msa0995970:intron | 40.0% | |
| CATATTCCCCTTTGAGCTAT+CGG | + | chr6_4:73504342-73504361 | Msa0995970:intron | 40.0% | |
| CTCCATTCATCTGTAACTGT+TGG | + | chr6_4:73504585-73504604 | Msa0995970:three_prime_UTR | 40.0% | |
| AAGAAGGGTCAACAAGAATG+CGG | - | chr6_4:73504616-73504635 | None:intergenic | 40.0% | |
| ! | ACGGTGAAATTGGAGCATCT+CGG | - | chr6_4:73498717-73498736 | None:intergenic | 45.0% |
| !! | CATTGGTTCCACGGTGAAAT+TGG | - | chr6_4:73498727-73498746 | None:intergenic | 45.0% |
| !! | GGCGTTGTTGTTTCTTGCAT+TGG | - | chr6_4:73498744-73498763 | None:intergenic | 45.0% |
| CTTTGCGAGTACCTGCAAAA+CGG | - | chr6_4:73498858-73498877 | None:intergenic | 45.0% | |
| GGGGATAAACTAGGTGATAG+TGG | + | chr6_4:73499352-73499371 | Msa0995970:intron | 45.0% | |
| TTTAAACACACTGTGAGGCC+TGG | - | chr6_4:73500030-73500049 | None:intergenic | 45.0% | |
| AAACCCCCATGGTACAGTTT+AGG | + | chr6_4:73500330-73500349 | Msa0995970:intron | 45.0% | |
| AACCCCCATGGTACAGTTTA+GGG | + | chr6_4:73500331-73500350 | Msa0995970:intron | 45.0% | |
| AACCCCTAAACTGTACCATG+GGG | - | chr6_4:73500337-73500356 | None:intergenic | 45.0% | |
| AGCCTCCAGCATTGCATTAT+TGG | + | chr6_4:73500397-73500416 | Msa0995970:intron | 45.0% | |
| !!! | GCCTGTTTTTGAATCCCAAG+AGG | + | chr6_4:73500616-73500635 | Msa0995970:intron | 45.0% |
| CCCTCTTGGGATTCAAAAAC+AGG | - | chr6_4:73500620-73500639 | None:intergenic | 45.0% | |
| ! | TTTTGAATCCCAAGAGGGAG+AGG | + | chr6_4:73500622-73500641 | Msa0995970:intron | 45.0% |
| TTTGAATCCCAAGAGGGAGA+GGG | + | chr6_4:73500623-73500642 | Msa0995970:intron | 45.0% | |
| TCTGCATCAACTACTGATCC+TGG | + | chr6_4:73500653-73500672 | Msa0995970:intron | 45.0% | |
| CATCAACTACTGATCCTGGT+AGG | + | chr6_4:73500657-73500676 | Msa0995970:intron | 45.0% | |
| GGATCTCAATGCTTCTCAGA+AGG | + | chr6_4:73500877-73500896 | Msa0995970:intron | 45.0% | |
| ACATGTGACTACCTTGGCTT+TGG | + | chr6_4:73500910-73500929 | Msa0995970:intron | 45.0% | |
| ATAGTGATAGGCTGAGGCAA+AGG | - | chr6_4:73500977-73500996 | None:intergenic | 45.0% | |
| TACTGCAGCTCAGAACAATG+TGG | + | chr6_4:73501087-73501106 | Msa0995970:intron | 45.0% | |
| !! | TGGCCTTGATGCCAAAGTTT+TGG | + | chr6_4:73501107-73501126 | Msa0995970:intron | 45.0% |
| ! | GGCCTTGATGCCAAAGTTTT+GGG | + | chr6_4:73501108-73501127 | Msa0995970:intron | 45.0% |
| ! | GCCTTGATGCCAAAGTTTTG+GGG | + | chr6_4:73501109-73501128 | Msa0995970:intron | 45.0% |
| TCCCCAAAACTTTGGCATCA+AGG | - | chr6_4:73501113-73501132 | None:intergenic | 45.0% | |
| GAGAGTGAGATCCTTCTCTA+AGG | - | chr6_4:73501164-73501183 | None:intergenic | 45.0% | |
| TTGGGGGGATATTTCATCAG+TGG | + | chr6_4:73501276-73501295 | Msa0995970:intron | 45.0% | |
| !! | GGCTTTGGAAATTCCACTCT+TGG | - | chr6_4:73501434-73501453 | None:intergenic | 45.0% |
| GTTGTTGTCATGTGACTGGA+AGG | + | chr6_4:73501607-73501626 | Msa0995970:intron | 45.0% | |
| !! | TTACGCAAGAGGCTGTTTCT+AGG | - | chr6_4:73501647-73501666 | None:intergenic | 45.0% |
| CAGCCTCTTGCGTAAAAAAC+AGG | + | chr6_4:73501652-73501671 | Msa0995970:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr6_4:73501680-73501699 | Msa0995970:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr6_4:73501683-73501702 | Msa0995970:intron | 45.0% | |
| GATCATGTGTATACGGGTTC+AGG | + | chr6_4:73501834-73501853 | Msa0995970:intron | 45.0% | |
| ATGGCAAAAACCTTGCCGTT+CGG | - | chr6_4:73501928-73501947 | None:intergenic | 45.0% | |
| GTGTGATCCACGAAGTTTCA+TGG | - | chr6_4:73501947-73501966 | None:intergenic | 45.0% | |
| GAAACTTCGTGGATCACACA+TGG | + | chr6_4:73501948-73501967 | Msa0995970:intron | 45.0% | |
| CTTAACATGGAAGGCCCATA+TGG | + | chr6_4:73502094-73502113 | Msa0995970:CDS | 45.0% | |
| ! | CTTTTCTTCCTCTTGCCACT+CGG | - | chr6_4:73502122-73502141 | None:intergenic | 45.0% |
| CATCTCGTCAGCATTTGCAT+TGG | - | chr6_4:73502203-73502222 | None:intergenic | 45.0% | |
| ! | TCAAGAAGATAGTGGTCCCT+TGG | + | chr6_4:73502261-73502280 | Msa0995970:CDS | 45.0% |
| !!! | CCGCTTTGTTTTGGAAGAAG+AGG | + | chr6_4:73502300-73502319 | Msa0995970:CDS | 45.0% |
| ! | TTGGAAGGGGTACATACCAA+TGG | - | chr6_4:73503766-73503785 | None:intergenic | 45.0% |
| AATTCAGTGCAGAATGCGTG+AGG | - | chr6_4:73504314-73504333 | None:intergenic | 45.0% | |
| !! | TACAATAAAAAAAAAAAAAA+GGG | - | chr6_4:73501758-73501777 | None:intergenic | 5.0% |
| !! | ATACAATAAAAAAAAAAAAA+AGG | - | chr6_4:73501759-73501778 | None:intergenic | 5.0% |
| AGCATCTCGGAGTTCATTGC+TGG | - | chr6_4:73498704-73498723 | None:intergenic | 50.0% | |
| GAGATGCTCCAATTTCACCG+TGG | + | chr6_4:73498716-73498735 | Msa0995970:CDS | 50.0% | |
| CCTTCTTCTCTCTGCAACGA+CGG | - | chr6_4:73498765-73498784 | None:intergenic | 50.0% | |
| CACTGTGAGGCCTGGAAATA+AGG | - | chr6_4:73500022-73500041 | None:intergenic | 50.0% | |
| ACTCACTATGCTCGAGTGTC+TGG | - | chr6_4:73500213-73500232 | None:intergenic | 50.0% | |
| AGACACTCGAGCATAGTGAG+TGG | + | chr6_4:73500212-73500231 | Msa0995970:intron | 50.0% | |
| ! | GATCTGAAAGCGCAACGTAG+TGG | + | chr6_4:73500234-73500253 | Msa0995970:intron | 50.0% |
| TATGAATGAGCTGCGCTCGA+AGG | - | chr6_4:73500274-73500293 | None:intergenic | 50.0% | |
| TTCGAGCGCAGCTCATTCAT+AGG | + | chr6_4:73500273-73500292 | Msa0995970:intron | 50.0% | |
| TCGAGCGCAGCTCATTCATA+GGG | + | chr6_4:73500274-73500293 | Msa0995970:intron | 50.0% | |
| TTACGAGGGTTGAGAGAGTG+CGG | + | chr6_4:73500303-73500322 | Msa0995970:intron | 50.0% | |
| ACCCCCATGGTACAGTTTAG+GGG | + | chr6_4:73500332-73500351 | Msa0995970:intron | 50.0% | |
| ACCCCTAAACTGTACCATGG+GGG | - | chr6_4:73500336-73500355 | None:intergenic | 50.0% | |
| ATGCAATGCTGGAGGCTACA+GGG | - | chr6_4:73500394-73500413 | None:intergenic | 50.0% | |
| AATGCAATGCTGGAGGCTAC+AGG | - | chr6_4:73500395-73500414 | None:intergenic | 50.0% | |
| ! | CGTTCTGTTGTCTGAGATGC+AGG | + | chr6_4:73500434-73500453 | Msa0995970:intron | 50.0% |
| GAATTCACCCTCTCCCTCTT+GGG | - | chr6_4:73500633-73500652 | None:intergenic | 50.0% | |
| AGAATTCACCCTCTCCCTCT+TGG | - | chr6_4:73500634-73500653 | None:intergenic | 50.0% | |
| AACTACTGATCCTGGTAGGG+TGG | + | chr6_4:73500661-73500680 | Msa0995970:intron | 50.0% | |
| GCAAGGTCTCCCCAAAACTT+TGG | - | chr6_4:73501121-73501140 | None:intergenic | 50.0% | |
| TGGAAATTCCACTCTTGGCG+CGG | - | chr6_4:73501429-73501448 | None:intergenic | 50.0% | |
| ATCATGTAGAGGGGTAACCG+TGG | + | chr6_4:73501571-73501590 | Msa0995970:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+CGG | - | chr6_4:73501591-73501610 | None:intergenic | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | + | chr6_4:73501613-73501632 | Msa0995970:intron | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | + | chr6_4:73501614-73501633 | Msa0995970:intron | 50.0% | |
| CTTGCCACTCGGATCCATAT+GGG | - | chr6_4:73502111-73502130 | None:intergenic | 50.0% | |
| TCTTGCCACTCGGATCCATA+TGG | - | chr6_4:73502112-73502131 | None:intergenic | 50.0% | |
| ATATGGATCCGAGTGGCAAG+AGG | + | chr6_4:73502111-73502130 | Msa0995970:CDS | 50.0% | |
| CGAGTGGCAAGAGGAAGAAA+AGG | + | chr6_4:73502120-73502139 | Msa0995970:CDS | 50.0% | |
| !! | GATGACAACAGTGCTGACTG+AGG | + | chr6_4:73502219-73502238 | Msa0995970:CDS | 50.0% |
| ! | GAAGATAGTGGTCCCTTGGT+TGG | + | chr6_4:73502265-73502284 | Msa0995970:CDS | 50.0% |
| AATCCTTTCCCCTGGACAAG+AGG | - | chr6_4:73502361-73502380 | None:intergenic | 50.0% | |
| TCTTGTCCAGGGGAAAGGAT+TGG | + | chr6_4:73502360-73502379 | Msa0995970:CDS | 50.0% | |
| CTTGTCCAGGGGAAAGGATT+GGG | + | chr6_4:73502361-73502380 | Msa0995970:CDS | 50.0% | |
| AGCACCCATGCAGTTCTACA+AGG | - | chr6_4:73502670-73502689 | None:intergenic | 50.0% | |
| CAATCTAATGGTGCACCGAG+TGG | - | chr6_4:73503914-73503933 | None:intergenic | 50.0% | |
| CAATCTAATGGTGCACCGAG+TGG | - | chr6_4:73503914-73503933 | None:intergenic | 50.0% | |
| CCGTCGTTGCAGAGAGAAGA+AGG | + | chr6_4:73498762-73498781 | Msa0995970:CDS | 55.0% | |
| !! | GCGCAACGTAGTGGATTGAG+AGG | + | chr6_4:73500243-73500262 | Msa0995970:intron | 55.0% |
| TACTGATCCTGGTAGGGTGG+AGG | + | chr6_4:73500664-73500683 | Msa0995970:intron | 55.0% | |
| GGAAATTCCACTCTTGGCGC+GGG | - | chr6_4:73501428-73501447 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr6_4:73501723-73501742 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr6_4:73501724-73501743 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr6_4:73501728-73501747 | Msa0995970:intron | 55.0% |
| !! | GAGGGTGAGTTTTGGCCGAA+CGG | + | chr6_4:73501910-73501929 | Msa0995970:intron | 55.0% |
| !! | TGAGTTTTGGCCGAACGGCA+AGG | + | chr6_4:73501915-73501934 | Msa0995970:intron | 55.0% |
| AAGGCCCATATGGATCCGAG+TGG | + | chr6_4:73502104-73502123 | Msa0995970:CDS | 55.0% | |
| ACAGTTCGAGCCTCTTGTCC+AGG | + | chr6_4:73502348-73502367 | Msa0995970:CDS | 55.0% | |
| CAGTTCGAGCCTCTTGTCCA+GGG | + | chr6_4:73502349-73502368 | Msa0995970:CDS | 55.0% | |
| AGTTCGAGCCTCTTGTCCAG+GGG | + | chr6_4:73502350-73502369 | Msa0995970:CDS | 55.0% | |
| GCTTTCCCAATCCTTTCCCC+TGG | - | chr6_4:73502369-73502388 | None:intergenic | 55.0% | |
| GATGTCTCCTCCACCCTACC+AGG | - | chr6_4:73500674-73500693 | None:intergenic | 60.0% | |
| ATTCACACCCGCGCCAAGAG+TGG | + | chr6_4:73501418-73501437 | Msa0995970:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr6_4:73501696-73501715 | Msa0995970:intron | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr6_4:73501729-73501748 | Msa0995970:intron | 60.0% |
| GAGCCTCTTGTCCAGGGGAA+AGG | + | chr6_4:73502355-73502374 | Msa0995970:CDS | 60.0% | |
| ! | CGAGGGTTGAGAGAGTGCGG+AGG | + | chr6_4:73500306-73500325 | Msa0995970:intron | 65.0% |
| AGTGCGGAGGCAAACCCCCA+TGG | + | chr6_4:73500319-73500338 | Msa0995970:intron | 65.0% | |
| AGGGGTAACCGTGGCGCAAC+TGG | + | chr6_4:73501580-73501599 | Msa0995970:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr6_4:73501698-73501717 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr6_4:73501711-73501730 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr6_4:73501712-73501731 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr6_4:73501711-73501730 | Msa0995970:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr6_4:73501712-73501731 | Msa0995970:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr6_4:73501713-73501732 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr6_4:73501717-73501736 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr6_4:73501718-73501737 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 73498664 | 73504698 | 73498664 | ID=Msa0995970;Name=Msa0995970 |
| chr6_4 | mRNA | 73498664 | 73504698 | 73498664 | ID=Msa0995970-mRNA-1;Parent=Msa0995970;Name=Msa0995970-mRNA-1;_AED=0.15;_eAED=0.15;_QI=43|0.75|0.88|1|0.75|0.66|9|179|291 |
| chr6_4 | exon | 73498664 | 73498799 | 73498664 | ID=Msa0995970-mRNA-1:exon:13650;Parent=Msa0995970-mRNA-1 |
| chr6_4 | exon | 73498866 | 73498968 | 73498866 | ID=Msa0995970-mRNA-1:exon:13651;Parent=Msa0995970-mRNA-1 |
| chr6_4 | exon | 73500031 | 73500110 | 73500031 | ID=Msa0995970-mRNA-1:exon:13652;Parent=Msa0995970-mRNA-1 |
| chr6_4 | exon | 73502094 | 73502423 | 73502094 | ID=Msa0995970-mRNA-1:exon:13653;Parent=Msa0995970-mRNA-1 |
| chr6_4 | exon | 73502675 | 73502751 | 73502675 | ID=Msa0995970-mRNA-1:exon:13654;Parent=Msa0995970-mRNA-1 |
| chr6_4 | exon | 73503726 | 73503768 | 73503726 | ID=Msa0995970-mRNA-1:exon:13655;Parent=Msa0995970-mRNA-1 |
| chr6_4 | exon | 73503843 | 73503905 | 73503843 | ID=Msa0995970-mRNA-1:exon:13656;Parent=Msa0995970-mRNA-1 |
| chr6_4 | exon | 73504161 | 73504261 | 73504161 | ID=Msa0995970-mRNA-1:exon:13657;Parent=Msa0995970-mRNA-1 |
| chr6_4 | exon | 73504534 | 73504698 | 73504534 | ID=Msa0995970-mRNA-1:exon:13658;Parent=Msa0995970-mRNA-1 |
| chr6_4 | five_prime_UTR | 73498664 | 73498706 | 73498664 | ID=Msa0995970-mRNA-1:five_prime_utr;Parent=Msa0995970-mRNA-1 |
| chr6_4 | CDS | 73498707 | 73498799 | 73498707 | ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1 |
| chr6_4 | CDS | 73498866 | 73498968 | 73498866 | ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1 |
| chr6_4 | CDS | 73500031 | 73500110 | 73500031 | ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1 |
| chr6_4 | CDS | 73502094 | 73502423 | 73502094 | ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1 |
| chr6_4 | CDS | 73502675 | 73502751 | 73502675 | ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1 |
| chr6_4 | CDS | 73503726 | 73503768 | 73503726 | ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1 |
| chr6_4 | CDS | 73503843 | 73503905 | 73503843 | ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1 |
| chr6_4 | CDS | 73504161 | 73504247 | 73504161 | ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1 |
| chr6_4 | three_prime_UTR | 73504248 | 73504261 | 73504248 | ID=Msa0995970-mRNA-1:three_prime_utr;Parent=Msa0995970-mRNA-1 |
| chr6_4 | three_prime_UTR | 73504534 | 73504698 | 73504534 | ID=Msa0995970-mRNA-1:three_prime_utr;Parent=Msa0995970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
