AlfalfaGEDB | Msa0995970

M. sativa cultivar zhongmu-4 / Msa0995970

KEGG: K20794
GO: GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0995970	XP_024642081.1	78.694	291	34	3	1	291	1	263	7.87e-159	453

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0995970	sp\|Q568K5\|NAA40_DANRE	34.583	240	128	5	15	252	4	216	1.82e-28	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0995970	A0A396HG85	78.694	291	34	3	1	291	1	263	3.76e-159	453

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TFs/TRs:

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Gene ID	Type	Classification
Msa0995970	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0995970	MtrunA17_Chr6g0479551	78.694	291	34	3	1	291	1	263	7.24e-163	453

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0995970	AT1G18335.1	53.390	236	102	2	29	263	33	261	1.57e-75	232
Msa0995970	AT1G18335.3	53.165	237	103	2	29	264	33	262	2.30e-75	232
Msa0995970	AT1G18335.2	53.165	237	103	2	29	264	33	262	2.30e-75	232

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Find 65 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGAAGCGTAGAGAAA+TGG	0.460189	6_4:+73502138	Msa0995970:CDS
AAGAAGGGTCAACAAGAATG+CGG	0.682033	6_4:-73504613	None:intergenic
AAGGCCCATATGGATCCGAG+TGG	0.763208	6_4:+73502104	Msa0995970:CDS
AATATATTGTTTAACAGAAG+AGG	0.479814	6_4:-73500073	None:intergenic
AATCCTTTCCCCTGGACAAG+AGG	0.563832	6_4:-73502358	None:intergenic
AATCTACAGCTTAACATGGA+AGG	0.595080	6_4:+73502085	Msa0995970:intron
ACAAATATATAGCGTGCTTC+AGG	0.453405	6_4:-73502166	None:intergenic
ACAGTTCGAGCCTCTTGTCC+AGG	0.456463	6_4:+73502348	Msa0995970:CDS
ACCAATGGATAAAATTTAGA+AGG	0.404850	6_4:-73503748	None:intergenic
ACCCTTCTTATCAATACTTA+AGG	0.354468	6_4:+73504627	Msa0995970:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAAAACACTCGTGAATT+AGG	-	chr6_4:73498819-73498838	None:intergenic	30.0%
CAAATCAGCATATAGCATAA+AGG	+	chr6_4:73498901-73498920	Msa0995970:CDS	30.0%
GATAAACAGGAAAATAAGTG+AGG	-	chr6_4:73498931-73498950	None:intergenic	30.0%
AGGAGCTTATGAAAATAAGT+TGG	+	chr6_4:73499166-73499185	Msa0995970:intron	30.0%
CCTAAAACTTTGTTACTGTT+TGG	+	chr6_4:73499294-73499313	Msa0995970:intron	30.0%
TAACTGATAAGCTAACTGAT+AGG	+	chr6_4:73499331-73499350	Msa0995970:intron	30.0%
AACTGATAAGCTAACTGATA+GGG	+	chr6_4:73499332-73499351	Msa0995970:intron	30.0%
CTAACCACATTACTAATTAC+AGG	+	chr6_4:73499857-73499876	Msa0995970:intron	30.0%
CTGGAAATAAGGTCAAAATT+AGG	-	chr6_4:73500011-73500030	None:intergenic	30.0%
CAAGAACAGACAATGAAATT+CGG	-	chr6_4:73500469-73500488	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	73498664	73504698	73498664	ID=Msa0995970;Name=Msa0995970
chr6_4	mRNA	73498664	73504698	73498664	ID=Msa0995970-mRNA-1;Parent=Msa0995970;Name=Msa0995970-mRNA-1;_AED=0.15;_eAED=0.15;_QI=43\|0.75\|0.88\|1\|0.75\|0.66\|9\|179\|291
chr6_4	exon	73498664	73498799	73498664	ID=Msa0995970-mRNA-1:exon:13650;Parent=Msa0995970-mRNA-1
chr6_4	exon	73498866	73498968	73498866	ID=Msa0995970-mRNA-1:exon:13651;Parent=Msa0995970-mRNA-1
chr6_4	exon	73500031	73500110	73500031	ID=Msa0995970-mRNA-1:exon:13652;Parent=Msa0995970-mRNA-1
chr6_4	exon	73502094	73502423	73502094	ID=Msa0995970-mRNA-1:exon:13653;Parent=Msa0995970-mRNA-1
chr6_4	exon	73502675	73502751	73502675	ID=Msa0995970-mRNA-1:exon:13654;Parent=Msa0995970-mRNA-1
chr6_4	exon	73503726	73503768	73503726	ID=Msa0995970-mRNA-1:exon:13655;Parent=Msa0995970-mRNA-1
chr6_4	exon	73503843	73503905	73503843	ID=Msa0995970-mRNA-1:exon:13656;Parent=Msa0995970-mRNA-1
chr6_4	exon	73504161	73504261	73504161	ID=Msa0995970-mRNA-1:exon:13657;Parent=Msa0995970-mRNA-1
chr6_4	exon	73504534	73504698	73504534	ID=Msa0995970-mRNA-1:exon:13658;Parent=Msa0995970-mRNA-1
chr6_4	five_prime_UTR	73498664	73498706	73498664	ID=Msa0995970-mRNA-1:five_prime_utr;Parent=Msa0995970-mRNA-1
chr6_4	CDS	73498707	73498799	73498707	ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1
chr6_4	CDS	73498866	73498968	73498866	ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1
chr6_4	CDS	73500031	73500110	73500031	ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1
chr6_4	CDS	73502094	73502423	73502094	ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1
chr6_4	CDS	73502675	73502751	73502675	ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1
chr6_4	CDS	73503726	73503768	73503726	ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1
chr6_4	CDS	73503843	73503905	73503843	ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1
chr6_4	CDS	73504161	73504247	73504161	ID=Msa0995970-mRNA-1:cds;Parent=Msa0995970-mRNA-1
chr6_4	three_prime_UTR	73504248	73504261	73504248	ID=Msa0995970-mRNA-1:three_prime_utr;Parent=Msa0995970-mRNA-1
chr6_4	three_prime_UTR	73504534	73504698	73504534	ID=Msa0995970-mRNA-1:three_prime_utr;Parent=Msa0995970-mRNA-1

Gene Sequence

>Msa0995970

ATGAACTCCGAGATGCTCCAATTTCACCGTGGAACCAATGCAAGAAACAACAACGCCGTCGTTGCAGAGAGAAGAAGGTTAACACGCAGCGAAGTACTCGCAAAGAAGAACGCAAATGAACAACTCATCAAATCAGCATATAGCATAAAGGATCACCTCACTTATTTTCCTGTTTATCGCTGCTTCGAAATTAACGGCCTCACAGTGTGTTTAAAGTCAGGACATGGCACTAAACTTTCCTCTTCTGTTAAACAATATATTCAGAAACTTCTTAAGCTTAACATGGAAGGCCCATATGGATCCGAGTGGCAAGAGGAAGAAAAGGTGAAGCGTAGAGAAATGGTTGATCCTGAAGCACGCTATATATTTGTGCATGAGGTTACCAATGCAAATGCTGACGAGATGACAACAGTGCTGACTGAGGAAGATCCTTCAACTAGTCGTCAAGAAGATAGTGGTCCCTTGGTTGGATTTGTACATTACCGCTTTGTTTTGGAAGAAGAGGTACCGGTACTTTATGTGTATGAACTACAGTTCGAGCCTCTTGTCCAGGGGAAAGGATTGGGAAAGCTTCTAATGGAACTTATTGAGCTTATCGCCCAAAAGAACTGCATGGGTGCTGTCGTGCTAACTGTTCAAAAGGCGAACATATCAGCTATGAATTTTTACACAAGTAAACTAAGATATATCATATCAGCTACGTCACCTTCTAAATTTTATCCATTGATGGAGAAGAGTTATGAAATTCTTTGCAGAATATTTAATGATGAAGCTAAAACTATTTTTGAGATGGAGAAGAGTTATGAAATTCTTTGCAGAATATTTAATGATGAAGCTAAAACTATTTTTGAGGTAAACCACTCGGTGCACCATTAG

Protein sequence

>Msa0995970

MNSEMLQFHRGTNARNNNAVVAERRRLTRSEVLAKKNANEQLIKSAYSIKDHLTYFPVYRCFEINGLTVCLKSGHGTKLSSSVKQYIQKLLKLNMEGPYGSEWQEEEKVKRREMVDPEARYIFVHEVTNANADEMTTVLTEEDPSTSRQEDSGPLVGFVHYRFVLEEEVPVLYVYELQFEPLVQGKGLGKLLMELIELIAQKNCMGAVVLTVQKANISAMNFYTSKLRYIISATSPSKFYPLMEKSYEILCRIFNDEAKTIFEMEKSYEILCRIFNDEAKTIFEVNHSVHH*