AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0996310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0996310 MtrunA17_Chr6g0481091 99.163 239 2 0 1 239 1 239 0.0 499
Msa0996310 MtrunA17_Chr3g0109821 75.309 162 39 1 1 161 1 162 1.14e-89 278
Msa0996310 MtrunA17_Chr5g0433781 74.375 160 41 0 1 160 1 160 9.99e-86 267
Msa0996310 MtrunA17_Chr2g0309891 71.519 158 44 1 1 157 1 158 2.94e-83 252
Msa0996310 MtrunA17_Chr5g0400461 63.068 176 55 2 1 169 1 173 5.30e-75 230
Msa0996310 MtrunA17_Chr4g0054791 63.750 160 55 1 1 157 1 160 5.21e-70 217
Msa0996310 MtrunA17_Chr3g0130101 47.805 205 98 2 8 205 9 211 3.61e-61 196
Msa0996310 MtrunA17_Chr1g0201021 59.006 161 66 0 8 168 21 181 5.51e-61 201
Msa0996310 MtrunA17_Chr3g0128151 47.748 222 107 2 1 218 17 233 1.17e-60 200
Msa0996310 MtrunA17_Chr4g0017921 57.051 156 63 2 5 159 7 159 4.52e-60 192
Msa0996310 MtrunA17_Chr5g0417791 50.000 188 87 3 6 189 3 187 8.35e-60 189
Msa0996310 MtrunA17_Chr4g0018391 52.381 168 75 3 6 170 7 172 1.08e-59 191
Msa0996310 MtrunA17_Chr1g0200561 57.237 152 62 2 6 156 19 168 1.57e-59 191
Msa0996310 MtrunA17_Chr3g0128111 46.890 209 103 2 9 217 45 245 6.66e-59 186
Msa0996310 MtrunA17_Chr5g0428991 46.352 233 111 3 6 238 25 243 9.55e-59 196
Msa0996310 MtrunA17_Chr4g0056541 53.289 152 68 2 6 156 7 156 1.59e-58 189
Msa0996310 MtrunA17_Chr8g0372121 48.045 179 90 2 6 183 6 182 1.75e-58 187
Msa0996310 MtrunA17_Chr2g0309331 57.051 156 61 4 4 156 8 160 2.31e-58 188
Msa0996310 MtrunA17_Chr5g0405211 55.263 152 65 2 6 156 8 157 6.32e-58 187
Msa0996310 MtrunA17_Chr4g0042561 45.729 199 98 5 6 200 9 201 9.37e-58 184
Msa0996310 MtrunA17_Chr8g0364791 54.902 153 69 0 6 158 6 158 1.15e-57 189
Msa0996310 MtrunA17_Chr3g0130731 54.487 156 65 3 6 158 7 159 9.62e-57 182
Msa0996310 MtrunA17_Chr5g0398971 54.902 153 66 3 6 156 7 158 1.25e-56 184
Msa0996310 MtrunA17_Chr1g0197351 58.025 162 62 1 4 159 40 201 1.52e-56 187
Msa0996310 MtrunA17_Chr8g0346001 47.126 174 82 2 6 169 15 188 1.76e-56 186
Msa0996310 MtrunA17_Chr2g0318081 51.592 157 74 1 1 157 11 165 1.89e-56 183
Msa0996310 MtrunA17_Chr6g0484441 47.739 199 94 5 6 200 5 197 3.99e-56 182
Msa0996310 MtrunA17_Chr8g0359921 52.830 159 71 2 1 157 9 165 7.84e-56 181
Msa0996310 MtrunA17_Chr1g0197361 57.237 152 63 2 8 158 10 160 1.08e-55 187
Msa0996310 MtrunA17_Chr7g0252971 44.271 192 81 4 4 182 6 184 2.34e-55 180
Msa0996310 MtrunA17_Chr8g0384201 52.941 153 72 0 6 158 6 158 5.39e-55 183
Msa0996310 MtrunA17_Chr2g0316971 56.051 157 63 3 6 158 23 177 1.27e-54 179
Msa0996310 MtrunA17_Chr3g0092671 57.237 152 63 2 8 158 7 157 1.31e-54 183
Msa0996310 MtrunA17_Chr2g0318101 48.889 180 77 3 6 172 15 192 3.16e-54 177
Msa0996310 MtrunA17_Chr3g0124761 46.939 196 90 5 2 194 3 187 3.20e-54 176
Msa0996310 MtrunA17_Chr2g0326361 49.405 168 77 3 6 167 14 179 3.83e-54 176
Msa0996310 MtrunA17_Chr8g0384721 53.503 157 66 4 6 158 7 160 3.85e-54 175
Msa0996310 MtrunA17_Chr6g0453451 52.147 163 74 2 6 166 20 180 2.05e-53 174
Msa0996310 MtrunA17_Chr4g0060931 53.595 153 67 2 6 156 17 167 2.52e-53 176
Msa0996310 MtrunA17_Chr3g0139331 54.194 155 65 3 6 158 11 161 9.41e-53 174
Msa0996310 MtrunA17_Chr1g0147421 54.487 156 64 4 6 158 27 178 9.68e-53 174
Msa0996310 MtrunA17_Chr6g0461661 49.689 161 75 3 3 159 15 173 1.52e-52 174
Msa0996310 MtrunA17_Chr1g0183741 41.395 215 116 4 4 214 8 216 1.80e-52 171
Msa0996310 MtrunA17_Chr3g0091921 53.896 154 67 2 6 157 16 167 4.95e-52 171
Msa0996310 MtrunA17_Chr7g0263931 49.080 163 75 3 2 158 7 167 5.80e-52 171
Msa0996310 MtrunA17_Chr6g0453131 48.235 170 76 3 6 165 15 182 1.72e-51 171
Msa0996310 MtrunA17_Chr4g0076731 52.288 153 68 3 8 159 56 204 1.98e-51 172
Msa0996310 MtrunA17_Chr7g0253011 47.222 180 84 4 4 177 15 189 2.08e-51 171
Msa0996310 MtrunA17_Chr7g0261411 52.941 153 64 3 4 154 8 154 4.41e-51 167
Msa0996310 MtrunA17_Chr4g0047841 47.159 176 66 3 6 156 15 188 8.34e-51 169
Msa0996310 MtrunA17_Chr7g0214071 53.548 155 63 3 4 156 13 160 2.22e-50 165
Msa0996310 MtrunA17_Chr3g0144271 60.294 136 49 4 5 137 22 155 8.14e-50 168
Msa0996310 MtrunA17_Chr2g0312321 47.953 171 84 3 1 170 6 172 1.96e-49 164
Msa0996310 MtrunA17_Chr8g0361731 42.105 190 96 4 8 185 16 203 3.19e-49 166
Msa0996310 MtrunA17_Chr5g0417001 48.428 159 70 3 8 156 16 172 3.85e-49 166
Msa0996310 MtrunA17_Chr7g0217721 56.489 131 55 1 4 134 17 145 8.82e-47 158
Msa0996310 MtrunA17_Chr2g0311651 46.061 165 73 3 8 157 24 187 2.60e-46 156
Msa0996310 MtrunA17_Chr7g0217711 54.962 131 57 1 4 134 17 145 5.34e-45 149
Msa0996310 MtrunA17_Chr4g0038751 44.242 165 82 3 8 169 17 174 2.11e-44 150
Msa0996310 MtrunA17_Chr2g0311661 44.848 165 75 3 8 157 23 186 4.25e-44 150
Msa0996310 MtrunA17_Chr8g0345671 51.656 151 64 5 6 153 11 155 9.52e-44 151
Msa0996310 MtrunA17_Chr5g0442771 45.963 161 73 4 8 156 20 178 2.23e-43 148
Msa0996310 MtrunA17_Chr8g0345691 50.331 151 66 5 6 153 12 156 3.65e-42 148
Msa0996310 MtrunA17_Chr8g0385991 44.785 163 77 4 6 159 14 172 1.48e-38 134
Msa0996310 MtrunA17_Chr2g0321741 49.242 132 58 3 26 157 12 134 7.57e-38 135
Msa0996310 MtrunA17_Chr2g0321631 37.037 216 118 7 7 209 5 215 1.06e-37 132
Msa0996310 MtrunA17_Chr8g0345711 48.571 140 67 4 6 142 12 149 1.58e-37 129
Msa0996310 MtrunA17_Chr4g0026141 41.875 160 86 4 6 158 5 164 4.21e-36 128
Msa0996310 MtrunA17_Chr8g0345731 42.949 156 77 4 6 156 24 172 8.47e-36 125
Msa0996310 MtrunA17_Chr7g0266701 41.718 163 85 6 5 157 3 165 6.09e-35 125
Msa0996310 MtrunA17_Chr3g0131911 42.236 161 79 3 6 156 14 170 1.50e-34 124
Msa0996310 MtrunA17_Chr3g0113001 55.556 99 41 1 61 156 18 116 3.17e-31 116
Msa0996310 MtrunA17_Chr8g0345721 38.122 181 71 7 1 144 26 202 2.47e-29 109
Msa0996310 MtrunA17_Chr4g0050701 36.875 160 83 4 6 157 11 160 2.92e-29 108
Msa0996310 MtrunA17_Chr8g0345741 36.585 164 91 4 17 177 2 155 7.43e-29 106
Msa0996310 MtrunA17_Chr3g0113031 54.444 90 37 1 71 156 3 92 2.74e-27 105
Msa0996310 MtrunA17_Chr8g0345701 40.541 148 68 5 2 132 3 147 1.04e-26 101
Msa0996310 MtrunA17_Chr7g0243371 47.619 84 42 2 56 137 12 95 3.74e-22 88.2
Msa0996310 MtrunA17_Chr8g0384351 38.065 155 74 6 2 156 6 138 4.22e-22 89.7
Msa0996310 MtrunA17_Chr7g0251651 34.437 151 93 4 6 155 18 163 1.75e-21 88.6
Msa0996310 MtrunA17_Chr7g0251661 32.692 156 98 4 2 153 6 158 3.11e-18 79.0
Msa0996310 MtrunA17_Chr3g0130321 34.848 132 76 4 4 133 5 128 3.47e-18 80.1
Msa0996310 MtrunA17_Chr7g0251671 34.884 129 76 4 6 131 10 133 6.63e-17 75.5
Msa0996310 MtrunA17_Chr3g0113011 52.083 48 23 0 4 51 17 64 5.30e-12 59.7
Msa0996310 MtrunA17_Chr7g0274971 33.117 154 89 9 12 157 11 158 6.32e-12 63.2
Msa0996310 MtrunA17_Chr1g0194791 57.778 45 18 1 8 51 48 92 9.84e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0996310 AT3G17730.1 75.934 241 44 5 1 228 1 240 2.25e-130 368
Msa0996310 AT1G65910.1 56.667 240 85 3 1 221 1 240 1.95e-92 284
Msa0996310 AT5G17260.1 59.244 238 69 6 1 217 1 231 5.15e-91 276
Msa0996310 AT3G03200.1 77.707 157 34 1 1 156 1 157 2.05e-88 270
Msa0996310 AT1G54330.1 72.611 157 40 1 1 157 1 154 2.63e-79 241
Msa0996310 AT5G46590.1 64.103 156 54 2 6 159 6 161 7.16e-71 219
Msa0996310 AT4G17980.1 62.733 161 56 2 1 157 1 161 9.67e-70 215
Msa0996310 AT4G17980.2 62.733 161 56 2 1 157 1 161 1.95e-69 215
Msa0996310 AT5G46590.2 67.391 138 40 2 6 142 6 139 2.22e-66 207
Msa0996310 AT3G10480.2 61.635 159 61 0 1 159 22 180 2.40e-66 212
Msa0996310 AT3G10490.1 63.226 155 56 1 6 159 27 181 6.03e-66 204
Msa0996310 AT3G10480.1 61.875 160 60 1 1 159 22 181 1.29e-65 210
Msa0996310 AT1G32510.1 55.080 187 70 3 6 184 6 186 3.09e-65 204
Msa0996310 AT3G10490.2 62.420 157 58 1 4 159 25 181 3.62e-64 206
Msa0996310 AT3G10500.1 58.929 168 67 2 2 168 5 171 9.96e-63 205
Msa0996310 AT5G04410.1 57.485 167 71 0 2 168 5 171 1.07e-62 205
Msa0996310 AT4G35580.3 57.407 162 64 1 6 162 9 170 5.82e-62 202
Msa0996310 AT4G35580.1 57.407 162 64 1 6 162 9 170 5.97e-62 202
Msa0996310 AT4G35580.2 57.407 162 64 1 6 162 9 170 6.07e-62 202
Msa0996310 AT1G33060.1 58.333 156 65 0 1 156 19 174 2.01e-61 204
Msa0996310 AT1G33060.2 58.333 156 65 0 1 156 19 174 2.09e-61 204
Msa0996310 AT1G69490.1 47.644 191 94 3 6 192 9 197 3.28e-61 193
Msa0996310 AT4G10350.1 49.727 183 91 1 5 186 8 190 1.38e-60 194
Msa0996310 AT3G10480.3 52.332 193 58 2 1 159 22 214 1.42e-60 199
Msa0996310 AT5G64060.1 53.571 168 78 0 1 168 1 168 3.84e-59 191
Msa0996310 AT1G12260.2 53.947 152 67 2 6 156 7 156 1.01e-58 189
Msa0996310 AT1G71930.2 48.500 200 94 5 5 200 8 202 1.10e-58 189
Msa0996310 AT1G71930.1 48.500 200 94 5 5 200 8 202 1.10e-58 189
Msa0996310 AT1G62700.1 55.263 152 65 2 6 156 7 156 2.00e-58 190
Msa0996310 AT1G62700.2 55.263 152 65 2 6 156 7 156 2.00e-58 190
Msa0996310 AT1G12260.1 53.947 152 67 2 6 156 7 156 2.36e-58 190
Msa0996310 AT1G33280.1 54.487 156 67 2 5 159 7 159 3.47e-58 187
Msa0996310 AT5G09330.5 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0996310 AT5G09330.2 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0996310 AT5G09330.4 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0996310 AT5G09330.3 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0996310 AT5G09330.1 57.595 158 67 0 1 158 1 158 3.55e-58 192
Msa0996310 AT2G24430.2 59.740 154 57 3 5 156 15 165 5.42e-58 186
Msa0996310 AT2G24430.1 59.740 154 57 3 5 156 15 165 5.42e-58 186
Msa0996310 AT2G18060.3 54.430 158 67 3 1 156 4 158 7.69e-58 187
Msa0996310 AT2G18060.1 54.430 158 67 3 1 156 4 158 7.69e-58 187
Msa0996310 AT3G61910.1 43.939 198 97 2 6 189 11 208 1.72e-57 186
Msa0996310 AT4G36160.1 55.556 153 63 3 6 156 10 159 1.98e-57 187
Msa0996310 AT4G36160.3 55.556 153 63 3 6 156 10 159 1.98e-57 187
Msa0996310 AT4G36160.2 55.556 153 63 3 6 156 14 163 2.21e-57 187
Msa0996310 AT5G24590.2 47.895 190 97 2 1 188 8 197 2.55e-57 189
Msa0996310 AT1G34190.1 55.280 161 72 0 8 168 18 178 5.63e-57 190
Msa0996310 AT1G79580.3 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0996310 AT1G79580.5 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0996310 AT1G79580.4 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0996310 AT1G79580.2 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0996310 AT1G79580.1 56.774 155 62 3 4 156 15 166 6.53e-57 185
Msa0996310 AT5G66300.1 56.494 154 63 3 5 156 11 162 7.25e-57 183
Msa0996310 AT1G76420.1 52.907 172 76 3 5 174 21 189 7.77e-57 184
Msa0996310 AT2G46770.1 44.843 223 98 7 6 207 16 234 1.06e-56 185
Msa0996310 AT5G39610.1 54.777 157 67 2 4 158 18 172 2.62e-56 181
Msa0996310 AT1G34180.3 54.037 161 74 0 8 168 18 178 2.82e-56 186
Msa0996310 AT1G61110.1 51.515 165 65 3 6 157 16 178 8.38e-56 181
Msa0996310 AT3G18400.1 54.605 152 66 2 5 156 4 152 8.99e-56 181
Msa0996310 AT5G07680.2 56.129 155 64 2 6 158 3 155 1.06e-55 181
Msa0996310 AT1G34180.1 54.037 161 74 0 8 168 18 178 1.26e-55 187
Msa0996310 AT5G07680.1 56.129 155 64 2 6 158 17 169 1.42e-55 181
Msa0996310 AT4G27410.2 49.359 156 77 1 1 156 9 162 5.27e-55 178
Msa0996310 AT3G15500.1 50.641 156 75 1 1 156 9 162 5.29e-55 179
Msa0996310 AT3G15170.1 55.000 160 66 3 6 161 20 177 6.12e-55 179
Msa0996310 AT3G04070.2 49.091 165 70 3 5 157 9 171 1.08e-54 179
Msa0996310 AT1G32770.1 50.617 162 69 2 6 156 16 177 1.50e-54 179
Msa0996310 AT5G61430.1 54.839 155 66 2 6 158 16 168 1.70e-54 178
Msa0996310 AT3G29035.1 54.902 153 65 2 4 154 22 172 4.89e-54 176
Msa0996310 AT1G52890.1 50.000 156 76 1 1 156 9 162 6.23e-54 176
Msa0996310 AT3G04070.1 46.667 180 66 4 5 156 9 186 1.09e-53 177
Msa0996310 AT3G12977.1 47.674 172 87 2 1 171 13 182 1.49e-53 174
Msa0996310 AT1G01720.1 52.866 157 67 3 6 158 7 160 1.67e-53 174
Msa0996310 AT5G62380.2 50.000 156 75 2 2 156 3 156 2.23e-53 176
Msa0996310 AT5G62380.1 50.000 156 75 2 2 156 3 156 2.23e-53 176
Msa0996310 AT3G49530.2 50.955 157 76 1 1 156 8 164 2.95e-53 177
Msa0996310 AT5G08790.1 51.235 162 71 3 2 158 3 161 4.17e-53 173
Msa0996310 AT1G34180.4 50.289 173 74 1 8 168 18 190 4.97e-53 177
Msa0996310 AT3G49530.1 50.955 157 76 1 1 156 8 164 5.77e-53 177
Msa0996310 AT1G34180.2 50.289 173 74 1 8 168 18 190 1.80e-52 178
Msa0996310 AT1G77450.1 39.167 240 132 6 6 237 10 243 2.88e-52 170
Msa0996310 AT5G18270.2 54.140 157 67 3 4 157 19 173 3.57e-52 172
Msa0996310 AT5G53950.1 53.125 160 69 3 6 161 17 174 6.27e-52 172
Msa0996310 AT5G18270.1 53.503 157 68 3 4 157 19 173 8.51e-52 171
Msa0996310 AT2G02450.1 50.980 153 70 3 8 159 53 201 1.53e-51 172
Msa0996310 AT4G27410.3 45.614 171 78 2 1 156 9 179 1.74e-51 170
Msa0996310 AT2G02450.2 50.980 153 70 3 8 159 53 201 2.03e-51 172
Msa0996310 AT5G63790.1 39.914 233 116 6 4 222 48 270 2.46e-51 169
Msa0996310 AT5G63790.2 39.914 233 116 6 4 222 58 280 2.66e-51 169
Msa0996310 AT1G32870.2 54.217 166 72 2 5 168 9 172 8.55e-51 173
Msa0996310 AT1G56010.2 47.458 177 81 5 1 170 14 185 1.08e-50 168
Msa0996310 AT1G32870.1 54.217 166 72 2 5 168 9 172 1.24e-50 173
Msa0996310 AT3G15510.1 47.953 171 74 3 10 167 21 189 1.34e-50 169
Msa0996310 AT1G32870.3 54.217 166 72 2 5 168 45 208 1.97e-50 173
Msa0996310 AT2G33480.1 50.993 151 69 1 6 156 15 160 5.66e-50 164
Msa0996310 AT3G04060.1 52.532 158 70 3 4 158 18 173 6.90e-50 166
Msa0996310 AT5G22290.1 50.685 146 65 2 8 153 23 161 1.47e-49 166
Msa0996310 AT1G26870.1 42.932 191 96 3 6 185 16 204 3.69e-49 166
Msa0996310 AT5G39820.1 41.818 220 96 6 8 203 22 233 4.11e-49 164
Msa0996310 AT2G33480.2 50.331 151 68 2 6 156 15 158 3.15e-48 160
Msa0996310 AT3G44290.2 51.370 146 63 3 8 153 16 153 1.18e-47 157
Msa0996310 AT2G27300.1 49.032 155 71 2 1 155 9 155 1.19e-47 160
Msa0996310 AT5G13180.1 51.634 153 66 3 6 156 14 160 4.68e-47 156
Msa0996310 AT3G44290.1 51.370 146 63 3 8 153 16 153 7.49e-47 158
Msa0996310 AT4G28530.1 50.000 170 59 6 6 156 10 172 1.52e-46 158
Msa0996310 AT2G17040.1 42.564 195 93 6 8 190 8 195 1.76e-46 155
Msa0996310 AT2G43000.1 48.667 150 74 2 8 156 20 167 3.46e-46 155
Msa0996310 AT1G52880.1 50.625 160 65 4 10 157 21 178 6.49e-46 155
Msa0996310 AT5G04395.1 50.000 142 57 2 6 133 28 169 3.84e-42 142
Msa0996310 AT3G12977.2 51.818 110 52 1 63 171 20 129 1.09e-36 129
Msa0996310 AT3G12910.1 43.373 166 74 6 8 156 23 185 2.51e-35 127
Msa0996310 AT5G61430.2 58.163 98 39 1 63 158 8 105 6.35e-35 125
Msa0996310 AT4G10350.2 45.968 124 67 0 63 186 20 143 9.87e-35 126
Msa0996310 AT1G56010.1 51.754 114 46 3 63 170 8 118 2.23e-33 121
Msa0996310 AT4G01550.1 41.146 192 97 8 9 194 7 188 4.99e-32 122
Msa0996310 AT5G22380.1 39.490 157 88 4 9 158 8 164 3.31e-31 115
Msa0996310 AT4G01520.1 43.939 132 69 3 7 133 5 136 8.02e-31 115
Msa0996310 AT3G44350.2 37.975 158 93 4 6 158 5 162 4.92e-30 112
Msa0996310 AT2G33480.3 51.042 96 47 0 61 156 8 103 6.64e-30 111
Msa0996310 AT4G01540.3 43.077 130 69 3 9 133 7 136 9.64e-29 112
Msa0996310 AT4G01540.4 33.690 187 103 6 9 190 7 177 1.32e-28 111
Msa0996310 AT4G01540.2 43.077 130 69 3 9 133 7 136 1.56e-28 112
Msa0996310 AT4G01540.1 43.077 130 69 3 9 133 7 136 1.73e-28 112
Msa0996310 AT4G28530.2 50.909 110 34 3 6 98 10 116 3.87e-28 109
Msa0996310 AT3G10490.4 62.500 80 29 1 81 159 2 81 3.80e-27 107
Msa0996310 AT3G10490.3 62.500 80 29 1 81 159 2 81 3.80e-27 107
Msa0996310 AT3G44350.1 41.985 131 72 3 6 132 5 135 6.03e-27 102
Msa0996310 AT3G04420.2 36.774 155 91 3 7 159 4 153 1.21e-26 104
Msa0996310 AT1G02230.1 40.789 152 78 7 7 153 4 148 1.28e-26 105
Msa0996310 AT3G04420.1 36.774 155 91 3 7 159 4 153 2.80e-26 104
Msa0996310 AT5G64530.1 33.702 181 88 6 4 168 1 165 4.57e-26 100
Msa0996310 AT5G64530.2 39.552 134 65 4 4 135 1 120 1.71e-25 98.2
Msa0996310 AT1G02250.1 36.601 153 83 5 7 153 4 148 1.94e-23 97.4
Msa0996310 AT1G01010.1 38.462 156 77 5 9 153 6 153 3.78e-23 97.4
Msa0996310 AT3G56530.1 31.373 153 100 3 4 154 50 199 2.29e-22 93.6
Msa0996310 AT1G02220.1 35.484 155 90 4 7 159 4 150 9.61e-22 93.2
Msa0996310 AT2G43000.2 46.591 88 46 1 70 156 2 89 1.32e-20 86.7
Msa0996310 AT3G55210.1 31.481 162 93 4 6 154 11 167 1.89e-20 87.8
Msa0996310 AT2G18060.2 51.389 72 31 2 86 156 2 70 7.92e-19 83.6
Msa0996310 AT5G22290.2 50.746 67 27 1 87 153 2 62 1.82e-16 76.3
Msa0996310 AT5G50820.1 33.333 132 74 4 6 133 17 138 2.42e-16 75.1
Msa0996310 AT5G14000.2 31.538 130 83 2 6 133 15 140 3.57e-15 70.9
Msa0996310 AT5G14000.1 29.032 155 101 3 6 158 15 162 5.90e-15 71.6
Msa0996310 AT3G04430.1 33.835 133 74 5 12 132 6 136 5.71e-14 68.6

Find 73 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTTTACCACCAGGTTTC+AGG 0.172743 6_4:-74291193 Msa0996310:CDS
TTTGGTGGGTGGACTTGTTT+AGG 0.187045 6_4:-74286439 Msa0996310:three_prime_UTR
TTCACACTCATTATTGATTA+TGG 0.195935 6_4:+74286954 None:intergenic
TACTTATAAATTGGTGATAA+TGG 0.197648 6_4:-74286477 Msa0996310:three_prime_UTR
GATGATGCTCCTAGTATTTC+TGG 0.199026 6_4:+74286922 None:intergenic
TTATTATTATACTTATAAAT+TGG 0.252215 6_4:-74286486 Msa0996310:three_prime_UTR
CTATTTGTTCTAAATCCATT+AGG 0.266100 6_4:+74290232 None:intergenic
TTGGTGGGTGGACTTGTTTA+GGG 0.291301 6_4:-74286438 Msa0996310:three_prime_UTR
TCATACCAATAGGTCTGTTT+TGG 0.299769 6_4:+74290155 None:intergenic
CCTTTACCATAACTTTGTTT+TGG 0.306200 6_4:-74286641 Msa0996310:three_prime_UTR
TATTTGTTCTAAATCCATTA+GGG 0.345822 6_4:+74290233 None:intergenic
TGGTTTGGTTTGGCTTGGTT+TGG 0.353903 6_4:-74286457 Msa0996310:three_prime_UTR
TTGTTACTAATTAACAGTTT+TGG 0.366478 6_4:+74286531 None:intergenic
GAGCAACAAGAGCAGGATAC+TGG 0.370822 6_4:-74290210 Msa0996310:CDS
AAATGGAATCTGTTCTGATA+TGG 0.374346 6_4:-74287025 Msa0996310:CDS
CTCAAGGAATTAGAACTGAT+TGG 0.379320 6_4:-74290099 Msa0996310:CDS
TTTGGTTTGGCTTGGTTTGG+TGG 0.379344 6_4:-74286454 Msa0996310:three_prime_UTR
CATAATATATGCAAAGGTCT+AGG 0.384330 6_4:+74286599 None:intergenic
TCATGCCAAAACAGACCTAT+TGG 0.385273 6_4:-74290160 Msa0996310:CDS
ATAAATTGGTGATAATGGTT+TGG 0.412402 6_4:-74286472 Msa0996310:three_prime_UTR
TGAGGACAATACTGGATTAC+AGG 0.413847 6_4:-74290041 Msa0996310:intron
AAGACATTGGTTTACTATAG+AGG 0.419530 6_4:-74290130 Msa0996310:CDS
GTTTGGCTTGGTTTGGTGGG+TGG 0.423757 6_4:-74286450 Msa0996310:three_prime_UTR
AGGAAGACAAAGATGATTCA+TGG 0.428096 6_4:-74286885 Msa0996310:CDS
AAAGAGTGTGAGGACAATAC+TGG 0.433988 6_4:-74290049 Msa0996310:CDS
TTGGTTTGGCTTGGTTTGGT+GGG 0.436541 6_4:-74286453 Msa0996310:three_prime_UTR
TTGTCAATTATTATCTAAAG+AGG 0.436603 6_4:-74291148 Msa0996310:CDS
CATTTGTAAAGATCAACTTC+AGG 0.441657 6_4:+74291089 None:intergenic
GATAATGGTTTGGTTTGGCT+TGG 0.444191 6_4:-74286462 Msa0996310:three_prime_UTR
ATCAATGAATATTTGAAAGC+TGG 0.444854 6_4:-74286735 Msa0996310:three_prime_UTR
TCAAGGAATTAGAACTGATT+GGG 0.453361 6_4:-74290098 Msa0996310:CDS
TCTTTACAAATGTGAACCTT+GGG 0.457920 6_4:-74291078 Msa0996310:CDS
CGGGACCGAAAATACCCTAA+TGG 0.459128 6_4:-74290247 Msa0996310:CDS
ATCTTTACAAATGTGAACCT+TGG 0.461628 6_4:-74291079 Msa0996310:CDS
AATGTCTTCTTCATACCAAT+AGG 0.469539 6_4:+74290145 None:intergenic
ACAAATAGAGCAACAAGAGC+AGG 0.482385 6_4:-74290217 Msa0996310:CDS
GATTTAATGAAAATCAAGAT+TGG 0.489521 6_4:-74286763 Msa0996310:three_prime_UTR
TTGGTGATAATGGTTTGGTT+TGG 0.492611 6_4:-74286467 Msa0996310:three_prime_UTR
AAACCTGGTGGTAAACCAAC+TGG 0.504338 6_4:+74291197 None:intergenic
TGTGAACCTTGGGAATTAGC+AGG 0.505500 6_4:-74291068 Msa0996310:intron
AAGAAAATTATGTCACCAGT+TGG 0.506075 6_4:-74291212 Msa0996310:exon
TACCATTCTGGATCTCTACT+TGG 0.508648 6_4:+74290283 None:intergenic
GCAGGATACTGGAAATCTAC+AGG 0.508927 6_4:-74290199 Msa0996310:CDS
ATTTCTTCACCACCAACCAT+TGG 0.521704 6_4:+74286820 None:intergenic
CCTCACACTCTTTATCATCA+AGG 0.523352 6_4:+74290059 None:intergenic
ATCATCTTCATGTTTAGAAG+AGG 0.530767 6_4:-74286905 Msa0996310:CDS
TGCCAAGTAGAGATCCAGAA+TGG 0.535141 6_4:-74290285 Msa0996310:CDS
CCACCACCAAAACAAAGTTA+TGG 0.540388 6_4:+74286635 None:intergenic
TTAATGAAAATCAAGATTGG+TGG 0.542656 6_4:-74286760 Msa0996310:three_prime_UTR
ATAATATATGCAAAGGTCTA+GGG 0.551867 6_4:+74286600 None:intergenic
CCTCGTGAGCATAGCTCAGT+TGG 0.553488 6_4:+74286565 None:intergenic
TCACCAGTTGGTTTACCACC+AGG 0.555889 6_4:-74291200 Msa0996310:CDS
TCTAATACACCAATGGTTGG+TGG 0.556914 6_4:-74286829 Msa0996310:CDS
TGAGCATAGCTCAGTTGGTA+GGG 0.557113 6_4:+74286570 None:intergenic
CCAAAACAAAGTTATGGTAA+AGG 0.558321 6_4:+74286641 None:intergenic
TATCTAAAGAGGAAAATCAA+TGG 0.563389 6_4:-74291137 Msa0996310:CDS
TTGACAAGCTCTTCATCAGT+AGG 0.565970 6_4:+74291164 None:intergenic
GTATTCTTCTAATACACCAA+TGG 0.568650 6_4:-74286836 Msa0996310:CDS
TATTGGTATGAAGAAGACAT+TGG 0.580527 6_4:-74290143 Msa0996310:CDS
ATGATGTCTCCAGAAATACT+AGG 0.584004 6_4:-74286931 Msa0996310:CDS
TCTTCTAATACACCAATGGT+TGG 0.588359 6_4:-74286832 Msa0996310:CDS
ATATAACCTGCTAATTCCCA+AGG 0.594404 6_4:+74291062 None:intergenic
GTGAGCATAGCTCAGTTGGT+AGG 0.597964 6_4:+74286569 None:intergenic
ACAATGCATAATATATGCAA+AGG 0.603152 6_4:+74286593 None:intergenic
CCAACTGAGCTATGCTCACG+AGG 0.617839 6_4:-74286565 Msa0996310:three_prime_UTR
TGGTGGGTGGACTTGTTTAG+GGG 0.619419 6_4:-74286437 Msa0996310:three_prime_UTR
GTAGGATGAAACCTGAAACC+TGG 0.619772 6_4:+74291182 None:intergenic
CAATCAGTTCTAATTCCTTG+AGG 0.630679 6_4:+74290100 None:intergenic
TATAGAGGAAGAGCTCCTCA+AGG 0.649242 6_4:-74290115 Msa0996310:CDS
CCTTGATGATAAAGAGTGTG+AGG 0.659570 6_4:-74290059 Msa0996310:CDS
AATTCATTACAGAAGATGCA+TGG 0.663634 6_4:-74286858 Msa0996310:CDS
TCTGATATGGAAGAGCAACA+AGG 0.679765 6_4:-74287012 Msa0996310:CDS
GGATGAAACCTGAAACCTGG+TGG 0.735570 6_4:+74291185 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATTAAAAAAGTGATA+TGG + chr6_4:74289189-74289208 None:intergenic 10.0%
!!! AAATTATCTTTAAAAGTTTA+TGG - chr6_4:74290444-74290463 Msa0996310:intron 10.0%
!! ATTTATCAAATTTGTCATAA+TGG - chr6_4:74286650-74286669 Msa0996310:three_prime_UTR 15.0%
!!! TCATAATGGAAATTAATATT+TGG - chr6_4:74286664-74286683 Msa0996310:three_prime_UTR 15.0%
!! AAATATCACATTATTAAACA+TGG - chr6_4:74286831-74286850 Msa0996310:CDS 15.0%
!! CTTAAATTAATTTATTCTGA+TGG - chr6_4:74287325-74287344 Msa0996310:intron 15.0%
!!! TTATGTTTGAAGTTTTTTAT+TGG + chr6_4:74287918-74287937 None:intergenic 15.0%
!!! TAGTTTTTTTTTAGTGATAT+TGG - chr6_4:74289212-74289231 Msa0996310:intron 15.0%
!!! TAATCATTTAAAGCATTATT+TGG + chr6_4:74289487-74289506 None:intergenic 15.0%
!! TTGTCAATTATTATCTAAAG+AGG - chr6_4:74286520-74286539 Msa0996310:three_prime_UTR 20.0%
!!! TATATCCTATTTTAGTTCTT+AGG + chr6_4:74287133-74287152 None:intergenic 20.0%
!! AAGAGAAAATTTCTATAATG+AGG + chr6_4:74287238-74287257 None:intergenic 20.0%
!!! ATTCTGATGGAATTTTTTTT+TGG - chr6_4:74287338-74287357 Msa0996310:intron 20.0%
!!! TATTTGTTCTAAATCCATTA+GGG + chr6_4:74287438-74287457 None:intergenic 20.0%
!!! GGTTTTTTCTTAATCATTTT+TGG + chr6_4:74287812-74287831 None:intergenic 20.0%
!! AGAAAAAACCAAAAATGTTA+AGG - chr6_4:74287822-74287841 Msa0996310:intron 20.0%
!! TACTAATAATAACTTCAACA+AGG + chr6_4:74287975-74287994 None:intergenic 20.0%
!! AAGGGTTAATGAATAATATA+AGG + chr6_4:74288544-74288563 None:intergenic 20.0%
!!! ATATTATTCATTAACCCTTT+TGG - chr6_4:74288545-74288564 Msa0996310:intron 20.0%
!!! TATTATTCATTAACCCTTTT+GGG - chr6_4:74288546-74288565 Msa0996310:intron 20.0%
!!! AGGGTTAATTGTTTTTTTTA+AGG + chr6_4:74288577-74288596 None:intergenic 20.0%
!! AAAAAAAACAATTAACCCTT+TGG - chr6_4:74288578-74288597 Msa0996310:intron 20.0%
!!! TTTTGACATTAAAAACCAAA+GGG + chr6_4:74288596-74288615 None:intergenic 20.0%
!!! ATTTTGACATTAAAAACCAA+AGG + chr6_4:74288597-74288616 None:intergenic 20.0%
!! AGTAATAAAACTATACTACT+AGG + chr6_4:74288970-74288989 None:intergenic 20.0%
!! GTTTAGTATATAGTATCTAT+TGG + chr6_4:74289407-74289426 None:intergenic 20.0%
!! TAAATATGTTGAAACCATAT+AGG + chr6_4:74290091-74290110 None:intergenic 20.0%
!!! ATATTTATCTAGTTCTGTTT+AGG - chr6_4:74290104-74290123 Msa0996310:CDS 20.0%
!! GATTTAATGAAAATCAAGAT+TGG - chr6_4:74290905-74290924 Msa0996310:intron 20.0%
!!! TTGTTACTAATTAACAGTTT+TGG + chr6_4:74291140-74291159 None:intergenic 20.0%
!!! TACTTATAAATTGGTGATAA+TGG - chr6_4:74291191-74291210 Msa0996310:CDS 20.0%
! TATCTAAAGAGGAAAATCAA+TGG - chr6_4:74286531-74286550 Msa0996310:three_prime_UTR 25.0%
! ATTTCATAAGCCTAAAACTA+TGG - chr6_4:74286889-74286908 Msa0996310:CDS 25.0%
!! ATGTGTATGTATTTTCCATT+AGG - chr6_4:74287295-74287314 Msa0996310:intron 25.0%
! AATTTAAGAACTTAGCCTAA+TGG + chr6_4:74287313-74287332 None:intergenic 25.0%
!!! TAAATCCATTAGGGTATTTT+CGG + chr6_4:74287429-74287448 None:intergenic 25.0%
!! CTATTTGTTCTAAATCCATT+AGG + chr6_4:74287439-74287458 None:intergenic 25.0%
! GAAACTAAGTTAATAACTTG+CGG - chr6_4:74288141-74288160 Msa0996310:intron 25.0%
! ACAACAATTTAGATTGTTGA+TGG - chr6_4:74288246-74288265 Msa0996310:intron 25.0%
! GATTAATTTCGTAATGTAGA+TGG - chr6_4:74288282-74288301 Msa0996310:intron 25.0%
!! TGTTCAAATGCATAATTTTG+AGG + chr6_4:74288448-74288467 None:intergenic 25.0%
!!! TTTTAAGGAAAAACCCAAAA+GGG + chr6_4:74288562-74288581 None:intergenic 25.0%
!!! TTTTTAAGGAAAAACCCAAA+AGG + chr6_4:74288563-74288582 None:intergenic 25.0%
! GAAAAAAGAGTTATGAAAGT+AGG + chr6_4:74288697-74288716 None:intergenic 25.0%
!!! GCTTTTTCAGATCAAATATA+TGG + chr6_4:74288746-74288765 None:intergenic 25.0%
! TTGTCATATAGAGATATTAG+AGG + chr6_4:74289088-74289107 None:intergenic 25.0%
! ACAAAATGAAAGTGATAGAT+AGG + chr6_4:74289344-74289363 None:intergenic 25.0%
!! CATTTAAAGCATTATTTGGT+AGG + chr6_4:74289483-74289502 None:intergenic 25.0%
!! AATGCTTTAAATGATTAAGC+CGG - chr6_4:74289490-74289509 Msa0996310:intron 25.0%
! ACATTGATATAAGTCATGTT+TGG - chr6_4:74289558-74289577 Msa0996310:intron 25.0%
!!! TATAAACACTTTTGAGACTA+TGG + chr6_4:74289852-74289871 None:intergenic 25.0%
!!! TAAAACTGACTTGAAAAATG+AGG + chr6_4:74289896-74289915 None:intergenic 25.0%
!! CAGTTTTACAATGTTGAATT+AGG - chr6_4:74289908-74289927 Msa0996310:intron 25.0%
! TATAATGTAGTCAACAATTG+AGG + chr6_4:74290130-74290149 None:intergenic 25.0%
!!! TTTTTTTTTTTTGGTGTCCA+AGG - chr6_4:74290262-74290281 Msa0996310:CDS 25.0%
!! TTCACACTCATTATTGATTA+TGG + chr6_4:74290717-74290736 None:intergenic 25.0%
! TTAATGAAAATCAAGATTGG+TGG - chr6_4:74290908-74290927 Msa0996310:intron 25.0%
! ATCAATGAATATTTGAAAGC+TGG - chr6_4:74290933-74290952 Msa0996310:intron 25.0%
! ATAATATATGCAAAGGTCTA+GGG + chr6_4:74291071-74291090 None:intergenic 25.0%
! ACAATGCATAATATATGCAA+AGG + chr6_4:74290299-74290318 None:intergenic 25.0%
!!! ATAAATTGGTGATAATGGTT+TGG - chr6_4:74291196-74291215 Msa0996310:CDS 25.0%
AAGAAAATTATGTCACCAGT+TGG - chr6_4:74286456-74286475 Msa0996310:three_prime_UTR 30.0%
CATTTGTAAAGATCAACTTC+AGG + chr6_4:74286582-74286601 None:intergenic 30.0%
ATCTTTACAAATGTGAACCT+TGG - chr6_4:74286589-74286608 Msa0996310:three_prime_UTR 30.0%
TCTTTACAAATGTGAACCTT+GGG - chr6_4:74286590-74286609 Msa0996310:three_prime_UTR 30.0%
!!! TGCAATTTTTAGCAATATCG+AGG + chr6_4:74286997-74287016 None:intergenic 30.0%
TCGATATTGCTAAAAATTGC+AGG - chr6_4:74286996-74287015 Msa0996310:CDS 30.0%
AAAAATTGCAGGAAAATGTG+TGG - chr6_4:74287007-74287026 Msa0996310:CDS 30.0%
ACGATCCTAAGAACTAAAAT+AGG - chr6_4:74287125-74287144 Msa0996310:intron 30.0%
GAGAAAACTACTTCCAAATT+TGG - chr6_4:74287163-74287182 Msa0996310:intron 30.0%
AATGTCTTCTTCATACCAAT+AGG + chr6_4:74287526-74287545 None:intergenic 30.0%
TATTGGTATGAAGAAGACAT+TGG - chr6_4:74287525-74287544 Msa0996310:intron 30.0%
!! AAGACATTGGTTTACTATAG+AGG - chr6_4:74287538-74287557 Msa0996310:intron 30.0%
TCAAGGAATTAGAACTGATT+GGG - chr6_4:74287570-74287589 Msa0996310:intron 30.0%
! ATTGCATGCCTTAACATTTT+TGG + chr6_4:74287833-74287852 None:intergenic 30.0%
TCATATACAAGCATAAAGTG+AGG + chr6_4:74288181-74288200 None:intergenic 30.0%
TTTAATGTCGTTCAAAGTCA+TGG - chr6_4:74288481-74288500 Msa0996310:intron 30.0%
AAGTCATGGTTAATTACGTT+CGG - chr6_4:74288495-74288514 Msa0996310:intron 30.0%
!! TTGTACTCAAAACTAGTCTT+TGG - chr6_4:74288646-74288665 Msa0996310:intron 30.0%
AGAGTTATGAAAGTAGGTAA+AGG + chr6_4:74288691-74288710 None:intergenic 30.0%
ATTTGAACCATAAAAGAACG+TGG - chr6_4:74288908-74288927 Msa0996310:intron 30.0%
TATGGATCATATAAGTAGGT+AGG + chr6_4:74289171-74289190 None:intergenic 30.0%
GTGATATGGATCATATAAGT+AGG + chr6_4:74289175-74289194 None:intergenic 30.0%
ATTCTTCTCATAATCCATGA+AGG - chr6_4:74289284-74289303 Msa0996310:intron 30.0%
ATGAAAGTGATAGATAGGAT+AGG + chr6_4:74289339-74289358 None:intergenic 30.0%
! CTATCACTTTCATTTTGTGT+CGG - chr6_4:74289346-74289365 Msa0996310:intron 30.0%
! ATGCTTTAAATGATTAAGCC+GGG - chr6_4:74289491-74289510 Msa0996310:intron 30.0%
CTTATGCCATATAAGTATCT+AGG + chr6_4:74289530-74289549 None:intergenic 30.0%
! CTAATCTCCATAAGCTTTTA+GGG + chr6_4:74289721-74289740 None:intergenic 30.0%
! ACTAATCTCCATAAGCTTTT+AGG + chr6_4:74289722-74289741 None:intergenic 30.0%
AGACTGTTTCGAATAACTTA+TGG + chr6_4:74289779-74289798 None:intergenic 30.0%
TTGTGGCATAAAGATTCAAA+GGG + chr6_4:74290052-74290071 None:intergenic 30.0%
TTTGTGGCATAAAGATTCAA+AGG + chr6_4:74290053-74290072 None:intergenic 30.0%
!! ATGTTACTTTAGCACTACTT+AGG - chr6_4:74290178-74290197 Msa0996310:CDS 30.0%
GACAATGCATAATATATGCA+AGG + chr6_4:74290300-74290319 None:intergenic 30.0%
TTCAATGACATAAACACTTG+TGG + chr6_4:74290536-74290555 None:intergenic 30.0%
AAATGGAATCTGTTCTGATA+TGG - chr6_4:74290643-74290662 Msa0996310:intron 30.0%
ATCATCTTCATGTTTAGAAG+AGG - chr6_4:74290763-74290782 Msa0996310:intron 30.0%
AATTCATTACAGAAGATGCA+TGG - chr6_4:74290810-74290829 Msa0996310:intron 30.0%
GTATTCTTCTAATACACCAA+TGG - chr6_4:74290832-74290851 Msa0996310:intron 30.0%
CCAAAACAAAGTTATGGTAA+AGG + chr6_4:74291030-74291049 None:intergenic 30.0%
!! CCTTTACCATAACTTTGTTT+TGG - chr6_4:74291027-74291046 Msa0996310:intron 30.0%
!!! TTACCATAACTTTGTTTTGG+TGG - chr6_4:74291030-74291049 Msa0996310:intron 30.0%
CATAATATATGCAAAGGTCT+AGG + chr6_4:74291072-74291091 None:intergenic 30.0%
ATATAACCTGCTAATTCCCA+AGG + chr6_4:74286609-74286628 None:intergenic 35.0%
AGTTCTTGCATCAAAGAGTT+TGG - chr6_4:74286788-74286807 Msa0996310:exon 35.0%
GAACCATGAATCTTAGTTGA+GGG + chr6_4:74286940-74286959 None:intergenic 35.0%
TGAACCATGAATCTTAGTTG+AGG + chr6_4:74286941-74286960 None:intergenic 35.0%
AGATTCATGGTTCAGAATTG+CGG - chr6_4:74286947-74286966 Msa0996310:CDS 35.0%
TGGAGAATTAGGTCCAAATT+TGG + chr6_4:74287179-74287198 None:intergenic 35.0%
GAGTAGTGATATGGAGAATT+AGG + chr6_4:74287190-74287209 None:intergenic 35.0%
TTACCTAGAGAGTAGTGATA+TGG + chr6_4:74287199-74287218 None:intergenic 35.0%
!! GATCCAGAATGGTACTTTTT+CGG - chr6_4:74287394-74287413 Msa0996310:intron 35.0%
! TCATACCAATAGGTCTGTTT+TGG + chr6_4:74287516-74287535 None:intergenic 35.0%
! CAATCAGTTCTAATTCCTTG+AGG + chr6_4:74287571-74287590 None:intergenic 35.0%
CTCAAGGAATTAGAACTGAT+TGG - chr6_4:74287569-74287588 Msa0996310:intron 35.0%
ATCCTCTACAATCAGCTTTA+CGG - chr6_4:74287687-74287706 Msa0996310:intron 35.0%
! ATCCTCTGCAATCAGTTTTA+CGG + chr6_4:74287743-74287762 None:intergenic 35.0%
ATCAGTCTAGCACTTAATCA+TGG + chr6_4:74288046-74288065 None:intergenic 35.0%
! AATCTCATTGCACGATTTTC+AGG - chr6_4:74288371-74288390 Msa0996310:intron 35.0%
! CAGTTTTCCACGTTCTTTTA+TGG + chr6_4:74288918-74288937 None:intergenic 35.0%
! TGCTTTAAATGATTAAGCCG+GGG - chr6_4:74289492-74289511 Msa0996310:intron 35.0%
! TATAAGTATCTAGGACCTCA+TGG + chr6_4:74289521-74289540 None:intergenic 35.0%
TGAGGTCCTAGATACTTATA+TGG - chr6_4:74289521-74289540 Msa0996310:intron 35.0%
AAGCTATCCCTAAAAGCTTA+TGG - chr6_4:74289711-74289730 Msa0996310:intron 35.0%
! TTTGAGACTATGGACATGTT+TGG + chr6_4:74289842-74289861 None:intergenic 35.0%
!! GTCTCAAAAGTGTTTATACG+CGG - chr6_4:74289854-74289873 Msa0996310:intron 35.0%
CTACTATGCTTACAATCAAG+TGG + chr6_4:74289984-74290003 None:intergenic 35.0%
TTGTCAGAGATTGTCCTATA+TGG - chr6_4:74290074-74290093 Msa0996310:CDS 35.0%
GCATAATATATGCAAGGTCA+GGG + chr6_4:74290294-74290313 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+AGG + chr6_4:74290295-74290314 None:intergenic 35.0%
AATGCAATCAAGCTCGTTAA+GGG + chr6_4:74290587-74290606 None:intergenic 35.0%
TGTCGTGTGTTCAAGAAAAA+TGG - chr6_4:74290626-74290645 Msa0996310:intron 35.0%
ATGATGTCTCCAGAAATACT+AGG - chr6_4:74290737-74290756 Msa0996310:intron 35.0%
AGGAAGACAAAGATGATTCA+TGG - chr6_4:74290783-74290802 Msa0996310:intron 35.0%
TCTTCTAATACACCAATGGT+TGG - chr6_4:74290836-74290855 Msa0996310:intron 35.0%
!! TTGGTGATAATGGTTTGGTT+TGG - chr6_4:74291201-74291220 Msa0996310:CDS 35.0%
TTGACAAGCTCTTCATCAGT+AGG + chr6_4:74286507-74286526 None:intergenic 40.0%
! GCTAATGCAGCCATAGTTTT+AGG + chr6_4:74286902-74286921 None:intergenic 40.0%
!! CCTCTAAAACCTTTAGACTG+CGG - chr6_4:74287071-74287090 Msa0996310:intron 40.0%
TCTCCATATCACTACTCTCT+AGG - chr6_4:74287193-74287212 Msa0996310:intron 40.0%
TACCATTCTGGATCTCTACT+TGG + chr6_4:74287388-74287407 None:intergenic 40.0%
!!! AATGGTACTTTTTCGGACCA+CGG - chr6_4:74287401-74287420 Msa0996310:intron 40.0%
ACAAATAGAGCAACAAGAGC+AGG - chr6_4:74287451-74287470 Msa0996310:intron 40.0%
TCATGCCAAAACAGACCTAT+TGG - chr6_4:74287508-74287527 Msa0996310:intron 40.0%
CCTCACACTCTTTATCATCA+AGG + chr6_4:74287612-74287631 None:intergenic 40.0%
! CCTTGATGATAAAGAGTGTG+AGG - chr6_4:74287609-74287628 Msa0996310:intron 40.0%
! AAAGAGTGTGAGGACAATAC+TGG - chr6_4:74287619-74287638 Msa0996310:intron 40.0%
TGAGGACAATACTGGATTAC+AGG - chr6_4:74287627-74287646 Msa0996310:intron 40.0%
! TGATTGCAGAGGATCCATTT+TGG - chr6_4:74287749-74287768 Msa0996310:intron 40.0%
ACACATACACCACACCAAAA+TGG + chr6_4:74287766-74287785 None:intergenic 40.0%
! GATTGCAACCTTGAGTTTTC+AGG + chr6_4:74288114-74288133 None:intergenic 40.0%
GAAAGTAGGTAAAGGCCAAA+GGG + chr6_4:74288683-74288702 None:intergenic 40.0%
TGAAAGTAGGTAAAGGCCAA+AGG + chr6_4:74288684-74288703 None:intergenic 40.0%
AAAGAACGTGGAAAACTGCA+TGG - chr6_4:74288920-74288939 Msa0996310:intron 40.0%
!! GGAGAATTGCTGCTTTATGA+GGG + chr6_4:74289318-74289337 None:intergenic 40.0%
!! AGGAGAATTGCTGCTTTATG+AGG + chr6_4:74289319-74289338 None:intergenic 40.0%
GACAATCTCTGACAAGTTTG+TGG + chr6_4:74290069-74290088 None:intergenic 40.0%
CAATGCAATCAAGCTCGTTA+AGG + chr6_4:74290588-74290607 None:intergenic 40.0%
TCTGATATGGAAGAGCAACA+AGG - chr6_4:74290656-74290675 Msa0996310:intron 40.0%
GATGATGCTCCTAGTATTTC+TGG + chr6_4:74290749-74290768 None:intergenic 40.0%
TCTAATACACCAATGGTTGG+TGG - chr6_4:74290839-74290858 Msa0996310:intron 40.0%
ATTTCTTCACCACCAACCAT+TGG + chr6_4:74290851-74290870 None:intergenic 40.0%
CCACCACCAAAACAAAGTTA+TGG + chr6_4:74291036-74291055 None:intergenic 40.0%
!!! CCATAACTTTGTTTTGGTGG+TGG - chr6_4:74291033-74291052 Msa0996310:intron 40.0%
!!! ACTTTGTTTTGGTGGTGGTT+AGG - chr6_4:74291038-74291057 Msa0996310:intron 40.0%
!!! CTTTGTTTTGGTGGTGGTTA+GGG - chr6_4:74291039-74291058 Msa0996310:intron 40.0%
!! GATAATGGTTTGGTTTGGCT+TGG - chr6_4:74291206-74291225 Msa0996310:CDS 40.0%
AAACCTGGTGGTAAACCAAC+TGG + chr6_4:74286474-74286493 None:intergenic 45.0%
TTGGTTTACCACCAGGTTTC+AGG - chr6_4:74286475-74286494 Msa0996310:three_prime_UTR 45.0%
GTAGGATGAAACCTGAAACC+TGG + chr6_4:74286489-74286508 None:intergenic 45.0%
TGTGAACCTTGGGAATTAGC+AGG - chr6_4:74286600-74286619 Msa0996310:three_prime_UTR 45.0%
CTGCCCTCAACTAAGATTCA+TGG - chr6_4:74286934-74286953 Msa0996310:CDS 45.0%
ATGGTTCAGAATTGCGGCTA+CGG - chr6_4:74286953-74286972 Msa0996310:CDS 45.0%
GGTCACTGCAACCATAATTG+TGG - chr6_4:74287028-74287047 Msa0996310:CDS 45.0%
CAGCAGTGCAACCACAATTA+TGG + chr6_4:74287042-74287061 None:intergenic 45.0%
!! CCGCAGTCTAAAGGTTTTAG+AGG + chr6_4:74287074-74287093 None:intergenic 45.0%
TGCCAAGTAGAGATCCAGAA+TGG - chr6_4:74287383-74287402 Msa0996310:intron 45.0%
!! GGTCCGAAAAAGTACCATTC+TGG + chr6_4:74287400-74287419 None:intergenic 45.0%
!!! ATGGTACTTTTTCGGACCAC+GGG - chr6_4:74287402-74287421 Msa0996310:intron 45.0%
GCAGGATACTGGAAATCTAC+AGG - chr6_4:74287469-74287488 Msa0996310:intron 45.0%
TATAGAGGAAGAGCTCCTCA+AGG - chr6_4:74287553-74287572 Msa0996310:intron 45.0%
CACCGTAAAGCTGATTGTAG+AGG + chr6_4:74287692-74287711 None:intergenic 45.0%
CACCGTAAAACTGATTGCAG+AGG - chr6_4:74287738-74287757 Msa0996310:intron 45.0%
CTACACAGCCTGAAAACTCA+AGG - chr6_4:74288103-74288122 Msa0996310:intron 45.0%
CTCAAGGTTGCAATCAATGC+AGG - chr6_4:74288119-74288138 Msa0996310:intron 45.0%
TAAAGGCCAAAGGGTCAAGT+GGG + chr6_4:74288674-74288693 None:intergenic 45.0%
! TGAGGGTGTACAAACCTTCA+TGG + chr6_4:74289301-74289320 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+AGG + chr6_4:74290322-74290341 None:intergenic 45.0%
TACCAACTGAGCTAAGCTCA+CGG - chr6_4:74290322-74290341 Msa0996310:intron 45.0%
AAGCTCGTTAAGGGTCTGTT+TGG + chr6_4:74290578-74290597 None:intergenic 45.0%
AACGAGCTTGATTGCATTGC+AGG - chr6_4:74290589-74290608 Msa0996310:intron 45.0%
! TGAGCATAGCTCAGTTGGTA+GGG + chr6_4:74291101-74291120 None:intergenic 45.0%
!! TGGTTTGGTTTGGCTTGGTT+TGG - chr6_4:74291211-74291230 Msa0996310:exon 45.0%
!! TTTGGTTTGGCTTGGTTTGG+TGG - chr6_4:74291214-74291233 Msa0996310:exon 45.0%
!! TTGGTTTGGCTTGGTTTGGT+GGG - chr6_4:74291215-74291234 Msa0996310:exon 45.0%
! TTTGGTGGGTGGACTTGTTT+AGG - chr6_4:74291229-74291248 Msa0996310:five_prime_UTR 45.0%
! TTGGTGGGTGGACTTGTTTA+GGG - chr6_4:74291230-74291249 Msa0996310:five_prime_UTR 45.0%
!!! CTTTATATTTTTTTATTATA+AGG - chr6_4:74289021-74289040 Msa0996310:intron 5.0%
!! TTAAAAATAAAATGAAATAA+AGG - chr6_4:74289435-74289454 Msa0996310:intron 5.0%
!! TAAAAATAAAATGAAATAAA+GGG - chr6_4:74289436-74289455 Msa0996310:intron 5.0%
!!! TATAAACTTTTTTTTTTTTT+TGG - chr6_4:74290253-74290272 Msa0996310:CDS 5.0%
!! TTATTATTATACTTATAAAT+TGG - chr6_4:74291182-74291201 Msa0996310:CDS 5.0%
! TCACCAGTTGGTTTACCACC+AGG - chr6_4:74286468-74286487 Msa0996310:three_prime_UTR 50.0%
GGATGAAACCTGAAACCTGG+TGG + chr6_4:74286486-74286505 None:intergenic 50.0%
TTGTGGTTGCACTGCTGTTG+AGG - chr6_4:74287045-74287064 Msa0996310:CDS 50.0%
AAACCTTTAGACTGCGGTCG+CGG - chr6_4:74287077-74287096 Msa0996310:intron 50.0%
!! TTAGGGTATTTTCGGTCCCG+TGG + chr6_4:74287421-74287440 None:intergenic 50.0%
CGGGACCGAAAATACCCTAA+TGG - chr6_4:74287421-74287440 Msa0996310:intron 50.0%
GAGCAACAAGAGCAGGATAC+TGG - chr6_4:74287458-74287477 Msa0996310:intron 50.0%
!! GCAGAGGATCCATTTTGGTG+TGG - chr6_4:74287754-74287773 Msa0996310:intron 50.0%
GTAAAGGCCAAAGGGTCAAG+TGG + chr6_4:74288675-74288694 None:intergenic 50.0%
! ATTAAGCCGGGGTATCCATG+AGG - chr6_4:74289503-74289522 Msa0996310:intron 50.0%
ACCAACTGAGCTAAGCTCAC+GGG - chr6_4:74290323-74290342 Msa0996310:intron 50.0%
GTGAGCATAGCTCAGTTGGT+AGG + chr6_4:74291102-74291121 None:intergenic 50.0%
! TGGTGGGTGGACTTGTTTAG+GGG - chr6_4:74291231-74291250 Msa0996310:five_prime_UTR 50.0%
CAGAATTGCGGCTACGGTTG+TGG - chr6_4:74286959-74286978 Msa0996310:CDS 55.0%
TAACCGCGACCGCAGTCTAA+AGG + chr6_4:74287083-74287102 None:intergenic 55.0%
CGGTGCAGCAGAGATAGAAG+AGG - chr6_4:74287707-74287726 Msa0996310:intron 55.0%
! TTGGTGCCCACTTGACCCTT+TGG - chr6_4:74288665-74288684 Msa0996310:intron 55.0%
CTAGGACCTCATGGATACCC+CGG + chr6_4:74289512-74289531 None:intergenic 55.0%
CAAGGTCAGGGTTCGAACCT+TGG + chr6_4:74290282-74290301 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+GGG - chr6_4:74290324-74290343 Msa0996310:intron 55.0%
CCTCGTGAGCATAGCTCAGT+TGG + chr6_4:74291106-74291125 None:intergenic 55.0%
CCAACTGAGCTATGCTCACG+AGG - chr6_4:74291103-74291122 Msa0996310:CDS 55.0%
!! GTTTGGCTTGGTTTGGTGGG+TGG - chr6_4:74291218-74291237 Msa0996310:exon 55.0%
CCCCGTGAGCTTAGCTCAGT+TGG + chr6_4:74290327-74290346 None:intergenic 60.0%
GCGGTCGCGGTTAGAGCTGA+AGG - chr6_4:74287090-74287109 Msa0996310:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 74286426 74291264 74286426 ID=Msa0996310;Name=Msa0996310
chr6_4 mRNA 74286426 74291264 74286426 ID=Msa0996310-mRNA-1;Parent=Msa0996310;Name=Msa0996310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=39|1|1|1|1|1|3|369|239
chr6_4 exon 74286426 74287079 74286426 ID=Msa0996310-mRNA-1:exon:13931;Parent=Msa0996310-mRNA-1
chr6_4 exon 74290042 74290319 74290042 ID=Msa0996310-mRNA-1:exon:13930;Parent=Msa0996310-mRNA-1
chr6_4 exon 74291069 74291264 74291069 ID=Msa0996310-mRNA-1:exon:13929;Parent=Msa0996310-mRNA-1
chr6_4 five_prime_UTR 74291226 74291264 74291226 ID=Msa0996310-mRNA-1:five_prime_utr;Parent=Msa0996310-mRNA-1
chr6_4 CDS 74291069 74291225 74291069 ID=Msa0996310-mRNA-1:cds;Parent=Msa0996310-mRNA-1
chr6_4 CDS 74290042 74290319 74290042 ID=Msa0996310-mRNA-1:cds;Parent=Msa0996310-mRNA-1
chr6_4 CDS 74286795 74287079 74286795 ID=Msa0996310-mRNA-1:cds;Parent=Msa0996310-mRNA-1
chr6_4 three_prime_UTR 74286426 74286794 74286426 ID=Msa0996310-mRNA-1:three_prime_utr;Parent=Msa0996310-mRNA-1
Gene Sequence

>Msa0996310

ATGTCACCAGTTGGTTTACCACCAGGTTTCAGGTTTCATCCTACTGATGAAGAGCTTGTCAATTATTATCTAAAGAGGAAAATCAATGGTCAAGAAATCGAACTTGATATCATTCCTGAAGTTGATCTTTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTGCCAAGTAGAGATCCAGAATGGTACTTTTTCGGACCACGGGACCGAAAATACCCTAATGGATTTAGAACAAATAGAGCAACAAGAGCAGGATACTGGAAATCTACAGGTAAAGACAGAAAAGTTTCATGCCAAAACAGACCTATTGGTATGAAGAAGACATTGGTTTACTATAGAGGAAGAGCTCCTCAAGGAATTAGAACTGATTGGGTTATGCATGAGTATCGCCTTGATGATAAAGAGTGTGAGGACAATACTGGATTACAGGATACATACGCATTGTGTCGTGTGTTCAAGAAAAATGGAATCTGTTCTGATATGGAAGAGCAACAAGGACAATGTAGCATGTTACAAATTGAATGTTCTCAAACCATAATCAATAATGAGTGTGAAATGATGTCTCCAGAAATACTAGGAGCATCATCTTCATGTTTAGAAGAGGAAGACAAAGATGATTCATGGATGCAATTCATTACAGAAGATGCATGGTATTCTTCTAATACACCAATGGTTGGTGGTGAAGAAATTTCACATGTTACATTTACAAATTAA
Protein sequence

>Msa0996310

MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSCQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNTGLQDTYALCRVFKKNGICSDMEEQQGQCSMLQIECSQTIINNECEMMSPEILGASSSCLEEEDKDDSWMQFITEDAWYSSNTPMVGGEEISHVTFTN*