AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0996630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0996630 MtrunA17_Chr7g0214071 82.031 256 25 7 12 249 1 253 5.63e-136 383
Msa0996630 MtrunA17_Chr8g0385991 60.465 172 57 3 12 173 1 171 4.85e-71 217
Msa0996630 MtrunA17_Chr3g0131911 58.721 172 59 3 12 171 1 172 5.74e-66 204
Msa0996630 MtrunA17_Chr4g0047841 53.005 183 57 3 24 177 14 196 5.95e-57 185
Msa0996630 MtrunA17_Chr7g0252971 46.078 204 85 4 22 208 5 200 1.19e-55 181
Msa0996630 MtrunA17_Chr2g0318101 52.660 188 64 5 25 187 15 202 1.27e-55 182
Msa0996630 MtrunA17_Chr4g0042561 56.604 159 57 4 25 173 9 165 3.37e-54 176
Msa0996630 MtrunA17_Chr5g0417791 55.696 158 58 3 23 170 1 156 3.59e-54 175
Msa0996630 MtrunA17_Chr7g0243371 89.773 88 9 0 70 157 12 99 1.45e-53 169
Msa0996630 MtrunA17_Chr3g0124761 55.422 166 60 5 22 178 4 164 1.55e-52 172
Msa0996630 MtrunA17_Chr7g0263931 46.597 191 91 4 20 200 6 195 2.07e-52 172
Msa0996630 MtrunA17_Chr2g0309891 44.737 228 101 7 23 228 4 228 4.09e-52 172
Msa0996630 MtrunA17_Chr3g0109821 57.692 156 55 4 23 169 4 157 1.25e-51 178
Msa0996630 MtrunA17_Chr1g0147421 51.462 171 78 3 8 173 10 180 1.52e-51 171
Msa0996630 MtrunA17_Chr4g0018391 51.875 160 68 4 25 177 7 164 1.91e-50 168
Msa0996630 MtrunA17_Chr2g0326361 52.632 152 62 2 25 166 14 165 5.31e-50 166
Msa0996630 MtrunA17_Chr2g0316971 50.625 160 71 2 22 173 20 179 5.59e-50 168
Msa0996630 MtrunA17_Chr3g0139331 51.282 156 72 2 22 173 8 163 8.82e-50 166
Msa0996630 MtrunA17_Chr5g0433781 44.196 224 95 9 23 231 4 212 1.20e-49 172
Msa0996630 MtrunA17_Chr4g0017921 47.541 183 78 5 25 192 8 187 1.62e-49 166
Msa0996630 MtrunA17_Chr4g0060931 46.154 195 87 7 12 193 1 190 4.11e-49 165
Msa0996630 MtrunA17_Chr8g0384721 42.339 248 108 9 21 244 3 239 5.00e-49 162
Msa0996630 MtrunA17_Chr5g0405211 48.521 169 78 4 22 183 5 171 6.13e-49 164
Msa0996630 MtrunA17_Chr6g0484441 44.019 209 100 5 22 226 2 197 9.25e-49 163
Msa0996630 MtrunA17_Chr5g0398971 47.826 161 75 3 25 177 7 166 1.46e-48 163
Msa0996630 MtrunA17_Chr1g0183741 42.365 203 108 4 25 219 10 211 2.02e-48 160
Msa0996630 MtrunA17_Chr8g0361731 38.400 250 136 4 12 246 1 247 2.58e-48 164
Msa0996630 MtrunA17_Chr2g0309331 49.682 157 71 3 21 170 6 161 2.86e-48 162
Msa0996630 MtrunA17_Chr2g0318081 54.839 155 62 3 21 169 12 164 3.74e-48 162
Msa0996630 MtrunA17_Chr1g0200561 50.968 155 67 3 22 169 16 168 4.36e-48 162
Msa0996630 MtrunA17_Chr4g0056541 51.299 154 66 3 24 170 6 157 1.33e-47 161
Msa0996630 MtrunA17_Chr6g0481091 49.697 165 72 4 23 179 4 165 1.54e-47 157
Msa0996630 MtrunA17_Chr3g0091921 46.629 178 73 4 4 173 7 170 2.30e-47 159
Msa0996630 MtrunA17_Chr8g0372121 50.980 153 66 4 25 170 6 156 3.39e-47 159
Msa0996630 MtrunA17_Chr3g0130731 52.830 159 63 3 21 170 3 158 8.40e-47 157
Msa0996630 MtrunA17_Chr8g0359921 54.487 156 61 4 22 169 11 164 1.77e-46 157
Msa0996630 MtrunA17_Chr6g0453451 46.552 174 81 5 10 173 3 174 3.01e-46 156
Msa0996630 MtrunA17_Chr6g0461661 47.097 155 74 2 23 169 16 170 3.45e-46 158
Msa0996630 MtrunA17_Chr7g0253011 49.123 171 74 5 12 169 1 171 9.87e-46 157
Msa0996630 MtrunA17_Chr8g0346001 44.318 176 78 3 13 170 3 176 1.68e-45 157
Msa0996630 MtrunA17_Chr7g0261411 50.685 146 68 2 25 167 10 154 3.56e-45 153
Msa0996630 MtrunA17_Chr2g0312321 44.103 195 84 7 15 199 1 180 3.69e-45 153
Msa0996630 MtrunA17_Chr5g0417001 45.198 177 83 2 12 174 1 177 9.01e-45 154
Msa0996630 MtrunA17_Chr5g0400461 43.333 180 92 2 21 190 2 181 1.17e-44 153
Msa0996630 MtrunA17_Chr5g0442771 47.977 173 73 5 11 167 5 176 2.92e-44 151
Msa0996630 MtrunA17_Chr7g0217721 40.000 215 101 5 18 211 12 219 5.40e-44 151
Msa0996630 MtrunA17_Chr3g0144271 52.083 144 65 3 19 158 17 160 1.25e-43 152
Msa0996630 MtrunA17_Chr2g0311651 42.408 191 85 5 17 186 13 199 1.74e-43 149
Msa0996630 MtrunA17_Chr4g0054791 53.030 132 56 2 25 150 6 137 2.03e-43 149
Msa0996630 MtrunA17_Chr7g0217711 51.852 135 60 3 18 149 12 144 5.42e-42 141
Msa0996630 MtrunA17_Chr6g0453131 47.500 160 68 4 25 169 15 173 1.51e-41 146
Msa0996630 MtrunA17_Chr2g0311661 45.251 179 76 5 12 170 9 185 2.74e-41 143
Msa0996630 MtrunA17_Chr3g0128111 47.333 150 69 3 28 169 45 192 2.83e-41 141
Msa0996630 MtrunA17_Chr5g0428991 50.323 155 67 3 24 170 24 176 3.10e-41 149
Msa0996630 MtrunA17_Chr3g0128151 48.366 153 69 3 25 169 22 172 2.09e-40 146
Msa0996630 MtrunA17_Chr1g0201021 47.561 164 70 5 27 179 21 179 7.01e-40 144
Msa0996630 MtrunA17_Chr3g0130101 41.237 194 86 6 27 209 9 185 9.64e-39 138
Msa0996630 MtrunA17_Chr1g0197351 49.102 167 67 4 25 176 42 205 1.84e-38 139
Msa0996630 MtrunA17_Chr3g0092671 45.963 161 77 4 27 179 7 165 2.03e-37 137
Msa0996630 MtrunA17_Chr1g0197361 43.182 176 90 4 27 194 10 183 3.53e-37 137
Msa0996630 MtrunA17_Chr4g0076731 53.968 126 54 2 27 149 56 180 4.18e-36 132
Msa0996630 MtrunA17_Chr8g0345671 46.309 149 71 4 25 167 11 156 6.11e-36 131
Msa0996630 MtrunA17_Chr8g0364791 42.771 166 81 4 24 179 5 166 2.67e-35 130
Msa0996630 MtrunA17_Chr4g0038751 43.210 162 84 5 12 169 4 161 1.60e-34 125
Msa0996630 MtrunA17_Chr8g0384201 42.169 166 82 4 24 179 5 166 7.43e-34 127
Msa0996630 MtrunA17_Chr4g0050701 44.094 127 62 2 25 149 11 130 2.93e-32 116
Msa0996630 MtrunA17_Chr8g0345691 40.667 150 80 4 24 167 11 157 4.63e-30 116
Msa0996630 MtrunA17_Chr3g0113001 49.573 117 51 3 60 170 3 117 1.00e-28 110
Msa0996630 MtrunA17_Chr8g0345711 44.615 130 65 3 25 148 12 140 2.11e-28 106
Msa0996630 MtrunA17_Chr4g0026141 39.873 158 80 6 25 168 5 161 5.60e-28 107
Msa0996630 MtrunA17_Chr2g0321741 48.515 101 46 2 54 150 21 119 8.93e-28 108
Msa0996630 MtrunA17_Chr2g0321631 40.252 159 77 6 26 168 5 161 1.27e-27 106
Msa0996630 MtrunA17_Chr8g0345731 41.353 133 68 4 25 148 24 155 3.32e-26 100
Msa0996630 MtrunA17_Chr8g0345721 38.065 155 60 3 28 147 38 191 9.66e-26 100
Msa0996630 MtrunA17_Chr8g0384351 40.132 152 69 6 23 171 8 140 2.13e-25 99.0
Msa0996630 MtrunA17_Chr3g0113031 49.485 97 34 3 87 173 5 96 4.53e-24 97.4
Msa0996630 MtrunA17_Chr7g0266701 32.143 224 122 10 25 226 4 219 1.23e-23 95.9
Msa0996630 MtrunA17_Chr8g0345741 42.017 119 62 3 36 148 2 119 3.91e-23 92.0
Msa0996630 MtrunA17_Chr8g0345701 38.065 155 68 6 25 159 7 153 1.29e-22 91.3
Msa0996630 MtrunA17_Chr7g0251661 33.333 135 81 5 18 147 3 133 3.62e-18 79.0
Msa0996630 MtrunA17_Chr7g0251651 33.121 157 95 5 17 167 10 162 4.14e-18 79.7
Msa0996630 MtrunA17_Chr7g0251671 32.374 139 85 5 18 151 3 137 1.81e-17 77.0
Msa0996630 MtrunA17_Chr3g0130321 33.533 167 77 7 23 167 5 159 2.63e-17 77.8
Msa0996630 MtrunA17_Chr1g0168571 34.028 144 82 5 33 165 13 154 4.75e-14 70.5
Msa0996630 MtrunA17_Chr3g0113011 48.214 56 29 0 18 73 12 67 1.36e-12 61.6
Msa0996630 MtrunA17_Chr4g0040541 28.509 228 132 11 25 225 48 271 1.51e-12 65.9
Msa0996630 MtrunA17_Chr2g0282871 32.653 147 71 8 25 149 53 193 1.25e-11 63.5
Msa0996630 MtrunA17_Chr3g0113041 46.429 56 30 0 18 73 12 67 8.12e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0996630 AT5G13180.1 71.257 167 46 1 12 176 1 167 4.51e-88 261
Msa0996630 AT2G33480.2 70.909 165 44 3 12 174 1 163 4.05e-82 247
Msa0996630 AT2G33480.1 70.060 167 44 3 12 174 1 165 8.86e-82 246
Msa0996630 AT1G61110.1 55.056 178 59 5 12 169 1 177 3.23e-55 180
Msa0996630 AT3G04070.2 55.090 167 59 4 19 169 4 170 1.90e-54 179
Msa0996630 AT1G69490.1 55.152 165 62 3 25 179 9 171 2.26e-54 176
Msa0996630 AT1G65910.1 43.913 230 113 5 23 244 4 225 2.86e-54 184
Msa0996630 AT1G77450.1 46.226 212 100 4 20 221 5 212 1.73e-53 173
Msa0996630 AT3G04070.1 59.859 142 51 2 19 154 4 145 3.21e-53 176
Msa0996630 AT3G15510.1 56.329 158 52 3 29 169 21 178 6.87e-52 172
Msa0996630 AT5G17260.1 49.711 173 76 3 23 186 4 174 6.51e-51 173
Msa0996630 AT3G03200.1 42.793 222 109 5 23 229 4 222 7.58e-51 172
Msa0996630 AT5G61430.1 53.125 160 65 5 22 173 13 170 1.12e-50 169
Msa0996630 AT5G07680.1 51.875 160 67 4 22 173 14 171 1.28e-50 168
Msa0996630 AT2G24430.2 53.846 156 67 2 19 169 10 165 1.29e-50 168
Msa0996630 AT2G24430.1 53.846 156 67 2 19 169 10 165 1.29e-50 168
Msa0996630 AT5G39610.1 44.651 215 90 6 23 216 18 224 1.70e-50 167
Msa0996630 AT5G07680.2 52.866 157 64 4 25 173 3 157 1.74e-50 167
Msa0996630 AT1G33280.1 51.974 152 65 2 25 170 8 157 2.32e-50 167
Msa0996630 AT5G53950.1 49.189 185 83 4 25 198 17 201 3.06e-50 169
Msa0996630 AT4G27410.2 53.503 157 65 3 22 172 11 165 3.25e-50 166
Msa0996630 AT1G54330.1 56.494 154 56 3 23 169 4 153 4.02e-50 166
Msa0996630 AT1G12260.2 51.875 160 67 5 25 177 7 163 4.79e-50 167
Msa0996630 AT1G62700.1 51.553 161 69 4 24 177 6 164 6.84e-50 168
Msa0996630 AT1G62700.2 51.553 161 69 4 24 177 6 164 6.84e-50 168
Msa0996630 AT4G10350.1 52.121 165 66 5 15 170 1 161 8.33e-50 167
Msa0996630 AT1G12260.1 51.875 160 67 5 25 177 7 163 1.37e-49 167
Msa0996630 AT3G15170.1 48.810 168 76 4 22 181 17 182 1.69e-49 165
Msa0996630 AT2G18060.3 41.880 234 117 7 25 248 9 233 2.94e-49 166
Msa0996630 AT2G18060.1 41.880 234 117 7 25 248 9 233 2.94e-49 166
Msa0996630 AT3G18400.1 52.229 157 68 4 22 173 2 156 4.24e-49 164
Msa0996630 AT1G01720.1 54.545 165 60 5 23 177 5 164 5.80e-49 163
Msa0996630 AT1G76420.1 49.102 167 78 3 9 169 6 171 6.63e-49 164
Msa0996630 AT5G46590.1 50.633 158 68 3 21 169 2 158 8.58e-49 162
Msa0996630 AT5G66300.1 50.909 165 69 5 15 170 2 163 3.82e-48 161
Msa0996630 AT3G12977.1 47.059 187 87 7 22 200 15 197 8.45e-48 160
Msa0996630 AT5G62380.2 53.205 156 62 5 23 170 5 157 8.59e-48 162
Msa0996630 AT5G62380.1 53.205 156 62 5 23 170 5 157 8.59e-48 162
Msa0996630 AT5G18270.2 51.613 155 66 3 23 169 19 172 1.34e-47 160
Msa0996630 AT4G27410.3 48.276 174 65 3 22 172 11 182 1.47e-47 160
Msa0996630 AT3G04060.1 52.903 155 64 4 23 169 18 171 1.51e-47 160
Msa0996630 AT3G17730.1 50.323 155 67 3 23 169 4 156 1.68e-47 158
Msa0996630 AT5G18270.1 51.613 155 66 3 23 169 19 172 2.66e-47 160
Msa0996630 AT5G63790.1 46.734 199 82 6 21 206 46 233 3.75e-47 159
Msa0996630 AT5G46590.2 50.345 145 66 2 21 160 2 145 4.61e-47 158
Msa0996630 AT1G52890.1 52.258 155 66 3 22 170 11 163 4.83e-47 159
Msa0996630 AT5G63790.2 46.734 199 82 6 21 206 56 243 4.86e-47 159
Msa0996630 AT1G71930.2 49.342 152 68 3 25 169 9 158 8.52e-47 158
Msa0996630 AT1G71930.1 49.342 152 68 3 25 169 9 158 8.52e-47 158
Msa0996630 AT4G36160.2 46.591 176 83 4 12 178 1 174 1.35e-46 159
Msa0996630 AT1G33060.1 52.288 153 63 3 25 169 24 174 1.37e-46 164
Msa0996630 AT1G33060.2 52.288 153 63 3 25 169 24 174 1.48e-46 164
Msa0996630 AT4G36160.1 49.080 163 72 4 25 178 10 170 1.61e-46 159
Msa0996630 AT4G36160.3 49.080 163 72 4 25 178 10 170 1.61e-46 159
Msa0996630 AT1G79580.3 49.682 157 70 3 21 170 13 167 1.90e-46 159
Msa0996630 AT1G79580.5 49.682 157 70 3 21 170 13 167 1.90e-46 159
Msa0996630 AT1G79580.4 49.682 157 70 3 21 170 13 167 1.90e-46 159
Msa0996630 AT1G79580.2 49.682 157 70 3 21 170 13 167 1.90e-46 159
Msa0996630 AT1G79580.1 49.682 157 70 3 21 170 13 167 1.90e-46 159
Msa0996630 AT1G52880.1 53.086 162 60 3 29 174 21 182 2.00e-46 157
Msa0996630 AT3G29035.1 47.191 178 82 4 22 191 21 194 3.82e-46 156
Msa0996630 AT4G17980.1 51.111 135 61 1 21 150 2 136 8.46e-46 154
Msa0996630 AT4G35580.2 47.917 192 80 6 25 206 9 190 8.83e-46 160
Msa0996630 AT4G35580.3 47.917 192 80 6 25 206 9 190 9.75e-46 160
Msa0996630 AT4G35580.1 47.917 192 80 6 25 206 9 190 9.93e-46 160
Msa0996630 AT4G17980.2 51.111 135 61 1 21 150 2 136 1.05e-45 154
Msa0996630 AT1G56010.2 43.617 188 86 5 22 199 16 193 1.26e-45 155
Msa0996630 AT3G61910.1 44.068 177 75 5 15 169 1 175 1.90e-45 155
Msa0996630 AT3G15500.1 51.613 155 67 3 22 170 11 163 2.69e-45 154
Msa0996630 AT1G32770.1 43.407 182 82 4 14 176 5 184 3.63e-45 155
Msa0996630 AT2G46770.1 44.944 178 74 4 15 170 6 181 4.33e-45 155
Msa0996630 AT2G33480.3 67.619 105 29 2 70 171 3 105 8.36e-45 150
Msa0996630 AT5G08790.1 52.174 161 61 5 22 170 4 160 8.47e-45 152
Msa0996630 AT3G10480.1 51.266 158 66 3 25 173 27 182 1.02e-44 156
Msa0996630 AT3G10490.1 50.633 158 67 3 25 173 27 182 1.31e-44 150
Msa0996630 AT3G10480.2 50.955 157 67 3 25 173 27 181 1.40e-43 153
Msa0996630 AT3G10490.2 50.633 158 67 3 25 173 27 182 5.36e-43 151
Msa0996630 AT3G10500.1 48.466 163 74 3 25 179 9 169 5.41e-43 153
Msa0996630 AT5G04410.1 49.693 163 72 3 25 179 9 169 5.65e-43 153
Msa0996630 AT1G34180.3 49.383 162 70 4 27 179 18 176 3.21e-42 149
Msa0996630 AT1G34190.1 49.693 163 68 5 27 179 18 176 5.85e-42 150
Msa0996630 AT5G39820.1 41.463 205 92 4 10 187 6 209 6.82e-42 146
Msa0996630 AT1G34180.1 49.383 162 70 4 27 179 18 176 1.67e-41 149
Msa0996630 AT4G28530.1 44.068 177 79 4 18 175 3 178 2.08e-41 145
Msa0996630 AT1G34180.4 45.977 174 70 4 27 179 18 188 4.09e-41 147
Msa0996630 AT3G49530.2 37.778 225 122 5 25 232 13 236 9.23e-41 145
Msa0996630 AT1G26870.1 37.449 243 119 7 7 225 7 240 1.07e-40 145
Msa0996630 AT1G34180.2 45.977 174 70 4 27 179 18 188 1.81e-40 147
Msa0996630 AT3G49530.1 37.778 225 122 5 25 232 13 236 2.13e-40 145
Msa0996630 AT3G10480.3 42.408 191 66 3 25 173 27 215 4.26e-40 145
Msa0996630 AT1G32510.1 44.444 171 80 4 25 181 6 175 6.87e-40 139
Msa0996630 AT5G24590.2 44.199 181 81 5 25 190 13 188 3.04e-39 141
Msa0996630 AT2G17040.1 48.980 147 69 3 27 169 8 152 3.91e-39 137
Msa0996630 AT5G64060.1 42.188 192 89 4 21 204 2 179 1.19e-38 138
Msa0996630 AT2G02450.1 54.762 126 53 2 27 149 53 177 3.27e-38 137
Msa0996630 AT2G02450.2 54.762 126 53 2 27 149 53 177 4.85e-38 137
Msa0996630 AT2G43000.1 47.973 148 68 4 27 167 20 165 9.42e-38 134
Msa0996630 AT3G12910.1 45.963 161 67 5 27 167 23 183 3.93e-37 132
Msa0996630 AT5G09330.5 42.051 195 89 5 21 206 2 181 8.25e-36 133
Msa0996630 AT5G09330.2 42.051 195 89 5 21 206 2 181 8.25e-36 133
Msa0996630 AT5G09330.4 42.051 195 89 5 21 206 2 181 8.25e-36 133
Msa0996630 AT5G09330.3 42.051 195 89 5 21 206 2 181 8.25e-36 133
Msa0996630 AT5G09330.1 42.051 195 89 5 21 206 2 181 8.25e-36 133
Msa0996630 AT5G22290.1 39.779 181 96 5 27 202 23 195 3.40e-35 128
Msa0996630 AT2G27300.1 45.255 137 69 2 25 157 14 148 8.01e-35 127
Msa0996630 AT5G04395.1 43.836 146 65 2 22 150 25 170 2.05e-34 122
Msa0996630 AT3G44290.2 46.457 127 62 2 27 149 16 140 4.31e-34 123
Msa0996630 AT3G44290.1 44.444 135 69 2 27 157 16 148 4.17e-33 123
Msa0996630 AT4G10350.2 53.535 99 41 2 75 170 18 114 9.57e-32 118
Msa0996630 AT5G64530.2 45.736 129 57 3 23 149 1 118 1.96e-31 114
Msa0996630 AT1G32870.3 43.850 187 88 6 3 179 27 206 2.53e-31 121
Msa0996630 AT1G32870.2 45.930 172 77 5 18 179 5 170 3.32e-31 120
Msa0996630 AT1G32870.1 45.930 172 77 5 18 179 5 170 4.19e-31 120
Msa0996630 AT5G64530.1 45.736 129 57 3 23 149 1 118 4.98e-31 114
Msa0996630 AT5G14000.1 37.349 166 97 4 17 179 7 168 4.38e-30 112
Msa0996630 AT5G61430.2 52.885 104 42 3 75 173 6 107 5.91e-30 113
Msa0996630 AT3G12977.2 44.961 129 64 4 76 200 19 144 1.01e-28 108
Msa0996630 AT1G56010.1 44.094 127 55 3 79 199 10 126 1.38e-28 109
Msa0996630 AT5G14000.2 39.456 147 84 3 18 161 8 152 2.49e-28 105
Msa0996630 AT5G50820.1 41.259 143 76 4 16 155 7 144 1.54e-27 105
Msa0996630 AT1G02230.1 44.286 140 67 5 26 157 4 140 1.12e-26 106
Msa0996630 AT4G01550.1 34.946 186 102 5 28 206 7 180 3.77e-25 103
Msa0996630 AT4G01520.1 42.537 134 69 4 26 151 5 138 1.32e-24 99.8
Msa0996630 AT1G02250.1 43.571 140 68 4 26 157 4 140 1.56e-24 100
Msa0996630 AT4G01540.4 43.182 132 67 4 28 151 7 138 3.30e-24 100
Msa0996630 AT4G01540.3 43.182 132 67 4 28 151 7 138 3.94e-24 100
Msa0996630 AT4G01540.2 43.182 132 67 4 28 151 7 138 4.04e-24 100
Msa0996630 AT4G01540.1 43.182 132 67 4 28 151 7 138 5.85e-24 100
Msa0996630 AT3G44350.1 39.568 139 73 4 25 154 5 141 6.26e-23 92.0
Msa0996630 AT3G44350.2 34.466 206 109 7 25 206 5 208 8.62e-23 93.6
Msa0996630 AT3G04420.2 42.636 129 65 4 26 147 4 130 3.58e-22 93.2
Msa0996630 AT5G22380.1 37.821 156 80 5 28 168 8 161 4.57e-22 91.7
Msa0996630 AT3G04420.1 42.636 129 65 4 26 147 4 130 5.56e-22 93.2
Msa0996630 AT4G28530.2 38.519 135 64 3 18 133 3 137 6.27e-21 90.1
Msa0996630 AT2G18060.2 37.255 153 83 5 100 248 2 145 2.12e-20 88.2
Msa0996630 AT1G02220.1 40.000 135 57 6 26 147 4 127 6.90e-20 88.2
Msa0996630 AT3G10490.4 48.193 83 37 2 95 173 2 82 9.16e-18 81.6
Msa0996630 AT3G10490.3 48.193 83 37 2 95 173 2 82 9.16e-18 81.6
Msa0996630 AT2G43000.2 47.059 85 39 3 87 167 5 87 3.73e-16 74.7
Msa0996630 AT1G01010.1 36.567 134 68 5 28 147 6 136 1.30e-15 75.9
Msa0996630 AT3G55210.1 32.370 173 89 8 25 176 11 176 4.60e-15 73.2
Msa0996630 AT5G22290.2 39.806 103 53 4 101 202 2 96 3.21e-13 67.8
Msa0996630 AT3G56530.1 32.168 143 83 5 22 155 49 186 6.38e-13 67.8
Msa0996630 AT5G14000.3 53.571 56 26 0 17 72 7 62 1.03e-12 66.6
Msa0996630 AT4G29230.3 30.387 181 95 9 23 176 46 222 9.71e-12 64.7
Msa0996630 AT4G29230.2 30.387 181 95 9 23 176 45 221 1.33e-11 64.3
Msa0996630 AT4G29230.1 30.387 181 95 9 23 176 46 222 1.34e-11 64.3
Msa0996630 AT5G56620.3 31.210 157 75 7 23 149 41 194 2.01e-11 63.5
Msa0996630 AT5G56620.1 31.210 157 75 7 23 149 41 194 2.08e-11 63.5
Msa0996630 AT5G56620.2 31.210 157 75 7 23 149 41 194 2.18e-11 63.5
Msa0996630 AT1G28470.1 31.792 173 92 11 25 175 77 245 2.26e-11 63.2
Msa0996630 AT4G28500.1 29.834 181 101 8 25 182 59 236 4.55e-11 62.0
Msa0996630 AT5G41090.1 26.708 161 96 5 25 170 8 161 5.46e-11 60.8

Find 70 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACCCCTTGAATGAAAAT+TGG 0.154078 6_4:+75179468 Msa0996630:CDS
TCCTTATCTTTACAAATAAA+AGG 0.208025 6_4:-75178845 None:intergenic
CCAAGCAGTGGCAGCAGTTT+TGG 0.254576 6_4:+75179563 Msa0996630:CDS
TTTACAGACCTAATAATAAA+AGG 0.264634 6_4:-75179747 None:intergenic
TCAGATTGCCGACCTCATTT+TGG 0.278938 6_4:-75179860 None:intergenic
ACTCAAGAGAATCTCTTAAA+AGG 0.291846 6_4:-75179980 None:intergenic
TAGACAGACCTAATAATAAA+AGG 0.323180 6_4:-75179805 None:intergenic
GAAAATAAAGAAATTCCATT+TGG 0.344178 6_4:-75179953 None:intergenic
CTGTCAGATCGGTTCCCATT+TGG 0.351135 6_4:-75179272 None:intergenic
CTCTTCAATCACAAATGAAT+TGG 0.353557 6_4:+75179676 Msa0996630:CDS
AAGAGATTCTCTTGAGTGTA+TGG 0.358090 6_4:+75179986 Msa0996630:three_prime_UTR
GAGGTACAAACTCTGGTTAC+TGG 0.358242 6_4:+75179294 Msa0996630:CDS
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 6_4:+75179023 Msa0996630:CDS
TCGGTTCCCATTTGGATACT+TGG 0.390108 6_4:-75179264 None:intergenic
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 6_4:+75179024 Msa0996630:CDS
CAACCCCTTGAATGAAAATT+GGG 0.412467 6_4:+75179469 Msa0996630:CDS
TCAAAGACTCATGAAGTTGT+TGG 0.413398 6_4:+75179350 Msa0996630:CDS
TAAAGATAAGGAAGATAAGA+TGG 0.428548 6_4:+75178856 Msa0996630:CDS
AAAGAAGCCAAGTATCCAAA+TGG 0.440359 6_4:+75179257 Msa0996630:CDS
ACTTCAGGAATGATGGAAAC+AGG 0.442694 6_4:-75178998 None:intergenic
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 6_4:+75179305 Msa0996630:CDS
AAGATCAACTTCAGGAATGA+TGG 0.456137 6_4:-75179005 None:intergenic
CTCAGATTCAAGTTCAAAAG+TGG 0.459591 6_4:+75179601 Msa0996630:CDS
TTACTGGAAAGCAACTGGTT+TGG 0.462280 6_4:+75179310 Msa0996630:CDS
ACAACAAGTTCTTCATCTGT+TGG 0.464543 6_4:-75178938 None:intergenic
GACTTGCAAAGATCAACTTC+AGG 0.465462 6_4:-75179013 None:intergenic
CTTCATCTGTTGGATGGAAA+CGG 0.472612 6_4:-75178928 None:intergenic
CCAAAACTGCTGCCACTGCT+TGG 0.485586 6_4:-75179563 None:intergenic
ATCTCAAATGTTCCAAAATG+AGG 0.487522 6_4:+75179848 Msa0996630:three_prime_UTR
TTCATTTGTGATTGAAGAGG+AGG 0.501069 6_4:-75179672 None:intergenic
CAAGTTCTTCATCTGTTGGA+TGG 0.505979 6_4:-75178934 None:intergenic
GTAATCTAAGAAAATCCAAA+TGG 0.507823 6_4:+75179938 Msa0996630:three_prime_UTR
CAGACCTAATAATAAAAGGA+TGG 0.512205 6_4:-75179743 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 6_4:-75179451 None:intergenic
CAGACCTAATAATAAAAGGA+TGG 0.518055 6_4:-75179801 None:intergenic
ATCTTTACAAATAAAAGGCA+TGG 0.532253 6_4:-75178840 None:intergenic
CTTCGTCTTACTATAAAAGA+AGG 0.542290 6_4:+75178796 Msa0996630:five_prime_UTR
AAGAAGCCAAGTATCCAAAT+GGG 0.544681 6_4:+75179258 Msa0996630:CDS
AAGAGAATCTCTTAAAAGGA+GGG 0.546300 6_4:-75179976 None:intergenic
CAATTCATTTGTGATTGAAG+AGG 0.547382 6_4:-75179675 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 6_4:+75179411 Msa0996630:CDS
TGTTCAATACTTGAAGCGTA+AGG 0.553435 6_4:+75178958 Msa0996630:CDS
ATTCAAGGGGTTGGAGTGAG+AGG 0.553608 6_4:-75179459 None:intergenic
CAAGAGAATCTCTTAAAAGG+AGG 0.555009 6_4:-75179977 None:intergenic
AGACCTAATAATAAAAGGAT+GGG 0.565706 6_4:-75179742 None:intergenic
AGACCTAATAATAAAAGGAT+GGG 0.565706 6_4:-75179800 None:intergenic
TGTATCGCATATTTCTGAAG+AGG 0.567081 6_4:+75179495 Msa0996630:CDS
AATCGAGAGGAGACAGTGAA+AGG 0.569341 6_4:+75179533 Msa0996630:CDS
TCTGATCCTTGGGATTTACC+TGG 0.570788 6_4:+75179034 Msa0996630:CDS
CGACATTTGTTTGAGTTGAG+TGG 0.572964 6_4:-75178751 None:intergenic
TACAGAGGCAAACCACCTCA+TGG 0.581454 6_4:+75179395 Msa0996630:CDS
GGAATGATGGAAACAGGTAA+AGG 0.582679 6_4:-75178992 None:intergenic
TCTGACAGAGGTACAAACTC+TGG 0.582841 6_4:+75179287 Msa0996630:CDS
AGAGAATCTCTTAAAAGGAG+GGG 0.586388 6_4:-75179975 None:intergenic
AGTTTGTACCTCTGTCAGAT+CGG 0.588797 6_4:-75179283 None:intergenic
GTTGGATGGAAACGGAAACC+TGG 0.589751 6_4:-75178920 None:intergenic
CGCATATTTCTGAAGAGGAG+AGG 0.600967 6_4:+75179500 Msa0996630:CDS
AAAGGAGTGAAGCCAAGCAG+TGG 0.603258 6_4:+75179551 Msa0996630:CDS
TCAGTTCTTGAACCATGAGG+TGG 0.615010 6_4:-75179407 None:intergenic
CAAATGTTCCAAAATGAGGT+CGG 0.618561 6_4:+75179852 Msa0996630:three_prime_UTR
TACATACCAGGTAAATCCCA+AGG 0.624010 6_4:-75179040 None:intergenic
ATGCGGGTATATTAGAATCA+CGG 0.629855 6_4:-75180089 None:intergenic
TGTATGGTATGTCACAATCA+TGG 0.638772 6_4:+75180002 Msa0996630:three_prime_UTR
GGTGAAGTTAGATTGCCACC+AGG 0.651695 6_4:+75178902 Msa0996630:CDS
AGGTGGTGCTATAAATCGAG+AGG 0.661415 6_4:+75179520 Msa0996630:CDS
TAGGTGATATGGAACAAGAG+AGG 0.664397 6_4:+75179219 Msa0996630:intron
ATATTTCTGAAGAGGAGAGG+TGG 0.674268 6_4:+75179503 Msa0996630:CDS
CAATCAGTTCTTGAACCATG+AGG 0.707588 6_4:-75179410 None:intergenic
AATGGGAACCGATCTGACAG+AGG 0.720450 6_4:+75179275 Msa0996630:CDS
GGATGGAAACGGAAACCTGG+TGG 0.781347 6_4:-75178917 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTGGATAAATCAATA+TGG - chr6_4:75180032-75180051 None:intergenic 15.0%
!!! TATTTTTGGATAAATCAATA+TGG - chr6_4:75180032-75180051 None:intergenic 15.0%
!! TCCTTATCTTTACAAATAAA+AGG - chr6_4:75178848-75178867 None:intergenic 20.0%
!! TTTACAGACCTAATAATAAA+AGG - chr6_4:75179750-75179769 None:intergenic 20.0%
!! GAAAATAAAGAAATTCCATT+TGG - chr6_4:75179956-75179975 None:intergenic 20.0%
!!! AGAAGTTATAAGTGTATTTT+TGG - chr6_4:75180046-75180065 None:intergenic 20.0%
!! TCCTTATCTTTACAAATAAA+AGG - chr6_4:75178848-75178867 None:intergenic 20.0%
!! TTTACAGACCTAATAATAAA+AGG - chr6_4:75179750-75179769 None:intergenic 20.0%
!! GAAAATAAAGAAATTCCATT+TGG - chr6_4:75179956-75179975 None:intergenic 20.0%
!!! AGAAGTTATAAGTGTATTTT+TGG - chr6_4:75180046-75180065 None:intergenic 20.0%
! ATCTTTACAAATAAAAGGCA+TGG - chr6_4:75178843-75178862 None:intergenic 25.0%
!!! GCCTTTTATTTGTAAAGATA+AGG + chr6_4:75178844-75178863 Msa0996630:CDS 25.0%
! TAAAGATAAGGAAGATAAGA+TGG + chr6_4:75178856-75178875 Msa0996630:CDS 25.0%
!! AAGATGAATTTTGTGAAGAA+TGG + chr6_4:75178881-75178900 Msa0996630:CDS 25.0%
! ATGAACGAAAAAGAAAAGAA+AGG - chr6_4:75179067-75179086 None:intergenic 25.0%
! AGACCTAATAATAAAAGGAT+GGG - chr6_4:75179745-75179764 None:intergenic 25.0%
! AGACCTAATAATAAAAGGAT+GGG - chr6_4:75179745-75179764 None:intergenic 25.0%
! TAGACAGACCTAATAATAAA+AGG - chr6_4:75179808-75179827 None:intergenic 25.0%
! GTAATCTAAGAAAATCCAAA+TGG + chr6_4:75179938-75179957 Msa0996630:three_prime_UTR 25.0%
! ATCTTTACAAATAAAAGGCA+TGG - chr6_4:75178843-75178862 None:intergenic 25.0%
!!! GCCTTTTATTTGTAAAGATA+AGG + chr6_4:75178844-75178863 Msa0996630:CDS 25.0%
! TAAAGATAAGGAAGATAAGA+TGG + chr6_4:75178856-75178875 Msa0996630:CDS 25.0%
!! AAGATGAATTTTGTGAAGAA+TGG + chr6_4:75178881-75178900 Msa0996630:CDS 25.0%
! ATGAACGAAAAAGAAAAGAA+AGG - chr6_4:75179067-75179086 None:intergenic 25.0%
! AGACCTAATAATAAAAGGAT+GGG - chr6_4:75179745-75179764 None:intergenic 25.0%
! AGACCTAATAATAAAAGGAT+GGG - chr6_4:75179745-75179764 None:intergenic 25.0%
! TAGACAGACCTAATAATAAA+AGG - chr6_4:75179808-75179827 None:intergenic 25.0%
! GTAATCTAAGAAAATCCAAA+TGG + chr6_4:75179938-75179957 Msa0996630:three_prime_UTR 25.0%
CTTCGTCTTACTATAAAAGA+AGG + chr6_4:75178796-75178815 Msa0996630:five_prime_UTR 30.0%
TAGAAGAAGTTATCATGTTC+CGG - chr6_4:75179150-75179169 None:intergenic 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG + chr6_4:75179380-75179399 Msa0996630:CDS 30.0%
! AGAACCCAATTTTCATTCAA+GGG - chr6_4:75179476-75179495 None:intergenic 30.0%
CAATTCATTTGTGATTGAAG+AGG - chr6_4:75179678-75179697 None:intergenic 30.0%
CTCTTCAATCACAAATGAAT+TGG + chr6_4:75179676-75179695 Msa0996630:CDS 30.0%
CAGACCTAATAATAAAAGGA+TGG - chr6_4:75179746-75179765 None:intergenic 30.0%
CAGACCTAATAATAAAAGGA+TGG - chr6_4:75179746-75179765 None:intergenic 30.0%
ATCTCAAATGTTCCAAAATG+AGG + chr6_4:75179848-75179867 Msa0996630:three_prime_UTR 30.0%
AAGAGAATCTCTTAAAAGGA+GGG - chr6_4:75179979-75179998 None:intergenic 30.0%
ACTCAAGAGAATCTCTTAAA+AGG - chr6_4:75179983-75180002 None:intergenic 30.0%
CTTCGTCTTACTATAAAAGA+AGG + chr6_4:75178796-75178815 Msa0996630:five_prime_UTR 30.0%
TAGAAGAAGTTATCATGTTC+CGG - chr6_4:75179150-75179169 None:intergenic 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG + chr6_4:75179380-75179399 Msa0996630:CDS 30.0%
! AGAACCCAATTTTCATTCAA+GGG - chr6_4:75179476-75179495 None:intergenic 30.0%
CAATTCATTTGTGATTGAAG+AGG - chr6_4:75179678-75179697 None:intergenic 30.0%
CTCTTCAATCACAAATGAAT+TGG + chr6_4:75179676-75179695 Msa0996630:CDS 30.0%
CAGACCTAATAATAAAAGGA+TGG - chr6_4:75179746-75179765 None:intergenic 30.0%
CAGACCTAATAATAAAAGGA+TGG - chr6_4:75179746-75179765 None:intergenic 30.0%
ATCTCAAATGTTCCAAAATG+AGG + chr6_4:75179848-75179867 Msa0996630:three_prime_UTR 30.0%
AAGAGAATCTCTTAAAAGGA+GGG - chr6_4:75179979-75179998 None:intergenic 30.0%
ACTCAAGAGAATCTCTTAAA+AGG - chr6_4:75179983-75180002 None:intergenic 30.0%
ACAACAAGTTCTTCATCTGT+TGG - chr6_4:75178941-75178960 None:intergenic 35.0%
TGTTCAATACTTGAAGCGTA+AGG + chr6_4:75178958-75178977 Msa0996630:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG - chr6_4:75179008-75179027 None:intergenic 35.0%
GAAAAGAAAGGTTACATACC+AGG - chr6_4:75179055-75179074 None:intergenic 35.0%
!! TGGTGTTCTTTTAGGTGATA+TGG + chr6_4:75179208-75179227 Msa0996630:intron 35.0%
AAAGAAGCCAAGTATCCAAA+TGG + chr6_4:75179257-75179276 Msa0996630:CDS 35.0%
AAGAAGCCAAGTATCCAAAT+GGG + chr6_4:75179258-75179277 Msa0996630:CDS 35.0%
TCAAAGACTCATGAAGTTGT+TGG + chr6_4:75179350-75179369 Msa0996630:CDS 35.0%
CAACCCCTTGAATGAAAATT+GGG + chr6_4:75179469-75179488 Msa0996630:CDS 35.0%
! GAACCCAATTTTCATTCAAG+GGG - chr6_4:75179475-75179494 None:intergenic 35.0%
! CAGAACCCAATTTTCATTCA+AGG - chr6_4:75179477-75179496 None:intergenic 35.0%
! TGTATCGCATATTTCTGAAG+AGG + chr6_4:75179495-75179514 Msa0996630:CDS 35.0%
! CTCAGATTCAAGTTCAAAAG+TGG + chr6_4:75179601-75179620 Msa0996630:CDS 35.0%
TTCATTTGTGATTGAAGAGG+AGG - chr6_4:75179675-75179694 None:intergenic 35.0%
! GCTCCCATCCTTTTATTATT+AGG + chr6_4:75179739-75179758 Msa0996630:CDS 35.0%
! GCTCCCATCCTTTTATTATT+AGG + chr6_4:75179739-75179758 Msa0996630:CDS 35.0%
CAAATGTTCCAAAATGAGGT+CGG + chr6_4:75179852-75179871 Msa0996630:three_prime_UTR 35.0%
AGAGAATCTCTTAAAAGGAG+GGG - chr6_4:75179978-75179997 None:intergenic 35.0%
CAAGAGAATCTCTTAAAAGG+AGG - chr6_4:75179980-75179999 None:intergenic 35.0%
AAGAGATTCTCTTGAGTGTA+TGG + chr6_4:75179986-75180005 Msa0996630:three_prime_UTR 35.0%
TGTATGGTATGTCACAATCA+TGG + chr6_4:75180002-75180021 Msa0996630:three_prime_UTR 35.0%
ACAACAAGTTCTTCATCTGT+TGG - chr6_4:75178941-75178960 None:intergenic 35.0%
TGTTCAATACTTGAAGCGTA+AGG + chr6_4:75178958-75178977 Msa0996630:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG - chr6_4:75179008-75179027 None:intergenic 35.0%
GAAAAGAAAGGTTACATACC+AGG - chr6_4:75179055-75179074 None:intergenic 35.0%
!! TGGTGTTCTTTTAGGTGATA+TGG + chr6_4:75179208-75179227 Msa0996630:intron 35.0%
AAAGAAGCCAAGTATCCAAA+TGG + chr6_4:75179257-75179276 Msa0996630:CDS 35.0%
AAGAAGCCAAGTATCCAAAT+GGG + chr6_4:75179258-75179277 Msa0996630:CDS 35.0%
TCAAAGACTCATGAAGTTGT+TGG + chr6_4:75179350-75179369 Msa0996630:CDS 35.0%
CAACCCCTTGAATGAAAATT+GGG + chr6_4:75179469-75179488 Msa0996630:CDS 35.0%
! GAACCCAATTTTCATTCAAG+GGG - chr6_4:75179475-75179494 None:intergenic 35.0%
! CAGAACCCAATTTTCATTCA+AGG - chr6_4:75179477-75179496 None:intergenic 35.0%
! TGTATCGCATATTTCTGAAG+AGG + chr6_4:75179495-75179514 Msa0996630:CDS 35.0%
! CTCAGATTCAAGTTCAAAAG+TGG + chr6_4:75179601-75179620 Msa0996630:CDS 35.0%
TTCATTTGTGATTGAAGAGG+AGG - chr6_4:75179675-75179694 None:intergenic 35.0%
! GCTCCCATCCTTTTATTATT+AGG + chr6_4:75179739-75179758 Msa0996630:CDS 35.0%
! GCTCCCATCCTTTTATTATT+AGG + chr6_4:75179739-75179758 Msa0996630:CDS 35.0%
CAAATGTTCCAAAATGAGGT+CGG + chr6_4:75179852-75179871 Msa0996630:three_prime_UTR 35.0%
AGAGAATCTCTTAAAAGGAG+GGG - chr6_4:75179978-75179997 None:intergenic 35.0%
CAAGAGAATCTCTTAAAAGG+AGG - chr6_4:75179980-75179999 None:intergenic 35.0%
AAGAGATTCTCTTGAGTGTA+TGG + chr6_4:75179986-75180005 Msa0996630:three_prime_UTR 35.0%
TGTATGGTATGTCACAATCA+TGG + chr6_4:75180002-75180021 Msa0996630:three_prime_UTR 35.0%
!! CGACATTTGTTTGAGTTGAG+TGG - chr6_4:75178754-75178773 None:intergenic 40.0%
CTTCATCTGTTGGATGGAAA+CGG - chr6_4:75178931-75178950 None:intergenic 40.0%
CAAGTTCTTCATCTGTTGGA+TGG - chr6_4:75178937-75178956 None:intergenic 40.0%
! GGAATGATGGAAACAGGTAA+AGG - chr6_4:75178995-75179014 None:intergenic 40.0%
! ACTTCAGGAATGATGGAAAC+AGG - chr6_4:75179001-75179020 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG - chr6_4:75179016-75179035 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG + chr6_4:75179023-75179042 Msa0996630:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG + chr6_4:75179024-75179043 Msa0996630:CDS 40.0%
TACATACCAGGTAAATCCCA+AGG - chr6_4:75179043-75179062 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG + chr6_4:75179170-75179189 Msa0996630:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG + chr6_4:75179219-75179238 Msa0996630:intron 40.0%
AGTTTGTACCTCTGTCAGAT+CGG - chr6_4:75179286-75179305 None:intergenic 40.0%
TTACTGGAAAGCAACTGGTT+TGG + chr6_4:75179310-75179329 Msa0996630:CDS 40.0%
CAATCAGTTCTTGAACCATG+AGG - chr6_4:75179413-75179432 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG + chr6_4:75179411-75179430 Msa0996630:CDS 40.0%
! CCAATTTTCATTCAAGGGGT+TGG - chr6_4:75179471-75179490 None:intergenic 40.0%
CCAACCCCTTGAATGAAAAT+TGG + chr6_4:75179468-75179487 Msa0996630:CDS 40.0%
! ATATTTCTGAAGAGGAGAGG+TGG + chr6_4:75179503-75179522 Msa0996630:CDS 40.0%
!! CGACATTTGTTTGAGTTGAG+TGG - chr6_4:75178754-75178773 None:intergenic 40.0%
CTTCATCTGTTGGATGGAAA+CGG - chr6_4:75178931-75178950 None:intergenic 40.0%
CAAGTTCTTCATCTGTTGGA+TGG - chr6_4:75178937-75178956 None:intergenic 40.0%
! GGAATGATGGAAACAGGTAA+AGG - chr6_4:75178995-75179014 None:intergenic 40.0%
! ACTTCAGGAATGATGGAAAC+AGG - chr6_4:75179001-75179020 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG - chr6_4:75179016-75179035 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG + chr6_4:75179023-75179042 Msa0996630:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG + chr6_4:75179024-75179043 Msa0996630:CDS 40.0%
TACATACCAGGTAAATCCCA+AGG - chr6_4:75179043-75179062 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG + chr6_4:75179170-75179189 Msa0996630:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG + chr6_4:75179219-75179238 Msa0996630:intron 40.0%
AGTTTGTACCTCTGTCAGAT+CGG - chr6_4:75179286-75179305 None:intergenic 40.0%
TTACTGGAAAGCAACTGGTT+TGG + chr6_4:75179310-75179329 Msa0996630:CDS 40.0%
CAATCAGTTCTTGAACCATG+AGG - chr6_4:75179413-75179432 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG + chr6_4:75179411-75179430 Msa0996630:CDS 40.0%
! CCAATTTTCATTCAAGGGGT+TGG - chr6_4:75179471-75179490 None:intergenic 40.0%
CCAACCCCTTGAATGAAAAT+TGG + chr6_4:75179468-75179487 Msa0996630:CDS 40.0%
! ATATTTCTGAAGAGGAGAGG+TGG + chr6_4:75179503-75179522 Msa0996630:CDS 40.0%
TCTGATCCTTGGGATTTACC+TGG + chr6_4:75179034-75179053 Msa0996630:CDS 45.0%
ACACTGACACATTCGAACAC+CGG + chr6_4:75179128-75179147 Msa0996630:intron 45.0%
!! TGTGGATTGATTTGAGCGTG+TGG + chr6_4:75179188-75179207 Msa0996630:intron 45.0%
! TGAGCGTGTGGTGTTCTTTT+AGG + chr6_4:75179200-75179219 Msa0996630:intron 45.0%
TCGGTTCCCATTTGGATACT+TGG - chr6_4:75179267-75179286 None:intergenic 45.0%
! TCTGACAGAGGTACAAACTC+TGG + chr6_4:75179287-75179306 Msa0996630:CDS 45.0%
GAGGTACAAACTCTGGTTAC+TGG + chr6_4:75179294-75179313 Msa0996630:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG + chr6_4:75179305-75179324 Msa0996630:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG - chr6_4:75179410-75179429 None:intergenic 45.0%
! CGCATATTTCTGAAGAGGAG+AGG + chr6_4:75179500-75179519 Msa0996630:CDS 45.0%
!! AGGTGGTGCTATAAATCGAG+AGG + chr6_4:75179520-75179539 Msa0996630:CDS 45.0%
AATCGAGAGGAGACAGTGAA+AGG + chr6_4:75179533-75179552 Msa0996630:CDS 45.0%
! TCAGATTGCCGACCTCATTT+TGG - chr6_4:75179863-75179882 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG + chr6_4:75179034-75179053 Msa0996630:CDS 45.0%
ACACTGACACATTCGAACAC+CGG + chr6_4:75179128-75179147 Msa0996630:intron 45.0%
!! TGTGGATTGATTTGAGCGTG+TGG + chr6_4:75179188-75179207 Msa0996630:intron 45.0%
! TGAGCGTGTGGTGTTCTTTT+AGG + chr6_4:75179200-75179219 Msa0996630:intron 45.0%
TCGGTTCCCATTTGGATACT+TGG - chr6_4:75179267-75179286 None:intergenic 45.0%
! TCTGACAGAGGTACAAACTC+TGG + chr6_4:75179287-75179306 Msa0996630:CDS 45.0%
GAGGTACAAACTCTGGTTAC+TGG + chr6_4:75179294-75179313 Msa0996630:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG + chr6_4:75179305-75179324 Msa0996630:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG - chr6_4:75179410-75179429 None:intergenic 45.0%
! CGCATATTTCTGAAGAGGAG+AGG + chr6_4:75179500-75179519 Msa0996630:CDS 45.0%
!! AGGTGGTGCTATAAATCGAG+AGG + chr6_4:75179520-75179539 Msa0996630:CDS 45.0%
AATCGAGAGGAGACAGTGAA+AGG + chr6_4:75179533-75179552 Msa0996630:CDS 45.0%
! TCAGATTGCCGACCTCATTT+TGG - chr6_4:75179863-75179882 None:intergenic 45.0%
GGTGAAGTTAGATTGCCACC+AGG + chr6_4:75178902-75178921 Msa0996630:CDS 50.0%
GTTGGATGGAAACGGAAACC+TGG - chr6_4:75178923-75178942 None:intergenic 50.0%
GAAGCAGACACGACACAACA+TGG + chr6_4:75179105-75179124 Msa0996630:intron 50.0%
! CTGTCAGATCGGTTCCCATT+TGG - chr6_4:75179275-75179294 None:intergenic 50.0%
AATGGGAACCGATCTGACAG+AGG + chr6_4:75179275-75179294 Msa0996630:CDS 50.0%
TACAGAGGCAAACCACCTCA+TGG + chr6_4:75179395-75179414 Msa0996630:CDS 50.0%
ATTCAAGGGGTTGGAGTGAG+AGG - chr6_4:75179462-75179481 None:intergenic 50.0%
AAAGGAGTGAAGCCAAGCAG+TGG + chr6_4:75179551-75179570 Msa0996630:CDS 50.0%
GGTGAAGTTAGATTGCCACC+AGG + chr6_4:75178902-75178921 Msa0996630:CDS 50.0%
GTTGGATGGAAACGGAAACC+TGG - chr6_4:75178923-75178942 None:intergenic 50.0%
GAAGCAGACACGACACAACA+TGG + chr6_4:75179105-75179124 Msa0996630:intron 50.0%
! CTGTCAGATCGGTTCCCATT+TGG - chr6_4:75179275-75179294 None:intergenic 50.0%
AATGGGAACCGATCTGACAG+AGG + chr6_4:75179275-75179294 Msa0996630:CDS 50.0%
TACAGAGGCAAACCACCTCA+TGG + chr6_4:75179395-75179414 Msa0996630:CDS 50.0%
ATTCAAGGGGTTGGAGTGAG+AGG - chr6_4:75179462-75179481 None:intergenic 50.0%
AAAGGAGTGAAGCCAAGCAG+TGG + chr6_4:75179551-75179570 Msa0996630:CDS 50.0%
GGATGGAAACGGAAACCTGG+TGG - chr6_4:75178920-75178939 None:intergenic 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG - chr6_4:75179454-75179473 None:intergenic 55.0%
CCAAAACTGCTGCCACTGCT+TGG - chr6_4:75179566-75179585 None:intergenic 55.0%
! CCAAGCAGTGGCAGCAGTTT+TGG + chr6_4:75179563-75179582 Msa0996630:CDS 55.0%
!! CAGTGGCAGCAGTTTTGGTG+AGG + chr6_4:75179568-75179587 Msa0996630:CDS 55.0%
GGATGGAAACGGAAACCTGG+TGG - chr6_4:75178920-75178939 None:intergenic 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG - chr6_4:75179454-75179473 None:intergenic 55.0%
CCAAAACTGCTGCCACTGCT+TGG - chr6_4:75179566-75179585 None:intergenic 55.0%
! CCAAGCAGTGGCAGCAGTTT+TGG + chr6_4:75179563-75179582 Msa0996630:CDS 55.0%
!! CAGTGGCAGCAGTTTTGGTG+AGG + chr6_4:75179568-75179587 Msa0996630:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 75178745 75180099 75178745 ID=Msa0996630;Name=Msa0996630
chr6_4 mRNA 75178745 75180099 75178745 ID=Msa0996630-mRNA-1;Parent=Msa0996630;Name=Msa0996630-mRNA-1;_AED=0.06;_eAED=0.06;_QI=97|1|1|1|1|1|2|339|250
chr6_4 exon 75178745 75179055 75178745 ID=Msa0996630-mRNA-1:exon:14025;Parent=Msa0996630-mRNA-1
chr6_4 exon 75179222 75180099 75179222 ID=Msa0996630-mRNA-1:exon:14026;Parent=Msa0996630-mRNA-1
chr6_4 five_prime_UTR 75178745 75178841 75178745 ID=Msa0996630-mRNA-1:five_prime_utr;Parent=Msa0996630-mRNA-1
chr6_4 CDS 75178842 75179055 75178842 ID=Msa0996630-mRNA-1:cds;Parent=Msa0996630-mRNA-1
chr6_4 CDS 75179222 75179760 75179222 ID=Msa0996630-mRNA-1:cds;Parent=Msa0996630-mRNA-1
chr6_4 three_prime_UTR 75179761 75180099 75179761 ID=Msa0996630-mRNA-1:three_prime_utr;Parent=Msa0996630-mRNA-1
Gene Sequence

>Msa0996630

ATGCCTTTTATTTGTAAAGATAAGGAAGATAAGATGGAGAAGATGAATTTTGTGAAGAATGGTGAAGTTAGATTGCCACCAGGTTTCCGTTTCCATCCAACAGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTATTCTCTTTTCCTTTACCTGTTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACAAAAGAAGCCAAGTATCCAAATGGGAACCGATCTGACAGAGGTACAAACTCTGGTTACTGGAAAGCAACTGGTTTGGACAAACAAATCATGAATTCAAAGACTCATGAAGTTGTTGGCATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGAATGAAAATTGGGTTCTGTATCGCATATTTCTGAAGAGGAGAGGTGGTGCTATAAATCGAGAGGAGACAGTGAAAGGAGTGAAGCCAAGCAGTGGCAGCAGTTTTGGTGAGGTGAAGAAGAACTCAGATTCAAGTTCAAAAGTGGTTGTTTTCTACGATTTCTTCGCAGAGAAGAAGAACAATTCTGATGCATCCTCCTCTTCAATCACAAATGAATTGGCTGAACATGAAAATGAAGACAGCAGTAACTCATTCACAGTGCTCCCATCCTTTTATTATTAG
Protein sequence

>Msa0996630

MPFICKDKEDKMEKMNFVKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSFPLPVSIIPEVDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGNRSDRGTNSGYWKATGLDKQIMNSKTHEVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLYRIFLKRRGGAINREETVKGVKPSSGSSFGEVKKNSDSSSKVVVFYDFFAEKKNNSDASSSSITNELAEHENEDSSNSFTVLPSFYY*