AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0998350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998350 MtrunA17_Chr6g0463571 98.065 310 6 0 1 310 1 310 0.0 621
Msa0998350 MtrunA17_Chr5g0432701 52.459 244 84 9 26 261 49 268 6.58e-61 197
Msa0998350 MtrunA17_Chr3g0107491 44.369 293 107 14 26 281 36 309 1.30e-51 174
Msa0998350 MtrunA17_Chr4g0036071 57.714 175 66 3 76 243 279 452 2.13e-49 171
Msa0998350 MtrunA17_Chr3g0128781 49.541 218 84 6 28 243 7 200 4.00e-49 166
Msa0998350 MtrunA17_Chr2g0329551 57.143 168 57 4 107 260 168 334 4.71e-47 163
Msa0998350 MtrunA17_Chr1g0156051 47.273 220 97 7 74 281 303 515 1.59e-33 129
Msa0998350 MtrunA17_Chr2g0316551 49.474 95 48 0 149 243 206 300 1.41e-20 90.5
Msa0998350 MtrunA17_Chr4g0040891 43.103 116 59 1 149 257 192 307 8.86e-19 85.1
Msa0998350 MtrunA17_Chr2g0325131 47.000 100 53 0 149 248 189 288 8.93e-19 85.5
Msa0998350 MtrunA17_Chr1g0202051 35.000 220 126 6 31 245 11 218 3.83e-18 82.8
Msa0998350 MtrunA17_Chr8g0380611 30.153 262 141 11 11 244 75 322 1.35e-13 70.5
Msa0998350 MtrunA17_Chr2g0306581 65.306 49 17 0 139 187 1 49 2.63e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998350 AT1G43700.1 45.345 333 123 13 8 287 6 332 1.42e-66 212
Msa0998350 AT2G31370.5 60.479 167 55 3 109 265 151 316 8.17e-51 172
Msa0998350 AT2G31370.2 60.479 167 55 3 109 265 151 316 2.05e-50 172
Msa0998350 AT2G31370.4 60.479 167 55 3 109 265 151 316 2.05e-50 172
Msa0998350 AT2G31370.1 60.479 167 55 3 109 265 151 316 2.05e-50 172
Msa0998350 AT2G31370.7 60.479 167 55 3 109 265 151 316 2.05e-50 172
Msa0998350 AT2G31370.3 60.479 167 55 3 109 265 151 316 2.05e-50 172
Msa0998350 AT2G31370.6 60.479 167 55 3 109 265 151 316 2.05e-50 172
Msa0998350 AT2G40620.1 46.000 250 110 8 2 243 8 240 4.23e-49 167
Msa0998350 AT4G38900.2 55.497 191 62 5 73 243 299 486 4.32e-49 172
Msa0998350 AT4G38900.3 55.497 191 62 5 73 243 299 486 4.32e-49 172
Msa0998350 AT4G38900.1 53.807 197 62 6 73 243 299 492 1.35e-46 165
Msa0998350 AT1G06070.1 54.598 174 63 3 109 273 159 325 1.17e-45 160
Msa0998350 AT1G06850.1 62.791 129 47 1 123 251 121 248 2.85e-45 157
Msa0998350 AT2G21230.4 54.444 180 66 3 76 243 287 462 1.47e-44 159
Msa0998350 AT2G21230.1 54.444 180 66 3 76 243 287 462 1.47e-44 159
Msa0998350 AT2G21230.3 52.688 186 66 4 76 243 287 468 2.60e-42 153
Msa0998350 AT2G21230.2 53.846 169 62 3 76 232 287 451 3.57e-40 146
Msa0998350 AT1G06850.2 72.152 79 21 1 123 201 121 198 8.13e-28 108
Msa0998350 AT2G13150.1 35.503 169 93 4 83 244 83 242 6.74e-19 84.7
Msa0998350 AT2G42380.2 46.465 99 53 0 149 247 184 282 8.02e-19 85.5
Msa0998350 AT3G58120.1 47.368 95 50 0 149 243 200 294 1.43e-18 85.1
Msa0998350 AT2G12940.1 32.597 181 108 5 83 260 82 251 1.65e-17 81.6
Msa0998350 AT2G12900.1 38.235 102 62 1 143 244 109 209 3.09e-16 77.4
Msa0998350 AT2G42380.5 45.238 84 46 0 149 232 184 267 5.47e-15 73.9
Msa0998350 AT3G58120.2 45.679 81 44 0 149 229 200 280 5.44e-14 71.2
Msa0998350 AT1G58110.1 28.571 252 135 7 22 244 87 322 5.18e-13 69.3
Msa0998350 AT1G58110.2 28.571 252 135 7 22 244 87 322 5.18e-13 69.3
Msa0998350 AT2G21235.1 38.235 102 62 1 151 252 359 459 1.28e-12 68.6
Msa0998350 AT2G42380.1 41.414 99 47 1 149 247 184 271 1.46e-12 67.4
Msa0998350 AT2G42380.3 64.444 45 16 0 149 193 184 228 1.78e-11 63.5
Msa0998350 AT2G42380.4 64.444 45 16 0 149 193 184 228 1.78e-11 63.5

Find 109 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGTATCTTCTACTGTTTA+AGG 0.233915 6_4:-79210029 Msa0998350:three_prime_UTR
GCATGCCAGGTTGTGTCTGC+TGG 0.238257 6_4:+79210241 None:intergenic
AAGACAATTTCCTCAACTTT+AGG 0.254590 6_4:-79215721 Msa0998350:five_prime_UTR
CTGAGTGGGAACGGCGGTGG+TGG 0.309521 6_4:+79215406 None:intergenic
TTGATTATAGATGGTGGTTA+TGG 0.327249 6_4:-79209884 Msa0998350:three_prime_UTR
TTGATCCTAAGAGAGCTAAA+AGG 0.339939 6_4:-79215035 Msa0998350:intron
CATAAAACATCATAGGATTA+AGG 0.340128 6_4:+79210048 None:intergenic
TGATTTGACTGCTCAGAATA+AGG 0.343859 6_4:-79210969 Msa0998350:CDS
AATCATTTGGCTGCCGTTGC+CGG 0.347670 6_4:-79210339 Msa0998350:CDS
GGGTTAGGGTTTGGTGGTGA+AGG 0.352329 6_4:-79215195 Msa0998350:CDS
TGCAGAAAGTACAAAATAAT+AGG 0.358743 6_4:+79209995 None:intergenic
CCCGTTAAATGAAGGATTAC+CGG 0.363659 6_4:+79210320 None:intergenic
AAGAACTAGTTGATTATAGA+TGG 0.363951 6_4:-79209893 Msa0998350:three_prime_UTR
TGTTGTATACGATCTACTTT+TGG 0.365809 6_4:+79210154 None:intergenic
CAACATCAAAGTAAATGATT+TGG 0.375439 6_4:-79210136 Msa0998350:three_prime_UTR
GCCGGTAATCCTTCATTTAA+CGG 0.378261 6_4:-79210321 Msa0998350:CDS
TATATATACAACATGTTACT+TGG 0.381317 6_4:+79210095 None:intergenic
TTTGATGGGTTAGGGTTTGG+TGG 0.386396 6_4:-79215201 Msa0998350:CDS
TGCACAACTTACAGTCCTTC+AGG 0.397567 6_4:-79213358 Msa0998350:intron
AGAAAGAACTTCAACGCCTT+AGG 0.400050 6_4:-79210371 Msa0998350:CDS
CCGGTAATCCTTCATTTAAC+GGG 0.400994 6_4:-79210320 Msa0998350:CDS
TCGTGGTCGCTCTAACTTCA+TGG 0.412681 6_4:-79210187 Msa0998350:CDS
ACAGCGTCAGGGGACGGGAG+AGG 0.412739 6_4:+79215306 None:intergenic
TTGGAACTTGGAAGTGGTGG+TGG 0.413409 6_4:+79215563 None:intergenic
GTTTGGTGGTGAAGGGGAAA+AGG 0.416147 6_4:-79215187 Msa0998350:CDS
GAACTTGGAAGTGGTGGTGG+TGG 0.419234 6_4:+79215566 None:intergenic
GTTAGGGTTTGGTGGTGAAG+GGG 0.427763 6_4:-79215193 Msa0998350:CDS
CAGCGTCAGGGGACGGGAGA+GGG 0.430362 6_4:+79215307 None:intergenic
TGAGTGGGAACGGCGGTGGT+GGG 0.433218 6_4:+79215407 None:intergenic
CATGCCAGGTTGTGTCTGCT+GGG 0.434483 6_4:+79210242 None:intergenic
TCCATGGATGGGTCTGAGAT+GGG 0.439417 6_4:-79215126 Msa0998350:CDS
GAAGATACATAAAACATCAT+AGG 0.440019 6_4:+79210041 None:intergenic
AACATTTACAACATGTTATG+TGG 0.441333 6_4:+79209859 None:intergenic
TTCCATGGATGGGTCTGAGA+TGG 0.446734 6_4:-79215127 Msa0998350:CDS
GGTTGTGTCTGCTGGGGTTG+AGG 0.447864 6_4:+79210249 None:intergenic
GAGATGGGGTTGTTTGAAGT+TGG 0.453490 6_4:-79215111 Msa0998350:CDS
TAGGGCGCAAAAGAATCATT+TGG 0.455099 6_4:-79210352 Msa0998350:CDS
GGTTAGGGTTTGGTGGTGAA+GGG 0.457604 6_4:-79215194 Msa0998350:CDS
AGGGGACGGGAGAGGGAGGT+TGG 0.458623 6_4:+79215314 None:intergenic
TTTGTGTTTGTGTTGGAACT+TGG 0.461107 6_4:+79215551 None:intergenic
GAACGAGAAGGCGGCATGCC+AGG 0.461441 6_4:+79210228 None:intergenic
TTATGAGTTTGTGTTTGTGT+TGG 0.462086 6_4:+79215544 None:intergenic
GAAAGAACTTCAACGCCTTA+GGG 0.472203 6_4:-79210370 Msa0998350:CDS
ATCGGGACAGCGTCAGGGGA+CGG 0.485265 6_4:+79215300 None:intergenic
AGACACCACCTTCCGTTTCG+CGG 0.485465 6_4:-79215385 Msa0998350:CDS
GGAAAAGGTTGAAGAGAGGA+AGG 0.492873 6_4:-79215172 Msa0998350:CDS
AAGTCAATTATAACTGGTGG+TGG 0.495733 6_4:+79215456 None:intergenic
GTCCCCTGACGCTGTCCCGA+TGG 0.496675 6_4:-79215298 Msa0998350:CDS
AGAGGAAGGTGAGTAGACAT+AGG 0.498750 6_4:-79215158 Msa0998350:CDS
ATCGAAGTCGGACGGGTCGA+AGG 0.500424 6_4:+79215341 None:intergenic
GAGAACATCCCGTTAAATGA+AGG 0.504928 6_4:+79210312 None:intergenic
GTGTTGGAACTTGGAAGTGG+TGG 0.505022 6_4:+79215560 None:intergenic
AGTGGTGGTGGTGGTTGAAG+TGG 0.505855 6_4:+79215575 None:intergenic
CGGTGGTGGGTCCCACGTGA+TGG 0.512907 6_4:+79215420 None:intergenic
AGAGCGACCACGACCGTTGA+AGG 0.516566 6_4:+79210197 None:intergenic
GATCAACCCTTCAACGGTCG+TGG 0.516911 6_4:-79210204 Msa0998350:CDS
CAACCCCAGCAGACACAACC+TGG 0.516981 6_4:-79210246 Msa0998350:CDS
CGTCGAAGTTTGCCGCGAAA+CGG 0.519451 6_4:+79215373 None:intergenic
AACTCGATATACAAGTGAGC+TGG 0.519563 6_4:-79213424 Msa0998350:CDS
ATGAGAATGGAACTTGACTT+TGG 0.521390 6_4:+79215689 None:intergenic
AACAAGTGTTGTAATGAGAA+TGG 0.521692 6_4:+79215676 None:intergenic
TGTCTGAGTGGGAACGGCGG+TGG 0.521835 6_4:+79215403 None:intergenic
GGGTTGTTTGAAGTTGGTGA+TGG 0.524705 6_4:-79215105 Msa0998350:CDS
TGGACTCATCAGAGTCCATC+GGG 0.530528 6_4:+79215283 None:intergenic
AGGTGGTGTCTGAGTGGGAA+CGG 0.531088 6_4:+79215397 None:intergenic
CATCGGGAAGTCAGCGTCAG+AGG 0.531841 6_4:-79215262 Msa0998350:CDS
AAGGGGAAAAGGTTGAAGAG+AGG 0.535836 6_4:-79215176 Msa0998350:CDS
AGGATTACTCATCTGTTGCA+TGG 0.537744 6_4:+79210269 None:intergenic
AGTTCAGCAAGTTTCTCAGC+CGG 0.541555 6_4:+79215066 None:intergenic
TTTGTGTTGGAACTTGGAAG+TGG 0.541724 6_4:+79215557 None:intergenic
AGGTATAGTAGTTCCATGGA+TGG 0.543947 6_4:-79215138 Msa0998350:CDS
TGGACTCTGATGAGTCCATC+GGG 0.544487 6_4:-79215278 Msa0998350:CDS
TGGTGGGTCCCACGTGATGG+TGG 0.546686 6_4:+79215423 None:intergenic
TGGAGATATCGAAGTCGGAC+GGG 0.546734 6_4:+79215334 None:intergenic
CGTCAGGGGACGGGAGAGGG+AGG 0.547402 6_4:+79215310 None:intergenic
AAGCTTTGCTTGTTGCTCGA+AGG 0.549248 6_4:+79210925 None:intergenic
CCCCATCTCAGACCCATCCA+TGG 0.549369 6_4:+79215125 None:intergenic
CGTTCTGATCAACCCTTCAA+CGG 0.556715 6_4:-79210210 Msa0998350:CDS
TCTAAGTCAATTATAACTGG+TGG 0.559887 6_4:+79215453 None:intergenic
AGTCCATCGGGACAGCGTCA+GGG 0.559909 6_4:+79215295 None:intergenic
GGAAGTCAGCGTCAGAGGGA+CGG 0.567008 6_4:-79215257 Msa0998350:CDS
CCATGGATGGGTCTGAGATG+GGG 0.569336 6_4:-79215125 Msa0998350:CDS
GAGCGACCACGACCGTTGAA+GGG 0.569915 6_4:+79210198 None:intergenic
ATATATACAACATGTTACTT+GGG 0.571912 6_4:+79210096 None:intergenic
ACATAGGTATAGTAGTTCCA+TGG 0.575020 6_4:-79215142 Msa0998350:CDS
AACTAGTTGATTATAGATGG+TGG 0.578755 6_4:-79209890 Msa0998350:three_prime_UTR
ATGGACTCTGATGAGTCCAT+CGG 0.585619 6_4:-79215279 Msa0998350:CDS
ACGGAAGGTGGTGTCTGAGT+GGG 0.588249 6_4:+79215392 None:intergenic
GCATCTCAGGAGTTTGTCTG+TGG 0.588489 6_4:-79215235 Msa0998350:CDS
ATGGACTCATCAGAGTCCAT+CGG 0.588783 6_4:+79215282 None:intergenic
GAAGTTTGCCGCGAAACGGA+AGG 0.589986 6_4:+79215377 None:intergenic
CTGCTGCACGATCGAAAGAG+AGG 0.598234 6_4:-79213449 Msa0998350:CDS
GATATACAAGTGAGCTGGAG+AGG 0.598508 6_4:-79213419 Msa0998350:CDS
CAACAAGCAAAGCTTAGAGA+AGG 0.603588 6_4:-79210917 Msa0998350:intron
TTGGAGATATCGAAGTCGGA+CGG 0.611978 6_4:+79215333 None:intergenic
GGTATAGTAGTTCCATGGAT+GGG 0.613894 6_4:-79215137 Msa0998350:CDS
AAATGAAGGATTACCGGCAA+CGG 0.623798 6_4:+79210326 None:intergenic
AACGGAAGGTGGTGTCTGAG+TGG 0.626499 6_4:+79215391 None:intergenic
GAAAACATGCCACCATCACG+TGG 0.629605 6_4:-79215432 Msa0998350:CDS
TGGTGTCTGAGTGGGAACGG+CGG 0.631875 6_4:+79215400 None:intergenic
GAGGTTGGAGATATCGAAGT+CGG 0.632312 6_4:+79215329 None:intergenic
TGGTGTGAAGAAATCTATGC+CGG 0.640871 6_4:-79215085 Msa0998350:CDS
AAGGGTTGATCAGAACGAGA+AGG 0.660536 6_4:+79210216 None:intergenic
GGTTGATCAGAACGAGAAGG+CGG 0.661757 6_4:+79210219 None:intergenic
ATGCCAGGTTGTGTCTGCTG+GGG 0.664418 6_4:+79210243 None:intergenic
GTTTGCCGCGAAACGGAAGG+TGG 0.671587 6_4:+79215380 None:intergenic
ATTCTGAGCAGTCAAATCAG+TGG 0.697438 6_4:+79210973 None:intergenic
GGACTGTAAGTTGTGCAGAG+AGG 0.716589 6_4:+79213364 None:intergenic
AAAACATGCCACCATCACGT+GGG 0.739972 6_4:-79215431 Msa0998350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTTAGTTTTTCTTA+TGG - chr6_4:79210092-79210111 Msa0998350:three_prime_UTR 10.0%
!! TTATTTATGTACTAAATTTA+AGG - chr6_4:79210658-79210677 Msa0998350:intron 10.0%
!! ATATAAGTTTAATGAATATG+TGG - chr6_4:79210736-79210755 Msa0998350:intron 15.0%
!! TATATGATAGAATATTATAG+CGG - chr6_4:79210764-79210783 Msa0998350:intron 15.0%
!! GTAAACGTATATATAATTTA+CGG + chr6_4:79211355-79211374 None:intergenic 15.0%
!!! TTATTTTGTAATGGATAATT+TGG - chr6_4:79211677-79211696 Msa0998350:intron 15.0%
!! GAAAAAAAAAATAGATGAAA+TGG - chr6_4:79212043-79212062 Msa0998350:intron 15.0%
!!! ACAAAATTTAGTTATTTTCT+TGG - chr6_4:79214049-79214068 Msa0998350:intron 15.0%
!!! TTTTCTAAGTCAATTATAAC+TGG + chr6_4:79210147-79210166 None:intergenic 20.0%
!! AAATTGTATGTGTTTATGAT+CGG - chr6_4:79210987-79211006 Msa0998350:intron 20.0%
!!! ATGTGTCTTTTATTTTGTAA+TGG - chr6_4:79211668-79211687 Msa0998350:intron 20.0%
!! AAAAAACATCTTAAAACAAC+GGG + chr6_4:79211731-79211750 None:intergenic 20.0%
!! GAAAAAACATCTTAAAACAA+CGG + chr6_4:79211732-79211751 None:intergenic 20.0%
!!! ATTTTGACCTATATTTCAAA+TGG - chr6_4:79211821-79211840 Msa0998350:intron 20.0%
!!! TGTGTGTTTTATTTTGTAAT+TGG - chr6_4:79211943-79211962 Msa0998350:intron 20.0%
!! ATACATACAAATGTATAGTT+TGG - chr6_4:79212505-79212524 Msa0998350:intron 20.0%
!! AAAGACTTAAAAGATTTGTA+TGG + chr6_4:79212937-79212956 None:intergenic 20.0%
!! TATTAAGTGTTCTATGAAAT+GGG - chr6_4:79212960-79212979 Msa0998350:intron 20.0%
!! CAGTTAAAATTTGATCAAAA+CGG + chr6_4:79212987-79213006 None:intergenic 20.0%
!! AAGATACTGTGATTAATTTA+TGG + chr6_4:79213664-79213683 None:intergenic 20.0%
!! AAATGTGCAAAAGAATAAAA+AGG - chr6_4:79214561-79214580 Msa0998350:intron 20.0%
!! TTCAATAAAGATGTGATAAA+GGG + chr6_4:79214753-79214772 None:intergenic 20.0%
!! ATTCAATAAAGATGTGATAA+AGG + chr6_4:79214754-79214773 None:intergenic 20.0%
!! TTATCACATCTTTATTGAAT+TGG - chr6_4:79214754-79214773 Msa0998350:intron 20.0%
!!! TTGTAGCATAGTTTTAAAAA+AGG + chr6_4:79214861-79214880 None:intergenic 20.0%
!! TTACCATTTAAATATGAACA+TGG - chr6_4:79215163-79215182 Msa0998350:CDS 20.0%
!!! ATATATACAACATGTTACTT+GGG + chr6_4:79215501-79215520 None:intergenic 20.0%
!! TATATATACAACATGTTACT+TGG + chr6_4:79215502-79215521 None:intergenic 20.0%
!! ACTGAAAAACAAATTTCAAA+GGG + chr6_4:79215646-79215665 None:intergenic 20.0%
!! AACTGAAAAACAAATTTCAA+AGG + chr6_4:79215647-79215666 None:intergenic 20.0%
!!! CACTTTTTGAAGTTTGTTTT+CGG - chr6_4:79210624-79210643 Msa0998350:intron 25.0%
! GTTAAGAAACATTGAGTATT+GGG - chr6_4:79210877-79210896 Msa0998350:intron 25.0%
!! CTTCTCTTAAAAGTTTTTCT+AGG + chr6_4:79211104-79211123 None:intergenic 25.0%
! TTAATAAACCATCGTAAGTA+GGG + chr6_4:79211502-79211521 None:intergenic 25.0%
! TTTAATAAACCATCGTAAGT+AGG + chr6_4:79211503-79211522 None:intergenic 25.0%
! ATCAAATTCACAAACACAAT+TGG + chr6_4:79211621-79211640 None:intergenic 25.0%
!!! TGTAGTTGATTCTAAGATTA+GGG - chr6_4:79211791-79211810 Msa0998350:intron 25.0%
!! GGATTAACCATTTGAAATAT+AGG + chr6_4:79211831-79211850 None:intergenic 25.0%
! TATTTCAAATGGTTAATCCT+AGG - chr6_4:79211832-79211851 Msa0998350:intron 25.0%
! AAAATAGATGAAATGGTCTT+TGG - chr6_4:79212050-79212069 Msa0998350:intron 25.0%
!! AAATATTGTTTGTGTTTTGC+AGG - chr6_4:79212103-79212122 Msa0998350:intron 25.0%
! ATCTACATCATTGTTAAAGA+TGG + chr6_4:79212363-79212382 None:intergenic 25.0%
! TTCAGTGTAATCATATGTAT+TGG + chr6_4:79212648-79212667 None:intergenic 25.0%
!! TCATATTCCTCTTTTATCAA+AGG - chr6_4:79212837-79212856 Msa0998350:intron 25.0%
!! CATATTCCTCTTTTATCAAA+GGG - chr6_4:79212838-79212857 Msa0998350:intron 25.0%
!! ATATTCCTCTTTTATCAAAG+GGG - chr6_4:79212839-79212858 Msa0998350:intron 25.0%
! CTATTAAGTGTTCTATGAAA+TGG - chr6_4:79212959-79212978 Msa0998350:intron 25.0%
! ATTAAGTGTTCTATGAAATG+GGG - chr6_4:79212961-79212980 Msa0998350:intron 25.0%
! ATGCAATCATAATCAAAATG+AGG + chr6_4:79213065-79213084 None:intergenic 25.0%
!! CTTTGAAAACATAGAAAGTA+GGG + chr6_4:79213148-79213167 None:intergenic 25.0%
!! ACTTTGAAAACATAGAAAGT+AGG + chr6_4:79213149-79213168 None:intergenic 25.0%
! TAAATCGTGTAAAATAGGAT+TGG + chr6_4:79213293-79213312 None:intergenic 25.0%
! ATAGCTAAATCGTGTAAAAT+AGG + chr6_4:79213298-79213317 None:intergenic 25.0%
!!! ATCTTTTAGTTAGGAAAACA+TGG + chr6_4:79213364-79213383 None:intergenic 25.0%
! CAGAAAAATCTTATACCATA+TGG + chr6_4:79213457-79213476 None:intergenic 25.0%
!!! TGGTTTTATTTTCGAAAACT+AGG + chr6_4:79213568-79213587 None:intergenic 25.0%
! AGTTGGTTGTTACATAAATT+TGG + chr6_4:79213588-79213607 None:intergenic 25.0%
! ATTAATCACAGTATCTTGTT+AGG - chr6_4:79213667-79213686 Msa0998350:intron 25.0%
!! CATTTTATATGCCAATTTTG+TGG - chr6_4:79213789-79213808 Msa0998350:intron 25.0%
! TCTCAGTAGTAAATACTTAA+GGG + chr6_4:79213967-79213986 None:intergenic 25.0%
! GAGAAATAAGTGAAATGATA+TGG - chr6_4:79213987-79214006 Msa0998350:intron 25.0%
! GAAATGATATGGTAAAGTTT+AGG - chr6_4:79213998-79214017 Msa0998350:intron 25.0%
! ATTCCATTTAGTTACTTCTA+TGG - chr6_4:79214134-79214153 Msa0998350:intron 25.0%
! ATTCCATAGAAGTAACTAAA+TGG + chr6_4:79214140-79214159 None:intergenic 25.0%
! AAAAATATCTGTCTTAAGGA+TGG + chr6_4:79214316-79214335 None:intergenic 25.0%
! ACTCAAAAATATCTGTCTTA+AGG + chr6_4:79214320-79214339 None:intergenic 25.0%
!!! ACAGATATTTTTGAGTAAAG+TGG - chr6_4:79214324-79214343 Msa0998350:intron 25.0%
! CATCTAAAAATCACATGAAA+AGG + chr6_4:79214421-79214440 None:intergenic 25.0%
!!! CTTTTCATGTGATTTTTAGA+TGG - chr6_4:79214419-79214438 Msa0998350:intron 25.0%
!! ATCATAGATATTTGATGACT+TGG + chr6_4:79214464-79214483 None:intergenic 25.0%
! TTTCTTGATCCATAAAAAAG+TGG - chr6_4:79214716-79214735 Msa0998350:intron 25.0%
!!! AAGCAAAATCCACTTTTTTA+TGG + chr6_4:79214728-79214747 None:intergenic 25.0%
! TCAATAAAGATGTGATAAAG+GGG + chr6_4:79214752-79214771 None:intergenic 25.0%
!! TATTGAATTGGACTAGAAAA+AGG - chr6_4:79214766-79214785 Msa0998350:intron 25.0%
! TAAAACTATGCTACAAAAGT+TGG - chr6_4:79214865-79214884 Msa0998350:intron 25.0%
!! TTTTGCATCATTTACGATTT+TGG - chr6_4:79214913-79214932 Msa0998350:intron 25.0%
!! TCGGATATTTTCAAAACTAA+GGG + chr6_4:79214940-79214959 None:intergenic 25.0%
!! ATCGGATATTTTCAAAACTA+AGG + chr6_4:79214941-79214960 None:intergenic 25.0%
!!! GTTGCTTTTGTGATATAAAT+CGG - chr6_4:79215046-79215065 Msa0998350:CDS 25.0%
! TTCAAGCAATGATATTTCTT+TGG + chr6_4:79215101-79215120 None:intergenic 25.0%
! TAGCCATGTTCATATTTAAA+TGG + chr6_4:79215169-79215188 None:intergenic 25.0%
! CAACATCAAAGTAAATGATT+TGG - chr6_4:79215458-79215477 Msa0998350:CDS 25.0%
! CATAAAACATCATAGGATTA+AGG + chr6_4:79215549-79215568 None:intergenic 25.0%
! GAAGATACATAAAACATCAT+AGG + chr6_4:79215556-79215575 None:intergenic 25.0%
! TATGTATCTTCTACTGTTTA+AGG - chr6_4:79215565-79215584 Msa0998350:five_prime_UTR 25.0%
!! TGCAGAAAGTACAAAATAAT+AGG + chr6_4:79215602-79215621 None:intergenic 25.0%
!!! AAATTTGTTTTTCAGTTCTC+TGG - chr6_4:79215650-79215669 Msa0998350:five_prime_UTR 25.0%
! AAGAACTAGTTGATTATAGA+TGG - chr6_4:79215701-79215720 Msa0998350:five_prime_UTR 25.0%
! AACATTTACAACATGTTATG+TGG + chr6_4:79215738-79215757 None:intergenic 25.0%
AAGACAATTTCCTCAACTTT+AGG - chr6_4:79209873-79209892 Msa0998350:three_prime_UTR 30.0%
!!! GTTTTGTTTACCTAAAGTTG+AGG + chr6_4:79209886-79209905 None:intergenic 30.0%
! AACAAGTGTTGTAATGAGAA+TGG + chr6_4:79209921-79209940 None:intergenic 30.0%
TTATGAGTTTGTGTTTGTGT+TGG + chr6_4:79210053-79210072 None:intergenic 30.0%
TCTAAGTCAATTATAACTGG+TGG + chr6_4:79210144-79210163 None:intergenic 30.0%
!!! TGGATTCAGAGTTTTTTGAT+GGG - chr6_4:79210379-79210398 Msa0998350:CDS 30.0%
!!! ATAAACCTTTTAGCTCTCTT+AGG + chr6_4:79210567-79210586 None:intergenic 30.0%
GGTTAAGAAACATTGAGTAT+TGG - chr6_4:79210876-79210895 Msa0998350:intron 30.0%
AGAGAGAAGATTATGTAGTT+AGG - chr6_4:79211030-79211049 Msa0998350:intron 30.0%
TGTCAAATTACTACAAGTAG+AGG - chr6_4:79211074-79211093 Msa0998350:intron 30.0%
! TTTACCTAATTTGTGAGTCA+TGG - chr6_4:79211370-79211389 Msa0998350:intron 30.0%
TTAACCATGACTCACAAATT+AGG + chr6_4:79211377-79211396 None:intergenic 30.0%
CGATTCTAAGTTTAGAAGTT+TGG - chr6_4:79211545-79211564 Msa0998350:intron 30.0%
! AAGTTTAGAAGTTTGGAATC+TGG - chr6_4:79211552-79211571 Msa0998350:intron 30.0%
GGAAGTTAATCCTATACATA+TGG - chr6_4:79211573-79211592 Msa0998350:intron 30.0%
TCCTATACATATGGAATTTC+TGG - chr6_4:79211582-79211601 Msa0998350:intron 30.0%
ACCAGAAATTCCATATGTAT+AGG + chr6_4:79211586-79211605 None:intergenic 30.0%
!! CTGTAGTTGATTCTAAGATT+AGG - chr6_4:79211790-79211809 Msa0998350:intron 30.0%
!! GTAGTTGATTCTAAGATTAG+GGG - chr6_4:79211792-79211811 Msa0998350:intron 30.0%
CTTCTATATATGTTGATCCT+AGG + chr6_4:79211852-79211871 None:intergenic 30.0%
ATGAAATGGTCTTTGGATTA+TGG - chr6_4:79212057-79212076 Msa0998350:intron 30.0%
AAAGGAAATAACATACCTGA+AGG + chr6_4:79212254-79212273 None:intergenic 30.0%
TTCAGAACAGTGAAATGAAA+AGG + chr6_4:79212272-79212291 None:intergenic 30.0%
TGTTTGTAACATGTTCTTGT+TGG - chr6_4:79212321-79212340 Msa0998350:intron 30.0%
ACATCATTGTTAAAGATGGA+GGG + chr6_4:79212359-79212378 None:intergenic 30.0%
TACATCATTGTTAAAGATGG+AGG + chr6_4:79212360-79212379 None:intergenic 30.0%
GGTTGTAACGCAAATTATAT+AGG + chr6_4:79212560-79212579 None:intergenic 30.0%
! GTAATCATATGTATTGGTGT+CGG + chr6_4:79212642-79212661 None:intergenic 30.0%
GAAAAGTTCAGATGATATGT+AGG + chr6_4:79212808-79212827 None:intergenic 30.0%
CTAAATCATGAAACAGAAGA+TGG + chr6_4:79213091-79213110 None:intergenic 30.0%
! TCCACAAAATTTTACGTAGA+TGG - chr6_4:79213222-79213241 Msa0998350:intron 30.0%
! ACCATCTACGTAAAATTTTG+TGG + chr6_4:79213226-79213245 None:intergenic 30.0%
!! AATAGGATTGGTTGAACTTT+AGG + chr6_4:79213281-79213300 None:intergenic 30.0%
CAATCATGCTTACGAAAAAT+TGG - chr6_4:79213319-79213338 Msa0998350:intron 30.0%
AATCTTATACCATATGGTGA+AGG + chr6_4:79213451-79213470 None:intergenic 30.0%
CCTACTTCAACGATATAAAA+TGG + chr6_4:79213483-79213502 None:intergenic 30.0%
! CCATTTTATATCGTTGAAGT+AGG - chr6_4:79213480-79213499 Msa0998350:intron 30.0%
TTTATATCGTTGAAGTAGGT+TGG - chr6_4:79213484-79213503 Msa0998350:intron 30.0%
!!! GAAGTAGGTTGGTTTATTTT+TGG - chr6_4:79213495-79213514 Msa0998350:intron 30.0%
! TTTTTGGATCCTTAATCTTG+TGG - chr6_4:79213511-79213530 Msa0998350:intron 30.0%
! GTACAAATGCAAGATTTTAC+TGG - chr6_4:79213718-79213737 Msa0998350:intron 30.0%
TCTACTAAAGTGACGATAAA+AGG + chr6_4:79213873-79213892 None:intergenic 30.0%
CTCTCAGTAGTAAATACTTA+AGG + chr6_4:79213968-79213987 None:intergenic 30.0%
GGTAAAGTTTAGGCTATTAT+AGG - chr6_4:79214008-79214027 Msa0998350:intron 30.0%
!!! CCTTTTTAGTTCTCGTTTTA+AGG + chr6_4:79214087-79214106 None:intergenic 30.0%
CCTTAAAACGAGAACTAAAA+AGG - chr6_4:79214084-79214103 Msa0998350:intron 30.0%
GTTACTTCTATGGAATACAT+TGG - chr6_4:79214144-79214163 Msa0998350:intron 30.0%
TCACTAGTCAGAAAACTAAA+AGG + chr6_4:79214181-79214200 None:intergenic 30.0%
!! CATGTGATTTTTAGATGGAT+AGG - chr6_4:79214424-79214443 Msa0998350:intron 30.0%
CAATAAAGATGTGATAAAGG+GGG + chr6_4:79214751-79214770 None:intergenic 30.0%
!! AGTTGGCTTAAATACAGTTT+TGG - chr6_4:79214882-79214901 Msa0998350:intron 30.0%
TACGTTAGATAGGGAAAAAT+CGG + chr6_4:79214959-79214978 None:intergenic 30.0%
TTTCCCTATCTAACGTATTT+AGG - chr6_4:79214962-79214981 Msa0998350:intron 30.0%
TTCCCTATCTAACGTATTTA+GGG - chr6_4:79214963-79214982 Msa0998350:intron 30.0%
ATCCCTAAATACGTTAGATA+GGG + chr6_4:79214968-79214987 None:intergenic 30.0%
!!! GCAAAAGTGTTTTGCAAAAA+TGG + chr6_4:79215130-79215149 None:intergenic 30.0%
! TGTTGTATACGATCTACTTT+TGG + chr6_4:79215443-79215462 None:intergenic 30.0%
!! TGTACTTTCTGCAGTTTTAT+AGG - chr6_4:79215609-79215628 Msa0998350:intron 30.0%
AACTAGTTGATTATAGATGG+TGG - chr6_4:79215704-79215723 Msa0998350:five_prime_UTR 30.0%
! TTGATTATAGATGGTGGTTA+TGG - chr6_4:79215710-79215729 Msa0998350:five_prime_UTR 30.0%
ATGAGAATGGAACTTGACTT+TGG + chr6_4:79209908-79209927 None:intergenic 35.0%
TTTGTGTTTGTGTTGGAACT+TGG + chr6_4:79210046-79210065 None:intergenic 35.0%
! GGTTTTCTTGTGAAGTTGTT+TGG + chr6_4:79210120-79210139 None:intergenic 35.0%
AAGTCAATTATAACTGGTGG+TGG + chr6_4:79210141-79210160 None:intergenic 35.0%
!!! GTGGATTCAGAGTTTTTTGA+TGG - chr6_4:79210378-79210397 Msa0998350:CDS 35.0%
!!! TCAGAGTTTTTTGATGGGTT+AGG - chr6_4:79210384-79210403 Msa0998350:CDS 35.0%
!!! CAGAGTTTTTTGATGGGTTA+GGG - chr6_4:79210385-79210404 Msa0998350:CDS 35.0%
!!! TTTTTTGATGGGTTAGGGTT+TGG - chr6_4:79210390-79210409 Msa0998350:CDS 35.0%
ACATAGGTATAGTAGTTCCA+TGG - chr6_4:79210452-79210471 Msa0998350:intron 35.0%
TTGATCCTAAGAGAGCTAAA+AGG - chr6_4:79210559-79210578 Msa0998350:intron 35.0%
TGAGATAGTAGGATAAGACT+TGG - chr6_4:79210809-79210828 Msa0998350:intron 35.0%
! GTGACTTAATTTGACTCAGT+TGG - chr6_4:79210855-79210874 Msa0998350:intron 35.0%
!! AAGAAACATTGAGTATTGGG+TGG - chr6_4:79210880-79210899 Msa0998350:intron 35.0%
!! AGAAACATTGAGTATTGGGT+GGG - chr6_4:79210881-79210900 Msa0998350:intron 35.0%
TAAAGAAACCATCGCGAATA+GGG + chr6_4:79210964-79210983 None:intergenic 35.0%
TTAAAGAAACCATCGCGAAT+AGG + chr6_4:79210965-79210984 None:intergenic 35.0%
! TATGTGTTTATGATCGGCTT+AGG - chr6_4:79210993-79211012 Msa0998350:intron 35.0%
! ATGTGTTTATGATCGGCTTA+GGG - chr6_4:79210994-79211013 Msa0998350:intron 35.0%
AGTTAGGAGAGTAAATCAGA+TGG - chr6_4:79211046-79211065 Msa0998350:intron 35.0%
AGTCTCTAACTGAAGTTTGT+CGG - chr6_4:79211308-79211327 Msa0998350:intron 35.0%
ATTTGTGAGTCATGGTTAAG+CGG - chr6_4:79211378-79211397 Msa0998350:intron 35.0%
AGTCTCGTACTAAAGTTTCT+TGG - chr6_4:79211445-79211464 Msa0998350:intron 35.0%
GTCTCGTACTAAAGTTTCTT+GGG - chr6_4:79211446-79211465 Msa0998350:intron 35.0%
ATCAGACACACAAACACAAT+TGG + chr6_4:79211894-79211913 None:intergenic 35.0%
GGATTATGGAGAATTCAGTT+TGG - chr6_4:79212071-79212090 Msa0998350:intron 35.0%
TTGTAACATGTTCTTGTTGG+TGG - chr6_4:79212324-79212343 Msa0998350:intron 35.0%
!! ATGTTCTTGTTGGTGGTTTA+TGG - chr6_4:79212331-79212350 Msa0998350:intron 35.0%
GCATATCCTTGGTATTATGT+GGG + chr6_4:79212433-79212452 None:intergenic 35.0%
TGCATATCCTTGGTATTATG+TGG + chr6_4:79212434-79212453 None:intergenic 35.0%
CTGTACTCATAACTTTGAAC+TGG - chr6_4:79212774-79212793 Msa0998350:intron 35.0%
AAACACCCCTTTGATAAAAG+AGG + chr6_4:79212847-79212866 None:intergenic 35.0%
TTAAGCAGTCTCAGGTTTAA+TGG + chr6_4:79213024-79213043 None:intergenic 35.0%
TGGAAATACAAGCACGAAAT+CGG + chr6_4:79213206-79213225 None:intergenic 35.0%
! AATTTTACGTAGATGGTCCT+AGG - chr6_4:79213229-79213248 Msa0998350:intron 35.0%
! AAAAACCCTCCTTTTTATCC+TGG + chr6_4:79213255-79213274 None:intergenic 35.0%
AAAGGATTGCCACAAGATTA+AGG + chr6_4:79213523-79213542 None:intergenic 35.0%
TATGTAACAACCAACTGTAG+TGG - chr6_4:79213592-79213611 Msa0998350:intron 35.0%
TGTTAGGATTTATGTTCGTC+TGG - chr6_4:79213683-79213702 Msa0998350:intron 35.0%
CATACTCTAAGTGTGTTTGA+GGG - chr6_4:79213743-79213762 Msa0998350:intron 35.0%
TCATCACAACACCACAAAAT+TGG + chr6_4:79213803-79213822 None:intergenic 35.0%
TTCTTTGAGTGTACTATCTC+TGG - chr6_4:79213838-79213857 Msa0998350:intron 35.0%
ACTAAAAAGGTGAGAAACGT+CGG - chr6_4:79214097-79214116 Msa0998350:intron 35.0%
TGACTAGTGACTATGTTAGA+GGG - chr6_4:79214191-79214210 Msa0998350:intron 35.0%
GAGTAAAGTGGTAATTATCC+AGG - chr6_4:79214336-79214355 Msa0998350:intron 35.0%
TCTGTAATCCAACAAACCAA+GGG + chr6_4:79214380-79214399 None:intergenic 35.0%
ATCTGTAATCCAACAAACCA+AGG + chr6_4:79214381-79214400 None:intergenic 35.0%
!! GTGATTTTTAGATGGATAGG+TGG - chr6_4:79214427-79214446 Msa0998350:intron 35.0%
! AGATATTTGATGACTTGGAG+TGG + chr6_4:79214459-79214478 None:intergenic 35.0%
TGATTTGACTGCTCAGAATA+AGG - chr6_4:79214625-79214644 Msa0998350:intron 35.0%
CGTAAATGATGCAAAATAGC+AGG + chr6_4:79214909-79214928 None:intergenic 35.0%
CATCCCTAAATACGTTAGAT+AGG + chr6_4:79214969-79214988 None:intergenic 35.0%
AAAGTGTGACATTGTCTAAG+TGG + chr6_4:79215019-79215038 None:intergenic 35.0%
!! TTTGTTTTTCAGTTCTCTGG+TGG - chr6_4:79215653-79215672 Msa0998350:five_prime_UTR 35.0%
! AGAGAAGAGAGAGAGTTTTC+AGG + chr6_4:79209971-79209990 None:intergenic 40.0%
TTTGTGTTGGAACTTGGAAG+TGG + chr6_4:79210040-79210059 None:intergenic 40.0%
AGGTATAGTAGTTCCATGGA+TGG - chr6_4:79210456-79210475 Msa0998350:intron 40.0%
GGTATAGTAGTTCCATGGAT+GGG - chr6_4:79210457-79210476 Msa0998350:intron 40.0%
TGGTGTGAAGAAATCTATGC+CGG - chr6_4:79210509-79210528 Msa0998350:intron 40.0%
!! GAAACATTGAGTATTGGGTG+GGG - chr6_4:79210882-79210901 Msa0998350:intron 40.0%
!! AAACATTGAGTATTGGGTGG+GGG - chr6_4:79210883-79210902 Msa0998350:intron 40.0%
TAGGAGAGTAAATCAGATGG+AGG - chr6_4:79211049-79211068 Msa0998350:intron 40.0%
AGGAGAGTAAATCAGATGGA+GGG - chr6_4:79211050-79211069 Msa0998350:intron 40.0%
ATGTAGTTTACCCCACTTAG+TGG - chr6_4:79211175-79211194 Msa0998350:intron 40.0%
TGTAGTTTACCCCACTTAGT+GGG - chr6_4:79211176-79211195 Msa0998350:intron 40.0%
AACTGTAATCCCACTAAGTG+GGG + chr6_4:79211188-79211207 None:intergenic 40.0%
CAACTGTAATCCCACTAAGT+GGG + chr6_4:79211189-79211208 None:intergenic 40.0%
TCAACTGTAATCCCACTAAG+TGG + chr6_4:79211190-79211209 None:intergenic 40.0%
GTCTCTAACTGAAGTTTGTC+GGG - chr6_4:79211309-79211328 Msa0998350:intron 40.0%
AAGTTTGTCGGGATATTCTG+AGG - chr6_4:79211320-79211339 Msa0998350:intron 40.0%
! TTAAGCGGTGTTGAGTTTGT+GGG - chr6_4:79211393-79211412 Msa0998350:intron 40.0%
GTCAAATACCCTACTTACGA+TGG - chr6_4:79211491-79211510 Msa0998350:intron 40.0%
AACTCGATATACAAGTGAGC+TGG - chr6_4:79212170-79212189 Msa0998350:intron 40.0%
!!! CTGTCTGATTTTGAGTTGTG+CGG - chr6_4:79212389-79212408 Msa0998350:intron 40.0%
TGTGCGGTCATAACTGTTTA+TGG - chr6_4:79212405-79212424 Msa0998350:intron 40.0%
ATGGAACCCACATAATACCA+AGG - chr6_4:79212424-79212443 Msa0998350:intron 40.0%
ACATGCAACATGCATATCCT+TGG + chr6_4:79212444-79212463 None:intergenic 40.0%
TATGCATGTTGCATGTGTGT+AGG - chr6_4:79212448-79212467 Msa0998350:intron 40.0%
AGTACAGTGTCCAAATGCAA+GGG + chr6_4:79212761-79212780 None:intergenic 40.0%
GTTTCAGATTAAGCAGTCTC+AGG + chr6_4:79213032-79213051 None:intergenic 40.0%
!! CTGCAGCACATCTTTTAGTT+AGG + chr6_4:79213373-79213392 None:intergenic 40.0%
TAAATCGAGCCTTCACCATA+TGG - chr6_4:79213439-79213458 Msa0998350:CDS 40.0%
GCATACTCTAAGTGTGTTTG+AGG - chr6_4:79213742-79213761 Msa0998350:intron 40.0%
AAGTGTGTTTGAGGGAATCT+TGG - chr6_4:79213751-79213770 Msa0998350:intron 40.0%
CTGACTAGTGACTATGTTAG+AGG - chr6_4:79214190-79214209 Msa0998350:intron 40.0%
AGGGCTTTCTTCCATAATAC+TGG - chr6_4:79214210-79214229 Msa0998350:intron 40.0%
GGGCTTTCTTCCATAATACT+GGG - chr6_4:79214211-79214230 Msa0998350:intron 40.0%
TCCATAATACTGGGAGAGAT+TGG - chr6_4:79214220-79214239 Msa0998350:intron 40.0%
CTGTAATCCAACAAACCAAG+GGG + chr6_4:79214379-79214398 None:intergenic 40.0%
! TTTGATGACTTGGAGTGGTT+GGG + chr6_4:79214454-79214473 None:intergenic 40.0%
! ATTTGATGACTTGGAGTGGT+TGG + chr6_4:79214455-79214474 None:intergenic 40.0%
ATTCTGAGCAGTCAAATCAG+TGG + chr6_4:79214624-79214643 None:intergenic 40.0%
CAACAAGCAAAGCTTAGAGA+AGG - chr6_4:79214677-79214696 Msa0998350:intron 40.0%
AGAAAGAACTTCAACGCCTT+AGG - chr6_4:79215223-79215242 Msa0998350:CDS 40.0%
GAAAGAACTTCAACGCCTTA+GGG - chr6_4:79215224-79215243 Msa0998350:CDS 40.0%
! AATGATTCTTTTGCGCCCTA+AGG + chr6_4:79215242-79215261 None:intergenic 40.0%
TAGGGCGCAAAAGAATCATT+TGG - chr6_4:79215242-79215261 Msa0998350:CDS 40.0%
AAATGAAGGATTACCGGCAA+CGG + chr6_4:79215271-79215290 None:intergenic 40.0%
GCCGGTAATCCTTCATTTAA+CGG - chr6_4:79215273-79215292 Msa0998350:CDS 40.0%
CCCGTTAAATGAAGGATTAC+CGG + chr6_4:79215277-79215296 None:intergenic 40.0%
CCGGTAATCCTTCATTTAAC+GGG - chr6_4:79215274-79215293 Msa0998350:CDS 40.0%
GAGAACATCCCGTTAAATGA+AGG + chr6_4:79215285-79215304 None:intergenic 40.0%
AGGATTACTCATCTGTTGCA+TGG + chr6_4:79215328-79215347 None:intergenic 40.0%
!! GAAGAGAGAGAGTTTTCAGG+TGG + chr6_4:79209968-79209987 None:intergenic 45.0%
AAAACATGCCACCATCACGT+GGG - chr6_4:79210163-79210182 Msa0998350:exon 45.0%
TTGGAGATATCGAAGTCGGA+CGG + chr6_4:79210264-79210283 None:intergenic 45.0%
GAGGTTGGAGATATCGAAGT+CGG + chr6_4:79210268-79210287 None:intergenic 45.0%
ATGGACTCATCAGAGTCCAT+CGG + chr6_4:79210315-79210334 None:intergenic 45.0%
ATGGACTCTGATGAGTCCAT+CGG - chr6_4:79210315-79210334 Msa0998350:CDS 45.0%
!! TTTGATGGGTTAGGGTTTGG+TGG - chr6_4:79210393-79210412 Msa0998350:intron 45.0%
AAGGGGAAAAGGTTGAAGAG+AGG - chr6_4:79210418-79210437 Msa0998350:intron 45.0%
GGAAAAGGTTGAAGAGAGGA+AGG - chr6_4:79210422-79210441 Msa0998350:intron 45.0%
AGAGGAAGGTGAGTAGACAT+AGG - chr6_4:79210436-79210455 Msa0998350:intron 45.0%
! GAGATGGGGTTGTTTGAAGT+TGG - chr6_4:79210483-79210502 Msa0998350:intron 45.0%
!! GGGTTGTTTGAAGTTGGTGA+TGG - chr6_4:79210489-79210508 Msa0998350:intron 45.0%
AGTTCAGCAAGTTTCTCAGC+CGG + chr6_4:79210531-79210550 None:intergenic 45.0%
ACTATCTCACGTCAGCTACA+TGG + chr6_4:79210798-79210817 None:intergenic 45.0%
TGTAGCTGACGTGAGATAGT+AGG - chr6_4:79210798-79210817 Msa0998350:intron 45.0%
!! AACATTGAGTATTGGGTGGG+GGG - chr6_4:79210884-79210903 Msa0998350:intron 45.0%
! TATGATCGGCTTAGGGAGTT+TGG - chr6_4:79211001-79211020 Msa0998350:intron 45.0%
! ATGATCGGCTTAGGGAGTTT+GGG - chr6_4:79211002-79211021 Msa0998350:intron 45.0%
TGTAGCCAATCTCTGTGACT+CGG - chr6_4:79211222-79211241 Msa0998350:intron 45.0%
GTTAAGCGACACTCAGTTTG+TGG - chr6_4:79211248-79211267 Msa0998350:intron 45.0%
! GTTAAGCGGTGTTGAGTTTG+TGG - chr6_4:79211392-79211411 Msa0998350:intron 45.0%
GGATACTATGACGAGCATCT+GGG - chr6_4:79211467-79211486 Msa0998350:intron 45.0%
GATATACAAGTGAGCTGGAG+AGG - chr6_4:79212175-79212194 Msa0998350:intron 45.0%
TGCACAACTTACAGTCCTTC+AGG - chr6_4:79212236-79212255 Msa0998350:intron 45.0%
GTTGCATGTGTGTAGGTACT+AGG - chr6_4:79212455-79212474 Msa0998350:intron 45.0%
CATGTGTGTAGGTACTAGGT+AGG - chr6_4:79212459-79212478 Msa0998350:intron 45.0%
GCGTTACAACCTATGAAGCA+CGG - chr6_4:79212569-79212588 Msa0998350:intron 45.0%
AACGACACATGTTCGACAAC+AGG + chr6_4:79212617-79212636 None:intergenic 45.0%
AACCTATGAAGCACAGACAC+AGG + chr6_4:79212727-79212746 None:intergenic 45.0%
GAGTACAGTGTCCAAATGCA+AGG + chr6_4:79212762-79212781 None:intergenic 45.0%
CTAGGCCAGGATAAAAAGGA+GGG - chr6_4:79213247-79213266 Msa0998350:intron 45.0%
TCTTGTGGCAATCCTTTCCA+AGG - chr6_4:79213526-79213545 Msa0998350:intron 45.0%
! CATGTTTCTGCACCTTGGAA+AGG + chr6_4:79213541-79213560 None:intergenic 45.0%
! GGTGTTGTGATGAGTGAAGA+TGG - chr6_4:79213810-79213829 Msa0998350:intron 45.0%
GTGTACTATCTCTGGTGATC+TGG - chr6_4:79213846-79213865 Msa0998350:intron 45.0%
GCCAATCTCTCCCAGTATTA+TGG + chr6_4:79214224-79214243 None:intergenic 45.0%
TGAAATTAACAGCGTGCGAG+AGG + chr6_4:79214524-79214543 None:intergenic 45.0%
! AAGCTTTGCTTGTTGCTCGA+AGG + chr6_4:79214672-79214691 None:intergenic 45.0%
! AAGGGTTGATCAGAACGAGA+AGG + chr6_4:79215381-79215400 None:intergenic 45.0%
CGTTCTGATCAACCCTTCAA+CGG - chr6_4:79215384-79215403 Msa0998350:CDS 45.0%
!!! AGAGAGAGTTTTCAGGTGGC+TGG + chr6_4:79209964-79209983 None:intergenic 50.0%
TTGGAACTTGGAAGTGGTGG+TGG + chr6_4:79210034-79210053 None:intergenic 50.0%
GTGTTGGAACTTGGAAGTGG+TGG + chr6_4:79210037-79210056 None:intergenic 50.0%
GAAAACATGCCACCATCACG+TGG - chr6_4:79210162-79210181 Msa0998350:exon 50.0%
TGGAGATATCGAAGTCGGAC+GGG + chr6_4:79210263-79210282 None:intergenic 50.0%
TGGACTCATCAGAGTCCATC+GGG + chr6_4:79210314-79210333 None:intergenic 50.0%
TGGACTCTGATGAGTCCATC+GGG - chr6_4:79210316-79210335 Msa0998350:CDS 50.0%
GCATCTCAGGAGTTTGTCTG+TGG - chr6_4:79210359-79210378 Msa0998350:CDS 50.0%
!! GGTTAGGGTTTGGTGGTGAA+GGG - chr6_4:79210400-79210419 Msa0998350:intron 50.0%
!! GTTAGGGTTTGGTGGTGAAG+GGG - chr6_4:79210401-79210420 Msa0998350:intron 50.0%
!! GTTTGGTGGTGAAGGGGAAA+AGG - chr6_4:79210407-79210426 Msa0998350:intron 50.0%
TTCCATGGATGGGTCTGAGA+TGG - chr6_4:79210467-79210486 Msa0998350:intron 50.0%
! TCCATGGATGGGTCTGAGAT+GGG - chr6_4:79210468-79210487 Msa0998350:intron 50.0%
ACCATCGCGAATAGGGTCTT+TGG + chr6_4:79210957-79210976 None:intergenic 50.0%
ACCAACCGAGTCACAGAGAT+TGG + chr6_4:79211230-79211249 None:intergenic 50.0%
AAGCGACACTCAGTTTGTGG+TGG - chr6_4:79211251-79211270 Msa0998350:intron 50.0%
AGCGACACTCAGTTTGTGGT+GGG - chr6_4:79211252-79211271 Msa0998350:intron 50.0%
TTGAGTTTGTGGGAGGACTG+AGG - chr6_4:79211403-79211422 Msa0998350:intron 50.0%
GGGATACTATGACGAGCATC+TGG - chr6_4:79211466-79211485 Msa0998350:intron 50.0%
GGACTGTAAGTTGTGCAGAG+AGG + chr6_4:79212233-79212252 None:intergenic 50.0%
GTCCTGTGTCTGTGCTTCAT+AGG - chr6_4:79212722-79212741 Msa0998350:intron 50.0%
CTACACGCTTCCCTTGCATT+TGG - chr6_4:79212748-79212767 Msa0998350:intron 50.0%
GGTCCTAGGCCAGGATAAAA+AGG - chr6_4:79213243-79213262 Msa0998350:intron 50.0%
! CCTCCTTTTTATCCTGGCCT+AGG + chr6_4:79213249-79213268 None:intergenic 50.0%
CCTAGGCCAGGATAAAAAGG+AGG - chr6_4:79213246-79213265 Msa0998350:intron 50.0%
! GCACTCATGTTTCTGCACCT+TGG + chr6_4:79213546-79213565 None:intergenic 50.0%
ATCCAGGCATTCAACCCACA+TGG - chr6_4:79214352-79214371 Msa0998350:intron 50.0%
ACAAACCAAGGGGACCATGT+GGG + chr6_4:79214369-79214388 None:intergenic 50.0%
AACAAACCAAGGGGACCATG+TGG + chr6_4:79214370-79214389 None:intergenic 50.0%
!! ACATGGTCCCCTTGGTTTGT+TGG - chr6_4:79214369-79214388 Msa0998350:intron 50.0%
AATCATTTGGCTGCCGTTGC+CGG - chr6_4:79215255-79215274 Msa0998350:CDS 50.0%
GGTTGATCAGAACGAGAAGG+CGG + chr6_4:79215378-79215397 None:intergenic 50.0%
TCGTGGTCGCTCTAACTTCA+TGG - chr6_4:79215407-79215426 Msa0998350:CDS 50.0%
!! AGTGGTGGTGGTGGTTGAAG+TGG + chr6_4:79210022-79210041 None:intergenic 55.0%
!! GAACTTGGAAGTGGTGGTGG+TGG + chr6_4:79210031-79210050 None:intergenic 55.0%
AGGTGGTGTCTGAGTGGGAA+CGG + chr6_4:79210200-79210219 None:intergenic 55.0%
ACGGAAGGTGGTGTCTGAGT+GGG + chr6_4:79210205-79210224 None:intergenic 55.0%
AACGGAAGGTGGTGTCTGAG+TGG + chr6_4:79210206-79210225 None:intergenic 55.0%
AGACACCACCTTCCGTTTCG+CGG - chr6_4:79210209-79210228 Msa0998350:CDS 55.0%
GAAGTTTGCCGCGAAACGGA+AGG + chr6_4:79210220-79210239 None:intergenic 55.0%
CGTCGAAGTTTGCCGCGAAA+CGG + chr6_4:79210224-79210243 None:intergenic 55.0%
ATCGGGAAGTCAGCGTCAGA+GGG - chr6_4:79210333-79210352 Msa0998350:CDS 55.0%
!! GGGTTAGGGTTTGGTGGTGA+AGG - chr6_4:79210399-79210418 Msa0998350:intron 55.0%
! CCATGGATGGGTCTGAGATG+GGG - chr6_4:79210469-79210488 Msa0998350:intron 55.0%
!! ATTGAGTATTGGGTGGGGGG+AGG - chr6_4:79210887-79210906 Msa0998350:intron 55.0%
!! TTGAGTATTGGGTGGGGGGA+GGG - chr6_4:79210888-79210907 Msa0998350:intron 55.0%
!! GGTTTGTTGGGGGTGCTCTA+AGG - chr6_4:79210919-79210938 Msa0998350:CDS 55.0%
GCCAAAGACCCTATTCGCGA+TGG - chr6_4:79210953-79210972 Msa0998350:CDS 55.0%
!! GCCAATCTCTGTGACTCGGT+TGG - chr6_4:79211226-79211245 Msa0998350:intron 55.0%
GCGACACTCAGTTTGTGGTG+GGG - chr6_4:79211253-79211272 Msa0998350:intron 55.0%
CGACACTCAGTTTGTGGTGG+GGG - chr6_4:79211254-79211273 Msa0998350:intron 55.0%
! AGCGGTGTTGAGTTTGTGGG+AGG - chr6_4:79211396-79211415 Msa0998350:intron 55.0%
CTGCTGCACGATCGAAAGAG+AGG - chr6_4:79212145-79212164 Msa0998350:intron 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG + chr6_4:79212581-79212600 None:intergenic 55.0%
ATGAAGCACGGACACTCCTC+AGG - chr6_4:79212581-79212600 Msa0998350:intron 55.0%
AACAGGACACGCCTAACCTG+AGG + chr6_4:79212600-79212619 None:intergenic 55.0%
TACGTAGATGGTCCTAGGCC+AGG - chr6_4:79213234-79213253 Msa0998350:intron 55.0%
CCAGTAGCGTCCACTACAGT+TGG + chr6_4:79213605-79213624 None:intergenic 55.0%
!! CCAACTGTAGTGGACGCTAC+TGG - chr6_4:79213602-79213621 Msa0998350:intron 55.0%
! GACCATGTGGGTTGAATGCC+TGG + chr6_4:79214357-79214376 None:intergenic 55.0%
TTCAACCCACATGGTCCCCT+TGG - chr6_4:79214361-79214380 Msa0998350:intron 55.0%
ATGCCAGGTTGTGTCTGCTG+GGG + chr6_4:79215354-79215373 None:intergenic 55.0%
CATGCCAGGTTGTGTCTGCT+GGG + chr6_4:79215355-79215374 None:intergenic 55.0%
GATCAACCCTTCAACGGTCG+TGG - chr6_4:79215390-79215409 Msa0998350:CDS 55.0%
TGGTGTCTGAGTGGGAACGG+CGG + chr6_4:79210197-79210216 None:intergenic 60.0%
GTTTGCCGCGAAACGGAAGG+TGG + chr6_4:79210217-79210236 None:intergenic 60.0%
ATCGAAGTCGGACGGGTCGA+AGG + chr6_4:79210256-79210275 None:intergenic 60.0%
AGTCCATCGGGACAGCGTCA+GGG + chr6_4:79210302-79210321 None:intergenic 60.0%
!! CTCTGACGCTGACTTCCCGA+TGG + chr6_4:79210334-79210353 None:intergenic 60.0%
CATCGGGAAGTCAGCGTCAG+AGG - chr6_4:79210332-79210351 Msa0998350:CDS 60.0%
GGAAGTCAGCGTCAGAGGGA+CGG - chr6_4:79210337-79210356 Msa0998350:CDS 60.0%
CCCCATCTCAGACCCATCCA+TGG + chr6_4:79210472-79210491 None:intergenic 60.0%
!! TGAGTATTGGGTGGGGGGAG+GGG - chr6_4:79210889-79210908 Msa0998350:intron 60.0%
!! AGGGGGCGCTGAGGTTTGTT+GGG - chr6_4:79210907-79210926 Msa0998350:intron 60.0%
! CACTCAGTTTGTGGTGGGGG+AGG - chr6_4:79211257-79211276 Msa0998350:intron 60.0%
! TTTGTGGTGGGGGAGGACTG+AGG - chr6_4:79211264-79211283 Msa0998350:intron 60.0%
GCACGGACACTCCTCAGGTT+AGG - chr6_4:79212586-79212605 Msa0998350:intron 60.0%
GGTTGTGTCTGCTGGGGTTG+AGG + chr6_4:79215348-79215367 None:intergenic 60.0%
CAACCCCAGCAGACACAACC+TGG - chr6_4:79215348-79215367 Msa0998350:CDS 60.0%
GCATGCCAGGTTGTGTCTGC+TGG + chr6_4:79215356-79215375 None:intergenic 60.0%
GAGCGACCACGACCGTTGAA+GGG + chr6_4:79215399-79215418 None:intergenic 60.0%
AGAGCGACCACGACCGTTGA+AGG + chr6_4:79215400-79215419 None:intergenic 60.0%
! TGGTGGGTCCCACGTGATGG+TGG + chr6_4:79210174-79210193 None:intergenic 65.0%
TGAGTGGGAACGGCGGTGGT+GGG + chr6_4:79210190-79210209 None:intergenic 65.0%
TGTCTGAGTGGGAACGGCGG+TGG + chr6_4:79210194-79210213 None:intergenic 65.0%
ATCGGGACAGCGTCAGGGGA+CGG + chr6_4:79210297-79210316 None:intergenic 65.0%
GTCCATCGGGACAGCGTCAG+GGG + chr6_4:79210301-79210320 None:intergenic 65.0%
GAGTCCATCGGGACAGCGTC+AGG + chr6_4:79210303-79210322 None:intergenic 65.0%
CGTCAGAGGGACGGCATCTC+AGG - chr6_4:79210346-79210365 Msa0998350:CDS 65.0%
!! GAGTATTGGGTGGGGGGAGG+GGG - chr6_4:79210890-79210909 Msa0998350:intron 65.0%
!! GAGGGGGCGCTGAGGTTTGT+TGG - chr6_4:79210906-79210925 Msa0998350:intron 65.0%
!! GGGGGCGCTGAGGTTTGTTG+GGG - chr6_4:79210908-79210927 Msa0998350:intron 65.0%
!! GGGGCGCTGAGGTTTGTTGG+GGG - chr6_4:79210909-79210928 Msa0998350:intron 65.0%
!! GGGGTGCTCTAAGGCGTGTC+TGG - chr6_4:79210928-79210947 Msa0998350:CDS 65.0%
GAACGAGAAGGCGGCATGCC+AGG + chr6_4:79215369-79215388 None:intergenic 65.0%
!! CGGTGGTGGGTCCCACGTGA+TGG + chr6_4:79210177-79210196 None:intergenic 70.0%
CTGAGTGGGAACGGCGGTGG+TGG + chr6_4:79210191-79210210 None:intergenic 70.0%
AGGGGACGGGAGAGGGAGGT+TGG + chr6_4:79210283-79210302 None:intergenic 70.0%
CAGCGTCAGGGGACGGGAGA+GGG + chr6_4:79210290-79210309 None:intergenic 70.0%
ACAGCGTCAGGGGACGGGAG+AGG + chr6_4:79210291-79210310 None:intergenic 70.0%
TCGGGACAGCGTCAGGGGAC+GGG + chr6_4:79210296-79210315 None:intergenic 70.0%
GTCCCCTGACGCTGTCCCGA+TGG - chr6_4:79210296-79210315 Msa0998350:CDS 70.0%
CGTCAGGGGACGGGAGAGGG+AGG + chr6_4:79210287-79210306 None:intergenic 75.0%
!!! GGTGGGGGGAGGGGGCGCTG+AGG - chr6_4:79210898-79210917 Msa0998350:intron 85.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 79209848 79215768 79209848 ID=Msa0998350;Name=Msa0998350
chr6_4 mRNA 79209848 79215768 79209848 ID=Msa0998350-mRNA-1;Parent=Msa0998350;Name=Msa0998350-mRNA-1;_AED=0.04;_eAED=0.04;_QI=242|1|1|1|0.75|0.6|5|319|310
chr6_4 exon 79209848 79210411 79209848 ID=Msa0998350-mRNA-1:exon:14952;Parent=Msa0998350-mRNA-1
chr6_4 exon 79210918 79211002 79210918 ID=Msa0998350-mRNA-1:exon:14951;Parent=Msa0998350-mRNA-1
chr6_4 exon 79213359 79213491 79213359 ID=Msa0998350-mRNA-1:exon:14950;Parent=Msa0998350-mRNA-1
chr6_4 exon 79215036 79215619 79215036 ID=Msa0998350-mRNA-1:exon:14949;Parent=Msa0998350-mRNA-1
chr6_4 exon 79215641 79215768 79215641 ID=Msa0998350-mRNA-1:exon:14948;Parent=Msa0998350-mRNA-1
chr6_4 five_prime_UTR 79215641 79215768 79215641 ID=Msa0998350-mRNA-1:five_prime_utr;Parent=Msa0998350-mRNA-1
chr6_4 five_prime_UTR 79215506 79215619 79215506 ID=Msa0998350-mRNA-1:five_prime_utr;Parent=Msa0998350-mRNA-1
chr6_4 CDS 79215036 79215505 79215036 ID=Msa0998350-mRNA-1:cds;Parent=Msa0998350-mRNA-1
chr6_4 CDS 79213359 79213491 79213359 ID=Msa0998350-mRNA-1:cds;Parent=Msa0998350-mRNA-1
chr6_4 CDS 79210918 79211002 79210918 ID=Msa0998350-mRNA-1:cds;Parent=Msa0998350-mRNA-1
chr6_4 CDS 79210167 79210411 79210167 ID=Msa0998350-mRNA-1:cds;Parent=Msa0998350-mRNA-1
chr6_4 three_prime_UTR 79209848 79210166 79209848 ID=Msa0998350-mRNA-1:three_prime_utr;Parent=Msa0998350-mRNA-1
Gene Sequence

>Msa0998350

ATGGAACCAAACAACTTCACAAGAAAACCACCACCAGTTATAATTGACTTAGAAAACATGCCACCATCACGTGGGACCCACCACCGCCGTTCCCACTCAGACACCACCTTCCGTTTCGCGGCAAACTTCGACGATCTTCTCACCTTCGACCCGTCCGACTTCGATATCTCCAACCTCCCTCTCCCGTCCCCTGACGCTGTCCCGATGGACTCTGATGAGTCCATCGGGAAGTCAGCGTCAGAGGGACGGCATCTCAGGAGTTTGTCTGTGGATTCAGAGTTTTTTGATGGGTTAGGGTTTGGTGGTGAAGGGGAAAAGGTTGAAGAGAGGAAGGTGAGTAGACATAGGTATAGTAGTTCCATGGATGGGTCTGAGATGGGGTTGTTTGAAGTTGGTGATGGTGTGAAGAAATCTATGCCGGCTGAGAAACTTGCTGAACTTGCTCTTATTGATCCTAAGAGAGCTAAAAGGATTCTTGCAAATAGACAATCTGCTGCACGATCGAAAGAGAGGAAAACTCGATATACAAGTGAGCTGGAGAGGAAAGTGCAGACGCTTCAAACTGAAGCAACTAACCTCTCTGCACAACTTACAGTCCTTCAGAGAGACACCACTGATTTGACTGCTCAGAATAAGGAGCTCAAAATGAAGTTAGATGCCTTCGAGCAACAAGCAAAGCTTAGAGAAGATCTCAATGAAGCATTGAAGAAAGAACTTCAACGCCTTAGGGCGCAAAAGAATCATTTGGCTGCCGTTGCCGGTAATCCTTCATTTAACGGGATGTTCTCGCAATTTGCTACACAATTAACCATGCAACAGATGAGTAATCCTCAACCCCAGCAGACACAACCTGGCATGCCGCCTTCTCGTTCTGATCAACCCTTCAACGGTCGTGGTCGCTCTAACTTCATGGACTTCAATTACCAAAAGTAG

Protein sequence

>Msa0998350

MEPNNFTRKPPPVIIDLENMPPSRGTHHRRSHSDTTFRFAANFDDLLTFDPSDFDISNLPLPSPDAVPMDSDESIGKSASEGRHLRSLSVDSEFFDGLGFGGEGEKVEERKVSRHRYSSSMDGSEMGLFEVGDGVKKSMPAEKLAELALIDPKRAKRILANRQSAARSKERKTRYTSELERKVQTLQTEATNLSAQLTVLQRDTTDLTAQNKELKMKLDAFEQQAKLREDLNEALKKELQRLRAQKNHLAAVAGNPSFNGMFSQFATQLTMQQMSNPQPQQTQPGMPPSRSDQPFNGRGRSNFMDFNYQK*