AlfalfaGEDB | Msa0998570

M. sativa cultivar zhongmu-4 / Msa0998570

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902446 GO:1902448 GO:1903506 GO:2000030 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998570	XP_024641461.2	96.727	275	6	1	1	275	1	272	0.0	558

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998570	sp\|Q8GWK7\|BEE3_ARATH	51.163	258	85	10	38	275	25	261	3.17e-63	202

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998570	A0A396HHQ6	96.727	275	6	1	1	275	1	272	0.0	558

TFs/TRs:

Gene ID	Type	Classification
Msa0998570	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998570	MtrunA17_Chr6g0484271	96.727	275	6	1	1	275	1	272	0.0	558
Msa0998570	MtrunA17_Chr7g0234761	61.062	113	43	1	126	238	286	397	2.75e-37	137
Msa0998570	MtrunA17_Chr8g0339091	62.136	103	39	0	136	238	269	371	1.41e-35	133
Msa0998570	MtrunA17_Chr5g0415291	56.881	109	40	1	129	230	76	184	5.02e-35	126
Msa0998570	MtrunA17_Chr3g0131771	64.894	94	32	1	149	241	138	231	2.12e-34	127
Msa0998570	MtrunA17_Chr8g0365941	58.559	111	44	1	127	237	276	384	6.14e-34	128
Msa0998570	MtrunA17_Chr3g0144641	46.405	153	69	2	100	241	122	272	8.08e-34	126
Msa0998570	MtrunA17_Chr5g0421111	63.366	101	36	1	139	238	345	445	1.21e-33	128
Msa0998570	MtrunA17_Chr4g0035101	54.472	123	42	2	127	235	98	220	2.02e-33	124
Msa0998570	MtrunA17_Chr8g0385911	62.766	94	34	1	149	241	136	229	4.91e-33	123
Msa0998570	MtrunA17_Chr8g0363921	40.625	192	71	6	92	244	60	247	8.17e-33	121
Msa0998570	MtrunA17_Chr1g0152131	60.000	100	39	1	139	237	240	339	2.33e-32	123
Msa0998570	MtrunA17_Chr1g0174161	67.500	80	26	0	156	235	158	237	2.83e-31	118
Msa0998570	MtrunA17_Chr7g0258161	67.500	80	26	0	156	235	171	250	1.56e-30	116
Msa0998570	MtrunA17_Chr4g0074161	62.121	66	24	1	158	223	206	270	1.89e-17	81.6
Msa0998570	MtrunA17_Chr1g0190731	59.091	66	26	1	158	223	193	257	1.47e-16	78.6
Msa0998570	MtrunA17_Chr1g0182791	45.570	79	42	1	145	223	304	381	2.73e-14	72.4
Msa0998570	MtrunA17_Chr1g0153241	44.304	79	43	1	146	224	73	150	2.43e-13	68.6
Msa0998570	MtrunA17_Chr5g0393721	43.529	85	47	1	138	222	204	287	2.78e-13	68.9
Msa0998570	MtrunA17_Chr4g0014771	49.231	65	33	0	158	222	118	182	5.11e-13	66.2
Msa0998570	MtrunA17_Chr4g0032951	49.231	65	33	0	158	222	355	419	9.53e-13	67.8
Msa0998570	MtrunA17_Chr1g0152651	50.769	65	31	1	158	222	274	337	9.66e-13	67.4
Msa0998570	MtrunA17_Chr3g0134741	44.318	88	44	2	135	222	210	292	3.66e-12	65.5
Msa0998570	MtrunA17_Chr1g0184841	57.576	66	27	1	158	223	120	184	4.13e-12	65.1
Msa0998570	MtrunA17_Chr1g0193321	30.114	176	102	5	65	223	355	526	1.54e-11	64.3
Msa0998570	MtrunA17_Chr7g0258181	46.269	67	36	0	158	224	243	309	2.44e-11	63.2
Msa0998570	MtrunA17_Chr7g0262691	43.038	79	43	2	145	223	240	316	5.41e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0998570	AT1G73830.1	51.163	258	85	10	38	275	25	261	3.22e-64	202
Msa0998570	AT1G73830.2	51.163	258	84	11	38	275	25	260	4.46e-62	196
Msa0998570	AT1G18400.1	78.704	108	23	0	155	262	142	249	3.86e-59	189
Msa0998570	AT1G18400.2	84.615	91	14	0	155	245	142	232	6.32e-53	172
Msa0998570	AT1G25330.1	64.407	118	41	1	148	264	94	211	4.75e-47	157
Msa0998570	AT5G50915.3	62.264	106	39	1	137	241	115	220	1.01e-38	137
Msa0998570	AT5G50915.4	62.264	106	39	1	137	241	115	220	1.01e-38	137
Msa0998570	AT5G50915.1	62.264	106	39	1	137	241	115	220	1.71e-38	137
Msa0998570	AT5G50915.2	62.264	106	39	1	137	241	115	220	1.71e-38	137
Msa0998570	AT3G07340.1	55.147	136	50	2	106	235	205	335	6.59e-37	136
Msa0998570	AT3G07340.2	58.197	122	45	1	120	235	214	335	8.79e-37	135
Msa0998570	AT5G48560.2	70.115	87	25	1	150	235	293	379	2.28e-34	129
Msa0998570	AT5G48560.1	70.115	87	25	1	150	235	293	379	3.90e-34	129
Msa0998570	AT1G26260.3	69.880	83	25	0	156	238	170	252	8.06e-34	125
Msa0998570	AT1G26260.5	69.880	83	25	0	156	238	199	281	1.96e-33	125
Msa0998570	AT1G26260.4	69.880	83	25	0	156	238	221	303	2.41e-33	125
Msa0998570	AT1G26260.1	69.880	83	25	0	156	238	221	303	2.41e-33	125
Msa0998570	AT1G26260.6	69.880	83	25	0	156	238	221	303	2.41e-33	125
Msa0998570	AT1G26260.2	69.880	83	25	0	156	238	221	303	2.41e-33	125
Msa0998570	AT1G68920.1	71.951	82	23	0	156	237	301	382	3.21e-33	126
Msa0998570	AT1G68920.4	71.951	82	23	0	156	237	301	382	3.21e-33	126
Msa0998570	AT1G68920.2	71.951	82	23	0	156	237	301	382	3.21e-33	126
Msa0998570	AT1G68920.3	71.951	82	23	0	156	237	300	381	3.34e-33	126
Msa0998570	AT3G23690.1	65.517	87	30	0	150	236	183	269	3.63e-33	124
Msa0998570	AT1G59640.1	64.444	90	27	1	146	230	119	208	4.36e-33	122
Msa0998570	AT4G34530.1	62.105	95	34	1	147	241	161	253	2.87e-32	121
Msa0998570	AT4G36540.2	61.386	101	36	2	146	245	128	226	5.38e-32	120
Msa0998570	AT4G36540.1	61.386	101	36	2	146	245	128	226	5.72e-32	120
Msa0998570	AT1G59640.2	64.444	90	27	1	146	230	119	208	1.02e-31	120
Msa0998570	AT3G57800.2	63.736	91	33	0	148	238	194	284	1.05e-31	120
Msa0998570	AT5G62610.2	69.737	76	23	0	150	225	145	220	1.83e-31	118
Msa0998570	AT5G62610.1	69.737	76	23	0	150	225	145	220	1.83e-31	118
Msa0998570	AT1G10120.2	59.596	99	38	1	143	241	191	287	2.68e-31	119
Msa0998570	AT1G10120.1	59.596	99	38	1	143	241	191	287	2.68e-31	119
Msa0998570	AT2G42300.4	66.250	80	27	0	156	235	183	262	1.50e-30	115
Msa0998570	AT2G42300.1	49.593	123	52	3	156	273	183	300	4.76e-30	115
Msa0998570	AT2G18300.2	55.455	110	41	1	126	227	145	254	3.07e-29	113
Msa0998570	AT2G18300.1	55.455	110	41	1	126	227	145	254	3.15e-29	113
Msa0998570	AT2G18300.3	55.455	110	41	1	126	227	145	254	5.81e-29	113
Msa0998570	AT3G57800.1	42.029	138	33	1	148	238	194	331	5.79e-23	97.8
Msa0998570	AT2G24260.2	54.321	81	35	2	158	237	35	114	1.30e-17	80.5
Msa0998570	AT4G30980.1	62.121	66	24	1	158	223	130	194	2.55e-17	80.5
Msa0998570	AT4G30980.2	62.121	66	24	1	158	223	178	242	3.29e-17	80.9
Msa0998570	AT2G24260.1	54.321	81	35	2	158	237	138	217	5.23e-17	80.1
Msa0998570	AT5G58010.1	61.194	67	25	1	157	223	98	163	5.42e-17	79.3
Msa0998570	AT2G42300.5	75.610	41	10	0	156	196	183	223	3.74e-14	70.5
Msa0998570	AT2G42300.3	75.610	41	10	0	156	196	183	223	3.74e-14	70.5
Msa0998570	AT2G42300.2	75.610	41	10	0	156	196	183	223	5.05e-14	70.1
Msa0998570	AT1G09530.3	36.552	145	77	5	98	232	267	406	2.46e-13	70.1
Msa0998570	AT1G09530.2	36.552	145	77	5	98	232	267	406	2.46e-13	70.1
Msa0998570	AT1G09530.5	36.552	145	77	5	98	232	267	406	2.46e-13	70.1
Msa0998570	AT1G09530.1	36.552	145	77	5	98	232	267	406	2.46e-13	70.1
Msa0998570	AT1G09530.4	36.552	145	77	5	98	232	267	406	2.46e-13	70.1
Msa0998570	AT1G09530.6	36.552	145	77	5	98	232	267	406	2.46e-13	70.1
Msa0998570	AT2G20180.7	42.857	77	43	1	147	223	196	271	3.52e-13	69.3
Msa0998570	AT2G20180.1	42.857	77	43	1	147	223	196	271	3.52e-13	69.3
Msa0998570	AT2G20180.5	42.857	77	43	1	147	223	196	271	3.52e-13	69.3
Msa0998570	AT2G20180.4	42.857	77	43	1	147	223	267	342	3.96e-13	69.3
Msa0998570	AT2G20180.6	42.857	77	43	1	147	223	267	342	3.96e-13	69.3
Msa0998570	AT2G20180.2	42.857	77	43	1	147	223	267	342	3.96e-13	69.3
Msa0998570	AT2G20180.3	42.857	77	43	1	147	223	267	342	3.96e-13	69.3
Msa0998570	AT1G27740.1	32.258	155	81	5	91	222	77	230	5.89e-13	67.4
Msa0998570	AT4G33880.1	40.496	121	63	4	106	222	214	329	1.45e-12	67.4
Msa0998570	AT2G46970.1	40.964	83	43	2	146	223	206	287	2.10e-12	67.0
Msa0998570	AT2G46970.3	40.964	83	43	2	146	223	184	265	2.63e-12	66.6
Msa0998570	AT2G46970.2	40.964	83	43	2	146	223	175	256	2.69e-12	66.6
Msa0998570	AT2G20180.8	43.243	74	41	1	147	220	267	339	3.98e-12	65.9
Msa0998570	AT1G03040.2	49.383	81	39	2	158	237	139	218	9.82e-12	64.3
Msa0998570	AT1G03040.1	49.383	81	39	2	158	237	144	223	1.09e-11	64.3
Msa0998570	AT4G28800.1	32.558	129	71	4	101	222	193	312	1.78e-11	64.3
Msa0998570	AT4G02590.3	56.061	66	28	1	158	223	83	147	1.91e-11	63.2
Msa0998570	AT1G03040.3	49.383	81	39	2	158	237	144	223	1.97e-11	63.9
Msa0998570	AT4G02590.2	56.061	66	28	1	158	223	146	210	2.34e-11	63.5
Msa0998570	AT4G02590.1	56.061	66	28	1	158	223	146	210	2.34e-11	63.5
Msa0998570	AT4G00050.2	45.333	75	40	1	148	222	95	168	2.51e-11	63.2
Msa0998570	AT1G35460.1	44.776	67	37	0	156	222	179	245	2.85e-11	62.8
Msa0998570	AT4G09180.1	45.455	66	36	0	157	222	183	248	3.13e-11	62.8
Msa0998570	AT4G28815.2	36.585	82	47	2	161	238	71	151	4.76e-11	61.6
Msa0998570	AT4G00050.1	45.333	75	40	1	148	222	197	270	5.30e-11	62.8
Msa0998570	AT4G00050.3	45.333	75	40	1	148	222	197	270	6.44e-11	62.4
Msa0998570	AT4G28790.1	46.875	64	33	1	160	223	273	335	6.62e-11	62.8
Msa0998570	AT2G43140.1	48.485	66	34	0	156	221	132	197	6.91e-11	60.8
Msa0998570	AT4G28800.2	31.884	138	77	5	101	230	205	333	7.58e-11	62.4

Find 43 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGCCACTTTGACTTCAATTT+TGG	0.136033	6_4:+79646514	Msa0998570:exon
TAAACTTTGTAGAAAGTAAA+AGG	0.223600	6_4:-79646590	None:intergenic
AAATTCTCTTCCAAGTTTCT+TGG	0.225496	6_4:-79644664	None:intergenic
GTAGAAGAAATTTACAAGTT+TGG	0.255043	6_4:-79644866	None:intergenic
AAGATGCTGTCACAAGAAAA+AGG	0.352093	6_4:-79644604	None:intergenic
TAATGTCCACTTGTGCTTGT+AGG	0.352567	6_4:-79646642	None:intergenic
GGAACTGTTGAATCAATTCA+TGG	0.423954	6_4:+79644546	Msa0998570:CDS
TGCTTGCAGAATATTGTTCC+AGG	0.427390	6_4:+79645534	Msa0998570:CDS
ACTCCTGCAGTTTCTGAAAG+TGG	0.440216	6_4:+79644835	Msa0998570:CDS
CTTCCACTTTCAGAAACTGC+AGG	0.466079	6_4:-79644838	None:intergenic
TTGCTTGCTTTCAACCAACT+TGG	0.490280	6_4:+79646493	Msa0998570:CDS
TATTGTTCCAGGATGTTACA+AGG	0.493701	6_4:+79645545	Msa0998570:CDS
TAGCAAGGTATAAGAGAGAA+GGG	0.498236	6_4:+79646460	Msa0998570:CDS
GAAAATAAAGTTCATCATGA+AGG	0.498927	6_4:+79644763	Msa0998570:CDS
TTGATTTGTGGCAGAGAGCA+AGG	0.504432	6_4:+79646418	Msa0998570:intron
GTTCAATGGTTGCAGACCAT+GGG	0.515237	6_4:+79645664	Msa0998570:intron
AGGTATAAGAGAGAAGGGTA+TGG	0.517402	6_4:+79646465	Msa0998570:CDS
AGAATCAAGAAAAGGAAAAG+AGG	0.517457	6_4:-79644512	None:intergenic
TTAGCAAGGTATAAGAGAGA+AGG	0.520461	6_4:+79646459	Msa0998570:CDS
TGAAGTCAAAGTGGCCAAGT+TGG	0.520695	6_4:-79646507	None:intergenic
ATATTAACCTTGTAACATCC+TGG	0.520795	6_4:-79645552	None:intergenic
TAATTTCAGAGTGGTGGAAG+AGG	0.521842	6_4:+79644970	Msa0998570:intron
TATGATTAATTTCAGAGTGG+TGG	0.522541	6_4:+79644964	Msa0998570:intron
CTTTGATCAGAATCAAGAAA+AGG	0.523599	6_4:-79644520	None:intergenic
TAGTCACAGTCTAGCAGAAA+GGG	0.525871	6_4:+79645077	Msa0998570:CDS
TATAAGAGAGAAGGGTATGG+AGG	0.527385	6_4:+79646468	Msa0998570:CDS
CATGGGAATGGCAGTAATGT+TGG	0.527745	6_4:+79645681	Msa0998570:CDS
TCTTGATTCTGATCAAAGCA+TGG	0.528750	6_4:+79644525	Msa0998570:CDS
TTGTTATTCAGGTTAGAAGA+GGG	0.541611	6_4:+79645490	Msa0998570:intron
ATAGTCACAGTCTAGCAGAA+AGG	0.561228	6_4:+79645076	Msa0998570:CDS
TGATTTGTGGCAGAGAGCAA+GGG	0.569667	6_4:+79646419	Msa0998570:intron
CTGAAGCAAAAGAGTTAGCA+AGG	0.571614	6_4:+79646445	Msa0998570:CDS
TGATTTATTGAAATCTCACA+TGG	0.580943	6_4:+79644453	Msa0998570:intron
GAATCAAGAAAAGGAAAAGA+GGG	0.581709	6_4:-79644511	None:intergenic
ATCCAAAATTGAAGTCAAAG+TGG	0.583596	6_4:-79646516	None:intergenic
ATGCTACCTACAAGCACAAG+TGG	0.585163	6_4:+79646636	Msa0998570:three_prime_UTR
GTTCATGTTAGAGCAAGAAG+AGG	0.589317	6_4:+79645042	Msa0998570:CDS
TTTGTTATTCAGGTTAGAAG+AGG	0.590695	6_4:+79645489	Msa0998570:intron
ATGGTTGCAGACCATGGGAA+TGG	0.592994	6_4:+79645669	Msa0998570:intron
AACAGAAGAAGAGAAAGCAA+AGG	0.600831	6_4:+79645014	Msa0998570:CDS
CAACATTACTGCCATTCCCA+TGG	0.603267	6_4:-79645680	None:intergenic
TGCTTGTAGGTAGCATAGAG+TGG	0.610971	6_4:-79646629	None:intergenic
AGATGATCTAGAAACAATGC+AGG	0.618754	6_4:+79645928	Msa0998570:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTATATTTTTAAAAATTAAA+AGG	-	chr6_4:79645583-79645602	None:intergenic	0.0%
!!!	TTATATTTTTAAAAATTAAA+AGG	-	chr6_4:79645583-79645602	None:intergenic	0.0%
!!	GATGAAATTAAATTATTAAA+TGG	+	chr6_4:79644927-79644946	Msa0998570:intron	10.0%
!!!	TTTTTTTTTTCTTTTTTTTG+AGG	-	chr6_4:79645820-79645839	None:intergenic	10.0%
!!!	TTATTTATTTATTTGATTTG+TGG	+	chr6_4:79646406-79646425	Msa0998570:intron	10.0%
!!	AAAAATATATAATAACATGT+AGG	-	chr6_4:79646719-79646738	None:intergenic	10.0%
!!	GATGAAATTAAATTATTAAA+TGG	+	chr6_4:79644927-79644946	Msa0998570:intron	10.0%
!!!	TTTTTTTTTTCTTTTTTTTG+AGG	-	chr6_4:79645820-79645839	None:intergenic	10.0%
!!!	TTATTTATTTATTTGATTTG+TGG	+	chr6_4:79646406-79646425	Msa0998570:intron	10.0%
!!	AAAAATATATAATAACATGT+AGG	-	chr6_4:79646719-79646738	None:intergenic	10.0%
!!!	TAAGCTATTTCTATAATAAA+TGG	+	chr6_4:79645169-79645188	Msa0998570:intron	15.0%
!!!	AAATCAAACTGTTTTATATA+AGG	+	chr6_4:79645199-79645218	Msa0998570:intron	15.0%
!!	AAGTTGAAAAAAAAAACTTA+TGG	+	chr6_4:79645265-79645284	Msa0998570:intron	15.0%
!!	AAATAATGTGAATTTATGTT+TGG	+	chr6_4:79645837-79645856	Msa0998570:intron	15.0%
!!!	GGTTAATTTTTTTAAAAGAA+AGG	+	chr6_4:79646192-79646211	Msa0998570:intron	15.0%
!!!	TAAGCTATTTCTATAATAAA+TGG	+	chr6_4:79645169-79645188	Msa0998570:intron	15.0%
!!!	AAATCAAACTGTTTTATATA+AGG	+	chr6_4:79645199-79645218	Msa0998570:intron	15.0%
!!	AAGTTGAAAAAAAAAACTTA+TGG	+	chr6_4:79645265-79645284	Msa0998570:intron	15.0%
!!	AAATAATGTGAATTTATGTT+TGG	+	chr6_4:79645837-79645856	Msa0998570:intron	15.0%
!!!	GGTTAATTTTTTTAAAAGAA+AGG	+	chr6_4:79646192-79646211	Msa0998570:intron	15.0%
!!!	TTTTCTTCTTGAAAAATTGT+TGG	-	chr6_4:79644748-79644767	None:intergenic	20.0%
!!	CACTTAATTAACCTATATTT+AGG	-	chr6_4:79645111-79645130	None:intergenic	20.0%
!!!	TATCAAATTTTCTTCTATCT+TGG	+	chr6_4:79645420-79645439	Msa0998570:intron	20.0%
!!!	CTGTTTTTTTTTTGTTATTC+AGG	+	chr6_4:79645479-79645498	Msa0998570:intron	20.0%
!!!	CTTATTTTCTTTTTGTTCAA+TGG	+	chr6_4:79645650-79645669	Msa0998570:intron	20.0%
!!!	ATCTATTTCTAAAAGTTTCA+TGG	+	chr6_4:79645955-79645974	Msa0998570:intron	20.0%
!!	AAGTTAAAATTCATTAGAGT+TGG	+	chr6_4:79646096-79646115	Msa0998570:intron	20.0%
!!!	ATTTTTTCATGTCTTGTATA+TGG	-	chr6_4:79646557-79646576	None:intergenic	20.0%
!!	TAAACTTTGTAGAAAGTAAA+AGG	-	chr6_4:79646593-79646612	None:intergenic	20.0%
!!!	TTTTCTTCTTGAAAAATTGT+TGG	-	chr6_4:79644748-79644767	None:intergenic	20.0%
!!	CACTTAATTAACCTATATTT+AGG	-	chr6_4:79645111-79645130	None:intergenic	20.0%
!!!	TATCAAATTTTCTTCTATCT+TGG	+	chr6_4:79645420-79645439	Msa0998570:intron	20.0%
!!!	CTGTTTTTTTTTTGTTATTC+AGG	+	chr6_4:79645479-79645498	Msa0998570:intron	20.0%
!!!	CTTATTTTCTTTTTGTTCAA+TGG	+	chr6_4:79645650-79645669	Msa0998570:intron	20.0%
!!!	ATCTATTTCTAAAAGTTTCA+TGG	+	chr6_4:79645955-79645974	Msa0998570:intron	20.0%
!!	AAGTTAAAATTCATTAGAGT+TGG	+	chr6_4:79646096-79646115	Msa0998570:intron	20.0%
!!!	ATTTTTTCATGTCTTGTATA+TGG	-	chr6_4:79646557-79646576	None:intergenic	20.0%
!!	TAAACTTTGTAGAAAGTAAA+AGG	-	chr6_4:79646593-79646612	None:intergenic	20.0%
!	TGATTTATTGAAATCTCACA+TGG	+	chr6_4:79644453-79644472	Msa0998570:intron	25.0%
!	GAAAATAAAGTTCATCATGA+AGG	+	chr6_4:79644763-79644782	Msa0998570:CDS	25.0%
!	AGGTAAAAAGAGAAAAATGA+TGG	+	chr6_4:79644783-79644802	Msa0998570:CDS	25.0%
!	GTAGAAGAAATTTACAAGTT+TGG	-	chr6_4:79644869-79644888	None:intergenic	25.0%
!	TTCTATGATTAATTTCAGAG+TGG	+	chr6_4:79644961-79644980	Msa0998570:intron	25.0%
!	GGGTATAATTTCCTAAATAT+AGG	+	chr6_4:79645097-79645116	Msa0998570:intron	25.0%
!!!	AGACTATTTTGAAGAGTTTA+TGG	-	chr6_4:79645309-79645328	None:intergenic	25.0%
!!	TATAACATGCTCATTTTGTA+TGG	+	chr6_4:79646010-79646029	Msa0998570:intron	25.0%
!	AAATTGGACAAAGTTTATGT+AGG	-	chr6_4:79646271-79646290	None:intergenic	25.0%
!	TGATTTATTGAAATCTCACA+TGG	+	chr6_4:79644453-79644472	Msa0998570:intron	25.0%
!	GAAAATAAAGTTCATCATGA+AGG	+	chr6_4:79644763-79644782	Msa0998570:CDS	25.0%
!	AGGTAAAAAGAGAAAAATGA+TGG	+	chr6_4:79644783-79644802	Msa0998570:CDS	25.0%
!	GTAGAAGAAATTTACAAGTT+TGG	-	chr6_4:79644869-79644888	None:intergenic	25.0%
!	TTCTATGATTAATTTCAGAG+TGG	+	chr6_4:79644961-79644980	Msa0998570:intron	25.0%
!	GGGTATAATTTCCTAAATAT+AGG	+	chr6_4:79645097-79645116	Msa0998570:intron	25.0%
!!!	AGACTATTTTGAAGAGTTTA+TGG	-	chr6_4:79645309-79645328	None:intergenic	25.0%
!!	TATAACATGCTCATTTTGTA+TGG	+	chr6_4:79646010-79646029	Msa0998570:intron	25.0%
!	AAATTGGACAAAGTTTATGT+AGG	-	chr6_4:79646271-79646290	None:intergenic	25.0%
	GAATCAAGAAAAGGAAAAGA+GGG	-	chr6_4:79644514-79644533	None:intergenic	30.0%
	AGAATCAAGAAAAGGAAAAG+AGG	-	chr6_4:79644515-79644534	None:intergenic	30.0%
	CTTTGATCAGAATCAAGAAA+AGG	-	chr6_4:79644523-79644542	None:intergenic	30.0%
!	ACATGTTTTTCCAAGAAACT+TGG	+	chr6_4:79644654-79644673	Msa0998570:CDS	30.0%
	AAATTCTCTTCCAAGTTTCT+TGG	-	chr6_4:79644667-79644686	None:intergenic	30.0%
!	AACTTGGAAGAGAATTTTCA+TGG	+	chr6_4:79644670-79644689	Msa0998570:CDS	30.0%
!!!	GATTTTGATTATTGACATGC+TGG	-	chr6_4:79644702-79644721	None:intergenic	30.0%
	TATGATTAATTTCAGAGTGG+TGG	+	chr6_4:79644964-79644983	Msa0998570:intron	30.0%
!!	ACTTATTTTCTTAAGCTCAC+CGG	-	chr6_4:79645249-79645268	None:intergenic	30.0%
	TGGTTCATAATTGATGTGTA+TGG	+	chr6_4:79645440-79645459	Msa0998570:intron	30.0%
!!	TTTGTTATTCAGGTTAGAAG+AGG	+	chr6_4:79645489-79645508	Msa0998570:intron	30.0%
!	TTGTTATTCAGGTTAGAAGA+GGG	+	chr6_4:79645490-79645509	Msa0998570:intron	30.0%
	ATATTAACCTTGTAACATCC+TGG	-	chr6_4:79645555-79645574	None:intergenic	30.0%
!	CTCATTTTGTATGGTTGTTA+GGG	+	chr6_4:79646019-79646038	Msa0998570:intron	30.0%
	AGTCTCAATATTAGTCCTAT+TGG	-	chr6_4:79646299-79646318	None:intergenic	30.0%
	ATCCAAAATTGAAGTCAAAG+TGG	-	chr6_4:79646519-79646538	None:intergenic	30.0%
!!	ACTTTGACTTCAATTTTGGA+TGG	+	chr6_4:79646518-79646537	Msa0998570:exon	30.0%
	GAATCAAGAAAAGGAAAAGA+GGG	-	chr6_4:79644514-79644533	None:intergenic	30.0%
	AGAATCAAGAAAAGGAAAAG+AGG	-	chr6_4:79644515-79644534	None:intergenic	30.0%
	CTTTGATCAGAATCAAGAAA+AGG	-	chr6_4:79644523-79644542	None:intergenic	30.0%
!	ACATGTTTTTCCAAGAAACT+TGG	+	chr6_4:79644654-79644673	Msa0998570:CDS	30.0%
	AAATTCTCTTCCAAGTTTCT+TGG	-	chr6_4:79644667-79644686	None:intergenic	30.0%
!	AACTTGGAAGAGAATTTTCA+TGG	+	chr6_4:79644670-79644689	Msa0998570:CDS	30.0%
!!!	GATTTTGATTATTGACATGC+TGG	-	chr6_4:79644702-79644721	None:intergenic	30.0%
	TATGATTAATTTCAGAGTGG+TGG	+	chr6_4:79644964-79644983	Msa0998570:intron	30.0%
!!	ACTTATTTTCTTAAGCTCAC+CGG	-	chr6_4:79645249-79645268	None:intergenic	30.0%
	TGGTTCATAATTGATGTGTA+TGG	+	chr6_4:79645440-79645459	Msa0998570:intron	30.0%
!!	TTTGTTATTCAGGTTAGAAG+AGG	+	chr6_4:79645489-79645508	Msa0998570:intron	30.0%
!	TTGTTATTCAGGTTAGAAGA+GGG	+	chr6_4:79645490-79645509	Msa0998570:intron	30.0%
	ATATTAACCTTGTAACATCC+TGG	-	chr6_4:79645555-79645574	None:intergenic	30.0%
!	CTCATTTTGTATGGTTGTTA+GGG	+	chr6_4:79646019-79646038	Msa0998570:intron	30.0%
	AGTCTCAATATTAGTCCTAT+TGG	-	chr6_4:79646299-79646318	None:intergenic	30.0%
	ATCCAAAATTGAAGTCAAAG+TGG	-	chr6_4:79646519-79646538	None:intergenic	30.0%
!!	ACTTTGACTTCAATTTTGGA+TGG	+	chr6_4:79646518-79646537	Msa0998570:exon	30.0%
	TCTTGATTCTGATCAAAGCA+TGG	+	chr6_4:79644525-79644544	Msa0998570:CDS	35.0%
	GGAACTGTTGAATCAATTCA+TGG	+	chr6_4:79644546-79644565	Msa0998570:CDS	35.0%
	AAGATGCTGTCACAAGAAAA+AGG	-	chr6_4:79644607-79644626	None:intergenic	35.0%
!	TTTTTCTTGTGACAGCATCT+TGG	+	chr6_4:79644606-79644625	Msa0998570:CDS	35.0%
!!	GATTTTCAAGAGACTAGTTC+TGG	+	chr6_4:79644805-79644824	Msa0998570:CDS	35.0%
	AACAGAAGAAGAGAAAGCAA+AGG	+	chr6_4:79645014-79645033	Msa0998570:CDS	35.0%
	TATTGTTCCAGGATGTTACA+AGG	+	chr6_4:79645545-79645564	Msa0998570:CDS	35.0%
	AGATGATCTAGAAACAATGC+AGG	+	chr6_4:79645928-79645947	Msa0998570:CDS	35.0%
!	GCTCATTTTGTATGGTTGTT+AGG	+	chr6_4:79646018-79646037	Msa0998570:intron	35.0%
	ATATACGCTAACTGTTGTGA+TGG	+	chr6_4:79646071-79646090	Msa0998570:intron	35.0%
	TTGGACAAAGTTTATGTAGG+AGG	-	chr6_4:79646268-79646287	None:intergenic	35.0%
!!	TGTCCAATTTTAGCACCAAT+AGG	+	chr6_4:79646281-79646300	Msa0998570:intron	35.0%
!!	AGTCCTATTGGTGCTAAAAT+TGG	-	chr6_4:79646287-79646306	None:intergenic	35.0%
	TTAGCAAGGTATAAGAGAGA+AGG	+	chr6_4:79646459-79646478	Msa0998570:CDS	35.0%
	TAGCAAGGTATAAGAGAGAA+GGG	+	chr6_4:79646460-79646479	Msa0998570:CDS	35.0%
	TCTTGATTCTGATCAAAGCA+TGG	+	chr6_4:79644525-79644544	Msa0998570:CDS	35.0%
	GGAACTGTTGAATCAATTCA+TGG	+	chr6_4:79644546-79644565	Msa0998570:CDS	35.0%
	AAGATGCTGTCACAAGAAAA+AGG	-	chr6_4:79644607-79644626	None:intergenic	35.0%
!	TTTTTCTTGTGACAGCATCT+TGG	+	chr6_4:79644606-79644625	Msa0998570:CDS	35.0%
!!	GATTTTCAAGAGACTAGTTC+TGG	+	chr6_4:79644805-79644824	Msa0998570:CDS	35.0%
	AACAGAAGAAGAGAAAGCAA+AGG	+	chr6_4:79645014-79645033	Msa0998570:CDS	35.0%
	TATTGTTCCAGGATGTTACA+AGG	+	chr6_4:79645545-79645564	Msa0998570:CDS	35.0%
	AGATGATCTAGAAACAATGC+AGG	+	chr6_4:79645928-79645947	Msa0998570:CDS	35.0%
!	GCTCATTTTGTATGGTTGTT+AGG	+	chr6_4:79646018-79646037	Msa0998570:intron	35.0%
	ATATACGCTAACTGTTGTGA+TGG	+	chr6_4:79646071-79646090	Msa0998570:intron	35.0%
	TTGGACAAAGTTTATGTAGG+AGG	-	chr6_4:79646268-79646287	None:intergenic	35.0%
!!	TGTCCAATTTTAGCACCAAT+AGG	+	chr6_4:79646281-79646300	Msa0998570:intron	35.0%
!!	AGTCCTATTGGTGCTAAAAT+TGG	-	chr6_4:79646287-79646306	None:intergenic	35.0%
	TTAGCAAGGTATAAGAGAGA+AGG	+	chr6_4:79646459-79646478	Msa0998570:CDS	35.0%
	TAGCAAGGTATAAGAGAGAA+GGG	+	chr6_4:79646460-79646479	Msa0998570:CDS	35.0%
!	TAATTTCAGAGTGGTGGAAG+AGG	+	chr6_4:79644970-79644989	Msa0998570:intron	40.0%
	GTTCATGTTAGAGCAAGAAG+AGG	+	chr6_4:79645042-79645061	Msa0998570:CDS	40.0%
	ATAGTCACAGTCTAGCAGAA+AGG	+	chr6_4:79645076-79645095	Msa0998570:CDS	40.0%
	TAGTCACAGTCTAGCAGAAA+GGG	+	chr6_4:79645077-79645096	Msa0998570:CDS	40.0%
!!	GTTGTTTTCGTAAGCTACAC+CGG	+	chr6_4:79645227-79645246	Msa0998570:intron	40.0%
	TGCTTGCAGAATATTGTTCC+AGG	+	chr6_4:79645534-79645553	Msa0998570:CDS	40.0%
	CTGAAGCAAAAGAGTTAGCA+AGG	+	chr6_4:79646445-79646464	Msa0998570:CDS	40.0%
	AGGTATAAGAGAGAAGGGTA+TGG	+	chr6_4:79646465-79646484	Msa0998570:CDS	40.0%
!	TATAAGAGAGAAGGGTATGG+AGG	+	chr6_4:79646468-79646487	Msa0998570:CDS	40.0%
	TTGCTTGCTTTCAACCAACT+TGG	+	chr6_4:79646493-79646512	Msa0998570:CDS	40.0%
!!	GGCCACTTTGACTTCAATTT+TGG	+	chr6_4:79646514-79646533	Msa0998570:exon	40.0%
	TAATGTCCACTTGTGCTTGT+AGG	-	chr6_4:79646645-79646664	None:intergenic	40.0%
!	TAATTTCAGAGTGGTGGAAG+AGG	+	chr6_4:79644970-79644989	Msa0998570:intron	40.0%
	GTTCATGTTAGAGCAAGAAG+AGG	+	chr6_4:79645042-79645061	Msa0998570:CDS	40.0%
	ATAGTCACAGTCTAGCAGAA+AGG	+	chr6_4:79645076-79645095	Msa0998570:CDS	40.0%
	TAGTCACAGTCTAGCAGAAA+GGG	+	chr6_4:79645077-79645096	Msa0998570:CDS	40.0%
!!	GTTGTTTTCGTAAGCTACAC+CGG	+	chr6_4:79645227-79645246	Msa0998570:intron	40.0%
	TGCTTGCAGAATATTGTTCC+AGG	+	chr6_4:79645534-79645553	Msa0998570:CDS	40.0%
	CTGAAGCAAAAGAGTTAGCA+AGG	+	chr6_4:79646445-79646464	Msa0998570:CDS	40.0%
	AGGTATAAGAGAGAAGGGTA+TGG	+	chr6_4:79646465-79646484	Msa0998570:CDS	40.0%
!	TATAAGAGAGAAGGGTATGG+AGG	+	chr6_4:79646468-79646487	Msa0998570:CDS	40.0%
	TTGCTTGCTTTCAACCAACT+TGG	+	chr6_4:79646493-79646512	Msa0998570:CDS	40.0%
!!	GGCCACTTTGACTTCAATTT+TGG	+	chr6_4:79646514-79646533	Msa0998570:exon	40.0%
	TAATGTCCACTTGTGCTTGT+AGG	-	chr6_4:79646645-79646664	None:intergenic	40.0%
!	ACTCCTGCAGTTTCTGAAAG+TGG	+	chr6_4:79644835-79644854	Msa0998570:CDS	45.0%
	CTTCCACTTTCAGAAACTGC+AGG	-	chr6_4:79644841-79644860	None:intergenic	45.0%
	TGTTCAATGGTTGCAGACCA+TGG	+	chr6_4:79645663-79645682	Msa0998570:intron	45.0%
	GTTCAATGGTTGCAGACCAT+GGG	+	chr6_4:79645664-79645683	Msa0998570:intron	45.0%
	CAACATTACTGCCATTCCCA+TGG	-	chr6_4:79645683-79645702	None:intergenic	45.0%
	CATGGGAATGGCAGTAATGT+TGG	+	chr6_4:79645681-79645700	Msa0998570:CDS	45.0%
!!	TTGATTTGTGGCAGAGAGCA+AGG	+	chr6_4:79646418-79646437	Msa0998570:intron	45.0%
!	TGATTTGTGGCAGAGAGCAA+GGG	+	chr6_4:79646419-79646438	Msa0998570:intron	45.0%
	TGAAGTCAAAGTGGCCAAGT+TGG	-	chr6_4:79646510-79646529	None:intergenic	45.0%
	TGCTTGTAGGTAGCATAGAG+TGG	-	chr6_4:79646632-79646651	None:intergenic	45.0%
	ATGCTACCTACAAGCACAAG+TGG	+	chr6_4:79646636-79646655	Msa0998570:three_prime_UTR	45.0%
!	ACTCCTGCAGTTTCTGAAAG+TGG	+	chr6_4:79644835-79644854	Msa0998570:CDS	45.0%
	CTTCCACTTTCAGAAACTGC+AGG	-	chr6_4:79644841-79644860	None:intergenic	45.0%
	TGTTCAATGGTTGCAGACCA+TGG	+	chr6_4:79645663-79645682	Msa0998570:intron	45.0%
	GTTCAATGGTTGCAGACCAT+GGG	+	chr6_4:79645664-79645683	Msa0998570:intron	45.0%
	CAACATTACTGCCATTCCCA+TGG	-	chr6_4:79645683-79645702	None:intergenic	45.0%
	CATGGGAATGGCAGTAATGT+TGG	+	chr6_4:79645681-79645700	Msa0998570:CDS	45.0%
!!	TTGATTTGTGGCAGAGAGCA+AGG	+	chr6_4:79646418-79646437	Msa0998570:intron	45.0%
!	TGATTTGTGGCAGAGAGCAA+GGG	+	chr6_4:79646419-79646438	Msa0998570:intron	45.0%
	TGAAGTCAAAGTGGCCAAGT+TGG	-	chr6_4:79646510-79646529	None:intergenic	45.0%
	TGCTTGTAGGTAGCATAGAG+TGG	-	chr6_4:79646632-79646651	None:intergenic	45.0%
	ATGCTACCTACAAGCACAAG+TGG	+	chr6_4:79646636-79646655	Msa0998570:three_prime_UTR	45.0%
!!	TTATATTTAGTAATATTTAT+AGG	+	chr6_4:79646171-79646190	Msa0998570:intron	5.0%
!!!	TTAAAAAACTTTTTTTTAAA+AGG	-	chr6_4:79646330-79646349	None:intergenic	5.0%
!!	TTATATTTAGTAATATTTAT+AGG	+	chr6_4:79646171-79646190	Msa0998570:intron	5.0%
!!!	TTAAAAAACTTTTTTTTAAA+AGG	-	chr6_4:79646330-79646349	None:intergenic	5.0%
	ATGGTTGCAGACCATGGGAA+TGG	+	chr6_4:79645669-79645688	Msa0998570:intron	50.0%
	ATGGTTGCAGACCATGGGAA+TGG	+	chr6_4:79645669-79645688	Msa0998570:intron	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	79644396	79646739	79644396	ID=Msa0998570;Name=Msa0998570
chr6_4	mRNA	79644396	79646739	79644396	ID=Msa0998570-mRNA-1;Parent=Msa0998570;Name=Msa0998570-mRNA-1;_AED=0.05;_eAED=0.05;_QI=56\|1\|1\|1\|0.83\|0.71\|7\|215\|275
chr6_4	exon	79644396	79644442	79644396	ID=Msa0998570-mRNA-1:exon:15038;Parent=Msa0998570-mRNA-1
chr6_4	exon	79644463	79644873	79644463	ID=Msa0998570-mRNA-1:exon:15039;Parent=Msa0998570-mRNA-1
chr6_4	exon	79644979	79645098	79644979	ID=Msa0998570-mRNA-1:exon:15040;Parent=Msa0998570-mRNA-1
chr6_4	exon	79645501	79645566	79645501	ID=Msa0998570-mRNA-1:exon:15041;Parent=Msa0998570-mRNA-1
chr6_4	exon	79645679	79645747	79645679	ID=Msa0998570-mRNA-1:exon:15042;Parent=Msa0998570-mRNA-1
chr6_4	exon	79645872	79645949	79645872	ID=Msa0998570-mRNA-1:exon:15043;Parent=Msa0998570-mRNA-1
chr6_4	exon	79646432	79646739	79646432	ID=Msa0998570-mRNA-1:exon:15044;Parent=Msa0998570-mRNA-1
chr6_4	five_prime_UTR	79644396	79644442	79644396	ID=Msa0998570-mRNA-1:five_prime_utr;Parent=Msa0998570-mRNA-1
chr6_4	five_prime_UTR	79644463	79644471	79644463	ID=Msa0998570-mRNA-1:five_prime_utr;Parent=Msa0998570-mRNA-1
chr6_4	CDS	79644472	79644873	79644472	ID=Msa0998570-mRNA-1:cds;Parent=Msa0998570-mRNA-1
chr6_4	CDS	79644979	79645098	79644979	ID=Msa0998570-mRNA-1:cds;Parent=Msa0998570-mRNA-1
chr6_4	CDS	79645501	79645566	79645501	ID=Msa0998570-mRNA-1:cds;Parent=Msa0998570-mRNA-1
chr6_4	CDS	79645679	79645747	79645679	ID=Msa0998570-mRNA-1:cds;Parent=Msa0998570-mRNA-1
chr6_4	CDS	79645872	79645949	79645872	ID=Msa0998570-mRNA-1:cds;Parent=Msa0998570-mRNA-1
chr6_4	CDS	79646432	79646524	79646432	ID=Msa0998570-mRNA-1:cds;Parent=Msa0998570-mRNA-1
chr6_4	three_prime_UTR	79646525	79646739	79646525	ID=Msa0998570-mRNA-1:three_prime_utr;Parent=Msa0998570-mRNA-1

Gene Sequence

>Msa0998570

ATGGCTGAATTCACAGAAAATTTTCAAAATATTATTAGACCCTCTTTTCCTTTTCTTGATTCTGATCAAAGCATGGAACTGTTGAATCAATTCATGGAAAATTCAAACATGAACATGATGCATAATTTGATGCCTTTTTCTTGTGACAGCATCTTGGAACATCATCAACAACAAGAACAAGAACATGTTTTTCCAAGAAACTTGGAAGAGAATTTTCATGGTCTTGTCCAGCATGTCAATAATCAAAATCACAATGCAGTTCAACTTTCACTTCCAACAATTTTTCAAGAAGAAAATAAAGTTCATCATGAAGGTAAAAAGAGAAAAATGATGGATTTTCAAGAGACTAGTTCTGGAAATTCAACTCCTGCAGTTTCTGAAAGTGGAAGCAAATCCAAACTTAGTGGTGGAAGAGGAAAACGAGTGAAAAGCTATGAAACAGAAGAAGAGAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTCTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTGAAGTGCTTGCAGAATATTGTTCCAGGATGTTACAAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGCATCAAGTAGAATTTCTTTCTTTGAAGCTTACTGCAGCAAGTACTTATTATGACTTCAATTCAGAGACAGATGATCTAGAAACAATGCAGAGAGCAAGGGCATCTGAAGCAAAAGAGTTAGCAAGGTATAAGAGAGAAGGGTATGGAGGAATTGCTTGCTTTCAACCAACTTGGCCACTTTGA

Protein sequence

>Msa0998570

MAEFTENFQNIIRPSFPFLDSDQSMELLNQFMENSNMNMMHNLMPFSCDSILEHHQQQEQEHVFPRNLEENFHGLVQHVNNQNHNAVQLSLPTIFQEENKVHHEGKKRKMMDFQETSSGNSTPAVSESGSKSKLSGGRGKRVKSYETEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDDLETMQRARASEAKELARYKREGYGGIACFQPTWPL*