Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998980 | XP_013453051.1 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 738 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998980 | sp|P70122|SBDS_MOUSE | 49.593 | 246 | 121 | 2 | 4 | 247 | 2 | 246 | 1.35e-77 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998980 | A0A072UBA1 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 738 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0998980 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998980 | MtrunA17_Chr6g0485001 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 738 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998980 | AT1G43860.1 | 62.264 | 371 | 126 | 5 | 1 | 358 | 1 | 370 | 2.89e-166 | 469 |
| Msa0998980 | AT1G43860.2 | 57.101 | 345 | 125 | 6 | 27 | 358 | 1 | 335 | 4.71e-135 | 388 |
Find 93 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTATTCTCAAGCTTCTT+AGG | 0.136608 | 6_4:+80519853 | Msa0998980:three_prime_UTR |
| GCACAGATTCAGAAGTTCTT+TGG | 0.262575 | 6_4:-80519217 | None:intergenic |
| ACAGGCTTTGGAGTTGATTC+AGG | 0.278478 | 6_4:+80517758 | Msa0998980:intron |
| CACAGATTCAGAAGTTCTTT+GGG | 0.286481 | 6_4:-80519216 | None:intergenic |
| TCATTCCAGTATTTGCTTAG+AGG | 0.304623 | 6_4:+80514694 | Msa0998980:CDS |
| TCAGACTGTCCTAACAAAAT+AGG | 0.314221 | 6_4:-80519604 | None:intergenic |
| ATTAAAAGTTGTTAAATTGC+AGG | 0.314513 | 6_4:-80519907 | None:intergenic |
| TGCTTCTTGGAGGTGCTGTT+TGG | 0.331667 | 6_4:-80517646 | None:intergenic |
| CAATGCTGTCTAGTCAGTTC+AGG | 0.331986 | 6_4:+80517515 | Msa0998980:CDS |
| AGGTGTTCTTGCTAAGTCTA+AGG | 0.333707 | 6_4:+80514643 | Msa0998980:CDS |
| TTCTATTCTCAAGCTTCTTA+GGG | 0.334209 | 6_4:+80519854 | Msa0998980:three_prime_UTR |
| ACCCTAACACCGTTCTTTCA+TGG | 0.342417 | 6_4:+80514468 | Msa0998980:CDS |
| CGCCATGAAAGAACGGTGTT+AGG | 0.353355 | 6_4:-80514470 | None:intergenic |
| TGTGCACTTCTGCTTTCTCT+TGG | 0.358291 | 6_4:+80519698 | Msa0998980:three_prime_UTR |
| TACAACAATGTCTCGTTCAT+TGG | 0.364319 | 6_4:+80514361 | Msa0998980:exon |
| GGAGGAAGTACCTATCCTTT+TGG | 0.369437 | 6_4:+80517842 | Msa0998980:CDS |
| TTTAAAGAAAGGGGAACTTC+AGG | 0.373529 | 6_4:+80517471 | Msa0998980:CDS |
| ACCGTTCTTTCATGGCGTTC+TGG | 0.373976 | 6_4:+80514476 | Msa0998980:CDS |
| CCCACTCTCTTTATGTGGAT+GGG | 0.377962 | 6_4:+80519144 | Msa0998980:CDS |
| GCCCACTCTCTTTATGTGGA+TGG | 0.378552 | 6_4:+80519143 | Msa0998980:CDS |
| AGAAGAGTGCACAGCAGATA+TGG | 0.383434 | 6_4:+80519439 | Msa0998980:CDS |
| ACAAACCTCTAAGCAAATAC+TGG | 0.388032 | 6_4:-80514699 | None:intergenic |
| ACTTCTGCTTTCTCTTGGTC+TGG | 0.389426 | 6_4:+80519703 | Msa0998980:three_prime_UTR |
| TGAATCAAAATCTGATTTGA+AGG | 0.400506 | 6_4:+80519469 | Msa0998980:CDS |
| TGGACAAGATACCTGCTTCT+TGG | 0.403568 | 6_4:-80517659 | None:intergenic |
| AAAGGGGAACTTCAGGTTGC+TGG | 0.405808 | 6_4:+80517478 | Msa0998980:CDS |
| AGGATAGGTACTTCCTCCTC+AGG | 0.427749 | 6_4:-80517837 | None:intergenic |
| TGTTGTCCCTCAGTAGGCTT+AGG | 0.430168 | 6_4:-80519284 | None:intergenic |
| TTGAAGATGCTAAGTTGTAC+AGG | 0.433138 | 6_4:+80519345 | Msa0998980:CDS |
| AGTGCACAAATCTTTGTCAT+TGG | 0.433416 | 6_4:-80519683 | None:intergenic |
| TGTCCCTTCTTTAGAAATAA+CGG | 0.435309 | 6_4:-80517889 | None:intergenic |
| TCAATCATGCTGATAGTGTA+AGG | 0.442974 | 6_4:-80517589 | None:intergenic |
| AAGGATTTGAATGCGGCGTT+TGG | 0.443098 | 6_4:+80514662 | Msa0998980:CDS |
| CAAAAGCAAACAATTTCGTC+TGG | 0.443371 | 6_4:+80519260 | Msa0998980:CDS |
| GTTCTTTGGGGCAATGGTGC+AGG | 0.445854 | 6_4:-80519203 | None:intergenic |
| TCTTGCCCACTCTCTTTATG+TGG | 0.447874 | 6_4:+80519139 | Msa0998980:CDS |
| GCAACCGTTATTTCTAAAGA+AGG | 0.452079 | 6_4:+80517885 | Msa0998980:CDS |
| TCAGAAGTTCTTTGGGGCAA+TGG | 0.457008 | 6_4:-80519209 | None:intergenic |
| CCACTCTCTTTATGTGGATG+GGG | 0.478255 | 6_4:+80519145 | Msa0998980:CDS |
| GTGCACTCTTCTTCAGATAG+TGG | 0.490526 | 6_4:-80519428 | None:intergenic |
| GCAGCAGCACGCACCCTCAA+TGG | 0.492315 | 6_4:-80517813 | None:intergenic |
| TTTGGTTGTTGTCCCTCAGT+AGG | 0.497330 | 6_4:-80519290 | None:intergenic |
| GGAGGTGCTGTTTGGATCAA+CGG | 0.498600 | 6_4:-80517638 | None:intergenic |
| AGTGTAAGGGCGCTTAGTCT+CGG | 0.500797 | 6_4:-80517575 | None:intergenic |
| CAGGTAAGTCCTGAAAATCA+TGG | 0.501651 | 6_4:-80519888 | None:intergenic |
| TGAAGTTTATCATTCAGCTC+AGG | 0.508925 | 6_4:-80519239 | None:intergenic |
| ATTGGAGCCTGGTCTGTACA+AGG | 0.509232 | 6_4:+80519070 | Msa0998980:CDS |
| GCCATGAAAGAACGGTGTTA+GGG | 0.509375 | 6_4:-80514469 | None:intergenic |
| TGTTTGGATCAACGGCGAAA+TGG | 0.514596 | 6_4:-80517630 | None:intergenic |
| GTGTAAGGGCGCTTAGTCTC+GGG | 0.522577 | 6_4:-80517574 | None:intergenic |
| ACAAGATACCTGCTTCTTGG+AGG | 0.523348 | 6_4:-80517656 | None:intergenic |
| GCGTGCTGCTGCCCCTGAGG+AGG | 0.526167 | 6_4:+80517824 | Msa0998980:CDS |
| TATAAAACGGTGTCCATTGA+GGG | 0.527203 | 6_4:+80517800 | Msa0998980:CDS |
| AAACAGCACCTCCAAGAAGC+AGG | 0.539561 | 6_4:+80517648 | Msa0998980:CDS |
| TGAAGTGTTGCAGTCACATA+CGG | 0.542659 | 6_4:+80514601 | Msa0998980:CDS |
| CTATAAAACGGTGTCCATTG+AGG | 0.544975 | 6_4:+80517799 | Msa0998980:CDS |
| TTCATACAAAGTAACAGAAG+TGG | 0.552956 | 6_4:-80519971 | None:intergenic |
| AGAAGCACTACCCTATAAAA+CGG | 0.553845 | 6_4:+80517787 | Msa0998980:CDS |
| AAAAGTCTTGTGCATTACAA+TGG | 0.555238 | 6_4:-80517548 | None:intergenic |
| AATGCTGTCTAGTCAGTTCA+GGG | 0.557997 | 6_4:+80517516 | Msa0998980:CDS |
| GCTTGTGCCACTCACTCTTG+TGG | 0.558268 | 6_4:-80519373 | None:intergenic |
| CGTTCATTGGTTCAACCAGT+AGG | 0.559659 | 6_4:+80514374 | Msa0998980:CDS |
| CAACCGTTATTTCTAAAGAA+GGG | 0.568663 | 6_4:+80517886 | Msa0998980:CDS |
| GCATGATTGAACGCCTCATG+AGG | 0.570502 | 6_4:+80517602 | Msa0998980:CDS |
| GGAAAAGCTGAGCGAGTGGA+AGG | 0.571341 | 6_4:+80517863 | Msa0998980:CDS |
| CCCCATCCACATAAAGAGAG+TGG | 0.574291 | 6_4:-80519145 | None:intergenic |
| GGATAGGTACTTCCTCCTCA+GGG | 0.584943 | 6_4:-80517836 | None:intergenic |
| TATGCTTAATCAAGTCATTG+TGG | 0.588331 | 6_4:+80519772 | Msa0998980:three_prime_UTR |
| TTCAGGTTGCTGGCAAAGAG+AGG | 0.590857 | 6_4:+80517488 | Msa0998980:CDS |
| GTTTATACGAATGTTTCGAA+AGG | 0.596420 | 6_4:+80514623 | Msa0998980:CDS |
| GCCAGAACGCCATGAAAGAA+CGG | 0.601410 | 6_4:-80514477 | None:intergenic |
| AGTCTTGTGCATTACAATGG+TGG | 0.608471 | 6_4:-80517545 | None:intergenic |
| GGTGCGTGCTGCTGCCCCTG+AGG | 0.610614 | 6_4:+80517821 | Msa0998980:CDS |
| CCCATCCACATAAAGAGAGT+GGG | 0.610890 | 6_4:-80519144 | None:intergenic |
| TCAGGTTGCTGGCAAAGAGA+GGG | 0.612205 | 6_4:+80517489 | Msa0998980:CDS |
| TCTATTCTCAAGCTTCTTAG+GGG | 0.614896 | 6_4:+80519855 | Msa0998980:three_prime_UTR |
| CAATCATGCTGATAGTGTAA+GGG | 0.615053 | 6_4:-80517588 | None:intergenic |
| TGAAGATGCTAAGTTGTACA+GGG | 0.615157 | 6_4:+80519346 | Msa0998980:CDS |
| TTCGTTATGAATAAGATGCA+CGG | 0.618498 | 6_4:+80519104 | Msa0998980:CDS |
| TGACAATCCTTGTACAGACC+AGG | 0.622830 | 6_4:-80519077 | None:intergenic |
| CACTCTTCTTCAGATAGTGG+AGG | 0.623792 | 6_4:-80519425 | None:intergenic |
| CGAAATGGATATCCCTCATG+AGG | 0.631953 | 6_4:-80517615 | None:intergenic |
| GGGAACACCACAAGAGTGAG+TGG | 0.646994 | 6_4:+80519366 | Msa0998980:CDS |
| TGTGGATGGGGATACTCATG+TGG | 0.649096 | 6_4:+80519157 | Msa0998980:CDS |
| ACAGATTCAGAAGTTCTTTG+GGG | 0.650481 | 6_4:-80519215 | None:intergenic |
| CATGATTGAACGCCTCATGA+GGG | 0.655277 | 6_4:+80517603 | Msa0998980:CDS |
| GTCTGGACCTAAGCCTACTG+AGG | 0.658281 | 6_4:+80519277 | Msa0998980:CDS |
| TCTGGACCTAAGCCTACTGA+GGG | 0.681737 | 6_4:+80519278 | Msa0998980:CDS |
| ACAATATGAAGCGTAAAACG+AGG | 0.684743 | 6_4:+80519396 | Msa0998980:CDS |
| TAAGTCTAAGGATTTGAATG+CGG | 0.687944 | 6_4:+80514655 | Msa0998980:CDS |
| GTTGTTCGTCTCAAGAAACA+CGG | 0.697669 | 6_4:+80514422 | Msa0998980:CDS |
| GATAGGTACTTCCTCCTCAG+GGG | 0.704780 | 6_4:-80517835 | None:intergenic |
| TGTGGATTACAATGATCACG+AGG | 0.775410 | 6_4:+80519175 | Msa0998980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTAAGAAAATGATAAA+TGG | + | chr6_4:80515248-80515267 | Msa0998980:intron | 10.0% |
| !! | ATTATTTATAATTAACAACA+GGG | - | chr6_4:80518931-80518950 | None:intergenic | 10.0% |
| !!! | TTAACAACTTTTAATTATTA+AGG | + | chr6_4:80519915-80519934 | Msa0998980:three_prime_UTR | 10.0% |
| !! | ATGATAATCACAAAAAATTA+GGG | - | chr6_4:80514521-80514540 | None:intergenic | 15.0% |
| !! | AGCATAAATTACATAAATAA+GGG | - | chr6_4:80515597-80515616 | None:intergenic | 15.0% |
| !! | AAGCATAAATTACATAAATA+AGG | - | chr6_4:80515598-80515617 | None:intergenic | 15.0% |
| !!! | TTCTTTTTTGATGAATAAAA+AGG | - | chr6_4:80516710-80516729 | None:intergenic | 15.0% |
| !!! | TTGTGATTTTTTTTTTTTGT+TGG | + | chr6_4:80516737-80516756 | Msa0998980:intron | 15.0% |
| !!! | AATAACTAATTTTGAACTTT+TGG | + | chr6_4:80517401-80517420 | Msa0998980:intron | 15.0% |
| !! | GATTATTTATAATTAACAAC+AGG | - | chr6_4:80518932-80518951 | None:intergenic | 15.0% |
| !! | CATGATAATCACAAAAAATT+AGG | - | chr6_4:80514522-80514541 | None:intergenic | 20.0% |
| !!! | GATTAATTGAGTTAATTTGA+TGG | + | chr6_4:80514543-80514562 | Msa0998980:intron | 20.0% |
| !!! | AGTTAATTTGATGGATTAAT+CGG | + | chr6_4:80514552-80514571 | Msa0998980:intron | 20.0% |
| !!! | TTGACGTTTTTAATAAGTTT+AGG | + | chr6_4:80515138-80515157 | Msa0998980:intron | 20.0% |
| !!! | TTTTAATAAGTTTAGGTGTT+AGG | + | chr6_4:80515145-80515164 | Msa0998980:intron | 20.0% |
| !! | TTTAATAAGTTTAGGTGTTA+GGG | + | chr6_4:80515146-80515165 | Msa0998980:intron | 20.0% |
| !!! | ACAAAATTTTCAATAAGCTT+AGG | + | chr6_4:80515381-80515400 | Msa0998980:intron | 20.0% |
| !!! | GTTTTAGGAAATGAATTATT+GGG | + | chr6_4:80515403-80515422 | Msa0998980:intron | 20.0% |
| !! | TTTATGTAATTTATGCTTAG+AGG | + | chr6_4:80515600-80515619 | Msa0998980:intron | 20.0% |
| !!! | TAATTCATTTTCTAAGCTTA+TGG | - | chr6_4:80516087-80516106 | None:intergenic | 20.0% |
| !!! | AGGTTTTTAGTTTCTATTTT+GGG | + | chr6_4:80516668-80516687 | Msa0998980:intron | 20.0% |
| !!! | AAAAAGTTGAAAAAAGTGTA+TGG | - | chr6_4:80516956-80516975 | None:intergenic | 20.0% |
| !!! | TTTTTCAACTTTTTTGTAAC+AGG | + | chr6_4:80516962-80516981 | Msa0998980:intron | 20.0% |
| !!! | AAGTTATAAGTTGGTTATAA+GGG | - | chr6_4:80517289-80517308 | None:intergenic | 20.0% |
| !! | ATTAGTTATTATGCATAAAC+TGG | - | chr6_4:80517391-80517410 | None:intergenic | 20.0% |
| !!! | ATAGAATTATTTAGAATGAC+TGG | - | chr6_4:80517682-80517701 | None:intergenic | 20.0% |
| !! | ACTAAATAATAATCTAATCC+TGG | - | chr6_4:80518256-80518275 | None:intergenic | 20.0% |
| !! | AAAAATAAACTGGAAATACA+AGG | + | chr6_4:80518338-80518357 | Msa0998980:intron | 20.0% |
| !! | TCATGAAACATTTATAAACA+TGG | - | chr6_4:80518877-80518896 | None:intergenic | 20.0% |
| !! | AACAGTAATAACATTTGAAA+TGG | - | chr6_4:80518905-80518924 | None:intergenic | 20.0% |
| !! | AATTGTTCTGATTTCTAATT+TGG | + | chr6_4:80519033-80519052 | Msa0998980:intron | 20.0% |
| !!! | ATCTCTAAAACACTTTTTTT+TGG | - | chr6_4:80519539-80519558 | None:intergenic | 20.0% |
| !! | ATTAAAAGTTGTTAAATTGC+AGG | - | chr6_4:80519910-80519929 | None:intergenic | 20.0% |
| !!! | TTTTATTGAGCTCTTTGTTT+CGG | - | chr6_4:80514302-80514321 | None:intergenic | 25.0% |
| ! | TTCTTAAACTATTAACGTGT+TGG | - | chr6_4:80514777-80514796 | None:intergenic | 25.0% |
| !! | TTTCAATAAGCTTAGGTTTT+AGG | + | chr6_4:80515388-80515407 | Msa0998980:intron | 25.0% |
| !!! | GGTTTTAGGAAATGAATTAT+TGG | + | chr6_4:80515402-80515421 | Msa0998980:intron | 25.0% |
| !!! | AGAGACTTTTTAATTAGCTT+AGG | + | chr6_4:80515811-80515830 | Msa0998980:intron | 25.0% |
| ! | TGGCGTATGATTAAATTATT+TGG | + | chr6_4:80515984-80516003 | Msa0998980:intron | 25.0% |
| ! | TTATTTGGATTTATCTACTG+AGG | + | chr6_4:80515999-80516018 | Msa0998980:intron | 25.0% |
| ! | TCATAAACCCTCAAATAATA+AGG | - | chr6_4:80516581-80516600 | None:intergenic | 25.0% |
| !!! | GAGGTTTTTAGTTTCTATTT+TGG | + | chr6_4:80516667-80516686 | Msa0998980:intron | 25.0% |
| !!! | GGTTTTTAGTTTCTATTTTG+GGG | + | chr6_4:80516669-80516688 | Msa0998980:intron | 25.0% |
| ! | TGATGAATAAAAAGGAGTTA+GGG | - | chr6_4:80516702-80516721 | None:intergenic | 25.0% |
| ! | TTGATGAATAAAAAGGAGTT+AGG | - | chr6_4:80516703-80516722 | None:intergenic | 25.0% |
| ! | AAAAAATGTTTATTCGCAGT+TGG | + | chr6_4:80516761-80516780 | Msa0998980:intron | 25.0% |
| !!! | TTTTTTGTAACAGGTTATTC+AGG | + | chr6_4:80516971-80516990 | Msa0998980:intron | 25.0% |
| !!! | CAAGTTATAAGTTGGTTATA+AGG | - | chr6_4:80517290-80517309 | None:intergenic | 25.0% |
| !!! | TAATTTTGAACTTTTGGTTG+AGG | + | chr6_4:80517407-80517426 | Msa0998980:intron | 25.0% |
| !!! | TGTTGCAGATTTTAAAGAAA+GGG | + | chr6_4:80517461-80517480 | Msa0998980:intron | 25.0% |
| ! | GATTATGAAAGTTGTATTAC+AGG | + | chr6_4:80517740-80517759 | Msa0998980:intron | 25.0% |
| !! | ATTTTATTCTCGGTAACATT+GGG | + | chr6_4:80517967-80517986 | Msa0998980:intron | 25.0% |
| !! | ATTTTATCCAACACAAAAAC+AGG | + | chr6_4:80518110-80518129 | Msa0998980:intron | 25.0% |
| ! | TTTGTCTGTTGGATAAAATT+TGG | - | chr6_4:80518197-80518216 | None:intergenic | 25.0% |
| ! | ACAAACAAACATTCAAAAGA+CGG | - | chr6_4:80518226-80518245 | None:intergenic | 25.0% |
| !! | AATACAAGGTGTATTTTATC+TGG | + | chr6_4:80518352-80518371 | Msa0998980:intron | 25.0% |
| !!! | CTGTTGTTTTTGATTTTTCT+TGG | + | chr6_4:80518475-80518494 | Msa0998980:intron | 25.0% |
| ! | ATAACCCATAAAAAAGCTAA+TGG | + | chr6_4:80518846-80518865 | Msa0998980:intron | 25.0% |
| ! | TAACCCATAAAAAAGCTAAT+GGG | + | chr6_4:80518847-80518866 | Msa0998980:intron | 25.0% |
| ! | TATATCTGCATTTACGTATA+GGG | + | chr6_4:80518973-80518992 | Msa0998980:intron | 25.0% |
| !! | TGAATCAAAATCTGATTTGA+AGG | + | chr6_4:80519469-80519488 | Msa0998980:CDS | 25.0% |
| !! | TAATTTGATGGATTAATCGG+TGG | + | chr6_4:80514555-80514574 | Msa0998980:intron | 30.0% |
| GTTTATACGAATGTTTCGAA+AGG | + | chr6_4:80514623-80514642 | Msa0998980:CDS | 30.0% | |
| TAAGTCTAAGGATTTGAATG+CGG | + | chr6_4:80514655-80514674 | Msa0998980:CDS | 30.0% | |
| !! | ATCAAAAGTGTTGGTACTAT+AGG | + | chr6_4:80515343-80515362 | Msa0998980:intron | 30.0% |
| !! | TCAAAAGTGTTGGTACTATA+GGG | + | chr6_4:80515344-80515363 | Msa0998980:intron | 30.0% |
| ! | TGACTAGCAATTTCTTCTTT+TGG | - | chr6_4:80515467-80515486 | None:intergenic | 30.0% |
| TGTAATTTATGCTTAGAGGT+TGG | + | chr6_4:80515604-80515623 | Msa0998980:intron | 30.0% | |
| TAACATTGAATCGATCAAGT+AGG | - | chr6_4:80515635-80515654 | None:intergenic | 30.0% | |
| TAATTCATTTCCTGAGCTTA+TGG | - | chr6_4:80516186-80516205 | None:intergenic | 30.0% | |
| TACAGAAATAATGCCAAAAG+TGG | + | chr6_4:80516307-80516326 | Msa0998980:intron | 30.0% | |
| ATTCAGTTAGCATTATCACA+TGG | + | chr6_4:80516356-80516375 | Msa0998980:intron | 30.0% | |
| TTATATCATAAACCTACCCA+TGG | - | chr6_4:80516463-80516482 | None:intergenic | 30.0% | |
| !! | CATGGAAGAACTTTAAAATG+GGG | - | chr6_4:80516505-80516524 | None:intergenic | 30.0% |
| !! | GCATGGAAGAACTTTAAAAT+GGG | - | chr6_4:80516506-80516525 | None:intergenic | 30.0% |
| ! | AGCATGGAAGAACTTTAAAA+TGG | - | chr6_4:80516507-80516526 | None:intergenic | 30.0% |
| TAGCTCAACCTTATTATTTG+AGG | + | chr6_4:80516570-80516589 | Msa0998980:intron | 30.0% | |
| AGCTCAACCTTATTATTTGA+GGG | + | chr6_4:80516571-80516590 | Msa0998980:intron | 30.0% | |
| ACTATCACAATCAACTAGTA+AGG | - | chr6_4:80516634-80516653 | None:intergenic | 30.0% | |
| GATGAATAAAAAGGAGTTAG+GGG | - | chr6_4:80516701-80516720 | None:intergenic | 30.0% | |
| AACACCACATACAACTTATA+TGG | + | chr6_4:80517004-80517023 | Msa0998980:intron | 30.0% | |
| ACTTCCATATAAGTTGTATG+TGG | - | chr6_4:80517011-80517030 | None:intergenic | 30.0% | |
| ! | ATAACCAACTTATAACTTGC+AGG | + | chr6_4:80517291-80517310 | Msa0998980:intron | 30.0% |
| !! | CTGTTGCAGATTTTAAAGAA+AGG | + | chr6_4:80517460-80517479 | Msa0998980:intron | 30.0% |
| !! | GTTGCAGATTTTAAAGAAAG+GGG | + | chr6_4:80517462-80517481 | Msa0998980:intron | 30.0% |
| ! | AAAAGTCTTGTGCATTACAA+TGG | - | chr6_4:80517551-80517570 | None:intergenic | 30.0% |
| !! | CAACCGTTATTTCTAAAGAA+GGG | + | chr6_4:80517886-80517905 | Msa0998980:CDS | 30.0% |
| ! | TGTCCCTTCTTTAGAAATAA+CGG | - | chr6_4:80517892-80517911 | None:intergenic | 30.0% |
| ! | TCATGGTTCCATTTTATTCT+CGG | + | chr6_4:80517957-80517976 | Msa0998980:intron | 30.0% |
| CAATGTTACCGAGAATAAAA+TGG | - | chr6_4:80517968-80517987 | None:intergenic | 30.0% | |
| ! | CATTTTATTCTCGGTAACAT+TGG | + | chr6_4:80517966-80517985 | Msa0998980:intron | 30.0% |
| !! | AGAAGCATTGTTATAGTTGA+CGG | + | chr6_4:80518001-80518020 | Msa0998980:intron | 30.0% |
| TCAACATTTGTGATAGTTAC+AGG | + | chr6_4:80518141-80518160 | Msa0998980:intron | 30.0% | |
| ! | TTTTATCCAACAGACAAAAC+AGG | + | chr6_4:80518199-80518218 | Msa0998980:intron | 30.0% |
| TGTTTGTTTGTGATAATTCC+AGG | + | chr6_4:80518235-80518254 | Msa0998980:intron | 30.0% | |
| CAAACTTGTATACAATAACC+AGG | - | chr6_4:80518301-80518320 | None:intergenic | 30.0% | |
| GCTCATTGGTAAAAATAAAC+TGG | + | chr6_4:80518328-80518347 | Msa0998980:intron | 30.0% | |
| !! | TGTATTTTATCTGGTTTCTC+AGG | + | chr6_4:80518361-80518380 | Msa0998980:intron | 30.0% |
| !! | GTATTTTATCTGGTTTCTCA+GGG | + | chr6_4:80518362-80518381 | Msa0998980:intron | 30.0% |
| !!! | GTTTTTGATTTTTCTTGGCA+TGG | + | chr6_4:80518480-80518499 | Msa0998980:intron | 30.0% |
| TTTGTTAAGCAGATTGAATG+TGG | - | chr6_4:80518751-80518770 | None:intergenic | 30.0% | |
| GCAGAATTCAGATTCATTTA+TGG | + | chr6_4:80518791-80518810 | Msa0998980:intron | 30.0% | |
| ! | GATTCATTTATGGACTTTTC+TGG | + | chr6_4:80518801-80518820 | Msa0998980:intron | 30.0% |
| GATATACAAGACACAACTTA+TGG | - | chr6_4:80518959-80518978 | None:intergenic | 30.0% | |
| GTATATCTGCATTTACGTAT+AGG | + | chr6_4:80518972-80518991 | Msa0998980:intron | 30.0% | |
| TTGATTCTGCTAAAATTTCG+AGG | + | chr6_4:80519008-80519027 | Msa0998980:intron | 30.0% | |
| TTCGTTATGAATAAGATGCA+CGG | + | chr6_4:80519104-80519123 | Msa0998980:CDS | 30.0% | |
| !!! | AAGTGTTTTAGAGATGTTAC+TGG | + | chr6_4:80519544-80519563 | Msa0998980:three_prime_UTR | 30.0% |
| ! | ATACATGTGCCTATTTTGTT+AGG | + | chr6_4:80519595-80519614 | Msa0998980:three_prime_UTR | 30.0% |
| TATGCTTAATCAAGTCATTG+TGG | + | chr6_4:80519772-80519791 | Msa0998980:three_prime_UTR | 30.0% | |
| TTTCTATTCTCAAGCTTCTT+AGG | + | chr6_4:80519853-80519872 | Msa0998980:three_prime_UTR | 30.0% | |
| TTCTATTCTCAAGCTTCTTA+GGG | + | chr6_4:80519854-80519873 | Msa0998980:three_prime_UTR | 30.0% | |
| ! | TTCAAGTATCCATGATTTTC+AGG | + | chr6_4:80519879-80519898 | Msa0998980:three_prime_UTR | 30.0% |
| TACAACAATGTCTCGTTCAT+TGG | + | chr6_4:80514361-80514380 | Msa0998980:exon | 35.0% | |
| TCATTCCAGTATTTGCTTAG+AGG | + | chr6_4:80514694-80514713 | Msa0998980:CDS | 35.0% | |
| ACAAACCTCTAAGCAAATAC+TGG | - | chr6_4:80514702-80514721 | None:intergenic | 35.0% | |
| AATTATATATGCCAGTGTCG+TGG | + | chr6_4:80514815-80514834 | Msa0998980:intron | 35.0% | |
| GGTGTTTACAGAGAAGTTAA+AGG | - | chr6_4:80515937-80515956 | None:intergenic | 35.0% | |
| TACAGAAATCATGCCAAAAG+TGG | + | chr6_4:80516109-80516128 | Msa0998980:intron | 35.0% | |
| TACAGAAATCATGCCAAAAG+TGG | + | chr6_4:80516109-80516128 | Msa0998980:intron | 35.0% | |
| TATCACATGTTCATAAGCTC+AGG | + | chr6_4:80516272-80516291 | Msa0998980:intron | 35.0% | |
| ATCAGACTTTGTCCAATAGT+TGG | - | chr6_4:80516387-80516406 | None:intergenic | 35.0% | |
| TAAAATGGGGACTTAAGTCA+CGG | - | chr6_4:80516492-80516511 | None:intergenic | 35.0% | |
| GATAGTACTCTCTTTCTAAG+AGG | + | chr6_4:80516648-80516667 | Msa0998980:intron | 35.0% | |
| AGCTATAATCAGAGACAATG+TGG | - | chr6_4:80517220-80517239 | None:intergenic | 35.0% | |
| AGTTCCTGCAAGTTATAAGT+TGG | - | chr6_4:80517298-80517317 | None:intergenic | 35.0% | |
| TTTAAAGAAAGGGGAACTTC+AGG | + | chr6_4:80517471-80517490 | Msa0998980:CDS | 35.0% | |
| ! | CAATCATGCTGATAGTGTAA+GGG | - | chr6_4:80517591-80517610 | None:intergenic | 35.0% |
| ! | TCAATCATGCTGATAGTGTA+AGG | - | chr6_4:80517592-80517611 | None:intergenic | 35.0% |
| GAAAGTTGTATTACAGGCTT+TGG | + | chr6_4:80517746-80517765 | Msa0998980:intron | 35.0% | |
| !! | AGAAGCACTACCCTATAAAA+CGG | + | chr6_4:80517787-80517806 | Msa0998980:CDS | 35.0% |
| ! | TCAATGGACACCGTTTTATA+GGG | - | chr6_4:80517800-80517819 | None:intergenic | 35.0% |
| TATAAAACGGTGTCCATTGA+GGG | + | chr6_4:80517800-80517819 | Msa0998980:CDS | 35.0% | |
| !! | GCAACCGTTATTTCTAAAGA+AGG | + | chr6_4:80517885-80517904 | Msa0998980:CDS | 35.0% |
| ! | TGTGTTGCTCAGTTATTTCA+TGG | + | chr6_4:80517940-80517959 | Msa0998980:intron | 35.0% |
| !!! | AACATGACCTGTTTTTGTGT+TGG | - | chr6_4:80518120-80518139 | None:intergenic | 35.0% |
| ! | TTCTTTTATCGCAGTTTACC+TGG | + | chr6_4:80518280-80518299 | Msa0998980:intron | 35.0% |
| AAGTTTGAGAAGTTGCTCAT+TGG | + | chr6_4:80518314-80518333 | Msa0998980:intron | 35.0% | |
| GTTTGGGTAGAATTTGATCA+TGG | + | chr6_4:80518410-80518429 | Msa0998980:intron | 35.0% | |
| ! | TCAGGTGCAATAGTTTTTCT+TGG | + | chr6_4:80518451-80518470 | Msa0998980:intron | 35.0% |
| ! | CAGGTGCAATAGTTTTTCTT+GGG | + | chr6_4:80518452-80518471 | Msa0998980:intron | 35.0% |
| !!! | TAGTTTTGATGCCTTGTACT+TGG | + | chr6_4:80518585-80518604 | Msa0998980:intron | 35.0% |
| AACAGCGGCAAATGAATATT+TGG | - | chr6_4:80518682-80518701 | None:intergenic | 35.0% | |
| ! | CATGCATTTTCTGTAAGTTG+TGG | + | chr6_4:80518725-80518744 | Msa0998980:intron | 35.0% |
| AATGAATCTGAATTCTGCAC+AGG | - | chr6_4:80518789-80518808 | None:intergenic | 35.0% | |
| !! | GGTTATTTTGTTGAGATGAG+GGG | - | chr6_4:80518832-80518851 | None:intergenic | 35.0% |
| !! | GGGTTATTTTGTTGAGATGA+GGG | - | chr6_4:80518833-80518852 | None:intergenic | 35.0% |
| !! | TGGGTTATTTTGTTGAGATG+AGG | - | chr6_4:80518834-80518853 | None:intergenic | 35.0% |
| !!! | CCTCCCATTAGCTTTTTTAT+GGG | - | chr6_4:80518853-80518872 | None:intergenic | 35.0% |
| !!! | ACCTCCCATTAGCTTTTTTA+TGG | - | chr6_4:80518854-80518873 | None:intergenic | 35.0% |
| ACAAGACACAACTTATGGAA+AGG | - | chr6_4:80518954-80518973 | None:intergenic | 35.0% | |
| CTGATTTCTAATTTGGTTGC+AGG | + | chr6_4:80519040-80519059 | Msa0998980:intron | 35.0% | |
| ! | TTGGTTGCAGGTTTTTGAAT+TGG | + | chr6_4:80519052-80519071 | Msa0998980:intron | 35.0% |
| ACAGATTCAGAAGTTCTTTG+GGG | - | chr6_4:80519218-80519237 | None:intergenic | 35.0% | |
| CACAGATTCAGAAGTTCTTT+GGG | - | chr6_4:80519219-80519238 | None:intergenic | 35.0% | |
| TGAAGTTTATCATTCAGCTC+AGG | - | chr6_4:80519242-80519261 | None:intergenic | 35.0% | |
| TTGAAGATGCTAAGTTGTAC+AGG | + | chr6_4:80519345-80519364 | Msa0998980:CDS | 35.0% | |
| TGAAGATGCTAAGTTGTACA+GGG | + | chr6_4:80519346-80519365 | Msa0998980:CDS | 35.0% | |
| ACAATATGAAGCGTAAAACG+AGG | + | chr6_4:80519396-80519415 | Msa0998980:CDS | 35.0% | |
| TCAGACTGTCCTAACAAAAT+AGG | - | chr6_4:80519607-80519626 | None:intergenic | 35.0% | |
| AGTGCACAAATCTTTGTCAT+TGG | - | chr6_4:80519686-80519705 | None:intergenic | 35.0% | |
| TCTATTCTCAAGCTTCTTAG+GGG | + | chr6_4:80519855-80519874 | Msa0998980:three_prime_UTR | 35.0% | |
| ! | GGATTTCTTTTGCACTTGTA+GGG | - | chr6_4:80519953-80519972 | None:intergenic | 35.0% |
| ! | TGGATTTCTTTTGCACTTGT+AGG | - | chr6_4:80519954-80519973 | None:intergenic | 35.0% |
| !! | GTTAATCGCTTTTGACCTAC+TGG | - | chr6_4:80514392-80514411 | None:intergenic | 40.0% |
| GTTGTTCGTCTCAAGAAACA+CGG | + | chr6_4:80514422-80514441 | Msa0998980:CDS | 40.0% | |
| !!! | TCGGTGGTTTTGTAGTGAAA+AGG | + | chr6_4:80514571-80514590 | Msa0998980:intron | 40.0% |
| !! | TGAAGTGTTGCAGTCACATA+CGG | + | chr6_4:80514601-80514620 | Msa0998980:CDS | 40.0% |
| AGGTGTTCTTGCTAAGTCTA+AGG | + | chr6_4:80514643-80514662 | Msa0998980:CDS | 40.0% | |
| ! | ACCTTTTCGATCAGTAGTGT+CGG | + | chr6_4:80514865-80514884 | Msa0998980:intron | 40.0% |
| ACGAAACACTGACACAAACA+CGG | + | chr6_4:80514945-80514964 | Msa0998980:intron | 40.0% | |
| ACAAACACGGAAACCAAAAC+AGG | + | chr6_4:80514958-80514977 | Msa0998980:intron | 40.0% | |
| CAAACACGGAAACCAAAACA+GGG | + | chr6_4:80514959-80514978 | Msa0998980:intron | 40.0% | |
| ! | CTAGTATCAATGCCCTGTTT+TGG | - | chr6_4:80514974-80514993 | None:intergenic | 40.0% |
| TGTTGGACACTAACATGTGT+AGG | + | chr6_4:80515055-80515074 | Msa0998980:intron | 40.0% | |
| TGTCGAACATTGACATGTGT+AGG | + | chr6_4:80515302-80515321 | Msa0998980:intron | 40.0% | |
| ! | ACGCATTCGATCAAAAGTGT+TGG | + | chr6_4:80515334-80515353 | Msa0998980:intron | 40.0% |
| AGCCATGAAACACTGAAACT+TGG | + | chr6_4:80515666-80515685 | Msa0998980:intron | 40.0% | |
| TGCCAAGTTTCAGTGTTTCA+TGG | - | chr6_4:80515671-80515690 | None:intergenic | 40.0% | |
| AATCACATGTGTCAATGTCG+TGG | + | chr6_4:80515728-80515747 | Msa0998980:intron | 40.0% | |
| TAAACACCTCTTAAGCACTC+AGG | + | chr6_4:80515949-80515968 | Msa0998980:intron | 40.0% | |
| TTAAGCACTCAGGCTTAGTT+TGG | + | chr6_4:80515959-80515978 | Msa0998980:intron | 40.0% | |
| TAAGCACTCAGGCTTAGTTT+GGG | + | chr6_4:80515960-80515979 | Msa0998980:intron | 40.0% | |
| TATCACATGTCCATAAGCTC+AGG | + | chr6_4:80516173-80516192 | Msa0998980:intron | 40.0% | |
| !! | GCTTATAACTCAGCCACTTT+TGG | - | chr6_4:80516224-80516243 | None:intergenic | 40.0% |
| ! | GAGTTATGGGCTATACATCA+AGG | + | chr6_4:80516332-80516351 | Msa0998980:intron | 40.0% |
| ! | CACATGGCTTTTCCAACTAT+TGG | + | chr6_4:80516372-80516391 | Msa0998980:intron | 40.0% |
| GCGATCAACTTTATTCAGCA+AGG | + | chr6_4:80516416-80516435 | Msa0998980:intron | 40.0% | |
| AAAGTTCTTCCATGCTCTTG+AGG | + | chr6_4:80516511-80516530 | Msa0998980:intron | 40.0% | |
| ! | GAATCAAGTTGCGGATTCAT+TGG | + | chr6_4:80516535-80516554 | Msa0998980:intron | 40.0% |
| TAGGTAGGGTAATGCAATCA+GGG | - | chr6_4:80516610-80516629 | None:intergenic | 40.0% | |
| TCAACTAGTAAGGCTAGGTA+GGG | - | chr6_4:80516624-80516643 | None:intergenic | 40.0% | |
| ATCAACTAGTAAGGCTAGGT+AGG | - | chr6_4:80516625-80516644 | None:intergenic | 40.0% | |
| CACAATCAACTAGTAAGGCT+AGG | - | chr6_4:80516629-80516648 | None:intergenic | 40.0% | |
| GTTTATTCGCAGTTGGCATT+AGG | + | chr6_4:80516768-80516787 | Msa0998980:intron | 40.0% | |
| ACACTCACTTAGGGCATATT+TGG | - | chr6_4:80517136-80517155 | None:intergenic | 40.0% | |
| GTTCCAAACACACTCACTTA+GGG | - | chr6_4:80517145-80517164 | None:intergenic | 40.0% | |
| TGTTCCAAACACACTCACTT+AGG | - | chr6_4:80517146-80517165 | None:intergenic | 40.0% | |
| ! | TTGGTTATAAGGGTGTGCTT+GGG | - | chr6_4:80517279-80517298 | None:intergenic | 40.0% |
| AATGCTGTCTAGTCAGTTCA+GGG | + | chr6_4:80517516-80517535 | Msa0998980:CDS | 40.0% | |
| ! | AGTCTTGTGCATTACAATGG+TGG | - | chr6_4:80517548-80517567 | None:intergenic | 40.0% |
| ! | CTCAATGGACACCGTTTTAT+AGG | - | chr6_4:80517801-80517820 | None:intergenic | 40.0% |
| CTATAAAACGGTGTCCATTG+AGG | + | chr6_4:80517799-80517818 | Msa0998980:CDS | 40.0% | |
| ! | CTCAGCTTTTCCAAAAGGAT+AGG | - | chr6_4:80517855-80517874 | None:intergenic | 40.0% |
| !!! | AGGGTTGTTTCTTGTCCTTT+TGG | + | chr6_4:80518381-80518400 | Msa0998980:intron | 40.0% |
| !!! | GGGTTGTTTCTTGTCCTTTT+GGG | + | chr6_4:80518382-80518401 | Msa0998980:intron | 40.0% |
| GGTAGAATTTGATCATGGCA+GGG | + | chr6_4:80518415-80518434 | Msa0998980:intron | 40.0% | |
| GTAGAATTTGATCATGGCAG+GGG | + | chr6_4:80518416-80518435 | Msa0998980:intron | 40.0% | |
| ! | TTGATTTTTCTTGGCATGGC+AGG | + | chr6_4:80518484-80518503 | Msa0998980:intron | 40.0% |
| CCAACTAAAACAAGGAAACC+AGG | - | chr6_4:80518545-80518564 | None:intergenic | 40.0% | |
| !!! | CCTGGTTTCCTTGTTTTAGT+TGG | + | chr6_4:80518542-80518561 | Msa0998980:intron | 40.0% |
| TAGCAGAGCCAACTAAAACA+AGG | - | chr6_4:80518553-80518572 | None:intergenic | 40.0% | |
| ! | ACAACTTGCTTCCAAGTACA+AGG | - | chr6_4:80518599-80518618 | None:intergenic | 40.0% |
| CAGAAATGATCAGCTAACAG+CGG | - | chr6_4:80518697-80518716 | None:intergenic | 40.0% | |
| CCCATAAAAAAGCTAATGGG+AGG | + | chr6_4:80518850-80518869 | Msa0998980:intron | 40.0% | |
| ! | TGTGGATTACAATGATCACG+AGG | + | chr6_4:80519175-80519194 | Msa0998980:CDS | 40.0% |
| GCACAGATTCAGAAGTTCTT+TGG | - | chr6_4:80519220-80519239 | None:intergenic | 40.0% | |
| !!! | GTGTTGCACTTGTTTTGCTT+TGG | - | chr6_4:80519311-80519330 | None:intergenic | 40.0% |
| CAGGTAAGTCCTGAAAATCA+TGG | - | chr6_4:80519891-80519910 | None:intergenic | 40.0% | |
| !! | CGTTCATTGGTTCAACCAGT+AGG | + | chr6_4:80514374-80514393 | Msa0998980:CDS | 45.0% |
| ACCCTAACACCGTTCTTTCA+TGG | + | chr6_4:80514468-80514487 | Msa0998980:CDS | 45.0% | |
| ! | GCCATGAAAGAACGGTGTTA+GGG | - | chr6_4:80514472-80514491 | None:intergenic | 45.0% |
| AAGGATTTGAATGCGGCGTT+TGG | + | chr6_4:80514662-80514681 | Msa0998980:CDS | 45.0% | |
| CGTATCAATATCCACGACAC+TGG | - | chr6_4:80514829-80514848 | None:intergenic | 45.0% | |
| GACACTACTGATCGAAAAGG+TGG | - | chr6_4:80514866-80514885 | None:intergenic | 45.0% | |
| ACCGACACTACTGATCGAAA+AGG | - | chr6_4:80514869-80514888 | None:intergenic | 45.0% | |
| ATGTGTGTGTGTGTCTGTGT+TGG | + | chr6_4:80515038-80515057 | Msa0998980:intron | 45.0% | |
| ACACCAGACATGCCTTCAAT+CGG | + | chr6_4:80515078-80515097 | Msa0998980:intron | 45.0% | |
| ATGCCTTCAATCGGACAAGT+TGG | + | chr6_4:80515087-80515106 | Msa0998980:intron | 45.0% | |
| CATTGACATGTGTAGGACAC+CGG | + | chr6_4:80515309-80515328 | Msa0998980:intron | 45.0% | |
| ! | CTTTTGATCGAATGCGTGTC+CGG | - | chr6_4:80515331-80515350 | None:intergenic | 45.0% |
| !!! | CTTTTGGCTTCCTTAACCAG+TGG | - | chr6_4:80515451-80515470 | None:intergenic | 45.0% |
| GTCCAGTGTCCTACAAATGT+CGG | - | chr6_4:80515757-80515776 | None:intergenic | 45.0% | |
| ACTAAGCCTGAGTGCTTAAG+AGG | - | chr6_4:80515958-80515977 | None:intergenic | 45.0% | |
| GCCAAAAGTGGCTGAGTTAT+AGG | + | chr6_4:80516121-80516140 | Msa0998980:intron | 45.0% | |
| !! | GCCTATAACTCAGCCACTTT+TGG | - | chr6_4:80516125-80516144 | None:intergenic | 45.0% |
| TGCCAAAAGTGGCTGAGTTA+TGG | + | chr6_4:80516120-80516139 | Msa0998980:intron | 45.0% | |
| GCCAAAAGTGGCTGAGTTAT+GGG | + | chr6_4:80516121-80516140 | Msa0998980:intron | 45.0% | |
| ! | TCTTGAGGCGAATCAAGTTG+CGG | + | chr6_4:80516526-80516545 | Msa0998980:intron | 45.0% |
| AGGTAGGGTAATGCAATCAG+GGG | - | chr6_4:80516609-80516628 | None:intergenic | 45.0% | |
| CTAGGTAGGGTAATGCAATC+AGG | - | chr6_4:80516611-80516630 | None:intergenic | 45.0% | |
| TGTAAGCACCTTAAGCACTC+AGG | + | chr6_4:80516803-80516822 | Msa0998980:intron | 45.0% | |
| AAATGCAGCCTGAGTGCTTA+AGG | - | chr6_4:80516814-80516833 | None:intergenic | 45.0% | |
| TTAAGCACTCAGGCTGCATT+TGG | + | chr6_4:80516813-80516832 | Msa0998980:intron | 45.0% | |
| TAAGCACTCAGGCTGCATTT+GGG | + | chr6_4:80516814-80516833 | Msa0998980:intron | 45.0% | |
| ATGCCCTAAGTGAGTGTGTT+TGG | + | chr6_4:80517139-80517158 | Msa0998980:intron | 45.0% | |
| ! | GTTGGTTATAAGGGTGTGCT+TGG | - | chr6_4:80517280-80517299 | None:intergenic | 45.0% |
| CAATGCTGTCTAGTCAGTTC+AGG | + | chr6_4:80517515-80517534 | Msa0998980:CDS | 45.0% | |
| CATGATTGAACGCCTCATGA+GGG | + | chr6_4:80517603-80517622 | Msa0998980:CDS | 45.0% | |
| CGAAATGGATATCCCTCATG+AGG | - | chr6_4:80517618-80517637 | None:intergenic | 45.0% | |
| TGTTTGGATCAACGGCGAAA+TGG | - | chr6_4:80517633-80517652 | None:intergenic | 45.0% | |
| ACAAGATACCTGCTTCTTGG+AGG | - | chr6_4:80517659-80517678 | None:intergenic | 45.0% | |
| TGGACAAGATACCTGCTTCT+TGG | - | chr6_4:80517662-80517681 | None:intergenic | 45.0% | |
| !! | ACAGGCTTTGGAGTTGATTC+AGG | + | chr6_4:80517758-80517777 | Msa0998980:intron | 45.0% |
| !!! | GGAGGAAGTACCTATCCTTT+TGG | + | chr6_4:80517842-80517861 | Msa0998980:CDS | 45.0% |
| ! | ACTCGCTCAGCTTTTCCAAA+AGG | - | chr6_4:80517860-80517879 | None:intergenic | 45.0% |
| !! | TTTTGGAAAAGCTGAGCGAG+TGG | + | chr6_4:80517859-80517878 | Msa0998980:CDS | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr6_4:80518041-80518060 | Msa0998980:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr6_4:80518042-80518061 | Msa0998980:intron | 45.0% |
| ! | TGTCCTTTTGGGCAAGTGTT+TGG | + | chr6_4:80518393-80518412 | Msa0998980:intron | 45.0% |
| ! | GTCCTTTTGGGCAAGTGTTT+GGG | + | chr6_4:80518394-80518413 | Msa0998980:intron | 45.0% |
| TACCCAAACACTTGCCCAAA+AGG | - | chr6_4:80518399-80518418 | None:intergenic | 45.0% | |
| GGGTAGAATTTGATCATGGC+AGG | + | chr6_4:80518414-80518433 | Msa0998980:intron | 45.0% | |
| CAGGGGTTAATCGTTTGTTC+AGG | + | chr6_4:80518433-80518452 | Msa0998980:intron | 45.0% | |
| ! | TTCTTGGCATGGCAGGTTTT+TGG | + | chr6_4:80518491-80518510 | Msa0998980:intron | 45.0% |
| ! | CAGGTTTTTGAATTGGAGCC+TGG | + | chr6_4:80519059-80519078 | Msa0998980:intron | 45.0% |
| TGACAATCCTTGTACAGACC+AGG | - | chr6_4:80519080-80519099 | None:intergenic | 45.0% | |
| TCTTGCCCACTCTCTTTATG+TGG | + | chr6_4:80519139-80519158 | Msa0998980:CDS | 45.0% | |
| CCCATCCACATAAAGAGAGT+GGG | - | chr6_4:80519147-80519166 | None:intergenic | 45.0% | |
| CCCACTCTCTTTATGTGGAT+GGG | + | chr6_4:80519144-80519163 | Msa0998980:CDS | 45.0% | |
| CCACTCTCTTTATGTGGATG+GGG | + | chr6_4:80519145-80519164 | Msa0998980:CDS | 45.0% | |
| !! | TCAGAAGTTCTTTGGGGCAA+TGG | - | chr6_4:80519212-80519231 | None:intergenic | 45.0% |
| TTTGGTTGTTGTCCCTCAGT+AGG | - | chr6_4:80519293-80519312 | None:intergenic | 45.0% | |
| ! | CACTCTTCTTCAGATAGTGG+AGG | - | chr6_4:80519428-80519447 | None:intergenic | 45.0% |
| GTGCACTCTTCTTCAGATAG+TGG | - | chr6_4:80519431-80519450 | None:intergenic | 45.0% | |
| ! | AGAAGAGTGCACAGCAGATA+TGG | + | chr6_4:80519439-80519458 | Msa0998980:CDS | 45.0% |
| TGTGCACTTCTGCTTTCTCT+TGG | + | chr6_4:80519698-80519717 | Msa0998980:three_prime_UTR | 45.0% | |
| ACTTCTGCTTTCTCTTGGTC+TGG | + | chr6_4:80519703-80519722 | Msa0998980:three_prime_UTR | 45.0% | |
| !! | AAAATATTTACAAATTATTT+CGG | + | chr6_4:80517165-80517184 | Msa0998980:intron | 5.0% |
| CGCCATGAAAGAACGGTGTT+AGG | - | chr6_4:80514473-80514492 | None:intergenic | 50.0% | |
| ACCGTTCTTTCATGGCGTTC+TGG | + | chr6_4:80514476-80514495 | Msa0998980:CDS | 50.0% | |
| GCCAGAACGCCATGAAAGAA+CGG | - | chr6_4:80514480-80514499 | None:intergenic | 50.0% | |
| ! | TGTCCGATTGAAGGCATGTC+TGG | - | chr6_4:80515084-80515103 | None:intergenic | 50.0% |
| GCACCAACTTGTCCGATTGA+AGG | - | chr6_4:80515093-80515112 | None:intergenic | 50.0% | |
| !! | TCGGACAAGTTGGTGCTACA+AGG | + | chr6_4:80515097-80515116 | Msa0998980:intron | 50.0% |
| GGTCATGTTAACTAGTGCCC+CGG | + | chr6_4:80515424-80515443 | Msa0998980:intron | 50.0% | |
| GTCATGTTAACTAGTGCCCC+GGG | + | chr6_4:80515425-80515444 | Msa0998980:intron | 50.0% | |
| AAATGTTAACCAGTGCCCCC+GGG | - | chr6_4:80515574-80515593 | None:intergenic | 50.0% | |
| GAAATGTTAACCAGTGCCCC+CGG | - | chr6_4:80515575-80515594 | None:intergenic | 50.0% | |
| CAGTGTCCTACAAATGTCGG+TGG | - | chr6_4:80515754-80515773 | None:intergenic | 50.0% | |
| CACCGACATTTGTAGGACAC+TGG | + | chr6_4:80515752-80515771 | Msa0998980:intron | 50.0% | |
| ! | GCACTGAGAGTTCTGATCGA+AGG | - | chr6_4:80515783-80515802 | None:intergenic | 50.0% |
| ! | CACTCAGGCTTAGTTTGGGT+TGG | + | chr6_4:80515964-80515983 | Msa0998980:intron | 50.0% |
| !! | GCCCATAACTCAGCCACTTT+TGG | - | chr6_4:80516323-80516342 | None:intergenic | 50.0% |
| TCATAAACCTACCCATGGCG+TGG | - | chr6_4:80516458-80516477 | None:intergenic | 50.0% | |
| ! | CTTGATTCGCCTCAAGAGCA+TGG | - | chr6_4:80516523-80516542 | None:intergenic | 50.0% |
| GCGGATTCATTGGCGAAGAT+TGG | + | chr6_4:80516545-80516564 | Msa0998980:intron | 50.0% | |
| !! | GCTGCATTTGGGTTGGCTTA+TGG | + | chr6_4:80516825-80516844 | Msa0998980:intron | 50.0% |
| ! | TAAGGGTGTGCTTGGGACTT+GGG | - | chr6_4:80517272-80517291 | None:intergenic | 50.0% |
| ! | ATAAGGGTGTGCTTGGGACT+TGG | - | chr6_4:80517273-80517292 | None:intergenic | 50.0% |
| !! | AAAGGGGAACTTCAGGTTGC+TGG | + | chr6_4:80517478-80517497 | Msa0998980:CDS | 50.0% |
| !! | TTCAGGTTGCTGGCAAAGAG+AGG | + | chr6_4:80517488-80517507 | Msa0998980:CDS | 50.0% |
| ! | TCAGGTTGCTGGCAAAGAGA+GGG | + | chr6_4:80517489-80517508 | Msa0998980:CDS | 50.0% |
| !! | AGTGTAAGGGCGCTTAGTCT+CGG | - | chr6_4:80517578-80517597 | None:intergenic | 50.0% |
| GCATGATTGAACGCCTCATG+AGG | + | chr6_4:80517602-80517621 | Msa0998980:CDS | 50.0% | |
| !! | GGAGGTGCTGTTTGGATCAA+CGG | - | chr6_4:80517641-80517660 | None:intergenic | 50.0% |
| !! | TGCTTCTTGGAGGTGCTGTT+TGG | - | chr6_4:80517649-80517668 | None:intergenic | 50.0% |
| AAACAGCACCTCCAAGAAGC+AGG | + | chr6_4:80517648-80517667 | Msa0998980:CDS | 50.0% | |
| GATAGGTACTTCCTCCTCAG+GGG | - | chr6_4:80517838-80517857 | None:intergenic | 50.0% | |
| GGATAGGTACTTCCTCCTCA+GGG | - | chr6_4:80517839-80517858 | None:intergenic | 50.0% | |
| AGGATAGGTACTTCCTCCTC+AGG | - | chr6_4:80517840-80517859 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr6_4:80518043-80518062 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr6_4:80518040-80518059 | Msa0998980:intron | 50.0% |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr6_4:80518046-80518065 | Msa0998980:intron | 50.0% | |
| ! | GACGGTCCTGTTTTGTCTGT+TGG | - | chr6_4:80518208-80518227 | None:intergenic | 50.0% |
| !!! | CATGGCAGGTTTTTGGTGTC+AGG | + | chr6_4:80518498-80518517 | Msa0998980:intron | 50.0% |
| !! | GTGTCAGGCTTTGTTAGCTC+TGG | + | chr6_4:80518513-80518532 | Msa0998980:intron | 50.0% |
| !! | TGTTAGCTCTGGTTTGTGCC+TGG | + | chr6_4:80518524-80518543 | Msa0998980:intron | 50.0% |
| ATTGGAGCCTGGTCTGTACA+AGG | + | chr6_4:80519070-80519089 | Msa0998980:CDS | 50.0% | |
| GCCCACTCTCTTTATGTGGA+TGG | + | chr6_4:80519143-80519162 | Msa0998980:CDS | 50.0% | |
| CCCCATCCACATAAAGAGAG+TGG | - | chr6_4:80519148-80519167 | None:intergenic | 50.0% | |
| TGTGGATGGGGATACTCATG+TGG | + | chr6_4:80519157-80519176 | Msa0998980:CDS | 50.0% | |
| TCTGGACCTAAGCCTACTGA+GGG | + | chr6_4:80519278-80519297 | Msa0998980:CDS | 50.0% | |
| TGTTGTCCCTCAGTAGGCTT+AGG | - | chr6_4:80519287-80519306 | None:intergenic | 50.0% | |
| TGCTTCCTTAACCAGTGCCC+CGG | + | chr6_4:80515553-80515572 | Msa0998980:intron | 55.0% | |
| AATGTTAACCAGTGCCCCCG+GGG | - | chr6_4:80515573-80515592 | None:intergenic | 55.0% | |
| TCGTGGCCACCGACATTTGT+AGG | + | chr6_4:80515745-80515764 | Msa0998980:intron | 55.0% | |
| TCTGCTACTCATCCACGCCA+TGG | + | chr6_4:80516443-80516462 | Msa0998980:intron | 55.0% | |
| CTGCTACTCATCCACGCCAT+GGG | + | chr6_4:80516444-80516463 | Msa0998980:intron | 55.0% | |
| TACTCATCCACGCCATGGGT+AGG | + | chr6_4:80516448-80516467 | Msa0998980:intron | 55.0% | |
| CACTCAGGCTGCATTTGGGT+TGG | + | chr6_4:80516818-80516837 | Msa0998980:intron | 55.0% | |
| !! | GTGTAAGGGCGCTTAGTCTC+GGG | - | chr6_4:80517577-80517596 | None:intergenic | 55.0% |
| GGAAAAGCTGAGCGAGTGGA+AGG | + | chr6_4:80517863-80517882 | Msa0998980:CDS | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr6_4:80518048-80518067 | None:intergenic | 55.0% | |
| AGTAGCCGACCCCACTTAGT+GGG | - | chr6_4:80518054-80518073 | None:intergenic | 55.0% | |
| AAGTAGCCGACCCCACTTAG+TGG | - | chr6_4:80518055-80518074 | None:intergenic | 55.0% | |
| !! | GTTCTTTGGGGCAATGGTGC+AGG | - | chr6_4:80519206-80519225 | None:intergenic | 55.0% |
| GTCTGGACCTAAGCCTACTG+AGG | + | chr6_4:80519277-80519296 | Msa0998980:CDS | 55.0% | |
| GGGAACACCACAAGAGTGAG+TGG | + | chr6_4:80519366-80519385 | Msa0998980:CDS | 55.0% | |
| ! | GCTTGTGCCACTCACTCTTG+TGG | - | chr6_4:80519376-80519395 | None:intergenic | 55.0% |
| CTTCCTTAACCAGTGGCCCG+GGG | - | chr6_4:80515444-80515463 | None:intergenic | 60.0% | |
| GCTTCCTTAACCAGTGGCCC+GGG | - | chr6_4:80515445-80515464 | None:intergenic | 60.0% | |
| GGCTTCCTTAACCAGTGGCC+CGG | - | chr6_4:80515446-80515465 | None:intergenic | 60.0% | |
| GCTTCCTTAACCAGTGCCCC+GGG | + | chr6_4:80515554-80515573 | Msa0998980:intron | 60.0% | |
| CTTCCTTAACCAGTGCCCCG+GGG | + | chr6_4:80515555-80515574 | Msa0998980:intron | 60.0% | |
| TTCCTTAACCAGTGCCCCGG+GGG | + | chr6_4:80515556-80515575 | Msa0998980:intron | 60.0% | |
| TAACTAGTGCCCCGGGCCAC+TGG | + | chr6_4:80515432-80515451 | Msa0998980:intron | 65.0% | |
| GCAGCAGCACGCACCCTCAA+TGG | - | chr6_4:80517816-80517835 | None:intergenic | 65.0% | |
| ! | GTGCCCCGGGCCACTGGTTA+AGG | + | chr6_4:80515438-80515457 | Msa0998980:intron | 70.0% |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | - | chr6_4:80515561-80515580 | None:intergenic | 70.0% |
| ! | AACCAGTGCCCCGGGGGCAC+TGG | + | chr6_4:80515562-80515581 | Msa0998980:intron | 75.0% |
| AACCAGTGCCCCCGGGGCAC+TGG | - | chr6_4:80515567-80515586 | None:intergenic | 75.0% | |
| ! | GGTGCGTGCTGCTGCCCCTG+AGG | + | chr6_4:80517821-80517840 | Msa0998980:CDS | 75.0% |
| ! | GCGTGCTGCTGCCCCTGAGG+AGG | + | chr6_4:80517824-80517843 | Msa0998980:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 80514264 | 80519980 | 80514264 | ID=Msa0998980;Name=Msa0998980 |
| chr6_4 | mRNA | 80514264 | 80519980 | 80514264 | ID=Msa0998980-mRNA-1;Parent=Msa0998980;Name=Msa0998980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=104|1|1|1|1|1|5|475|358 |
| chr6_4 | exon | 80514264 | 80514501 | 80514264 | ID=Msa0998980-mRNA-1:exon:15286;Parent=Msa0998980-mRNA-1 |
| chr6_4 | exon | 80514586 | 80514715 | 80514586 | ID=Msa0998980-mRNA-1:exon:15287;Parent=Msa0998980-mRNA-1 |
| chr6_4 | exon | 80517469 | 80517669 | 80517469 | ID=Msa0998980-mRNA-1:exon:15288;Parent=Msa0998980-mRNA-1 |
| chr6_4 | exon | 80517762 | 80517929 | 80517762 | ID=Msa0998980-mRNA-1:exon:15289;Parent=Msa0998980-mRNA-1 |
| chr6_4 | exon | 80519062 | 80519980 | 80519062 | ID=Msa0998980-mRNA-1:exon:15290;Parent=Msa0998980-mRNA-1 |
| chr6_4 | five_prime_UTR | 80514264 | 80514367 | 80514264 | ID=Msa0998980-mRNA-1:five_prime_utr;Parent=Msa0998980-mRNA-1 |
| chr6_4 | CDS | 80514368 | 80514501 | 80514368 | ID=Msa0998980-mRNA-1:cds;Parent=Msa0998980-mRNA-1 |
| chr6_4 | CDS | 80514586 | 80514715 | 80514586 | ID=Msa0998980-mRNA-1:cds;Parent=Msa0998980-mRNA-1 |
| chr6_4 | CDS | 80517469 | 80517669 | 80517469 | ID=Msa0998980-mRNA-1:cds;Parent=Msa0998980-mRNA-1 |
| chr6_4 | CDS | 80517762 | 80517929 | 80517762 | ID=Msa0998980-mRNA-1:cds;Parent=Msa0998980-mRNA-1 |
| chr6_4 | CDS | 80519062 | 80519505 | 80519062 | ID=Msa0998980-mRNA-1:cds;Parent=Msa0998980-mRNA-1 |
| chr6_4 | three_prime_UTR | 80519506 | 80519980 | 80519506 | ID=Msa0998980-mRNA-1:three_prime_utr;Parent=Msa0998980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
