AlfalfaGEDB | Msa0999650

M. sativa cultivar zhongmu-4 / Msa0999650

KEGG: K21776
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03638.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0999650	XP_003620600.2	93.810	630	15	2	1	630	1	606	0.0	1206

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0999650	sp\|Q9SZD1\|TCX5_ARATH	55.955	529	184	15	43	537	21	534	0.0	531

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0999650	A0A0C3VZM0	93.810	630	15	2	1	630	1	606	0.0	1206

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TFs/TRs:

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Gene ID	Type	Classification
Msa0999650	TF	CPP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0999650	MtrunA17_Chr6g0485811	93.810	630	15	2	1	630	1	606	0.0	1206
Msa0999650	MtrunA17_Chr8g0390351	65.789	646	155	12	1	631	1	595	0.0	790
Msa0999650	MtrunA17_Chr3g0139951	48.000	350	157	11	51	385	61	400	8.40e-86	274
Msa0999650	MtrunA17_Chr5g0394661	41.463	164	93	2	96	258	456	617	3.56e-30	126
Msa0999650	MtrunA17_Chr1g0149101	47.727	132	60	3	130	255	498	626	4.58e-29	123
Msa0999650	MtrunA17_Chr1g0205031	38.211	123	67	3	141	258	416	534	1.60e-15	80.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0999650	AT4G29000.1	55.955	529	184	15	43	537	21	534	0.0	531
Msa0999650	AT2G20110.3	51.779	506	192	13	45	537	21	487	8.06e-165	483
Msa0999650	AT2G20110.1	51.779	506	192	13	45	537	21	487	1.31e-164	483
Msa0999650	AT2G20110.2	51.072	513	192	14	45	537	21	494	9.53e-162	476
Msa0999650	AT5G25790.1	42.152	446	199	12	90	524	51	448	4.20e-103	321
Msa0999650	AT5G25790.2	42.152	446	199	12	90	524	51	448	9.38e-103	322
Msa0999650	AT5G25790.3	41.928	446	196	13	90	524	51	444	1.90e-100	314
Msa0999650	AT3G16160.1	31.175	417	179	13	113	518	43	362	6.74e-43	159
Msa0999650	AT3G22760.2	42.289	201	83	7	93	266	147	341	5.65e-36	142
Msa0999650	AT3G22760.1	42.289	201	83	7	93	266	270	464	9.30e-36	143

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Find 176 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGTTGACGTTGAGA+AGG	0.569097	6_4:+81923466	Msa0999650:CDS
AAAATTGCGAGCAGCCCTCA+GGG	0.542064	6_4:+81921347	Msa0999650:CDS
AAAATTGTTGGATCCAAAAT+TGG	0.252570	6_4:-81918809	None:intergenic
AAATTGCGAAGATGTATTGC+AGG	0.422987	6_4:-81923669	None:intergenic
AACACCTGCAGTTCCACCTA+TGG	0.480803	6_4:+81924800	Msa0999650:CDS
AACACCTGCAGTTCCACCTA+TGG	0.482822	6_4:+81924734	Msa0999650:CDS
AACACTCTTCTGTGAGGGTT+GGG	0.378551	6_4:+81919349	Msa0999650:CDS
AACAGCAGGTGGTTCAACAG+GGG	0.653532	6_4:+81919247	Msa0999650:CDS
AACTGCAGGTGTTGAAGTTG+CGG	0.594681	6_4:-81924724	None:intergenic
AACTGCAGGTGTTGAAGTTG+TGG	0.572999	6_4:-81924757	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGGAATTTGAACAATTTGA+AGG	+	chr6_4:81918985-81919004	Msa0999650:five_prime_UTR	30.0%
TTACCTAAATTCACTAAGTG+CGG	-	chr6_4:81919994-81920013	None:intergenic	30.0%
CACTTAGTGAATTTAGGTAA+CGG	+	chr6_4:81919994-81920013	Msa0999650:intron	30.0%
CCTTCTTTCATTTCAAAGTT+AGG	-	chr6_4:81920497-81920516	None:intergenic	30.0%
TATACACTAGTACAGAATTG+TGG	-	chr6_4:81920744-81920763	None:intergenic	30.0%
TTCATTAAGTGTCTGATACA+CGG	-	chr6_4:81921877-81921896	None:intergenic	30.0%
ATCAAAGAAAAGAAAAGGTC+AGG	+	chr6_4:81922232-81922251	Msa0999650:CDS	30.0%
GTCCATCAAAATTAAAGTAC+AGG	+	chr6_4:81922819-81922838	Msa0999650:CDS	30.0%
TGAATGTGTGTGCAATATAA+TGG	+	chr6_4:81923187-81923206	Msa0999650:intron	30.0%
AGAAAAGGAAACACAATCAA+TGG	-	chr6_4:81923334-81923353	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	81918692	81924905	81918692	ID=Msa0999650;Name=Msa0999650
chr6_4	mRNA	81918692	81924905	81918692	ID=Msa0999650-mRNA-1;Parent=Msa0999650;Name=Msa0999650-mRNA-1;_AED=0.08;_eAED=0.08;_QI=362\|1\|0.87\|1\|1\|1\|8\|0\|633
chr6_4	exon	81918692	81919370	81918692	ID=Msa0999650-mRNA-1:exon:15657;Parent=Msa0999650-mRNA-1
chr6_4	exon	81920463	81920570	81920463	ID=Msa0999650-mRNA-1:exon:15658;Parent=Msa0999650-mRNA-1
chr6_4	exon	81921208	81921385	81921208	ID=Msa0999650-mRNA-1:exon:15659;Parent=Msa0999650-mRNA-1
chr6_4	exon	81921960	81922310	81921960	ID=Msa0999650-mRNA-1:exon:15660;Parent=Msa0999650-mRNA-1
chr6_4	exon	81922734	81922840	81922734	ID=Msa0999650-mRNA-1:exon:15661;Parent=Msa0999650-mRNA-1
chr6_4	exon	81922913	81923007	81922913	ID=Msa0999650-mRNA-1:exon:15662;Parent=Msa0999650-mRNA-1
chr6_4	exon	81923381	81923797	81923381	ID=Msa0999650-mRNA-1:exon:15663;Parent=Msa0999650-mRNA-1
chr6_4	exon	81924577	81924905	81924577	ID=Msa0999650-mRNA-1:exon:15664;Parent=Msa0999650-mRNA-1
chr6_4	five_prime_UTR	81918692	81919053	81918692	ID=Msa0999650-mRNA-1:five_prime_utr;Parent=Msa0999650-mRNA-1
chr6_4	CDS	81919054	81919370	81919054	ID=Msa0999650-mRNA-1:cds;Parent=Msa0999650-mRNA-1
chr6_4	CDS	81920463	81920570	81920463	ID=Msa0999650-mRNA-1:cds;Parent=Msa0999650-mRNA-1
chr6_4	CDS	81921208	81921385	81921208	ID=Msa0999650-mRNA-1:cds;Parent=Msa0999650-mRNA-1
chr6_4	CDS	81921960	81922310	81921960	ID=Msa0999650-mRNA-1:cds;Parent=Msa0999650-mRNA-1
chr6_4	CDS	81922734	81922840	81922734	ID=Msa0999650-mRNA-1:cds;Parent=Msa0999650-mRNA-1
chr6_4	CDS	81922913	81923007	81922913	ID=Msa0999650-mRNA-1:cds;Parent=Msa0999650-mRNA-1
chr6_4	CDS	81923381	81923797	81923381	ID=Msa0999650-mRNA-1:cds;Parent=Msa0999650-mRNA-1
chr6_4	CDS	81924577	81924905	81924577	ID=Msa0999650-mRNA-1:cds;Parent=Msa0999650-mRNA-1

Gene Sequence

>Msa0999650

ATGGCGGAAGGTGAAGGAGGAGATTGTCCTCCAAAGAATGTTGTTCATCCGGAATTTGTTACGGTTACGACTGCGGCTGCAACGGCGGCTGCGGCTGCAAATGCGACTGCGACGGCGTGGTTGGATGTACCGTCGAAGAAGCTAGCGAGGCAGCTTGATTTTAATGCGATGTTGATGGAGCAGTCGAAACCGCAACAGCAGGTGGTTCAACAGGGGAGTGTGACGGTGCAGAAACCGGTTGGAGTGGGTGGTTTGCCGATACCGGTACCGGTGCCAACGCCGGTGCAGACAATTCAACACTCTTCTGTGAGGGTTGGGAAACAAGAATCTCCCAAACCAAGATCAAGACCTAACTTTGAAATGAAAGAAGGTACTCCAAAGAAGCAAAGGCAGTGCAATTGTAAACATTCTAAGTGCTTAAAACTATATTGTGAATGTTTTGCGTCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGACAATGAAGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTAGAGCGTAATCCAAATGCATTTAGGCCCAAAATTGCGAGCAGCCCTCAGGGAGCACGCGATAGCAGGGAGGAGGCTGGGGAAGGTTTAATATTAATAAAACATCACAAGGGGTGCCATTGTAAAAAATCTGGCTGCCTTAAGAAGTACTGTGAATGCTTCCAAGCCAACGTTCTTTGTTCTGAGAATTGTAGATGCATGGACTGCAAGAACTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTTCGTGGAGATCAAAATAACAATGTGTATCTTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTACGGCTTTTCATCACCTCCCGCATCAAAGAAAAGAAAAGGTCAGGAACTCTTCTTATGGCCTACAGCCAAGGATCCATCAATTAGCAAGCCGGGACAACAGGTGAACCTTGTCAAAGGTCCAGCACCCTCCTCATCAGCTTCACCTGTCTCAAGTGCCCGTGGTACAAATCCAACATTAGGTCAGAGTCCATCAAAATTAAAGTACAGGTCTCTTTTATCAGATGTTGTACAGCCACATCACCTGAAGGAGCTTTGTTCAGTTCTGGTACTAGTATCTGGCCAAGCTGCAAAGACGCTTGCAGACCAGAAAAAAACAGTGGAAAAGCGTACAGAAGATCAGACAGAAATTTCCCTTGCTTCATCAACTCAAGAGCAATTACCGAGTCAAAAAGAAGTTGACGTTGAGAAGGCTATGGATGATGATTGTTCAAGTGCAAATCAAACAGATAAAATCAGCCCTGGTAATTCATGTTCAGATGGCGCTGATGTCCCGAAAAGACCGATGTCTCCTGGGACTTTAGCCTTGATGTGTGACGAACAAGATTCAATGTTCATGACAGCTGCCTCTCCCATCGGGCAAACGACCCATGCCTGCAATACATCTTCGCAATTTCCTGACGGACAAGGAGTGACAGAGGTTTATGCTGAACAAGAAAGAATAGTATTAACGCAATTTAGAGATTTTCTCAATAGAGTTATTACTATGGGAGAGATAAATGAGACAAAGTGTTCTTCATTGGCTAGAAGTGAATTAGAGAATAAAAAGGATCCAATCAACAATGAAACTGGAAATGCCAGTACTGAGATAGTACATCAGCAGGAAGCCACTAGCAATGGTGATGTCAAAGCTGCATTTCCACCTATGGCCGCAACTTCAACACCTGCAGTTCCACCTATGGCCACAACTTCAACACCTGCAGTTCCACATATTGCCACAACTTCAACACCTGCAGTTCCACCTATGGCCGCAACTTCAACACCTGTGGTCCCTATTGATACTGTAGCTGAAAATGGAGAATCCAAGCTGAAGATGGAAAAAGAGACATGA

Protein sequence

>Msa0999650

MAEGEGGDCPPKNVVHPEFVTVTTAAATAAAAANATATAWLDVPSKKLARQLDFNAMLMEQSKPQQQVVQQGSVTVQKPVGVGGLPIPVPVPTPVQTIQHSSVRVGKQESPKPRSRPNFEMKEGTPKKQRQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGARDSREEAGEGLILIKHHKGCHCKKSGCLKKYCECFQANVLCSENCRCMDCKNFEGSEERQALFRGDQNNNVYLQQAANAAITGAIGSYGFSSPPASKKRKGQELFLWPTAKDPSISKPGQQVNLVKGPAPSSSASPVSSARGTNPTLGQSPSKLKYRSLLSDVVQPHHLKELCSVLVLVSGQAAKTLADQKKTVEKRTEDQTEISLASSTQEQLPSQKEVDVEKAMDDDCSSANQTDKISPGNSCSDGADVPKRPMSPGTLALMCDEQDSMFMTAASPIGQTTHACNTSSQFPDGQGVTEVYAEQERIVLTQFRDFLNRVITMGEINETKCSSLARSELENKKDPINNETGNASTEIVHQQEATSNGDVKAAFPPMAATSTPAVPPMATTSTPAVPHIATTSTPAVPPMAATSTPVVPIDTVAENGESKLKMEKET*