Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999890 | XP_012488376.1 | 58.065 | 279 | 38 | 5 | 116 | 391 | 140 | 342 | 6.21e-93 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999890 | sp|P51567|AFC2_ARATH | 27.636 | 275 | 138 | 8 | 117 | 383 | 203 | 424 | 1.10e-15 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999890 | A0A6P4MJT7 | 57.706 | 279 | 39 | 5 | 116 | 391 | 140 | 342 | 1.28e-92 | 291 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999890 | MtrunA17_Chr6g0480541 | 81.250 | 160 | 12 | 2 | 235 | 391 | 1065 | 1209 | 1.03e-75 | 254 |
| Msa0999890 | MtrunA17_Chr6g0480541 | 91.667 | 60 | 5 | 0 | 115 | 174 | 1006 | 1065 | 2.68e-30 | 123 |
| Msa0999890 | MtrunA17_Chr5g0437131 | 51.899 | 158 | 58 | 2 | 235 | 389 | 570 | 712 | 1.20e-44 | 164 |
| Msa0999890 | MtrunA17_Chr5g0437131 | 75.862 | 58 | 14 | 0 | 117 | 174 | 513 | 570 | 2.69e-24 | 105 |
| Msa0999890 | MtrunA17_Chr6g0480291 | 82.143 | 84 | 13 | 1 | 310 | 391 | 1 | 84 | 7.74e-39 | 134 |
| Msa0999890 | MtrunA17_Chr6g0480481 | 93.220 | 59 | 4 | 0 | 116 | 174 | 107 | 165 | 9.01e-32 | 119 |
| Msa0999890 | MtrunA17_Chr6g0480481 | 91.892 | 37 | 3 | 0 | 235 | 271 | 165 | 201 | 1.07e-14 | 72.4 |
| Msa0999890 | MtrunA17_Chr6g0480471 | 81.250 | 64 | 9 | 1 | 272 | 332 | 12 | 75 | 1.20e-25 | 99.0 |
| Msa0999890 | MtrunA17_Chr4g0006741 | 55.882 | 102 | 35 | 3 | 4 | 95 | 1037 | 1138 | 9.33e-24 | 103 |
| Msa0999890 | MtrunA17_Chr6g0480191 | 92.857 | 42 | 3 | 0 | 350 | 391 | 1 | 42 | 8.23e-21 | 84.7 |
| Msa0999890 | MtrunA17_Chr6g0480331 | 87.805 | 41 | 5 | 0 | 329 | 369 | 2 | 42 | 1.53e-18 | 78.6 |
| Msa0999890 | MtrunA17_Chr5g0407121 | 28.179 | 291 | 152 | 11 | 122 | 383 | 153 | 415 | 6.73e-16 | 79.0 |
| Msa0999890 | MtrunA17_Chr4g0058241 | 27.372 | 274 | 138 | 8 | 117 | 382 | 203 | 423 | 5.17e-15 | 76.3 |
| Msa0999890 | MtrunA17_Chr3g0139371 | 26.471 | 272 | 136 | 8 | 120 | 382 | 182 | 398 | 1.87e-14 | 74.3 |
| Msa0999890 | MtrunA17_Chr3g0123491 | 24.314 | 255 | 121 | 5 | 74 | 320 | 160 | 350 | 3.59e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999890 | AT1G73450.1 | 71.875 | 160 | 27 | 2 | 235 | 391 | 1008 | 1152 | 2.54e-68 | 234 |
| Msa0999890 | AT1G73450.1 | 85.000 | 60 | 9 | 0 | 115 | 174 | 949 | 1008 | 2.53e-28 | 117 |
| Msa0999890 | AT1G73460.2 | 71.875 | 160 | 27 | 2 | 235 | 391 | 1025 | 1169 | 3.47e-68 | 233 |
| Msa0999890 | AT1G73460.2 | 85.000 | 60 | 9 | 0 | 115 | 174 | 966 | 1025 | 2.81e-28 | 117 |
| Msa0999890 | AT1G73460.1 | 71.875 | 160 | 27 | 2 | 235 | 391 | 1025 | 1169 | 3.47e-68 | 233 |
| Msa0999890 | AT1G73460.1 | 85.000 | 60 | 9 | 0 | 115 | 174 | 966 | 1025 | 2.81e-28 | 117 |
| Msa0999890 | AT3G17750.1 | 73.125 | 160 | 25 | 2 | 235 | 391 | 994 | 1138 | 9.28e-66 | 226 |
| Msa0999890 | AT3G17750.1 | 83.333 | 60 | 10 | 0 | 115 | 174 | 935 | 994 | 1.98e-27 | 115 |
| Msa0999890 | AT2G40120.1 | 49.342 | 152 | 59 | 2 | 235 | 383 | 428 | 564 | 4.98e-39 | 147 |
| Msa0999890 | AT2G40120.1 | 63.077 | 65 | 24 | 0 | 110 | 174 | 364 | 428 | 1.09e-20 | 94.4 |
| Msa0999890 | AT4G03175.1 | 45.652 | 92 | 47 | 1 | 295 | 383 | 2 | 93 | 2.13e-21 | 88.6 |
| Msa0999890 | AT4G24740.6 | 27.536 | 276 | 139 | 8 | 116 | 383 | 99 | 321 | 4.32e-17 | 82.0 |
| Msa0999890 | AT4G24740.9 | 27.536 | 276 | 139 | 8 | 116 | 383 | 99 | 321 | 4.32e-17 | 82.0 |
| Msa0999890 | AT4G24740.2 | 27.536 | 276 | 139 | 8 | 116 | 383 | 99 | 321 | 4.32e-17 | 82.0 |
| Msa0999890 | AT4G24740.7 | 27.636 | 275 | 138 | 8 | 117 | 383 | 165 | 386 | 9.37e-17 | 81.6 |
| Msa0999890 | AT4G24740.1 | 27.636 | 275 | 138 | 8 | 117 | 383 | 203 | 424 | 1.11e-16 | 81.6 |
| Msa0999890 | AT3G17740.1 | 44.118 | 102 | 47 | 2 | 4 | 95 | 1028 | 1129 | 5.84e-16 | 80.5 |
| Msa0999890 | AT4G24740.10 | 27.273 | 264 | 131 | 8 | 128 | 383 | 8 | 218 | 1.36e-15 | 75.9 |
| Msa0999890 | AT4G24740.8 | 27.273 | 264 | 131 | 8 | 128 | 383 | 8 | 218 | 1.36e-15 | 75.9 |
| Msa0999890 | AT3G53570.3 | 24.458 | 323 | 179 | 8 | 74 | 387 | 168 | 434 | 1.97e-15 | 78.2 |
| Msa0999890 | AT3G53570.5 | 24.458 | 323 | 179 | 8 | 74 | 387 | 168 | 434 | 1.97e-15 | 78.2 |
| Msa0999890 | AT3G53570.1 | 24.458 | 323 | 179 | 8 | 74 | 387 | 182 | 448 | 1.99e-15 | 78.2 |
| Msa0999890 | AT3G53570.4 | 24.458 | 323 | 179 | 8 | 74 | 387 | 182 | 448 | 1.99e-15 | 78.2 |
| Msa0999890 | AT3G53570.2 | 24.458 | 323 | 179 | 8 | 74 | 387 | 182 | 448 | 1.99e-15 | 78.2 |
| Msa0999890 | AT4G32660.4 | 29.044 | 272 | 130 | 9 | 120 | 382 | 67 | 284 | 3.78e-15 | 75.9 |
| Msa0999890 | AT4G32660.1 | 29.044 | 272 | 130 | 9 | 120 | 382 | 179 | 396 | 9.81e-15 | 75.5 |
| Msa0999890 | AT4G32660.3 | 29.044 | 272 | 130 | 9 | 120 | 382 | 171 | 388 | 1.01e-14 | 75.5 |
| Msa0999890 | AT2G34650.1 | 28.452 | 239 | 144 | 7 | 68 | 296 | 138 | 359 | 1.17e-14 | 75.5 |
Find 88 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTACTTGCTAGGGTAAT+TGG | 0.122562 | 6_4:+82443467 | Msa0999890:CDS |
| ATGCAGAAGGTCGCTTCTTC+TGG | 0.292063 | 6_4:-82444230 | None:intergenic |
| GTCAATTACCATTCAATGTT+TGG | 0.292705 | 6_4:+82441120 | Msa0999890:intron |
| TTACAGCTCAGTTGTACATT+AGG | 0.321123 | 6_4:+82439511 | Msa0999890:CDS |
| TCAAACCATATTGTCCTTAC+TGG | 0.343957 | 6_4:+82439905 | Msa0999890:CDS |
| CTTGAAGCCGGAGAATGTTT+TGG | 0.347930 | 6_4:+82441186 | Msa0999890:CDS |
| CATTTCCAGTAAGGACAATA+TGG | 0.353428 | 6_4:-82439910 | None:intergenic |
| CATTACTTGCTAGGGTAATT+GGG | 0.378048 | 6_4:+82443468 | Msa0999890:CDS |
| ATACCAGGTTGAAACCATTA+TGG | 0.392020 | 6_4:+82439870 | Msa0999890:intron |
| GAGACTCCGTCCAACCATAA+TGG | 0.415427 | 6_4:-82439884 | None:intergenic |
| ACCACTGTTCGAAAGGGTAT+TGG | 0.415465 | 6_4:+82439475 | Msa0999890:CDS |
| CCACTGTTCGAAAGGGTATT+GGG | 0.416890 | 6_4:+82439476 | Msa0999890:CDS |
| ACCCTAGCAAGTAATGTTGC+CGG | 0.425646 | 6_4:-82443461 | None:intergenic |
| GCAGTGCTCTGGTATTGATA+TGG | 0.450815 | 6_4:+82440045 | Msa0999890:intron |
| ATTGGGATCATCAGTCCTAT+TGG | 0.451117 | 6_4:+82443485 | Msa0999890:CDS |
| AGGCGGAGCTACACGAGGAC+TGG | 0.457461 | 6_4:+82441293 | Msa0999890:CDS |
| TTGATATGCAGGAAAGCAAC+AGG | 0.462723 | 6_4:+82444109 | Msa0999890:intron |
| TCGTCTCTTGACAAAATTGT+GGG | 0.464714 | 6_4:-82441692 | None:intergenic |
| AGAATACTTCAAGATGATAT+CGG | 0.467186 | 6_4:-82444294 | None:intergenic |
| CTGGTCCCTTGGATGCATCT+TGG | 0.473461 | 6_4:+82442075 | Msa0999890:CDS |
| GGAAACCATCTGTAGTTGTC+TGG | 0.474606 | 6_4:+82439412 | Msa0999890:intron |
| TATGCTTAATGAGAGGAATC+AGG | 0.474909 | 6_4:+82443553 | Msa0999890:CDS |
| CCCTAGCAAGTAATGTTGCC+GGG | 0.476537 | 6_4:-82443460 | None:intergenic |
| GGTAAAAGTATGCTAGCAAA+AGG | 0.480354 | 6_4:+82443506 | Msa0999890:CDS |
| CTACAGTATTTACATAACCT+TGG | 0.481017 | 6_4:+82441148 | Msa0999890:CDS |
| AAGATTGATATCTGGTCCCT+TGG | 0.481494 | 6_4:+82442064 | Msa0999890:CDS |
| GAGATCGCCGGAAAATTATA+CGG | 0.484825 | 6_4:-82441643 | None:intergenic |
| AATAACCTCGGGAGCACGAT+AGG | 0.490675 | 6_4:-82442020 | None:intergenic |
| ACGACAAGAAGATTGATATC+TGG | 0.491358 | 6_4:+82442056 | Msa0999890:CDS |
| CCCGGCAACATTACTTGCTA+GGG | 0.494802 | 6_4:+82443460 | Msa0999890:CDS |
| CCCCGGCAACATTACTTGCT+AGG | 0.495623 | 6_4:+82443459 | Msa0999890:CDS |
| TGATGATAGCACGAGATCGC+CGG | 0.496684 | 6_4:-82441655 | None:intergenic |
| GGCGGAGCTACACGAGGACT+GGG | 0.497750 | 6_4:+82441294 | Msa0999890:CDS |
| AGTTGTACATTAGGTATGAA+TGG | 0.502422 | 6_4:+82439520 | Msa0999890:CDS |
| CAAAAGTCTCATTTCCAGTA+AGG | 0.503080 | 6_4:-82439919 | None:intergenic |
| GTCTCACACCACTGTTCGAA+AGG | 0.503447 | 6_4:+82439468 | Msa0999890:CDS |
| AGAATCCAACTGCAGTGCTC+TGG | 0.503918 | 6_4:+82440034 | Msa0999890:intron |
| TAGTGCTTCCAAACATTGAA+TGG | 0.504638 | 6_4:-82441128 | None:intergenic |
| CTGAAGCTCTAAAGCACCCC+TGG | 0.505898 | 6_4:+82444253 | Msa0999890:CDS |
| CCTCCACAAAACCTTGCATC+AGG | 0.506986 | 6_4:-82440073 | None:intergenic |
| CACAAATACTCACCAGGGGC+AGG | 0.511976 | 6_4:-82439598 | None:intergenic |
| CTTATTTCAAAATGATTCCC+CGG | 0.520946 | 6_4:+82443442 | Msa0999890:CDS |
| GAGGTGAAGGTCATTGATCT+TGG | 0.522315 | 6_4:+82441229 | Msa0999890:CDS |
| TTCGTAAGTGTATGACAACC+AGG | 0.533574 | 6_4:-82444271 | None:intergenic |
| ATCTTGGCAGAACTTTGTAC+TGG | 0.534669 | 6_4:+82442091 | Msa0999890:CDS |
| CAGGTTGAAACCATTATGGT+TGG | 0.537687 | 6_4:+82439874 | Msa0999890:intron |
| ACGAGGACTGGGGTAGGCCA+TGG | 0.542363 | 6_4:+82441305 | Msa0999890:CDS |
| TTCGTCTCTTGACAAAATTG+TGG | 0.543026 | 6_4:-82441693 | None:intergenic |
| ATACTCACCAGGGGCAGGCA+TGG | 0.549524 | 6_4:-82439593 | None:intergenic |
| TTTGAGGCATAGATTAGCCA+TGG | 0.555465 | 6_4:+82444161 | Msa0999890:CDS |
| CAAAATAAATGGGTAGGCCA+TGG | 0.556289 | 6_4:-82441322 | None:intergenic |
| GACGAACTTGATGAAGAAAG+TGG | 0.560502 | 6_4:+82441710 | Msa0999890:CDS |
| CCCAATACCCTTTCGAACAG+TGG | 0.564120 | 6_4:-82439476 | None:intergenic |
| GTGCAATCCATGCCTGCCCC+TGG | 0.564932 | 6_4:+82439586 | Msa0999890:CDS |
| TTTAGGTGAAACTGTGAAAG+CGG | 0.572412 | 6_4:+82443305 | Msa0999890:intron |
| TTGAGGCATAGATTAGCCAT+GGG | 0.575270 | 6_4:+82444162 | Msa0999890:CDS |
| CTTTGTTGCTCATTTGCTCG+AGG | 0.575791 | 6_4:+82444203 | Msa0999890:CDS |
| GTTCTGCCAAGATGCATCCA+AGG | 0.579553 | 6_4:-82442081 | None:intergenic |
| AGTCACAATGTATTAGTCCA+AGG | 0.583347 | 6_4:-82441165 | None:intergenic |
| AATACATTGTGACTTGAAGC+CGG | 0.584972 | 6_4:+82441174 | Msa0999890:CDS |
| TCTCACACCACTGTTCGAAA+GGG | 0.589330 | 6_4:+82439469 | Msa0999890:CDS |
| TGGAGGATGTTCTGAATGCA+TGG | 0.597504 | 6_4:+82440090 | Msa0999890:CDS |
| AAAAGACTATAATACCCCTA+AGG | 0.598160 | 6_4:+82441347 | Msa0999890:CDS |
| TTGAAACCATTATGGTTGGA+CGG | 0.605672 | 6_4:+82439878 | Msa0999890:CDS |
| AGCTACACGAGGACTGGGGT+AGG | 0.609112 | 6_4:+82441299 | Msa0999890:CDS |
| CCGCCTCTGCATATGAGCAA+AGG | 0.611989 | 6_4:-82441276 | None:intergenic |
| CTACAGCCGATGTGAGGTGA+AGG | 0.619012 | 6_4:+82441216 | Msa0999890:CDS |
| AAAATCTTATGCTTAATGAG+AGG | 0.620629 | 6_4:+82443546 | Msa0999890:CDS |
| ATATGGTAAGACCTGATGCA+AGG | 0.625239 | 6_4:+82440062 | Msa0999890:CDS |
| CCTTTGCTCATATGCAGAGG+CGG | 0.627154 | 6_4:+82441276 | Msa0999890:CDS |
| TTCTGCCAAGATGCATCCAA+GGG | 0.630562 | 6_4:-82442080 | None:intergenic |
| AAAAGCCAGACAACTACAGA+TGG | 0.630771 | 6_4:-82439417 | None:intergenic |
| TGAAAGCGCGAGAATAACCT+CGG | 0.632049 | 6_4:-82442032 | None:intergenic |
| TTTAGAGCTTCAGATGCAGA+AGG | 0.638379 | 6_4:-82444243 | None:intergenic |
| TAATAATAAGATTACCTTAG+GGG | 0.641697 | 6_4:-82441361 | None:intergenic |
| AAGATACGTTGAGATGCAGA+AGG | 0.641755 | 6_4:-82439558 | None:intergenic |
| TAAAAGCTACAGCCGATGTG+AGG | 0.648020 | 6_4:+82441210 | Msa0999890:CDS |
| TAGGTCCTATCGTGCTCCCG+AGG | 0.649968 | 6_4:+82442015 | Msa0999890:CDS |
| CGTAAGTGTATGACAACCAG+GGG | 0.651351 | 6_4:-82444269 | None:intergenic |
| CCTAGCAAGTAATGTTGCCG+GGG | 0.658672 | 6_4:-82443459 | None:intergenic |
| GAAAGCGCGAGAATAACCTC+GGG | 0.659252 | 6_4:-82442031 | None:intergenic |
| TCACCTTTGCTCATATGCAG+AGG | 0.663656 | 6_4:+82441273 | Msa0999890:CDS |
| TGCAGAGGCGGAGCTACACG+AGG | 0.668145 | 6_4:+82441288 | Msa0999890:CDS |
| TCGTAAGTGTATGACAACCA+GGG | 0.669359 | 6_4:-82444270 | None:intergenic |
| CAATGACCTTCACCTCACAT+CGG | 0.686191 | 6_4:-82441222 | None:intergenic |
| GCGGAGCTACACGAGGACTG+GGG | 0.738787 | 6_4:+82441295 | Msa0999890:CDS |
| TGAGGCATAGATTAGCCATG+GGG | 0.739119 | 6_4:+82444163 | Msa0999890:CDS |
| GAGGCATAGATTAGCCATGG+GGG | 0.768183 | 6_4:+82444164 | Msa0999890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAGTTTGAAAATATTTA+TGG | - | chr6_4:82442156-82442175 | None:intergenic | 10.0% |
| !! | TAATACACAATGAATTAATT+AGG | - | chr6_4:82440517-82440536 | None:intergenic | 15.0% |
| !!! | ATTTGTTGAAAATAAATTGT+CGG | - | chr6_4:82441401-82441420 | None:intergenic | 15.0% |
| !! | AAACTTTCTTAAAGAAAAAA+TGG | - | chr6_4:82441540-82441559 | None:intergenic | 15.0% |
| !! | AAATTTGTAAAAAGTGATTT+AGG | + | chr6_4:82441740-82441759 | Msa0999890:intron | 15.0% |
| !! | AATTTGTAAAAAGTGATTTA+GGG | + | chr6_4:82441741-82441760 | Msa0999890:intron | 15.0% |
| !! | TAATTGAGATTGAAAATAAA+AGG | - | chr6_4:82442896-82442915 | None:intergenic | 15.0% |
| !!! | TTTTGAAAAATTTCTCATAT+CGG | + | chr6_4:82443165-82443184 | Msa0999890:intron | 15.0% |
| !! | AATAAGGAAAGAAAATTAAT+GGG | - | chr6_4:82443391-82443410 | None:intergenic | 15.0% |
| !! | TATTAACGTTCAAATAATAT+GGG | - | chr6_4:82443876-82443895 | None:intergenic | 15.0% |
| !! | TTATTAACGTTCAAATAATA+TGG | - | chr6_4:82443877-82443896 | None:intergenic | 15.0% |
| !! | TATTAACGTTCAAATAATAT+GGG | - | chr6_4:82443876-82443895 | None:intergenic | 15.0% |
| !! | TTATTAACGTTCAAATAATA+TGG | - | chr6_4:82443877-82443896 | None:intergenic | 15.0% |
| !! | TTTCATTACTATACGTTTAA+AGG | + | chr6_4:82440134-82440153 | Msa0999890:intron | 20.0% |
| !! | GAAATCAATACAAGATTTAT+TGG | + | chr6_4:82440382-82440401 | Msa0999890:intron | 20.0% |
| !! | GTAAACTGTAAATTAAGATT+TGG | + | chr6_4:82440421-82440440 | Msa0999890:intron | 20.0% |
| !!! | AAGAACTTTTAAAAATCGAA+TGG | + | chr6_4:82440829-82440848 | Msa0999890:intron | 20.0% |
| !!! | AAAAGTTTGAATTTCAAGTA+TGG | + | chr6_4:82440879-82440898 | Msa0999890:intron | 20.0% |
| !!! | AAAGTTTGAATTTCAAGTAT+GGG | + | chr6_4:82440880-82440899 | Msa0999890:intron | 20.0% |
| !! | TTTAAACTCTCTTATTATAG+CGG | - | chr6_4:82441035-82441054 | None:intergenic | 20.0% |
| !! | TAATAAGAGAGTTTAAATGA+AGG | + | chr6_4:82441038-82441057 | Msa0999890:intron | 20.0% |
| !! | AATAAGAGAGTTTAAATGAA+GGG | + | chr6_4:82441039-82441058 | Msa0999890:intron | 20.0% |
| !!! | AGTCTTTTCACAAAATAAAT+GGG | - | chr6_4:82441335-82441354 | None:intergenic | 20.0% |
| !!! | TAGTCTTTTCACAAAATAAA+TGG | - | chr6_4:82441336-82441355 | None:intergenic | 20.0% |
| !! | TAATAATAAGATTACCTTAG+GGG | - | chr6_4:82441364-82441383 | None:intergenic | 20.0% |
| !! | GTAATAATAAGATTACCTTA+GGG | - | chr6_4:82441365-82441384 | None:intergenic | 20.0% |
| !! | AGTAATAATAAGATTACCTT+AGG | - | chr6_4:82441366-82441385 | None:intergenic | 20.0% |
| !! | CTTAGAAGAACAAATATATT+AGG | - | chr6_4:82441617-82441636 | None:intergenic | 20.0% |
| !!! | TTGATTTTTGATTTGTGATT+TGG | + | chr6_4:82441851-82441870 | Msa0999890:intron | 20.0% |
| !!! | AATTTCAATTTTTTCTCTGA+TGG | + | chr6_4:82441933-82441952 | Msa0999890:intron | 20.0% |
| !!! | ATTTTACATGTGAAAATGAT+TGG | + | chr6_4:82442387-82442406 | Msa0999890:intron | 20.0% |
| !!! | TTTTACATGTGAAAATGATT+GGG | + | chr6_4:82442388-82442407 | Msa0999890:intron | 20.0% |
| !! | ATACTTTGTCAAGTTATTTA+AGG | - | chr6_4:82442646-82442665 | None:intergenic | 20.0% |
| !! | GAAGAGAATAAGATATTAAA+GGG | - | chr6_4:82442826-82442845 | None:intergenic | 20.0% |
| !! | AGAAGAGAATAAGATATTAA+AGG | - | chr6_4:82442827-82442846 | None:intergenic | 20.0% |
| !!! | ATCATTTTCATTAATGTGAA+TGG | + | chr6_4:82443038-82443057 | Msa0999890:intron | 20.0% |
| !!! | AATTTTTTAATAACGTATCG+AGG | + | chr6_4:82443125-82443144 | Msa0999890:intron | 20.0% |
| !! | CAATAAGGAAAGAAAATTAA+TGG | - | chr6_4:82443392-82443411 | None:intergenic | 20.0% |
| !! | AACATAGTTGAATATCAATA+AGG | - | chr6_4:82443407-82443426 | None:intergenic | 20.0% |
| !!! | AGTCAATTTCAGAAATTTTA+GGG | - | chr6_4:82443693-82443712 | None:intergenic | 20.0% |
| !!! | ACTTATGACTTTATCTTTTA+TGG | - | chr6_4:82443817-82443836 | None:intergenic | 20.0% |
| !! | ATACAATCGTATGATAATAT+GGG | - | chr6_4:82444048-82444067 | None:intergenic | 20.0% |
| ! | TAAAACAATCACCGTTTATT+AGG | + | chr6_4:82439645-82439664 | Msa0999890:intron | 25.0% |
| ! | AAGTCAAAACACCTAATAAA+CGG | - | chr6_4:82439659-82439678 | None:intergenic | 25.0% |
| ! | AATATTTGGTAGAACTAGAA+AGG | + | chr6_4:82439687-82439706 | Msa0999890:intron | 25.0% |
| ! | GGATAAAGAATTGAATTTCA+TGG | + | chr6_4:82439961-82439980 | Msa0999890:intron | 25.0% |
| ! | AATTGAATTTCATGGTGATA+TGG | + | chr6_4:82439969-82439988 | Msa0999890:intron | 25.0% |
| ! | ATTTACATGTACTTCTACAA+TGG | - | chr6_4:82440185-82440204 | None:intergenic | 25.0% |
| ! | AAGTTCAAATACATTATCCA+AGG | - | chr6_4:82440220-82440239 | None:intergenic | 25.0% |
| ! | TACTGAAAAAAGCAAATATC+AGG | + | chr6_4:82440266-82440285 | Msa0999890:intron | 25.0% |
| !! | AAGTTTGAATTTCAAGTATG+GGG | + | chr6_4:82440881-82440900 | Msa0999890:intron | 25.0% |
| ! | AGTTTAAATGAAGGGTAAAT+TGG | + | chr6_4:82441047-82441066 | Msa0999890:intron | 25.0% |
| !! | TTTTCACAAAATAAATGGGT+AGG | - | chr6_4:82441331-82441350 | None:intergenic | 25.0% |
| ! | TTATTATTACTATCATGCCA+TGG | + | chr6_4:82441375-82441394 | Msa0999890:intron | 25.0% |
| ! | TATTAATCAGTCAATTGCAT+TGG | - | chr6_4:82441511-82441530 | None:intergenic | 25.0% |
| ! | CTTTCTTAAAGAAAAAATGG+TGG | - | chr6_4:82441537-82441556 | None:intergenic | 25.0% |
| ! | AGAAGAACAAATATATTAGG+AGG | - | chr6_4:82441614-82441633 | None:intergenic | 25.0% |
| ! | ACTTCATCAGTTTATTTAAG+TGG | - | chr6_4:82442365-82442384 | None:intergenic | 25.0% |
| ! | AAGTAGTCAACATTAAAACA+TGG | + | chr6_4:82442928-82442947 | Msa0999890:intron | 25.0% |
| !! | AGTACTAATGATGTTCTTTT+TGG | + | chr6_4:82442965-82442984 | Msa0999890:intron | 25.0% |
| !!! | TAGGGTTATTATGCTTTTTT+AGG | + | chr6_4:82443288-82443307 | Msa0999890:intron | 25.0% |
| !! | TTATAGTACAGTGCTTTATT+TGG | + | chr6_4:82443346-82443365 | Msa0999890:intron | 25.0% |
| !!! | AACTATGTTTGTTGTATTGT+AGG | + | chr6_4:82443418-82443437 | Msa0999890:intron | 25.0% |
| ! | AAAATCTTATGCTTAATGAG+AGG | + | chr6_4:82443546-82443565 | Msa0999890:CDS | 25.0% |
| !! | CAGTCAATTTCAGAAATTTT+AGG | - | chr6_4:82443694-82443713 | None:intergenic | 25.0% |
| ! | AAATTGTTTGAGAGAGATTA+TGG | - | chr6_4:82443845-82443864 | None:intergenic | 25.0% |
| ! | ATACAATCGTATGGTAATAT+GGG | - | chr6_4:82443915-82443934 | None:intergenic | 25.0% |
| !! | ACTTTATCTTTTATGGAATC+AGG | - | chr6_4:82443943-82443962 | None:intergenic | 25.0% |
| ! | AAATTGTTTGAGAGAGATTA+TGG | - | chr6_4:82443845-82443864 | None:intergenic | 25.0% |
| ! | CATACAATCGTATGATAATA+TGG | - | chr6_4:82444049-82444068 | None:intergenic | 25.0% |
| !!! | ACTGAATAATTTTTGGAATC+AGG | - | chr6_4:82444076-82444095 | None:intergenic | 25.0% |
| ! | ATTCCAAAAATTATTCAGTG+AGG | + | chr6_4:82444077-82444096 | Msa0999890:intron | 25.0% |
| AGTTGTACATTAGGTATGAA+TGG | + | chr6_4:82439520-82439539 | Msa0999890:CDS | 30.0% | |
| TATAACACAAATACTCACCA+GGG | - | chr6_4:82439606-82439625 | None:intergenic | 30.0% | |
| TGACTTTCGACGTAAATATT+TGG | + | chr6_4:82439673-82439692 | Msa0999890:intron | 30.0% | |
| TTTATGTAAATGTGCATACC+AGG | + | chr6_4:82439855-82439874 | Msa0999890:intron | 30.0% | |
| CAAAAGGATCTGATAATTGT+CGG | - | chr6_4:82440008-82440027 | None:intergenic | 30.0% | |
| TTACTATACGTTTAAAGGCA+TGG | + | chr6_4:82440139-82440158 | Msa0999890:intron | 30.0% | |
| ! | GTAGAAGTACATGTAAATTC+AGG | + | chr6_4:82440187-82440206 | Msa0999890:intron | 30.0% |
| TCAAATACATTATCCAAGGT+TGG | - | chr6_4:82440216-82440235 | None:intergenic | 30.0% | |
| TACAGTTTACACAATCAGAT+AGG | - | chr6_4:82440411-82440430 | None:intergenic | 30.0% | |
| ATTAAGATTTGGCTATTGCA+CGG | + | chr6_4:82440432-82440451 | Msa0999890:intron | 30.0% | |
| GAACTAACAAAAACTACATG+AGG | + | chr6_4:82440548-82440567 | Msa0999890:intron | 30.0% | |
| !!! | CTACTTTTTCAGCTATAGAA+GGG | - | chr6_4:82440674-82440693 | None:intergenic | 30.0% |
| !!! | ACTACTTTTTCAGCTATAGA+AGG | - | chr6_4:82440675-82440694 | None:intergenic | 30.0% |
| AGCTGAAAAAGTAGTCAATT+TGG | + | chr6_4:82440680-82440699 | Msa0999890:intron | 30.0% | |
| GCTGAAAAAGTAGTCAATTT+GGG | + | chr6_4:82440681-82440700 | Msa0999890:intron | 30.0% | |
| ! | GATAGATATGTTTGATTCGA+TGG | - | chr6_4:82440738-82440757 | None:intergenic | 30.0% |
| CAGCATGACAAAAATATTAG+TGG | - | chr6_4:82440929-82440948 | None:intergenic | 30.0% | |
| GTCAATTACCATTCAATGTT+TGG | + | chr6_4:82441120-82441139 | Msa0999890:intron | 30.0% | |
| CTACAGTATTTACATAACCT+TGG | + | chr6_4:82441148-82441167 | Msa0999890:CDS | 30.0% | |
| ! | CTTTTAACCAAAACATTCTC+CGG | - | chr6_4:82441196-82441215 | None:intergenic | 30.0% |
| AAAAGACTATAATACCCCTA+AGG | + | chr6_4:82441347-82441366 | Msa0999890:CDS | 30.0% | |
| AGTAAGATTCTAGCATAGTT+TGG | - | chr6_4:82441587-82441606 | None:intergenic | 30.0% | |
| ACGCTCTATAAACACTAAAA+CGG | + | chr6_4:82441783-82441802 | Msa0999890:intron | 30.0% | |
| TTAAACCTGATGTATTAGAG+AGG | - | chr6_4:82442239-82442258 | None:intergenic | 30.0% | |
| AAATCACATTTCAAGGATCA+AGG | - | chr6_4:82442280-82442299 | None:intergenic | 30.0% | |
| TTATTTAAGTGGAACGCAAA+TGG | - | chr6_4:82442354-82442373 | None:intergenic | 30.0% | |
| !! | ATAGTGGTTTGTTCAAATTC+TGG | - | chr6_4:82442508-82442527 | None:intergenic | 30.0% |
| CTTTGTCAAGTTATTTAAGG+CGG | - | chr6_4:82442643-82442662 | None:intergenic | 30.0% | |
| !!! | TTTACCATTTTTGGAGTATC+GGG | - | chr6_4:82442705-82442724 | None:intergenic | 30.0% |
| !!! | CTTTACCATTTTTGGAGTAT+CGG | - | chr6_4:82442706-82442725 | None:intergenic | 30.0% |
| ! | ACACGATTCTTTACCATTTT+TGG | - | chr6_4:82442714-82442733 | None:intergenic | 30.0% |
| CTTATTTCAAAATGATTCCC+CGG | + | chr6_4:82443442-82443461 | Msa0999890:CDS | 30.0% | |
| ATGCAAATGAAAAGTTATCG+AGG | - | chr6_4:82443640-82443659 | None:intergenic | 30.0% | |
| !!! | TCTCTTGTTTTGGTTTTTGA+AGG | - | chr6_4:82443665-82443684 | None:intergenic | 30.0% |
| CATACAATCGTATGGTAATA+TGG | - | chr6_4:82443916-82443935 | None:intergenic | 30.0% | |
| TATGATAATATGGGCATGTT+TGG | - | chr6_4:82444039-82444058 | None:intergenic | 30.0% | |
| ! | GTACCTCACTGAATAATTTT+TGG | - | chr6_4:82444083-82444102 | None:intergenic | 30.0% |
| TTACAGCTCAGTTGTACATT+AGG | + | chr6_4:82439511-82439530 | Msa0999890:CDS | 35.0% | |
| ATAACACAAATACTCACCAG+GGG | - | chr6_4:82439605-82439624 | None:intergenic | 35.0% | |
| CTATAACACAAATACTCACC+AGG | - | chr6_4:82439607-82439626 | None:intergenic | 35.0% | |
| !! | TCCACTGTTTCTAAGCTATA+AGG | + | chr6_4:82439726-82439745 | Msa0999890:intron | 35.0% |
| !! | CCACTGTTTCTAAGCTATAA+GGG | + | chr6_4:82439727-82439746 | Msa0999890:intron | 35.0% |
| CTCACAATATAGCAGCAAAA+AGG | - | chr6_4:82439823-82439842 | None:intergenic | 35.0% | |
| ! | ATACCAGGTTGAAACCATTA+TGG | + | chr6_4:82439870-82439889 | Msa0999890:intron | 35.0% |
| TTGAAACCATTATGGTTGGA+CGG | + | chr6_4:82439878-82439897 | Msa0999890:CDS | 35.0% | |
| TCAAACCATATTGTCCTTAC+TGG | + | chr6_4:82439905-82439924 | Msa0999890:CDS | 35.0% | |
| CATTTCCAGTAAGGACAATA+TGG | - | chr6_4:82439913-82439932 | None:intergenic | 35.0% | |
| CAAAAGTCTCATTTCCAGTA+AGG | - | chr6_4:82439922-82439941 | None:intergenic | 35.0% | |
| TTGTTCTACAGCAAGTAATG+TGG | + | chr6_4:82439939-82439958 | Msa0999890:intron | 35.0% | |
| TGTTCTACAGCAAGTAATGT+GGG | + | chr6_4:82439940-82439959 | Msa0999890:intron | 35.0% | |
| GTTGGATTCTTAAGAGCAAA+AGG | - | chr6_4:82440024-82440043 | None:intergenic | 35.0% | |
| GAAGTACATGTAAATTCAGG+AGG | + | chr6_4:82440190-82440209 | Msa0999890:intron | 35.0% | |
| TTAAGATTTGGCTATTGCAC+GGG | + | chr6_4:82440433-82440452 | Msa0999890:intron | 35.0% | |
| ! | ATTAGGCATGTCACAAGTTT+TGG | - | chr6_4:82440500-82440519 | None:intergenic | 35.0% |
| ATGGCTATGTAAAAGCAGTA+AGG | + | chr6_4:82440709-82440728 | Msa0999890:intron | 35.0% | |
| ! | TATCTGATGTGATCTGAGAT+TGG | + | chr6_4:82440754-82440773 | Msa0999890:intron | 35.0% |
| ! | TTTGAATTTCAAGTATGGGG+AGG | + | chr6_4:82440884-82440903 | Msa0999890:intron | 35.0% |
| ! | ATTTTTGTCATGCTGTCACA+TGG | + | chr6_4:82440934-82440953 | Msa0999890:intron | 35.0% |
| ! | TTTGAGTTTCGTCTAATGCA+TGG | + | chr6_4:82440980-82440999 | Msa0999890:intron | 35.0% |
| TTGAGTTTCGTCTAATGCAT+GGG | + | chr6_4:82440981-82441000 | Msa0999890:intron | 35.0% | |
| TAGTGCTTCCAAACATTGAA+TGG | - | chr6_4:82441131-82441150 | None:intergenic | 35.0% | |
| AGTCACAATGTATTAGTCCA+AGG | - | chr6_4:82441168-82441187 | None:intergenic | 35.0% | |
| AATACATTGTGACTTGAAGC+CGG | + | chr6_4:82441174-82441193 | Msa0999890:CDS | 35.0% | |
| TGAAAATAAATTGTCGGCCA+TGG | - | chr6_4:82441395-82441414 | None:intergenic | 35.0% | |
| GGAACATATTCTACTGTTCA+TGG | - | chr6_4:82441474-82441493 | None:intergenic | 35.0% | |
| TAATCAGTCAATTGCATTGG+AGG | - | chr6_4:82441508-82441527 | None:intergenic | 35.0% | |
| AGATTCTAGCATAGTTTGGT+GGG | - | chr6_4:82441583-82441602 | None:intergenic | 35.0% | |
| AAGATTCTAGCATAGTTTGG+TGG | - | chr6_4:82441584-82441603 | None:intergenic | 35.0% | |
| ! | GTCAACACCGTATAATTTTC+CGG | + | chr6_4:82441636-82441655 | Msa0999890:intron | 35.0% |
| TCGTCTCTTGACAAAATTGT+GGG | - | chr6_4:82441695-82441714 | None:intergenic | 35.0% | |
| TTCGTCTCTTGACAAAATTG+TGG | - | chr6_4:82441696-82441715 | None:intergenic | 35.0% | |
| ACGACAAGAAGATTGATATC+TGG | + | chr6_4:82442056-82442075 | Msa0999890:CDS | 35.0% | |
| CATGTCAAATTTCGTGTTTG+AGG | + | chr6_4:82442192-82442211 | Msa0999890:intron | 35.0% | |
| ! | GGAAAACTAGAGCACTTTAT+CGG | - | chr6_4:82442218-82442237 | None:intergenic | 35.0% |
| ! | GTTTTCCTCTCTAATACATC+AGG | + | chr6_4:82442231-82442250 | Msa0999890:intron | 35.0% |
| GAACGCAAATGGAATGAAAT+GGG | - | chr6_4:82442343-82442362 | None:intergenic | 35.0% | |
| GATTGGGTGTTCTTAAATAG+TGG | + | chr6_4:82442404-82442423 | Msa0999890:intron | 35.0% | |
| ACAACGATAATGCAGAACAA+TGG | - | chr6_4:82442460-82442479 | None:intergenic | 35.0% | |
| GTTCTGCATTATCGTTGTAT+TGG | + | chr6_4:82442462-82442481 | Msa0999890:intron | 35.0% | |
| AAGTTTCTTTGTTGCTGTAG+TGG | + | chr6_4:82442558-82442577 | Msa0999890:intron | 35.0% | |
| !!! | TTACCATTTTTGGAGTATCG+GGG | - | chr6_4:82442704-82442723 | None:intergenic | 35.0% |
| GGAGAACAGAAGATACTAAT+CGG | - | chr6_4:82442748-82442767 | None:intergenic | 35.0% | |
| GATTAGTATCTTCTGTTCTC+CGG | + | chr6_4:82442747-82442766 | Msa0999890:intron | 35.0% | |
| AGAAACAAAGTAGAACTCAC+CGG | - | chr6_4:82442769-82442788 | None:intergenic | 35.0% | |
| TGTATACTCTTTGCAGTTGT+AGG | + | chr6_4:82443269-82443288 | Msa0999890:intron | 35.0% | |
| GTATACTCTTTGCAGTTGTA+GGG | + | chr6_4:82443270-82443289 | Msa0999890:intron | 35.0% | |
| TTTAGGTGAAACTGTGAAAG+CGG | + | chr6_4:82443305-82443324 | Msa0999890:intron | 35.0% | |
| ! | ACATTACTTGCTAGGGTAAT+TGG | + | chr6_4:82443467-82443486 | Msa0999890:CDS | 35.0% |
| ! | CATTACTTGCTAGGGTAATT+GGG | + | chr6_4:82443468-82443487 | Msa0999890:CDS | 35.0% |
| ! | GCTAGCATACTTTTACCAAT+AGG | - | chr6_4:82443503-82443522 | None:intergenic | 35.0% |
| ! | GGTAAAAGTATGCTAGCAAA+AGG | + | chr6_4:82443506-82443525 | Msa0999890:CDS | 35.0% |
| TATGCTTAATGAGAGGAATC+AGG | + | chr6_4:82443553-82443572 | Msa0999890:CDS | 35.0% | |
| CTGTATTCGTTCGAGTATAT+TGG | + | chr6_4:82443711-82443730 | Msa0999890:intron | 35.0% | |
| TGAAGTTGTTCATCCAAACA+TGG | - | chr6_4:82443737-82443756 | None:intergenic | 35.0% | |
| AATATGGGCATGTTTGGATT+GGG | - | chr6_4:82443900-82443919 | None:intergenic | 35.0% | |
| TAATATGGGCATGTTTGGAT+TGG | - | chr6_4:82443901-82443920 | None:intergenic | 35.0% | |
| TATGGTAATATGGGCATGTT+TGG | - | chr6_4:82443906-82443925 | None:intergenic | 35.0% | |
| CAGGTAAACATACAATCGTA+TGG | - | chr6_4:82443924-82443943 | None:intergenic | 35.0% | |
| AATATGGGCATGTTTGGATT+GGG | - | chr6_4:82443900-82443919 | None:intergenic | 35.0% | |
| TAATATGGGCATGTTTGGAT+TGG | - | chr6_4:82443901-82443920 | None:intergenic | 35.0% | |
| !! | AAGATGTCTTTTTGGGAATC+AGG | - | chr6_4:82444143-82444162 | None:intergenic | 35.0% |
| TTCCCAAAAAGACATCTTTG+AGG | + | chr6_4:82444145-82444164 | Msa0999890:CDS | 35.0% | |
| ! | TGCCTCAAAGATGTCTTTTT+GGG | - | chr6_4:82444150-82444169 | None:intergenic | 35.0% |
| ! | ATGCCTCAAAGATGTCTTTT+TGG | - | chr6_4:82444151-82444170 | None:intergenic | 35.0% |
| TTCTTTGACTCTACACTGTC+AGG | + | chr6_4:82439391-82439410 | Msa0999890:intron | 40.0% | |
| AAAAGCCAGACAACTACAGA+TGG | - | chr6_4:82439420-82439439 | None:intergenic | 40.0% | |
| AAGATACGTTGAGATGCAGA+AGG | - | chr6_4:82439561-82439580 | None:intergenic | 40.0% | |
| CCCTTATAGCTTAGAAACAG+TGG | - | chr6_4:82439730-82439749 | None:intergenic | 40.0% | |
| CAACCATAATGGTTTCAACC+TGG | - | chr6_4:82439876-82439895 | None:intergenic | 40.0% | |
| ! | CAGGTTGAAACCATTATGGT+TGG | + | chr6_4:82439874-82439893 | Msa0999890:intron | 40.0% |
| !! | TCTGATAATTGTCGGTTCTC+AGG | - | chr6_4:82440000-82440019 | None:intergenic | 40.0% |
| ATATGGTAAGACCTGATGCA+AGG | + | chr6_4:82440062-82440081 | Msa0999890:CDS | 40.0% | |
| ! | TTGGTTCGAGCACCAAATAA+CGG | + | chr6_4:82440620-82440639 | Msa0999890:intron | 40.0% |
| !! | ACAAAGAGTGTCCCGTTATT+TGG | - | chr6_4:82440635-82440654 | None:intergenic | 40.0% |
| ! | AAATAACGGGACACTCTTTG+TGG | + | chr6_4:82440634-82440653 | Msa0999890:intron | 40.0% |
| GTAGTCAATTTGGGTGTCAA+TGG | + | chr6_4:82440690-82440709 | Msa0999890:intron | 40.0% | |
| ! | GTGATCTGAGATTGGAAGAA+AGG | + | chr6_4:82440762-82440781 | Msa0999890:intron | 40.0% |
| TGAGTTTCGTCTAATGCATG+GGG | + | chr6_4:82440982-82441001 | Msa0999890:intron | 40.0% | |
| CAAAATAAATGGGTAGGCCA+TGG | - | chr6_4:82441325-82441344 | None:intergenic | 40.0% | |
| ! | TTTTCAACAAATGCTGCTGC+TGG | + | chr6_4:82441409-82441428 | Msa0999890:intron | 40.0% |
| ! | AGCATAGTTTGGTGGGATTT+GGG | - | chr6_4:82441576-82441595 | None:intergenic | 40.0% |
| ! | TAGCATAGTTTGGTGGGATT+TGG | - | chr6_4:82441577-82441596 | None:intergenic | 40.0% |
| GAGATCGCCGGAAAATTATA+CGG | - | chr6_4:82441646-82441665 | None:intergenic | 40.0% | |
| GACGAACTTGATGAAGAAAG+TGG | + | chr6_4:82441710-82441729 | Msa0999890:CDS | 40.0% | |
| !!! | GAGCCAGCCAAAATTTTTTG+GGG | - | chr6_4:82441972-82441991 | None:intergenic | 40.0% |
| !!! | GGAGCCAGCCAAAATTTTTT+GGG | - | chr6_4:82441973-82441992 | None:intergenic | 40.0% |
| TAGACTGAACATATGAGCAG+TGG | - | chr6_4:82441997-82442016 | None:intergenic | 40.0% | |
| ACTGCTCATATGTTCAGTCT+AGG | + | chr6_4:82441996-82442015 | Msa0999890:intron | 40.0% | |
| AAGATTGATATCTGGTCCCT+TGG | + | chr6_4:82442064-82442083 | Msa0999890:CDS | 40.0% | |
| ATCTTGGCAGAACTTTGTAC+TGG | + | chr6_4:82442091-82442110 | Msa0999890:CDS | 40.0% | |
| AGGATCAAGGAGTGAATTTC+AGG | - | chr6_4:82442267-82442286 | None:intergenic | 40.0% | |
| AGGGGAGAAATCACATTTCA+AGG | - | chr6_4:82442287-82442306 | None:intergenic | 40.0% | |
| TTGAAATGTGATTTCTCCCC+TGG | + | chr6_4:82442286-82442305 | Msa0999890:intron | 40.0% | |
| TACAACAATTCCATCACCAG+GGG | - | chr6_4:82442305-82442324 | None:intergenic | 40.0% | |
| GTACAACAATTCCATCACCA+GGG | - | chr6_4:82442306-82442325 | None:intergenic | 40.0% | |
| !! | GAAATGGGACAGCTTGTTTT+TGG | - | chr6_4:82442328-82442347 | None:intergenic | 40.0% |
| GGAACGCAAATGGAATGAAA+TGG | - | chr6_4:82442344-82442363 | None:intergenic | 40.0% | |
| AAATAGTGGCTATAGCGTAG+TGG | + | chr6_4:82442418-82442437 | Msa0999890:intron | 40.0% | |
| TTGTGCACAGCAGAAAATAG+TGG | - | chr6_4:82442524-82442543 | None:intergenic | 40.0% | |
| ! | GTTGCTGTAGTGGAACTATA+TGG | + | chr6_4:82442568-82442587 | Msa0999890:intron | 40.0% |
| GATACTAATCGGATACGTGT+CGG | - | chr6_4:82442737-82442756 | None:intergenic | 40.0% | |
| TCAAAACTCCCGATACGATA+CGG | - | chr6_4:82443151-82443170 | None:intergenic | 40.0% | |
| ATTGGGATCATCAGTCCTAT+TGG | + | chr6_4:82443485-82443504 | Msa0999890:CDS | 40.0% | |
| !! | TAGGGAGCTATCTCTTGTTT+TGG | - | chr6_4:82443675-82443694 | None:intergenic | 40.0% |
| TCGAGTATATTGGCCATGTT+TGG | + | chr6_4:82443721-82443740 | Msa0999890:intron | 40.0% | |
| ! | GGTACTGTGTATTGATATGC+AGG | + | chr6_4:82444098-82444117 | Msa0999890:intron | 40.0% |
| TTGATATGCAGGAAAGCAAC+AGG | + | chr6_4:82444109-82444128 | Msa0999890:intron | 40.0% | |
| ! | TTTGAGGCATAGATTAGCCA+TGG | + | chr6_4:82444161-82444180 | Msa0999890:CDS | 40.0% |
| ! | TTGAGGCATAGATTAGCCAT+GGG | + | chr6_4:82444162-82444181 | Msa0999890:CDS | 40.0% |
| ! | TTTAGAGCTTCAGATGCAGA+AGG | - | chr6_4:82444246-82444265 | None:intergenic | 40.0% |
| TCGTAAGTGTATGACAACCA+GGG | - | chr6_4:82444273-82444292 | None:intergenic | 40.0% | |
| TTCGTAAGTGTATGACAACC+AGG | - | chr6_4:82444274-82444293 | None:intergenic | 40.0% | |
| GGAAACCATCTGTAGTTGTC+TGG | + | chr6_4:82439412-82439431 | Msa0999890:intron | 45.0% | |
| TCTCACACCACTGTTCGAAA+GGG | + | chr6_4:82439469-82439488 | Msa0999890:CDS | 45.0% | |
| ! | ACCACTGTTCGAAAGGGTAT+TGG | + | chr6_4:82439475-82439494 | Msa0999890:CDS | 45.0% |
| !! | CCACTGTTCGAAAGGGTATT+GGG | + | chr6_4:82439476-82439495 | Msa0999890:CDS | 45.0% |
| !! | GCAGTGCTCTGGTATTGATA+TGG | + | chr6_4:82440045-82440064 | Msa0999890:intron | 45.0% |
| ! | AGACCTGATGCAAGGTTTTG+TGG | + | chr6_4:82440070-82440089 | Msa0999890:CDS | 45.0% |
| ! | TGGAGGATGTTCTGAATGCA+TGG | + | chr6_4:82440090-82440109 | Msa0999890:CDS | 45.0% |
| TAAATTCAGGAGGCCAACCT+TGG | + | chr6_4:82440200-82440219 | Msa0999890:intron | 45.0% | |
| GGAAGGATAGGGAATAGAGA+CGG | + | chr6_4:82440461-82440480 | Msa0999890:intron | 45.0% | |
| GATAGGGAATAGAGACGGTA+GGG | + | chr6_4:82440466-82440485 | Msa0999890:intron | 45.0% | |
| TTGATTGCCAACCAGAACAG+AGG | + | chr6_4:82440587-82440606 | Msa0999890:intron | 45.0% | |
| TGATTGCCAACCAGAACAGA+GGG | + | chr6_4:82440588-82440607 | Msa0999890:intron | 45.0% | |
| !! | ATTTGGTGCTCGAACCAATC+TGG | - | chr6_4:82440618-82440637 | None:intergenic | 45.0% |
| TGGTTCGAGCACCAAATAAC+GGG | + | chr6_4:82440621-82440640 | Msa0999890:intron | 45.0% | |
| ! | CTTGAAGCCGGAGAATGTTT+TGG | + | chr6_4:82441186-82441205 | Msa0999890:CDS | 45.0% |
| TAAAAGCTACAGCCGATGTG+AGG | + | chr6_4:82441210-82441229 | Msa0999890:CDS | 45.0% | |
| CAATGACCTTCACCTCACAT+CGG | - | chr6_4:82441225-82441244 | None:intergenic | 45.0% | |
| GAGGTGAAGGTCATTGATCT+TGG | + | chr6_4:82441229-82441248 | Msa0999890:CDS | 45.0% | |
| TCACCTTTGCTCATATGCAG+AGG | + | chr6_4:82441273-82441292 | Msa0999890:CDS | 45.0% | |
| CAGTCAATTGCATTGGAGGA+CGG | - | chr6_4:82441504-82441523 | None:intergenic | 45.0% | |
| ! | GCATAGTTTGGTGGGATTTG+GGG | - | chr6_4:82441575-82441594 | None:intergenic | 45.0% |
| !!! | CCAGCCAAAATTTTTTGGGG+TGG | - | chr6_4:82441969-82441988 | None:intergenic | 45.0% |
| !! | CCACCCCAAAAAATTTTGGC+TGG | + | chr6_4:82441966-82441985 | Msa0999890:intron | 45.0% |
| !!! | CGGAGCCAGCCAAAATTTTT+TGG | - | chr6_4:82441974-82441993 | None:intergenic | 45.0% |
| ACTGAACATATGAGCAGTGG+CGG | - | chr6_4:82441994-82442013 | None:intergenic | 45.0% | |
| ! | TGAAAGCGCGAGAATAACCT+CGG | - | chr6_4:82442035-82442054 | None:intergenic | 45.0% |
| TTCTGCCAAGATGCATCCAA+GGG | - | chr6_4:82442083-82442102 | None:intergenic | 45.0% | |
| GGTACAACAATTCCATCACC+AGG | - | chr6_4:82442307-82442326 | None:intergenic | 45.0% | |
| AAGCCCCGATACTCCAAAAA+TGG | + | chr6_4:82442698-82442717 | Msa0999890:intron | 45.0% | |
| TATCGTATCCGTATCGTGTC+AGG | + | chr6_4:82443193-82443212 | Msa0999890:intron | 45.0% | |
| ATCCGTATCGTGTCAGGTAT+CGG | + | chr6_4:82443199-82443218 | Msa0999890:intron | 45.0% | |
| ACCCTAGCAAGTAATGTTGC+CGG | - | chr6_4:82443464-82443483 | None:intergenic | 45.0% | |
| ! | TGAGGCATAGATTAGCCATG+GGG | + | chr6_4:82444163-82444182 | Msa0999890:CDS | 45.0% |
| CTTTGTTGCTCATTTGCTCG+AGG | + | chr6_4:82444203-82444222 | Msa0999890:CDS | 45.0% | |
| CGTAAGTGTATGACAACCAG+GGG | - | chr6_4:82444272-82444291 | None:intergenic | 45.0% | |
| !!! | AAAAAATTGAAATTTTTTTA+TGG | - | chr6_4:82441927-82441946 | None:intergenic | 5.0% |
| GTCTCACACCACTGTTCGAA+AGG | + | chr6_4:82439468-82439487 | Msa0999890:CDS | 50.0% | |
| CCCAATACCCTTTCGAACAG+TGG | - | chr6_4:82439479-82439498 | None:intergenic | 50.0% | |
| GAGACTCCGTCCAACCATAA+TGG | - | chr6_4:82439887-82439906 | None:intergenic | 50.0% | |
| AGAATCCAACTGCAGTGCTC+TGG | + | chr6_4:82440034-82440053 | Msa0999890:intron | 50.0% | |
| !! | CAATACCAGAGCACTGCAGT+TGG | - | chr6_4:82440042-82440061 | None:intergenic | 50.0% |
| CCTCCACAAAACCTTGCATC+AGG | - | chr6_4:82440076-82440095 | None:intergenic | 50.0% | |
| !! | CCTGATGCAAGGTTTTGTGG+AGG | + | chr6_4:82440073-82440092 | Msa0999890:CDS | 50.0% |
| GGATAGGGAATAGAGACGGT+AGG | + | chr6_4:82440465-82440484 | Msa0999890:intron | 50.0% | |
| GATTGCCAACCAGAACAGAG+GGG | + | chr6_4:82440589-82440608 | Msa0999890:intron | 50.0% | |
| ! | ATCTGGAATCCCCTCTGTTC+TGG | - | chr6_4:82440601-82440620 | None:intergenic | 50.0% |
| GAACAGAGGGGATTCCAGAT+TGG | + | chr6_4:82440601-82440620 | Msa0999890:intron | 50.0% | |
| TTTCGTCTAATGCATGGGGC+TGG | + | chr6_4:82440986-82441005 | Msa0999890:intron | 50.0% | |
| CCTTTGCTCATATGCAGAGG+CGG | + | chr6_4:82441276-82441295 | Msa0999890:CDS | 50.0% | |
| TCAACAAATGCTGCTGCTGG+TGG | + | chr6_4:82441412-82441431 | Msa0999890:intron | 50.0% | |
| GCATTGGAGGACGGAATTGT+GGG | - | chr6_4:82441495-82441514 | None:intergenic | 50.0% | |
| TGCATTGGAGGACGGAATTG+TGG | - | chr6_4:82441496-82441515 | None:intergenic | 50.0% | |
| TGATGATAGCACGAGATCGC+CGG | - | chr6_4:82441658-82441677 | None:intergenic | 50.0% | |
| !! | TTTTCTCTGATGGCGAGCTG+CGG | + | chr6_4:82441943-82441962 | Msa0999890:intron | 50.0% |
| ! | GCGGCCACCCCAAAAAATTT+TGG | + | chr6_4:82441962-82441981 | Msa0999890:intron | 50.0% |
| ! | AATAACCTCGGGAGCACGAT+AGG | - | chr6_4:82442023-82442042 | None:intergenic | 50.0% |
| ! | GAAAGCGCGAGAATAACCTC+GGG | - | chr6_4:82442034-82442053 | None:intergenic | 50.0% |
| GTTCTGCCAAGATGCATCCA+AGG | - | chr6_4:82442084-82442103 | None:intergenic | 50.0% | |
| TGTGATTTCTCCCCTGGTGA+TGG | + | chr6_4:82442292-82442311 | Msa0999890:intron | 50.0% | |
| GTATCGAGGCCGTATCGTAT+CGG | + | chr6_4:82443139-82443158 | Msa0999890:intron | 50.0% | |
| TATCGAGGCCGTATCGTATC+GGG | + | chr6_4:82443140-82443159 | Msa0999890:intron | 50.0% | |
| TCCGTATCGTGTCAGGTATC+GGG | + | chr6_4:82443200-82443219 | Msa0999890:intron | 50.0% | |
| CCTAGCAAGTAATGTTGCCG+GGG | - | chr6_4:82443462-82443481 | None:intergenic | 50.0% | |
| CCCTAGCAAGTAATGTTGCC+GGG | - | chr6_4:82443463-82443482 | None:intergenic | 50.0% | |
| ! | CCCGGCAACATTACTTGCTA+GGG | + | chr6_4:82443460-82443479 | Msa0999890:CDS | 50.0% |
| ! | GAGGCATAGATTAGCCATGG+GGG | + | chr6_4:82444164-82444183 | Msa0999890:CDS | 50.0% |
| ! | TAGATTAGCCATGGGGGATC+AGG | + | chr6_4:82444170-82444189 | Msa0999890:CDS | 50.0% |
| ! | AGATTAGCCATGGGGGATCA+GGG | + | chr6_4:82444171-82444190 | Msa0999890:CDS | 50.0% |
| ATGCAGAAGGTCGCTTCTTC+TGG | - | chr6_4:82444233-82444252 | None:intergenic | 50.0% | |
| CACAAATACTCACCAGGGGC+AGG | - | chr6_4:82439601-82439620 | None:intergenic | 55.0% | |
| TTGGCTATTGCACGGGTGCA+CGG | + | chr6_4:82440440-82440459 | Msa0999890:intron | 55.0% | |
| GGAATCCCCTCTGTTCTGGT+TGG | - | chr6_4:82440597-82440616 | None:intergenic | 55.0% | |
| CTACAGCCGATGTGAGGTGA+AGG | + | chr6_4:82441216-82441235 | Msa0999890:CDS | 55.0% | |
| CCGCCTCTGCATATGAGCAA+AGG | - | chr6_4:82441279-82441298 | None:intergenic | 55.0% | |
| CTGGTCCCTTGGATGCATCT+TGG | + | chr6_4:82442075-82442094 | Msa0999890:CDS | 55.0% | |
| CCCCGATACCTGACACGATA+CGG | - | chr6_4:82443204-82443223 | None:intergenic | 55.0% | |
| ! | CCGTATCGTGTCAGGTATCG+GGG | + | chr6_4:82443201-82443220 | Msa0999890:intron | 55.0% |
| CCCCGGCAACATTACTTGCT+AGG | + | chr6_4:82443459-82443478 | Msa0999890:CDS | 55.0% | |
| AATGAAGCCCTGATCCCCCA+TGG | - | chr6_4:82444181-82444200 | None:intergenic | 55.0% | |
| !! | CTGAAGCTCTAAAGCACCCC+TGG | + | chr6_4:82444253-82444272 | Msa0999890:CDS | 55.0% |
| ATACTCACCAGGGGCAGGCA+TGG | - | chr6_4:82439596-82439615 | None:intergenic | 60.0% | |
| CTATTGCACGGGTGCACGGA+AGG | + | chr6_4:82440444-82440463 | Msa0999890:intron | 60.0% | |
| CACGGGTGCACGGAAGGATA+GGG | + | chr6_4:82440450-82440469 | Msa0999890:intron | 60.0% | |
| CGTCTAATGCATGGGGCTGG+AGG | + | chr6_4:82440989-82441008 | Msa0999890:intron | 60.0% | |
| AGCTACACGAGGACTGGGGT+AGG | + | chr6_4:82441299-82441318 | Msa0999890:CDS | 60.0% | |
| TAGGTCCTATCGTGCTCCCG+AGG | + | chr6_4:82442015-82442034 | Msa0999890:CDS | 60.0% | |
| GTGCAATCCATGCCTGCCCC+TGG | + | chr6_4:82439586-82439605 | Msa0999890:CDS | 65.0% | |
| GCACGGGTGCACGGAAGGAT+AGG | + | chr6_4:82440449-82440468 | Msa0999890:intron | 65.0% | |
| TGCAGAGGCGGAGCTACACG+AGG | + | chr6_4:82441288-82441307 | Msa0999890:CDS | 65.0% | |
| AGGCGGAGCTACACGAGGAC+TGG | + | chr6_4:82441293-82441312 | Msa0999890:CDS | 65.0% | |
| GGCGGAGCTACACGAGGACT+GGG | + | chr6_4:82441294-82441313 | Msa0999890:CDS | 65.0% | |
| GCGGAGCTACACGAGGACTG+GGG | + | chr6_4:82441295-82441314 | Msa0999890:CDS | 65.0% | |
| ACGAGGACTGGGGTAGGCCA+TGG | + | chr6_4:82441305-82441324 | Msa0999890:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 82439331 | 82444308 | 82439331 | ID=Msa0999890;Name=Msa0999890 |
| chr6_4 | mRNA | 82439331 | 82444308 | 82439331 | ID=Msa0999890-mRNA-1;Parent=Msa0999890;Name=Msa0999890-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.4|1|1|10|0|391 |
| chr6_4 | exon | 82439331 | 82439341 | 82439331 | ID=Msa0999890-mRNA-1:exon:15852;Parent=Msa0999890-mRNA-1 |
| chr6_4 | exon | 82439413 | 82439607 | 82439413 | ID=Msa0999890-mRNA-1:exon:15853;Parent=Msa0999890-mRNA-1 |
| chr6_4 | exon | 82439877 | 82439952 | 82439877 | ID=Msa0999890-mRNA-1:exon:15854;Parent=Msa0999890-mRNA-1 |
| chr6_4 | exon | 82440049 | 82440111 | 82440049 | ID=Msa0999890-mRNA-1:exon:15855;Parent=Msa0999890-mRNA-1 |
| chr6_4 | exon | 82441121 | 82441368 | 82441121 | ID=Msa0999890-mRNA-1:exon:15856;Parent=Msa0999890-mRNA-1 |
| chr6_4 | exon | 82441637 | 82441745 | 82441637 | ID=Msa0999890-mRNA-1:exon:15857;Parent=Msa0999890-mRNA-1 |
| chr6_4 | exon | 82442013 | 82442121 | 82442013 | ID=Msa0999890-mRNA-1:exon:15858;Parent=Msa0999890-mRNA-1 |
| chr6_4 | exon | 82443310 | 82443350 | 82443310 | ID=Msa0999890-mRNA-1:exon:15859;Parent=Msa0999890-mRNA-1 |
| chr6_4 | exon | 82443440 | 82443574 | 82443440 | ID=Msa0999890-mRNA-1:exon:15860;Parent=Msa0999890-mRNA-1 |
| chr6_4 | exon | 82444120 | 82444308 | 82444120 | ID=Msa0999890-mRNA-1:exon:15861;Parent=Msa0999890-mRNA-1 |
| chr6_4 | CDS | 82439331 | 82439341 | 82439331 | ID=Msa0999890-mRNA-1:cds;Parent=Msa0999890-mRNA-1 |
| chr6_4 | CDS | 82439413 | 82439607 | 82439413 | ID=Msa0999890-mRNA-1:cds;Parent=Msa0999890-mRNA-1 |
| chr6_4 | CDS | 82439877 | 82439952 | 82439877 | ID=Msa0999890-mRNA-1:cds;Parent=Msa0999890-mRNA-1 |
| chr6_4 | CDS | 82440049 | 82440111 | 82440049 | ID=Msa0999890-mRNA-1:cds;Parent=Msa0999890-mRNA-1 |
| chr6_4 | CDS | 82441121 | 82441368 | 82441121 | ID=Msa0999890-mRNA-1:cds;Parent=Msa0999890-mRNA-1 |
| chr6_4 | CDS | 82441637 | 82441745 | 82441637 | ID=Msa0999890-mRNA-1:cds;Parent=Msa0999890-mRNA-1 |
| chr6_4 | CDS | 82442013 | 82442121 | 82442013 | ID=Msa0999890-mRNA-1:cds;Parent=Msa0999890-mRNA-1 |
| chr6_4 | CDS | 82443310 | 82443350 | 82443310 | ID=Msa0999890-mRNA-1:cds;Parent=Msa0999890-mRNA-1 |
| chr6_4 | CDS | 82443440 | 82443574 | 82443440 | ID=Msa0999890-mRNA-1:cds;Parent=Msa0999890-mRNA-1 |
| chr6_4 | CDS | 82444120 | 82444308 | 82444120 | ID=Msa0999890-mRNA-1:cds;Parent=Msa0999890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
