Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999900 | XP_024642081.1 | 93.309 | 269 | 12 | 1 | 1 | 269 | 1 | 263 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999900 | sp|Q568K5|NAA40_DANRE | 34.199 | 231 | 126 | 4 | 23 | 251 | 10 | 216 | 6.28e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999900 | A0A396HG85 | 93.309 | 269 | 12 | 1 | 1 | 269 | 1 | 263 | 0.0 | 513 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0999900 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999900 | MtrunA17_Chr6g0479551 | 93.309 | 269 | 12 | 1 | 1 | 269 | 1 | 263 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999900 | AT1G18335.3 | 51.698 | 265 | 116 | 4 | 3 | 263 | 6 | 262 | 3.03e-80 | 243 |
| Msa0999900 | AT1G18335.2 | 51.698 | 265 | 116 | 4 | 3 | 263 | 6 | 262 | 3.03e-80 | 243 |
| Msa0999900 | AT1G18335.1 | 51.515 | 264 | 116 | 4 | 3 | 262 | 6 | 261 | 6.67e-80 | 242 |
Find 72 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTACTATCTTTCTTATAT+TGG | 0.149005 | 6_4:-82445891 | Msa0999900:three_prime_UTR |
| AATTTCGAAACGGCGATAAA+TGG | 0.157325 | 6_4:+82449776 | None:intergenic |
| CTCTGTATATATTGTTTAAC+AGG | 0.263897 | 6_4:+82448378 | None:intergenic |
| AATGGAGATTTAAAATTAAC+TGG | 0.264128 | 6_4:+82445988 | None:intergenic |
| AGCGTCTCCGAGTTCATTGC+TGG | 0.345011 | 6_4:+82450024 | None:intergenic |
| ACCATTGGATAAACTTTAGA+AGG | 0.346375 | 6_4:+82446218 | None:intergenic |
| ACCCTTCTTATCAATACTTA+AGG | 0.354468 | 6_4:-82445930 | Msa0999900:three_prime_UTR |
| CTTAACATGGAAGGGCCATA+TGG | 0.380703 | 6_4:-82447600 | Msa0999900:CDS |
| TGTACATTACCGCTTTGTTT+TGG | 0.388601 | 6_4:-82447403 | Msa0999900:CDS |
| CACAAATATATAGAGTGCTT+CGG | 0.393426 | 6_4:+82447527 | None:intergenic |
| ATTTCGAAACGGCGATAAAT+GGG | 0.393829 | 6_4:+82449777 | None:intergenic |
| TCTTGCCACTCAGCCCCATA+TGG | 0.400551 | 6_4:+82447585 | None:intergenic |
| TATCGCCGTTTCGAAATTAA+CGG | 0.406306 | 6_4:-82449771 | Msa0999900:intron |
| CGTGTCCAGGGGAAAGGATT+GGG | 0.426522 | 6_4:-82447333 | Msa0999900:CDS |
| CATCTGTTGTTACAATCTAA+TGG | 0.430132 | 6_4:+82446042 | None:intergenic |
| ATCCTTAAGTATTGATAAGA+AGG | 0.433255 | 6_4:+82445928 | None:intergenic |
| CAAAGCAGCATATAGCATAA+AGG | 0.436019 | 6_4:-82449817 | Msa0999900:CDS |
| TCTTCTTGACAACTATTTGA+AGG | 0.440325 | 6_4:+82447447 | None:intergenic |
| ACAGCTCGAGCCTCGTGTCC+AGG | 0.444598 | 6_4:-82447346 | Msa0999900:CDS |
| TGTAACAACAGATGATATCT+TGG | 0.444908 | 6_4:-82446033 | Msa0999900:three_prime_UTR |
| ACTCTATATATTTGTGAATG+AGG | 0.449192 | 6_4:-82447520 | Msa0999900:CDS |
| AAAGGTGAAGCGTATAGAAA+TGG | 0.455948 | 6_4:-82447556 | Msa0999900:CDS |
| CTCCATTCATCTATAACTGT+TGG | 0.462295 | 6_4:-82445972 | Msa0999900:three_prime_UTR |
| GCTTTCCCAATCCTTTCCCC+TGG | 0.468580 | 6_4:+82447328 | None:intergenic |
| AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6_4:-82447319 | Msa0999900:CDS |
| GGCGTTGTTGTGAGTTGCAT+TGG | 0.483691 | 6_4:+82449984 | None:intergenic |
| CTCTCAGTGTGTTTAACGTC+AGG | 0.484898 | 6_4:-82448423 | Msa0999900:CDS |
| ATATATACAGAGACTTCTTA+AGG | 0.487032 | 6_4:-82448367 | Msa0999900:intron |
| TTAACATGGAAGGGCCATAT+GGG | 0.490128 | 6_4:-82447599 | Msa0999900:CDS |
| CAGCTCGAGCCTCGTGTCCA+GGG | 0.491833 | 6_4:-82447345 | Msa0999900:CDS |
| GAAGATAGTGGTCCCTTGGT+TGG | 0.492453 | 6_4:-82447429 | Msa0999900:CDS |
| ACAAATATATAGAGTGCTTC+GGG | 0.494543 | 6_4:+82447528 | None:intergenic |
| ATCCAACAGTTATAGATGAA+TGG | 0.495784 | 6_4:+82445970 | None:intergenic |
| TATTGAGCTTATCGCCCAAA+AGG | 0.500241 | 6_4:-82447292 | Msa0999900:intron |
| CATTTCTTGTAGAACTGCAT+GGG | 0.509580 | 6_4:-82447037 | Msa0999900:intron |
| TCAAGAAGATAGTGGTCCCT+TGG | 0.520454 | 6_4:-82447433 | Msa0999900:CDS |
| TCGTGTCCAGGGGAAAGGAT+TGG | 0.525244 | 6_4:-82447334 | Msa0999900:CDS |
| CTTCTTGACAACTATTTGAA+GGG | 0.527798 | 6_4:+82447448 | None:intergenic |
| ACATTTCTTGTAGAACTGCA+TGG | 0.529239 | 6_4:-82447038 | Msa0999900:intron |
| ATCTACAGCTTAACATGGAA+GGG | 0.529467 | 6_4:-82447608 | Msa0999900:intron |
| GAGCCTCGTGTCCAGGGGAA+AGG | 0.535185 | 6_4:-82447339 | Msa0999900:CDS |
| AATCTACAGCTTAACATGGA+AGG | 0.544882 | 6_4:-82447609 | Msa0999900:intron |
| TATATATTGTTTAACAGGAG+AGG | 0.556533 | 6_4:+82448383 | None:intergenic |
| TGAGTGGCAAGAGGAAGAAA+AGG | 0.556815 | 6_4:-82447574 | Msa0999900:CDS |
| ACCTTCTAAAGTTTATCCAA+TGG | 0.559757 | 6_4:-82446219 | Msa0999900:intron |
| CAATCTAATGGTGCAGTGAG+TGG | 0.567174 | 6_4:+82446054 | None:intergenic |
| TGTGAGTTGCATTGGTTCCA+CGG | 0.567819 | 6_4:+82449992 | None:intergenic |
| AGTTACCGTTAATTTCGAAA+CGG | 0.568091 | 6_4:+82449766 | None:intergenic |
| ACGGCGATAAATGGGAAAAG+AGG | 0.568566 | 6_4:+82449785 | None:intergenic |
| AATAGTTGTCAAGAAGATAG+TGG | 0.578216 | 6_4:-82447441 | Msa0999900:CDS |
| TAACCTTCTCTCTGTTACGA+CGG | 0.587012 | 6_4:+82449963 | None:intergenic |
| AGAAGGGTCAACAAGAATGC+GGG | 0.588055 | 6_4:+82445945 | None:intergenic |
| TGTAAAACCAGCAATGAACT+CGG | 0.592834 | 6_4:-82450031 | Msa0999900:exon |
| AATCCTTTCCCCTGGACACG+AGG | 0.597062 | 6_4:+82447336 | None:intergenic |
| CATTGGTTCCACGGTCACGT+TGG | 0.600954 | 6_4:+82450001 | None:intergenic |
| GTGTGTTTAACGTCAGGACA+TGG | 0.610060 | 6_4:-82448417 | Msa0999900:CDS |
| AGCTCGAGCCTCGTGTCCAG+GGG | 0.623716 | 6_4:-82447344 | Msa0999900:CDS |
| AGTTCATACACATAAAGTAC+CGG | 0.630714 | 6_4:+82447369 | None:intergenic |
| TCCTTAAGTATTGATAAGAA+GGG | 0.634915 | 6_4:+82445929 | None:intergenic |
| AAGGGCCATATGGGGCTGAG+TGG | 0.635636 | 6_4:-82447590 | Msa0999900:CDS |
| GAGACGCTCCAACGTGACCG+TGG | 0.649093 | 6_4:-82450009 | Msa0999900:CDS |
| ATATGGGGCTGAGTGGCAAG+AGG | 0.653218 | 6_4:-82447583 | Msa0999900:CDS |
| TCTAAATCTACAGCTTAACA+TGG | 0.653227 | 6_4:-82447613 | Msa0999900:intron |
| TAACATGGAAGGGCCATATG+GGG | 0.654689 | 6_4:-82447598 | Msa0999900:CDS |
| AAGAAGGGTCAACAAGAATG+CGG | 0.661593 | 6_4:+82445944 | None:intergenic |
| ACGCCGTCGTAACAGAGAGA+AGG | 0.663934 | 6_4:-82449966 | Msa0999900:CDS |
| ATAAACTTTAGAAGGTGATG+TGG | 0.664725 | 6_4:+82446226 | None:intergenic |
| TAATGTACAAATCCAACCAA+GGG | 0.669573 | 6_4:+82447417 | None:intergenic |
| GTAATGTACAAATCCAACCA+AGG | 0.669580 | 6_4:+82447416 | None:intergenic |
| GATAAATGGGAAAAGAGGCG+AGG | 0.694688 | 6_4:+82449790 | None:intergenic |
| CCTCTTCTTCCAAAACAAAG+CGG | 0.723548 | 6_4:+82447394 | None:intergenic |
| GAAGACAACATTGTTCACTG+AGG | 0.772166 | 6_4:-82447475 | Msa0999900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATACAATTAATTAATA+AGG | + | chr6_4:82449116-82449135 | None:intergenic | 10.0% |
| !!! | ATTATAGTCTTAGAAATTAT+AGG | + | chr6_4:82447386-82447405 | None:intergenic | 15.0% |
| !! | TTAATATTTCAACATGATTA+TGG | - | chr6_4:82447411-82447430 | Msa0999900:CDS | 15.0% |
| !! | TAAACAAATTACAATTATAC+TGG | - | chr6_4:82447680-82447699 | Msa0999900:intron | 15.0% |
| !! | CATATCATTAACATAAAAAA+GGG | + | chr6_4:82448259-82448278 | None:intergenic | 15.0% |
| !! | ATAGAATATAGTTATATATG+TGG | + | chr6_4:82449245-82449264 | None:intergenic | 15.0% |
| !! | TGTAATAGACTTATATATAA+GGG | - | chr6_4:82449266-82449285 | Msa0999900:intron | 15.0% |
| !! | ATTCTCATAATAAAAAGTTA+AGG | - | chr6_4:82449465-82449484 | Msa0999900:intron | 15.0% |
| !! | TTCATAATTCTCATAATATT+TGG | - | chr6_4:82449550-82449569 | Msa0999900:intron | 15.0% |
| !! | AATGCAGTTAAATTAGTTAT+AGG | - | chr6_4:82446214-82446233 | Msa0999900:intron | 20.0% |
| !! | ATTAGTTATAGGATTATGAT+CGG | - | chr6_4:82446225-82446244 | Msa0999900:CDS | 20.0% |
| !! | TTCTTTCAATTAAGACAATA+AGG | - | chr6_4:82446974-82446993 | Msa0999900:CDS | 20.0% |
| !! | TCTTTCAATTAAGACAATAA+GGG | - | chr6_4:82446975-82446994 | Msa0999900:CDS | 20.0% |
| !!! | AAGTTTGTTTATTGAATTAG+CGG | + | chr6_4:82447223-82447242 | None:intergenic | 20.0% |
| !!! | TTTTTCATTTGTTTATCATG+AGG | - | chr6_4:82448132-82448151 | Msa0999900:intron | 20.0% |
| !!! | TTTTCATTTGTTTATCATGA+GGG | - | chr6_4:82448133-82448152 | Msa0999900:intron | 20.0% |
| !! | TGATAGTATCAACAAAAATA+AGG | + | chr6_4:82448218-82448237 | None:intergenic | 20.0% |
| !! | TTGTTGATACTATCATAAAT+CGG | - | chr6_4:82448223-82448242 | Msa0999900:intron | 20.0% |
| !! | GCATATCATTAACATAAAAA+AGG | + | chr6_4:82448260-82448279 | None:intergenic | 20.0% |
| !!! | CAATTTATTGACTTATTTAC+CGG | - | chr6_4:82448833-82448852 | Msa0999900:intron | 20.0% |
| !!! | ATTTTTACACAAGTAAACTA+AGG | - | chr6_4:82448971-82448990 | Msa0999900:intron | 20.0% |
| !!! | ATATTTTATGGAATGCATTA+AGG | + | chr6_4:82449140-82449159 | None:intergenic | 20.0% |
| !!! | AAGCAAACACAAATATTTTA+TGG | + | chr6_4:82449152-82449171 | None:intergenic | 20.0% |
| !! | GTGTAATAGACTTATATATA+AGG | - | chr6_4:82449265-82449284 | Msa0999900:intron | 20.0% |
| !! | GAATTATGAAAGAAGAAAAT+AGG | + | chr6_4:82449540-82449559 | None:intergenic | 20.0% |
| !! | GAAAAATCTAGAAAGTAATT+AGG | + | chr6_4:82449607-82449626 | None:intergenic | 20.0% |
| !!! | TTTCATAACACTTATGATTT+TGG | + | chr6_4:82449761-82449780 | None:intergenic | 20.0% |
| !!! | AATGGAGATTTAAAATTAAC+TGG | + | chr6_4:82449956-82449975 | None:intergenic | 20.0% |
| !! | ATCTACTATCTTTCTTATAT+TGG | - | chr6_4:82450050-82450069 | Msa0999900:five_prime_UTR | 20.0% |
| ! | CAGAAGTTAGTTACAAATTA+AGG | - | chr6_4:82446267-82446286 | Msa0999900:intron | 25.0% |
| !!! | GTTGTTTTCATAAGCTATTT+TGG | - | chr6_4:82446612-82446631 | Msa0999900:intron | 25.0% |
| ! | ATTTATTTGAGCTTATCTAC+TGG | + | chr6_4:82446714-82446733 | None:intergenic | 25.0% |
| ! | TAGTGTTTGGTAAAAAATAG+CGG | - | chr6_4:82446761-82446780 | Msa0999900:intron | 25.0% |
| !! | CTTATTGAATTTGAAGTGTT+TGG | - | chr6_4:82446838-82446857 | Msa0999900:intron | 25.0% |
| !! | ATTTAGACACTCATCATTTT+AGG | + | chr6_4:82447179-82447198 | None:intergenic | 25.0% |
| ! | TAACCACATTACTAAATTAC+AGG | - | chr6_4:82447342-82447361 | Msa0999900:CDS | 25.0% |
| ! | TATATATTGTTTAACAGGAG+AGG | + | chr6_4:82447561-82447580 | None:intergenic | 25.0% |
| ! | CTCTGTATATATTGTTTAAC+AGG | + | chr6_4:82447566-82447585 | None:intergenic | 25.0% |
| ! | ATATATACAGAGACTTCTTA+AGG | - | chr6_4:82447574-82447593 | Msa0999900:CDS | 25.0% |
| ! | TAAGTAACTCTAGTATTGTT+TGG | + | chr6_4:82447641-82447660 | None:intergenic | 25.0% |
| ! | AATAGCAATCATGAACAAAA+GGG | + | chr6_4:82448026-82448045 | None:intergenic | 25.0% |
| ! | AAATAGCAATCATGAACAAA+AGG | + | chr6_4:82448027-82448046 | None:intergenic | 25.0% |
| !!! | TTTTGTTCATGATTGCTATT+TGG | - | chr6_4:82448026-82448045 | Msa0999900:intron | 25.0% |
| !! | TTACAATGAAGATGCATTTT+TGG | + | chr6_4:82448065-82448084 | None:intergenic | 25.0% |
| ! | TAGTATCAACAAAAATAAGG+CGG | + | chr6_4:82448215-82448234 | None:intergenic | 25.0% |
| ! | TTTCAATGAATAAGCTAACA+CGG | + | chr6_4:82448283-82448302 | None:intergenic | 25.0% |
| !! | TGTTAGCTTATTCATTGAAA+TGG | - | chr6_4:82448283-82448302 | Msa0999900:intron | 25.0% |
| !! | GTTAGCTTATTCATTGAAAT+GGG | - | chr6_4:82448284-82448303 | Msa0999900:intron | 25.0% |
| ! | ACTCTATATATTTGTGAATG+AGG | - | chr6_4:82448421-82448440 | Msa0999900:CDS | 25.0% |
| ! | TGTAAAAATTCATAGCTGAT+AGG | + | chr6_4:82448960-82448979 | None:intergenic | 25.0% |
| ! | AGCGATAAAAAAATCAATGA+TGG | + | chr6_4:82449018-82449037 | None:intergenic | 25.0% |
| !! | TCTTTTTGTAGACATATATG+CGG | + | chr6_4:82449194-82449213 | None:intergenic | 25.0% |
| ! | ACGAAGACTAAACATAAAAA+GGG | + | chr6_4:82449650-82449669 | None:intergenic | 25.0% |
| ! | AACGAAGACTAAACATAAAA+AGG | + | chr6_4:82449651-82449670 | None:intergenic | 25.0% |
| !! | ATAACACTTATGATTTTGGA+GGG | + | chr6_4:82449757-82449776 | None:intergenic | 25.0% |
| !!! | AACTGGTTCATTTTTAAACT+TGG | + | chr6_4:82449939-82449958 | None:intergenic | 25.0% |
| !!! | TCCTTAAGTATTGATAAGAA+GGG | + | chr6_4:82450015-82450034 | None:intergenic | 25.0% |
| !!! | ATCCTTAAGTATTGATAAGA+AGG | + | chr6_4:82450016-82450035 | None:intergenic | 25.0% |
| AGTTACCGTTAATTTCGAAA+CGG | + | chr6_4:82446178-82446197 | None:intergenic | 30.0% | |
| TTACAAATTAAGGACCTGTT+TGG | - | chr6_4:82446277-82446296 | Msa0999900:intron | 30.0% | |
| TCAAATAAACCAATCCAAAC+AGG | + | chr6_4:82446294-82446313 | None:intergenic | 30.0% | |
| ! | AAGCTATATTGGAGTACTTA+TGG | + | chr6_4:82446378-82446397 | None:intergenic | 30.0% |
| AAGTACTCCAATATAGCTTA+CGG | - | chr6_4:82446379-82446398 | Msa0999900:intron | 30.0% | |
| TGTGATATAAGCTGCAAATA+AGG | - | chr6_4:82446490-82446509 | Msa0999900:intron | 30.0% | |
| AAGCACTTATGATATTGCTT+GGG | + | chr6_4:82446688-82446707 | None:intergenic | 30.0% | |
| TAAGCACTTATGATATTGCT+TGG | + | chr6_4:82446689-82446708 | None:intergenic | 30.0% | |
| CCTTATAAGCTAACTAATAG+CGG | - | chr6_4:82446787-82446806 | Msa0999900:intron | 30.0% | |
| CTATAAGCTCAAATACTACT+TGG | - | chr6_4:82447029-82447048 | Msa0999900:intron | 30.0% | |
| !! | AGTTTCTAGCATATAACCAT+TGG | + | chr6_4:82447117-82447136 | None:intergenic | 30.0% |
| ! | CAAGTTTTCCCCAAAAATTT+AGG | - | chr6_4:82447302-82447321 | Msa0999900:CDS | 30.0% |
| TAATGTGGTTAGTACAAGTT+GGG | + | chr6_4:82447333-82447352 | None:intergenic | 30.0% | |
| ACTCCTGTAATTTAGTAATG+TGG | + | chr6_4:82447348-82447367 | None:intergenic | 30.0% | |
| CTGGAAATAAGGTCAAAATT+AGG | + | chr6_4:82447496-82447515 | None:intergenic | 30.0% | |
| !! | CTAATTTTGACCTTATTTCC+AGG | - | chr6_4:82447494-82447513 | Msa0999900:CDS | 30.0% |
| !! | ACAATTATACTGGTTCAGTA+TGG | - | chr6_4:82447690-82447709 | Msa0999900:intron | 30.0% |
| TGTAGTTAATAATGCAATGC+TGG | + | chr6_4:82447925-82447944 | None:intergenic | 30.0% | |
| TTCAATGAATAAGCTAACAC+GGG | + | chr6_4:82448282-82448301 | None:intergenic | 30.0% | |
| TCTAAATCTACAGCTTAACA+TGG | - | chr6_4:82448328-82448347 | Msa0999900:intron | 30.0% | |
| ! | ACAAATATATAGAGTGCTTC+GGG | + | chr6_4:82448416-82448435 | None:intergenic | 30.0% |
| ! | CACAAATATATAGAGTGCTT+CGG | + | chr6_4:82448417-82448436 | None:intergenic | 30.0% |
| CTTCTTGACAACTATTTGAA+GGG | + | chr6_4:82448496-82448515 | None:intergenic | 30.0% | |
| TCTTCTTGACAACTATTTGA+AGG | + | chr6_4:82448497-82448516 | None:intergenic | 30.0% | |
| AATAGTTGTCAAGAAGATAG+TGG | - | chr6_4:82448500-82448519 | Msa0999900:intron | 30.0% | |
| TAATGTACAAATCCAACCAA+GGG | + | chr6_4:82448527-82448546 | None:intergenic | 30.0% | |
| AGTTCATACACATAAAGTAC+CGG | + | chr6_4:82448575-82448594 | None:intergenic | 30.0% | |
| GAATTATTGCTATGTTGCAA+AGG | - | chr6_4:82448719-82448738 | Msa0999900:intron | 30.0% | |
| AGGAAAAGATGATGAATTGT+TGG | - | chr6_4:82448758-82448777 | Msa0999900:intron | 30.0% | |
| GTTTAATGACGCATCTAATA+TGG | - | chr6_4:82448863-82448882 | Msa0999900:intron | 30.0% | |
| ! | TGATAGGTTCATCTTTTGAA+CGG | + | chr6_4:82448944-82448963 | None:intergenic | 30.0% |
| TCAAGTTTGATATGAATGAG+AGG | - | chr6_4:82449053-82449072 | Msa0999900:intron | 30.0% | |
| CAAGTTTGATATGAATGAGA+GGG | - | chr6_4:82449054-82449073 | Msa0999900:intron | 30.0% | |
| TAATAATGATTGACATGTCG+AGG | + | chr6_4:82449330-82449349 | None:intergenic | 30.0% | |
| AAAAAGTTAAGGATCTTAGC+AGG | - | chr6_4:82449476-82449495 | Msa0999900:intron | 30.0% | |
| ATAATATTTGGATTTAGCCC+AGG | - | chr6_4:82449562-82449581 | Msa0999900:intron | 30.0% | |
| GATATCTTGATAGATAACCT+GGG | + | chr6_4:82449582-82449601 | None:intergenic | 30.0% | |
| TGATATCTTGATAGATAACC+TGG | + | chr6_4:82449583-82449602 | None:intergenic | 30.0% | |
| AGACTAAACATAAAAAGGGA+GGG | + | chr6_4:82449646-82449665 | None:intergenic | 30.0% | |
| AAGACTAAACATAAAAAGGG+AGG | + | chr6_4:82449647-82449666 | None:intergenic | 30.0% | |
| !! | TTTAGTCTTCGTTTTGTTGA+CGG | - | chr6_4:82449658-82449677 | Msa0999900:intron | 30.0% |
| ! | ATAAACTTTAGAAGGTGATG+TGG | + | chr6_4:82449718-82449737 | None:intergenic | 30.0% |
| !! | ACCTTCTAAAGTTTATCCAA+TGG | - | chr6_4:82449722-82449741 | Msa0999900:intron | 30.0% |
| ACCATTGGATAAACTTTAGA+AGG | + | chr6_4:82449726-82449745 | None:intergenic | 30.0% | |
| !! | TAACACTTATGATTTTGGAG+GGG | + | chr6_4:82449756-82449775 | None:intergenic | 30.0% |
| ! | CATAACACTTATGATTTTGG+AGG | + | chr6_4:82449758-82449777 | None:intergenic | 30.0% |
| !!! | CGAAGCTAAAACTATTTTTG+AGG | - | chr6_4:82449860-82449879 | Msa0999900:intron | 30.0% |
| CATCTGTTGTTACAATCTAA+TGG | + | chr6_4:82449902-82449921 | None:intergenic | 30.0% | |
| TGTAACAACAGATGATATCT+TGG | - | chr6_4:82449908-82449927 | Msa0999900:intron | 30.0% | |
| ATCCAACAGTTATAGATGAA+TGG | + | chr6_4:82449974-82449993 | None:intergenic | 30.0% | |
| ACCCTTCTTATCAATACTTA+AGG | - | chr6_4:82450011-82450030 | Msa0999900:CDS | 30.0% | |
| ! | GAAAGATAGTAGATTTTGCA+AGG | + | chr6_4:82450044-82450063 | None:intergenic | 30.0% |
| TGTAAAACCAGCAATGAACT+CGG | - | chr6_4:82445910-82445929 | Msa0999900:three_prime_UTR | 35.0% | |
| ATTCAAAAAACTCGCGAATG+AGG | + | chr6_4:82446043-82446062 | None:intergenic | 35.0% | |
| CAAAGCAGCATATAGCATAA+AGG | - | chr6_4:82446124-82446143 | Msa0999900:CDS | 35.0% | |
| ATTTCGAAACGGCGATAAAT+GGG | + | chr6_4:82446167-82446186 | None:intergenic | 35.0% | |
| AATTTCGAAACGGCGATAAA+TGG | + | chr6_4:82446168-82446187 | None:intergenic | 35.0% | |
| TATCGCCGTTTCGAAATTAA+CGG | - | chr6_4:82446170-82446189 | Msa0999900:intron | 35.0% | |
| AATTAAGGACCTGTTTGGAT+TGG | - | chr6_4:82446282-82446301 | Msa0999900:intron | 35.0% | |
| !! | TGGATTGGTTTATTTGAGCT+TGG | - | chr6_4:82446297-82446316 | Msa0999900:intron | 35.0% |
| ! | GTTGTTTCCGTAAGCTATAT+TGG | + | chr6_4:82446389-82446408 | None:intergenic | 35.0% |
| ATAAGCTGTTTATCCAGACA+GGG | + | chr6_4:82446540-82446559 | None:intergenic | 35.0% | |
| AATAAGCTGTTTATCCAGAC+AGG | + | chr6_4:82446541-82446560 | None:intergenic | 35.0% | |
| CAAACACTAACAAAGCCTAA+TGG | + | chr6_4:82446750-82446769 | None:intergenic | 35.0% | |
| !! | CATTAGGCTTTGTTAGTGTT+TGG | - | chr6_4:82446748-82446767 | Msa0999900:intron | 35.0% |
| ! | CCGCTATTAGTTAGCTTATA+AGG | + | chr6_4:82446790-82446809 | None:intergenic | 35.0% |
| ACCAAACTGCTAACTTATAG+CGG | + | chr6_4:82447142-82447161 | None:intergenic | 35.0% | |
| ! | TGGGTGTAGCCTAAATTTTT+GGG | + | chr6_4:82447314-82447333 | None:intergenic | 35.0% |
| ! | TTGGGTGTAGCCTAAATTTT+TGG | + | chr6_4:82447315-82447334 | None:intergenic | 35.0% |
| GTAATGTGGTTAGTACAAGT+TGG | + | chr6_4:82447334-82447353 | None:intergenic | 35.0% | |
| TTCAGTATGGCTCAAATTCA+TGG | - | chr6_4:82447703-82447722 | Msa0999900:intron | 35.0% | |
| TCGTGATAGACAATGGAATT+CGG | + | chr6_4:82447985-82448004 | None:intergenic | 35.0% | |
| ATATCTCTCGTGATAGACAA+TGG | + | chr6_4:82447992-82448011 | None:intergenic | 35.0% | |
| AGCTTATTCATTGAAATGGG+TGG | - | chr6_4:82448287-82448306 | Msa0999900:intron | 35.0% | |
| GCTTATTCATTGAAATGGGT+GGG | - | chr6_4:82448288-82448307 | Msa0999900:intron | 35.0% | |
| AATCTACAGCTTAACATGGA+AGG | - | chr6_4:82448332-82448351 | Msa0999900:intron | 35.0% | |
| ATCTACAGCTTAACATGGAA+GGG | - | chr6_4:82448333-82448352 | Msa0999900:intron | 35.0% | |
| AAAGGTGAAGCGTATAGAAA+TGG | - | chr6_4:82448385-82448404 | Msa0999900:CDS | 35.0% | |
| GTAATGTACAAATCCAACCA+AGG | + | chr6_4:82448528-82448547 | None:intergenic | 35.0% | |
| !!! | TGTACATTACCGCTTTGTTT+TGG | - | chr6_4:82448538-82448557 | Msa0999900:intron | 35.0% |
| ! | AAAACACTTGAGCACCTTTT+GGG | + | chr6_4:82448666-82448685 | None:intergenic | 35.0% |
| ! | AAAAACACTTGAGCACCTTT+TGG | + | chr6_4:82448667-82448686 | None:intergenic | 35.0% |
| TGTTGGATTCGTTATCTTTG+AGG | - | chr6_4:82448775-82448794 | Msa0999900:intron | 35.0% | |
| ACATTTCTTGTAGAACTGCA+TGG | - | chr6_4:82448903-82448922 | Msa0999900:intron | 35.0% | |
| CATTTCTTGTAGAACTGCAT+GGG | - | chr6_4:82448904-82448923 | Msa0999900:intron | 35.0% | |
| !! | ATTTGTGTTTGCTTTTGAGC+AGG | - | chr6_4:82449158-82449177 | Msa0999900:intron | 35.0% |
| CAAATAACTACGTGATGCTA+GGG | + | chr6_4:82449300-82449319 | None:intergenic | 35.0% | |
| GACTAAACATAAAAAGGGAG+GGG | + | chr6_4:82449645-82449664 | None:intergenic | 35.0% | |
| !! | AACACTTATGATTTTGGAGG+GGG | + | chr6_4:82449755-82449774 | None:intergenic | 35.0% |
| TTTCTGTTCTCATATGCAGA+TGG | - | chr6_4:82449800-82449819 | Msa0999900:CDS | 35.0% | |
| CTCCATTCATCTATAACTGT+TGG | - | chr6_4:82449969-82449988 | Msa0999900:CDS | 35.0% | |
| TAACCTTCTCTCTGTTACGA+CGG | + | chr6_4:82445981-82446000 | None:intergenic | 40.0% | |
| CTTTGCGAGAAGCTGAAAAA+CGG | + | chr6_4:82446081-82446100 | None:intergenic | 40.0% | |
| TTTATCCAGACAGGGACTTT+GGG | + | chr6_4:82446532-82446551 | None:intergenic | 40.0% | |
| ATCAATCCAAGCAGACCATT+AGG | - | chr6_4:82446732-82446751 | Msa0999900:intron | 40.0% | |
| TCCGCTATAAGTTAGCAGTT+TGG | - | chr6_4:82447138-82447157 | Msa0999900:intron | 40.0% | |
| !! | TCATCATTTTAGGCTCTGGT+TGG | + | chr6_4:82447169-82447188 | None:intergenic | 40.0% |
| ! | ACACTCATCATTTTAGGCTC+TGG | + | chr6_4:82447173-82447192 | None:intergenic | 40.0% |
| ! | GGGTGTAGCCTAAATTTTTG+GGG | + | chr6_4:82447313-82447332 | None:intergenic | 40.0% |
| GGCTCAAATTCATGGATAAG+TGG | - | chr6_4:82447711-82447730 | Msa0999900:intron | 40.0% | |
| GATCTATAAGTGCAACGTAG+TGG | - | chr6_4:82447758-82447777 | Msa0999900:intron | 40.0% | |
| TAGGAATGATCCAAGCTCAA+AGG | + | chr6_4:82447798-82447817 | None:intergenic | 40.0% | |
| TTTGAGCTTGGATCATTCCT+AGG | - | chr6_4:82447797-82447816 | Msa0999900:intron | 40.0% | |
| TTGAGCTTGGATCATTCCTA+GGG | - | chr6_4:82447798-82447817 | Msa0999900:intron | 40.0% | |
| TAACCCCTAAACTGTACCAT+GGG | + | chr6_4:82447851-82447870 | None:intergenic | 40.0% | |
| TTAACCCCTAAACTGTACCA+TGG | + | chr6_4:82447852-82447871 | None:intergenic | 40.0% | |
| TAATGCAATGCTGGAAGCTA+TGG | + | chr6_4:82447916-82447935 | None:intergenic | 40.0% | |
| ! | CGTTCTGTTGTTTGAGATGT+AGG | - | chr6_4:82447950-82447969 | Msa0999900:intron | 40.0% |
| ! | GTTTGAGATGTAGGCACAAT+TGG | - | chr6_4:82447959-82447978 | Msa0999900:intron | 40.0% |
| TTTCAAGGCAAAAACCTTGC+CGG | + | chr6_4:82448173-82448192 | None:intergenic | 40.0% | |
| TTAACATGGAAGGGCCATAT+GGG | - | chr6_4:82448342-82448361 | Msa0999900:intron | 40.0% | |
| GAAGACAACATTGTTCACTG+AGG | - | chr6_4:82448466-82448485 | Msa0999900:intron | 40.0% | |
| CCTCTTCTTCCAAAACAAAG+CGG | + | chr6_4:82448550-82448569 | None:intergenic | 40.0% | |
| !!! | TGTTTTGGAAGAAGAGGTAC+CGG | - | chr6_4:82448553-82448572 | Msa0999900:intron | 40.0% |
| AGGATTGGGAAAGCTTCTAA+TGG | - | chr6_4:82448622-82448641 | Msa0999900:intron | 40.0% | |
| TATTGAGCTTATCGCCCAAA+AGG | - | chr6_4:82448649-82448668 | Msa0999900:intron | 40.0% | |
| GCGTCATTAAACTCAAAAGC+CGG | + | chr6_4:82448855-82448874 | None:intergenic | 40.0% | |
| AAGGCTTATACGAGCAGTTA+GGG | + | chr6_4:82449097-82449116 | None:intergenic | 40.0% | |
| TAAGGCTTATACGAGCAGTT+AGG | + | chr6_4:82449098-82449117 | None:intergenic | 40.0% | |
| TGTAGACATATATGCGGTTC+AGG | + | chr6_4:82449188-82449207 | None:intergenic | 40.0% | |
| GCAAATAACTACGTGATGCT+AGG | + | chr6_4:82449301-82449320 | None:intergenic | 40.0% | |
| !! | ACACTTATGATTTTGGAGGG+GGG | + | chr6_4:82449754-82449773 | None:intergenic | 40.0% |
| AAGAAGGGTCAACAAGAATG+CGG | + | chr6_4:82450000-82450019 | None:intergenic | 40.0% | |
| !! | TGTGAGTTGCATTGGTTCCA+CGG | + | chr6_4:82445952-82445971 | None:intergenic | 45.0% |
| CGCGAATGAGGAAAGTTTAG+AGG | + | chr6_4:82446031-82446050 | None:intergenic | 45.0% | |
| GAGAAGCTGAAAAACGGAAC+GGG | + | chr6_4:82446075-82446094 | None:intergenic | 45.0% | |
| CGAGAAGCTGAAAAACGGAA+CGG | + | chr6_4:82446076-82446095 | None:intergenic | 45.0% | |
| GATAAATGGGAAAAGAGGCG+AGG | + | chr6_4:82446154-82446173 | None:intergenic | 45.0% | |
| ACGGCGATAAATGGGAAAAG+AGG | + | chr6_4:82446159-82446178 | None:intergenic | 45.0% | |
| ACAGGGACTTTGGGCATATT+TGG | + | chr6_4:82446523-82446542 | None:intergenic | 45.0% | |
| GTTTATCCAGACAGGGACTT+TGG | + | chr6_4:82446533-82446552 | None:intergenic | 45.0% | |
| ACAAAGCCTAATGGTCTGCT+TGG | + | chr6_4:82446741-82446760 | None:intergenic | 45.0% | |
| GATCGTGAGACAATGACCAA+TGG | - | chr6_4:82447098-82447117 | Msa0999900:intron | 45.0% | |
| CACTGAGAGACCTGGAAATA+AGG | + | chr6_4:82447507-82447526 | None:intergenic | 45.0% | |
| GTTAAACACACTGAGAGACC+TGG | + | chr6_4:82447515-82447534 | None:intergenic | 45.0% | |
| CTCTCAGTGTGTTTAACGTC+AGG | - | chr6_4:82447518-82447537 | Msa0999900:CDS | 45.0% | |
| GTGTGTTTAACGTCAGGACA+TGG | - | chr6_4:82447524-82447543 | Msa0999900:CDS | 45.0% | |
| AACCCCTAAACTGTACCATG+GGG | + | chr6_4:82447850-82447869 | None:intergenic | 45.0% | |
| TTTATCATGAGGGCAAGCCT+TGG | - | chr6_4:82448143-82448162 | Msa0999900:intron | 45.0% | |
| ! | GTTTTTGCCTTGAAACCTCG+TGG | - | chr6_4:82448178-82448197 | Msa0999900:intron | 45.0% |
| CTTAACATGGAAGGGCCATA+TGG | - | chr6_4:82448341-82448360 | Msa0999900:intron | 45.0% | |
| TAACATGGAAGGGCCATATG+GGG | - | chr6_4:82448343-82448362 | Msa0999900:intron | 45.0% | |
| TGAGTGGCAAGAGGAAGAAA+AGG | - | chr6_4:82448367-82448386 | Msa0999900:intron | 45.0% | |
| ! | TCAAGAAGATAGTGGTCCCT+TGG | - | chr6_4:82448508-82448527 | Msa0999900:intron | 45.0% |
| !!! | CCGCTTTGTTTTGGAAGAAG+AGG | - | chr6_4:82448547-82448566 | Msa0999900:intron | 45.0% |
| AAGGACACAGCTTGTAGTCT+AGG | - | chr6_4:82448738-82448757 | Msa0999900:intron | 45.0% | |
| CAATCTAATGGTGCAGTGAG+TGG | + | chr6_4:82449890-82449909 | None:intergenic | 45.0% | |
| AGAAGGGTCAACAAGAATGC+GGG | + | chr6_4:82449999-82450018 | None:intergenic | 45.0% | |
| GGCGTTGTTGTGAGTTGCAT+TGG | + | chr6_4:82445960-82445979 | None:intergenic | 50.0% | |
| ATATGCCCAAAGTCCCTGTC+TGG | - | chr6_4:82446524-82446543 | Msa0999900:intron | 50.0% | |
| !! | GTGCAACGTAGTGGATTGAG+AGG | - | chr6_4:82447767-82447786 | Msa0999900:intron | 50.0% |
| AGAGGTCATGCCTTTGAGCT+TGG | - | chr6_4:82447785-82447804 | Msa0999900:intron | 50.0% | |
| ATGCCCCCATGGTACAGTTT+AGG | - | chr6_4:82447843-82447862 | Msa0999900:intron | 50.0% | |
| TGCCCCCATGGTACAGTTTA+GGG | - | chr6_4:82447844-82447863 | Msa0999900:intron | 50.0% | |
| ACCCCTAAACTGTACCATGG+GGG | + | chr6_4:82447849-82447868 | None:intergenic | 50.0% | |
| GTGTGATCCACGAGGTTTCA+AGG | + | chr6_4:82448188-82448207 | None:intergenic | 50.0% | |
| ! | GAAGATAGTGGTCCCTTGGT+TGG | - | chr6_4:82448512-82448531 | Msa0999900:intron | 50.0% |
| AGCGTCTCCGAGTTCATTGC+TGG | + | chr6_4:82445920-82445939 | None:intergenic | 55.0% | |
| !! | CATTGGTTCCACGGTCACGT+TGG | + | chr6_4:82445943-82445962 | None:intergenic | 55.0% |
| ACGCCGTCGTAACAGAGAGA+AGG | - | chr6_4:82445975-82445994 | Msa0999900:three_prime_UTR | 55.0% | |
| ACTCGCTATGCTCGAGTGTC+TGG | + | chr6_4:82447737-82447756 | None:intergenic | 55.0% | |
| CTAGGGTTATGACGAGCGTG+CGG | - | chr6_4:82447815-82447834 | Msa0999900:intron | 55.0% | |
| TAGGGTTATGACGAGCGTGC+GGG | - | chr6_4:82447816-82447835 | Msa0999900:intron | 55.0% | |
| GCCCCCATGGTACAGTTTAG+GGG | - | chr6_4:82447845-82447864 | Msa0999900:intron | 55.0% | |
| AAAACCTTGCCGGTGTGCCA+AGG | + | chr6_4:82448163-82448182 | None:intergenic | 55.0% | |
| TCTTGCCACTCAGCCCCATA+TGG | + | chr6_4:82448359-82448378 | None:intergenic | 55.0% | |
| ATATGGGGCTGAGTGGCAAG+AGG | - | chr6_4:82448358-82448377 | Msa0999900:intron | 55.0% | |
| AATCCTTTCCCCTGGACACG+AGG | + | chr6_4:82448608-82448627 | None:intergenic | 55.0% | |
| TCGTGTCCAGGGGAAAGGAT+TGG | - | chr6_4:82448607-82448626 | Msa0999900:intron | 55.0% | |
| CGTGTCCAGGGGAAAGGATT+GGG | - | chr6_4:82448608-82448627 | Msa0999900:intron | 55.0% | |
| GCTTTCCCAATCCTTTCCCC+TGG | + | chr6_4:82448616-82448635 | None:intergenic | 55.0% | |
| ! | TGGAGGGGGGTACATACCAT+TGG | + | chr6_4:82449741-82449760 | None:intergenic | 55.0% |
| CGCACGCTCGTCATAACCCT+AGG | + | chr6_4:82447817-82447836 | None:intergenic | 60.0% | |
| AGGGTTATGACGAGCGTGCG+GGG | - | chr6_4:82447817-82447836 | Msa0999900:intron | 60.0% | |
| GCGGCAAAGTGTGATCCACG+AGG | + | chr6_4:82448196-82448215 | None:intergenic | 60.0% | |
| AAGGGCCATATGGGGCTGAG+TGG | - | chr6_4:82448351-82448370 | Msa0999900:intron | 60.0% | |
| GAGACGCTCCAACGTGACCG+TGG | - | chr6_4:82445932-82445951 | Msa0999900:three_prime_UTR | 65.0% | |
| GGGTTATGACGAGCGTGCGG+GGG | - | chr6_4:82447818-82447837 | Msa0999900:intron | 65.0% | |
| GAGGGCAAGCCTTGGCACAC+CGG | - | chr6_4:82448151-82448170 | Msa0999900:intron | 65.0% | |
| CAAGCCTTGGCACACCGGCA+AGG | - | chr6_4:82448156-82448175 | Msa0999900:intron | 65.0% | |
| ACAGCTCGAGCCTCGTGTCC+AGG | - | chr6_4:82448595-82448614 | Msa0999900:intron | 65.0% | |
| CAGCTCGAGCCTCGTGTCCA+GGG | - | chr6_4:82448596-82448615 | Msa0999900:intron | 65.0% | |
| AGCTCGAGCCTCGTGTCCAG+GGG | - | chr6_4:82448597-82448616 | Msa0999900:intron | 65.0% | |
| GAGCCTCGTGTCCAGGGGAA+AGG | - | chr6_4:82448602-82448621 | Msa0999900:intron | 65.0% | |
| GTGCGGGGGCAATGCCCCCA+TGG | - | chr6_4:82447832-82447851 | Msa0999900:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 82445881 | 82450082 | 82445881 | ID=Msa0999900;Name=Msa0999900 |
| chr6_4 | mRNA | 82445881 | 82450082 | 82445881 | ID=Msa0999900-mRNA-1;Parent=Msa0999900;Name=Msa0999900-mRNA-1;_AED=0.17;_eAED=0.17;_QI=42|1|1|1|1|1|7|177|269 |
| chr6_4 | exon | 82445881 | 82446144 | 82445881 | ID=Msa0999900-mRNA-1:exon:15868;Parent=Msa0999900-mRNA-1 |
| chr6_4 | exon | 82446220 | 82446262 | 82446220 | ID=Msa0999900-mRNA-1:exon:15867;Parent=Msa0999900-mRNA-1 |
| chr6_4 | exon | 82446971 | 82447047 | 82446971 | ID=Msa0999900-mRNA-1:exon:15866;Parent=Msa0999900-mRNA-1 |
| chr6_4 | exon | 82447293 | 82447622 | 82447293 | ID=Msa0999900-mRNA-1:exon:15865;Parent=Msa0999900-mRNA-1 |
| chr6_4 | exon | 82448368 | 82448447 | 82448368 | ID=Msa0999900-mRNA-1:exon:15864;Parent=Msa0999900-mRNA-1 |
| chr6_4 | exon | 82449772 | 82449874 | 82449772 | ID=Msa0999900-mRNA-1:exon:15863;Parent=Msa0999900-mRNA-1 |
| chr6_4 | exon | 82449951 | 82450082 | 82449951 | ID=Msa0999900-mRNA-1:exon:15862;Parent=Msa0999900-mRNA-1 |
| chr6_4 | five_prime_UTR | 82450041 | 82450082 | 82450041 | ID=Msa0999900-mRNA-1:five_prime_utr;Parent=Msa0999900-mRNA-1 |
| chr6_4 | CDS | 82449951 | 82450040 | 82449951 | ID=Msa0999900-mRNA-1:cds;Parent=Msa0999900-mRNA-1 |
| chr6_4 | CDS | 82449772 | 82449874 | 82449772 | ID=Msa0999900-mRNA-1:cds;Parent=Msa0999900-mRNA-1 |
| chr6_4 | CDS | 82448368 | 82448447 | 82448368 | ID=Msa0999900-mRNA-1:cds;Parent=Msa0999900-mRNA-1 |
| chr6_4 | CDS | 82447293 | 82447622 | 82447293 | ID=Msa0999900-mRNA-1:cds;Parent=Msa0999900-mRNA-1 |
| chr6_4 | CDS | 82446971 | 82447047 | 82446971 | ID=Msa0999900-mRNA-1:cds;Parent=Msa0999900-mRNA-1 |
| chr6_4 | CDS | 82446220 | 82446262 | 82446220 | ID=Msa0999900-mRNA-1:cds;Parent=Msa0999900-mRNA-1 |
| chr6_4 | CDS | 82446058 | 82446144 | 82446058 | ID=Msa0999900-mRNA-1:cds;Parent=Msa0999900-mRNA-1 |
| chr6_4 | three_prime_UTR | 82445881 | 82446057 | 82445881 | ID=Msa0999900-mRNA-1:three_prime_utr;Parent=Msa0999900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
