AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1001190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001190 MtrunA17_Chr6g0487491 93.385 257 9 1 1 249 1 257 2.99e-166 459
Msa1001190 MtrunA17_Chr3g0135311 81.034 116 22 0 1 116 1 116 1.82e-67 212
Msa1001190 MtrunA17_Chr5g0400821 74.790 119 30 0 1 119 1 119 3.41e-65 205
Msa1001190 MtrunA17_Chr4g0028311 77.311 119 27 0 1 119 1 119 4.40e-65 205
Msa1001190 MtrunA17_Chr1g0152011 55.080 187 65 3 1 168 1 187 4.51e-65 206
Msa1001190 MtrunA17_Chr1g0151941 47.809 251 110 5 1 243 1 238 3.23e-64 201
Msa1001190 MtrunA17_Chr7g0264641 70.400 125 37 0 1 125 1 125 4.85e-63 198
Msa1001190 MtrunA17_Chr2g0327351 62.346 162 53 2 1 154 1 162 2.24e-62 198
Msa1001190 MtrunA17_Chr4g0072751 78.378 111 24 0 1 111 1 111 3.79e-62 198
Msa1001190 MtrunA17_Chr4g0054391 76.364 110 26 0 1 110 1 110 1.32e-60 192
Msa1001190 MtrunA17_Chr1g0187761 57.931 145 60 1 1 145 1 144 9.35e-53 171
Msa1001190 MtrunA17_Chr7g0275911 62.069 116 43 1 1 116 1 115 9.13e-50 164
Msa1001190 MtrunA17_Chr3g0115821 61.017 118 45 1 1 118 1 117 1.67e-49 166
Msa1001190 MtrunA17_Chr7g0274581 49.390 164 80 2 1 162 1 163 2.60e-49 161
Msa1001190 MtrunA17_Chr4g0039971 61.864 118 44 1 1 118 2 118 3.57e-49 165
Msa1001190 MtrunA17_Chr8g0346561 58.400 125 51 1 1 125 1 124 4.11e-49 163
Msa1001190 MtrunA17_Chr4g0037141 48.171 164 81 3 1 163 1 161 4.25e-49 163
Msa1001190 MtrunA17_Chr8g0349261 59.664 119 47 1 1 118 1 119 4.66e-49 163
Msa1001190 MtrunA17_Chr7g0261281 53.061 147 61 2 1 147 1 139 5.13e-49 162
Msa1001190 MtrunA17_Chr5g0410961 61.017 118 45 1 1 118 1 117 7.38e-49 164
Msa1001190 MtrunA17_Chr6g0452271 63.559 118 42 1 1 118 1 117 8.00e-49 164
Msa1001190 MtrunA17_Chr7g0217221 59.091 132 51 2 1 132 1 129 8.54e-49 162
Msa1001190 MtrunA17_Chr1g0203411 62.069 116 43 1 1 116 1 115 9.28e-49 162
Msa1001190 MtrunA17_Chr3g0103281 64.655 116 40 1 1 116 1 115 1.80e-48 162
Msa1001190 MtrunA17_Chr4g0060721 57.031 128 54 1 1 128 2 128 1.71e-47 160
Msa1001190 MtrunA17_Chr7g0217741 60.345 116 45 1 1 116 1 115 2.49e-47 159
Msa1001190 MtrunA17_Chr2g0323411 60.169 118 46 1 1 118 1 117 2.64e-47 159
Msa1001190 MtrunA17_Chr1g0167691 58.475 118 48 1 1 118 1 117 2.69e-47 157
Msa1001190 MtrunA17_Chr1g0167661 58.475 118 48 1 1 118 1 117 1.08e-46 155
Msa1001190 MtrunA17_Chr4g0042671 61.207 116 44 1 1 116 1 115 1.15e-46 160
Msa1001190 MtrunA17_Chr4g0048511 59.664 119 46 2 1 118 1 118 2.11e-46 158
Msa1001190 MtrunA17_Chr3g0131121 47.500 160 76 2 1 160 1 152 3.97e-46 155
Msa1001190 MtrunA17_Chr4g0068061 59.483 116 46 1 1 116 1 115 4.26e-46 156
Msa1001190 MtrunA17_Chr6g0453471 59.483 116 46 1 1 116 1 115 5.27e-46 157
Msa1001190 MtrunA17_Chr8g0385321 58.621 116 47 1 1 116 1 115 7.48e-46 155
Msa1001190 MtrunA17_Chr7g0228891 60.345 116 45 1 1 116 1 115 1.68e-45 153
Msa1001190 MtrunA17_Chr1g0194951 59.483 116 46 1 1 116 1 115 2.42e-45 155
Msa1001190 MtrunA17_Chr2g0281071 57.983 119 48 2 1 118 1 118 2.66e-45 154
Msa1001190 MtrunA17_Chr7g0254411 59.483 116 46 1 1 116 1 115 4.16e-45 154
Msa1001190 MtrunA17_Chr3g0092401 56.693 127 54 1 1 127 2 127 4.60e-45 153
Msa1001190 MtrunA17_Chr4g0070611 57.759 116 48 1 1 116 1 115 4.74e-45 153
Msa1001190 MtrunA17_Chr5g0395281 59.322 118 47 1 1 118 1 117 5.42e-45 153
Msa1001190 MtrunA17_Chr4g0070641 57.759 116 48 1 1 116 1 115 5.62e-45 149
Msa1001190 MtrunA17_Chr1g0193371 58.621 116 47 1 1 116 1 115 1.31e-44 153
Msa1001190 MtrunA17_Chr7g0270891 60.345 116 45 1 1 116 1 115 1.85e-44 153
Msa1001190 MtrunA17_Chr3g0121241 55.263 114 50 1 5 118 35 147 2.68e-44 151
Msa1001190 MtrunA17_Chr4g0022901 58.824 119 47 2 1 118 1 118 4.58e-44 149
Msa1001190 MtrunA17_Chr5g0435101 55.172 116 51 1 3 118 2 116 9.32e-44 147
Msa1001190 MtrunA17_Chr1g0193801 58.621 116 47 1 1 116 1 115 9.53e-44 152
Msa1001190 MtrunA17_Chr4g0057031 56.780 118 50 1 1 118 1 117 9.70e-44 149
Msa1001190 MtrunA17_Chr6g0453211 61.261 111 42 1 1 111 1 110 9.73e-44 150
Msa1001190 MtrunA17_Chr8g0387421 57.759 116 48 1 1 116 1 115 9.88e-44 150
Msa1001190 MtrunA17_Chr2g0311221 61.818 110 41 1 2 111 4 112 1.61e-43 149
Msa1001190 MtrunA17_Chr4g0022931 58.974 117 46 2 1 116 1 116 3.79e-43 147
Msa1001190 MtrunA17_Chr4g0058631 55.932 118 51 1 1 118 1 117 6.57e-43 149
Msa1001190 MtrunA17_Chr4g0022911 57.143 119 49 2 1 118 1 118 8.91e-43 147
Msa1001190 MtrunA17_Chr2g0330041 43.684 190 87 4 1 185 1 175 1.76e-42 149
Msa1001190 MtrunA17_Chr5g0397231 57.658 111 46 1 1 111 1 110 2.17e-42 147
Msa1001190 MtrunA17_Chr3g0110351 56.034 116 50 1 1 116 1 115 2.93e-42 146
Msa1001190 MtrunA17_Chr5g0434571 56.034 116 50 1 1 116 37 151 5.34e-42 146
Msa1001190 MtrunA17_Chr7g0269831 38.710 217 107 4 1 204 1 204 5.46e-42 146
Msa1001190 MtrunA17_Chr3g0117091 56.780 118 50 1 1 118 1 117 7.17e-42 146
Msa1001190 MtrunA17_Chr2g0323351 45.752 153 74 2 1 153 1 144 1.36e-41 142
Msa1001190 MtrunA17_Chr8g0342541 56.780 118 50 1 1 118 1 117 1.40e-41 145
Msa1001190 MtrunA17_Chr1g0211161 41.206 199 109 4 3 197 4 198 2.38e-41 141
Msa1001190 MtrunA17_Chr4g0022891 57.018 114 48 1 1 114 1 113 3.22e-41 141
Msa1001190 MtrunA17_Chr8g0342481 54.622 119 54 0 1 119 1 119 4.43e-41 145
Msa1001190 MtrunA17_Chr2g0309911 57.143 119 49 2 1 119 1 117 4.69e-41 143
Msa1001190 MtrunA17_Chr7g0240821 40.191 209 100 6 16 201 5 211 4.76e-41 140
Msa1001190 MtrunA17_Chr8g0354661 55.046 109 48 1 12 120 37 144 7.30e-41 147
Msa1001190 MtrunA17_Chr7g0271241 59.091 110 44 1 1 110 1 109 7.86e-41 144
Msa1001190 MtrunA17_Chr8g0342521 49.645 141 63 2 1 134 1 140 1.09e-40 142
Msa1001190 MtrunA17_Chr6g0470971 47.917 144 73 2 4 147 6 147 1.26e-39 138
Msa1001190 MtrunA17_Chr4g0022881 53.043 115 53 1 1 115 1 114 1.72e-39 136
Msa1001190 MtrunA17_Chr1g0203441 53.846 117 52 2 1 116 1 116 6.43e-38 134
Msa1001190 MtrunA17_Chr3g0080861 53.211 109 50 1 12 120 37 144 6.53e-38 139
Msa1001190 MtrunA17_Chr4g0055981 41.765 170 77 3 9 157 52 220 4.33e-37 130
Msa1001190 MtrunA17_Chr5g0434931 56.481 108 46 1 12 119 35 141 4.73e-37 131
Msa1001190 MtrunA17_Chr8g0343831 52.586 116 50 2 1 116 1 111 1.44e-36 129
Msa1001190 MtrunA17_Chr4g0044421 51.282 117 55 2 3 118 2 117 1.57e-36 127
Msa1001190 MtrunA17_Chr3g0099131 50.450 111 54 1 10 120 39 148 2.01e-36 135
Msa1001190 MtrunA17_Chr5g0434911 53.097 113 52 1 7 119 16 127 4.03e-36 129
Msa1001190 MtrunA17_Chr1g0209661 53.211 109 50 1 8 116 23 130 5.50e-36 129
Msa1001190 MtrunA17_Chr5g0417821 53.271 107 49 1 12 118 7 112 8.77e-36 128
Msa1001190 MtrunA17_Chr2g0328771 51.724 116 55 1 12 127 20 134 1.09e-35 129
Msa1001190 MtrunA17_Chr6g0450101 48.837 129 63 2 1 127 1 128 1.58e-35 125
Msa1001190 MtrunA17_Chr3g0088461 54.128 109 49 1 8 116 18 125 1.60e-35 129
Msa1001190 MtrunA17_Chr1g0194301 53.211 109 50 1 8 116 29 136 1.68e-35 127
Msa1001190 MtrunA17_Chr7g0228231 55.769 104 45 1 12 115 14 116 5.28e-35 124
Msa1001190 MtrunA17_Chr4g0032401 53.774 106 48 1 11 116 16 120 9.18e-35 127
Msa1001190 MtrunA17_Chr5g0434831 53.271 107 49 1 12 118 7 112 1.72e-34 122
Msa1001190 MtrunA17_Chr1g0186061 50.450 111 54 1 6 116 14 123 1.73e-34 124
Msa1001190 MtrunA17_Chr7g0220341 54.545 110 47 2 12 119 25 133 2.39e-34 124
Msa1001190 MtrunA17_Chr7g0228991 54.630 108 48 1 12 119 29 135 8.01e-34 123
Msa1001190 MtrunA17_Chr1g0192411 47.500 120 62 1 1 120 1 119 2.61e-33 124
Msa1001190 MtrunA17_Chr1g0194291 43.137 153 83 3 2 153 11 160 3.12e-33 121
Msa1001190 MtrunA17_Chr2g0322521 50.893 112 54 1 9 120 26 136 6.34e-33 123
Msa1001190 MtrunA17_Chr1g0154031 50.926 108 52 1 12 119 76 182 1.00e-32 123
Msa1001190 MtrunA17_Chr8g0360111 53.922 102 46 1 12 113 25 125 1.69e-32 119
Msa1001190 MtrunA17_Chr1g0168661 52.885 104 48 1 13 116 22 124 1.70e-32 119
Msa1001190 MtrunA17_Chr5g0434841 51.402 107 51 1 12 118 20 125 2.24e-32 120
Msa1001190 MtrunA17_Chr4g0042611 57.303 89 37 1 1 89 1 88 5.78e-32 112
Msa1001190 MtrunA17_Chr5g0440781 40.260 154 84 4 12 158 12 164 2.15e-31 114
Msa1001190 MtrunA17_Chr2g0294811 54.839 93 41 1 1 93 1 92 4.20e-31 111
Msa1001190 MtrunA17_Chr8g0334881 49.541 109 53 2 8 115 6 113 5.50e-31 116
Msa1001190 MtrunA17_Chr5g0440761 40.523 153 83 4 13 158 13 164 6.04e-31 115
Msa1001190 MtrunA17_Chr5g0441141 40.260 154 84 4 12 158 12 164 9.17e-31 115
Msa1001190 MtrunA17_Chr1g0180391 51.429 105 50 1 12 116 19 122 1.10e-30 114
Msa1001190 MtrunA17_Chr5g0441131 48.182 110 55 2 12 120 9 117 6.25e-30 110
Msa1001190 MtrunA17_Chr4g0068921 48.031 127 63 2 8 134 20 143 1.16e-29 110
Msa1001190 MtrunA17_Chr2g0293911 52.778 108 50 1 8 115 20 126 1.97e-29 112
Msa1001190 MtrunA17_Chr2g0327821 46.296 108 57 1 9 116 3 109 2.23e-29 110
Msa1001190 MtrunA17_Chr7g0247131 63.514 74 27 0 43 116 8 81 2.82e-29 111
Msa1001190 MtrunA17_Chr4g0008551 50.909 110 51 3 11 120 36 142 2.56e-28 110
Msa1001190 MtrunA17_Chr4g0013361 45.872 109 57 2 8 115 6 113 5.42e-28 108
Msa1001190 MtrunA17_Chr8g0342461 54.444 90 41 0 1 90 1 90 1.28e-27 103
Msa1001190 MtrunA17_Chr8g0342511 56.322 87 37 1 1 87 1 86 1.70e-27 101
Msa1001190 MtrunA17_Chr8g0342471 54.444 90 41 0 1 90 1 90 2.08e-27 102
Msa1001190 MtrunA17_Chr3g0133601 48.649 111 55 2 14 124 37 145 2.70e-27 104
Msa1001190 MtrunA17_Chr8g0342531 53.333 90 41 1 1 90 1 89 6.87e-27 102
Msa1001190 MtrunA17_Chr5g0395221 53.933 89 40 1 1 89 1 88 1.02e-26 99.4
Msa1001190 MtrunA17_Chr6g0454921 41.259 143 80 3 14 156 15 153 1.47e-26 102
Msa1001190 MtrunA17_Chr3g0099141 50.000 88 43 1 8 95 36 122 1.72e-26 100
Msa1001190 MtrunA17_Chr4g0030881 43.243 111 55 2 13 116 8 117 1.75e-26 103
Msa1001190 MtrunA17_Chr5g0401731 47.573 103 52 2 14 116 15 115 6.06e-26 103
Msa1001190 MtrunA17_Chr4g0053431 49.515 103 50 2 14 116 5 105 1.42e-25 101
Msa1001190 MtrunA17_Chr7g0229131 57.333 75 32 0 46 120 5 79 8.60e-25 96.7
Msa1001190 MtrunA17_Chr5g0434901 61.111 72 28 0 43 114 3 74 1.65e-24 94.4
Msa1001190 MtrunA17_Chr2g0323321 47.312 93 47 2 1 93 1 91 2.58e-24 93.6
Msa1001190 MtrunA17_Chr4g0058991 42.202 109 61 2 9 117 204 310 3.74e-24 100
Msa1001190 MtrunA17_Chr7g0229101 60.870 69 27 0 46 114 5 73 5.78e-24 95.5
Msa1001190 MtrunA17_Chr3g0093811 61.111 72 28 0 45 116 14 85 5.34e-23 94.4
Msa1001190 MtrunA17_Chr5g0429661 38.462 117 69 3 1 116 108 222 2.65e-22 94.0
Msa1001190 MtrunA17_Chr3g0117511 40.171 117 66 3 3 117 170 284 4.49e-22 94.4
Msa1001190 MtrunA17_Chr5g0437321 47.000 100 51 2 14 113 19 116 1.30e-21 91.3
Msa1001190 MtrunA17_Chr7g0238631 45.631 103 54 2 14 116 113 213 1.44e-21 93.2
Msa1001190 MtrunA17_Chr5g0425591 45.882 85 44 2 13 96 10 93 2.76e-21 85.1
Msa1001190 MtrunA17_Chr5g0417621 34.810 158 92 4 10 160 130 283 7.51e-21 90.9
Msa1001190 MtrunA17_Chr6g0480581 43.269 104 53 3 14 115 4 103 1.20e-20 87.4
Msa1001190 MtrunA17_Chr7g0238651 34.615 130 84 1 14 142 7 136 7.26e-20 87.4
Msa1001190 MtrunA17_Chr6g0460661 41.346 104 55 3 10 111 12 111 8.98e-20 83.2
Msa1001190 MtrunA17_Chr6g0453751 43.011 93 45 2 12 96 20 112 9.75e-20 82.4
Msa1001190 MtrunA17_Chr5g0397841 46.465 99 50 3 12 110 109 204 1.60e-19 87.0
Msa1001190 MtrunA17_Chr1g0157731 39.806 103 60 2 14 116 91 191 2.15e-19 87.0
Msa1001190 MtrunA17_Chr4g0042501 40.909 110 63 2 14 123 105 212 3.45e-19 85.9
Msa1001190 MtrunA17_Chr3g0125801 42.202 109 61 2 8 116 10 116 3.95e-19 84.3
Msa1001190 MtrunA17_Chr3g0139671 39.806 103 60 2 14 116 85 185 5.18e-19 85.9
Msa1001190 MtrunA17_Chr7g0228531 42.241 116 60 4 12 123 218 330 1.26e-18 84.3
Msa1001190 MtrunA17_Chr8g0362231 40.541 111 61 3 17 127 25 130 7.17e-18 82.0
Msa1001190 MtrunA17_Chr5g0416341 39.831 118 68 3 17 133 29 144 9.11e-18 82.0
Msa1001190 MtrunA17_Chr7g0254261 36.111 144 77 3 14 144 89 230 4.30e-17 79.3
Msa1001190 MtrunA17_Chr7g0228401 42.667 75 42 1 37 111 301 374 1.50e-16 78.6
Msa1001190 MtrunA17_Chr6g0460671 39.806 103 60 2 14 116 99 199 4.83e-16 76.6
Msa1001190 MtrunA17_Chr7g0228481 39.655 116 63 4 12 123 218 330 8.98e-16 76.3
Msa1001190 MtrunA17_Chr1g0177901 47.619 63 33 0 49 111 27 89 9.88e-16 73.6
Msa1001190 MtrunA17_Chr7g0233061 44.444 63 35 0 49 111 211 273 9.12e-15 72.8
Msa1001190 MtrunA17_Chr7g0247141 57.447 47 20 0 1 47 1 47 1.25e-14 66.6
Msa1001190 MtrunA17_Chr1g0193901 48.333 60 29 2 11 69 10 68 6.64e-13 63.5
Msa1001190 MtrunA17_Chr1g0193891 48.333 60 29 2 11 69 10 68 6.64e-13 63.5
Msa1001190 MtrunA17_Chr1g0193871 48.333 60 29 2 11 69 10 68 6.64e-13 63.5
Msa1001190 MtrunA17_Chr1g0193881 48.333 60 29 2 11 69 10 68 6.64e-13 63.5
Msa1001190 MtrunA17_Chr5g0434871 57.778 45 19 0 75 119 2 46 7.93e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001190 AT3G49690.1 75.424 118 29 0 1 118 1 118 1.05e-64 204
Msa1001190 AT5G65790.1 76.271 118 28 0 1 118 1 118 1.71e-64 205
Msa1001190 AT5G23000.1 77.586 116 26 0 1 116 1 116 1.15e-63 202
Msa1001190 AT2G36890.1 75.630 119 29 0 1 119 1 119 1.22e-63 201
Msa1001190 AT4G37780.1 72.269 119 33 0 1 119 1 119 2.00e-63 201
Msa1001190 AT2G36890.2 75.630 119 29 0 1 119 42 160 2.15e-63 201
Msa1001190 AT5G57620.1 73.950 119 31 0 1 119 1 119 3.99e-62 198
Msa1001190 AT5G16770.4 41.026 234 126 5 1 234 1 222 3.07e-50 167
Msa1001190 AT5G16770.3 41.026 234 126 5 1 234 1 222 3.07e-50 167
Msa1001190 AT4G28110.1 61.864 118 44 1 1 118 1 117 4.14e-50 166
Msa1001190 AT5G16770.1 61.017 118 45 1 1 118 1 117 6.20e-50 167
Msa1001190 AT5G16770.2 61.017 118 45 1 1 118 1 117 6.20e-50 167
Msa1001190 AT3G23250.1 62.069 116 43 1 1 116 1 115 3.50e-49 163
Msa1001190 AT3G02940.2 59.322 118 47 1 1 118 1 117 5.81e-49 164
Msa1001190 AT3G01140.2 45.902 183 92 3 1 180 1 179 6.93e-49 164
Msa1001190 AT3G61250.1 58.824 119 48 1 1 119 1 118 9.88e-49 162
Msa1001190 AT3G02940.1 59.322 118 47 1 1 118 1 117 1.08e-48 163
Msa1001190 AT3G02940.3 59.322 118 47 1 1 118 1 117 1.08e-48 163
Msa1001190 AT3G47600.1 60.156 128 50 1 1 128 1 127 1.18e-48 163
Msa1001190 AT2G31180.1 55.714 140 59 2 1 138 1 139 1.55e-48 160
Msa1001190 AT5G62470.2 55.862 145 61 2 1 143 1 144 2.54e-48 163
Msa1001190 AT1G16490.1 61.739 115 43 1 2 116 4 117 2.69e-48 160
Msa1001190 AT5G15310.4 61.017 118 45 1 1 118 1 117 2.90e-48 160
Msa1001190 AT5G56110.1 63.793 116 41 1 1 116 1 115 3.86e-48 162
Msa1001190 AT1G22640.1 57.143 119 50 1 1 119 1 118 5.01e-48 159
Msa1001190 AT5G15310.1 61.017 118 45 1 1 118 1 117 6.80e-48 161
Msa1001190 AT4G34990.1 48.125 160 73 2 1 151 1 159 7.00e-48 160
Msa1001190 AT1G79180.1 59.677 124 49 1 2 125 4 126 7.75e-48 160
Msa1001190 AT5G15310.2 61.017 118 45 1 1 118 1 117 8.19e-48 160
Msa1001190 AT5G49330.1 61.345 119 45 1 1 119 1 118 1.87e-47 160
Msa1001190 AT4G17785.2 61.345 119 44 2 1 118 1 118 2.20e-47 160
Msa1001190 AT3G12820.1 62.931 116 42 1 3 118 5 119 2.37e-47 157
Msa1001190 AT4G17785.1 61.345 119 44 2 1 118 1 118 2.58e-47 160
Msa1001190 AT2G47460.1 61.207 116 44 1 1 116 1 115 3.39e-47 160
Msa1001190 AT1G06180.1 55.797 138 58 2 1 138 1 135 3.39e-47 157
Msa1001190 AT4G21440.1 59.322 118 47 1 1 118 1 117 5.35e-47 159
Msa1001190 AT5G62470.1 55.862 145 60 3 1 143 1 143 1.47e-46 158
Msa1001190 AT2G16720.1 57.143 119 50 1 1 119 1 118 1.56e-46 156
Msa1001190 AT1G74650.1 61.017 118 45 1 1 118 1 117 1.58e-46 158
Msa1001190 AT1G56160.1 62.609 115 42 1 2 116 4 117 1.85e-46 157
Msa1001190 AT3G62610.1 61.207 116 44 1 1 116 1 115 2.18e-46 158
Msa1001190 AT4G38620.1 56.780 118 50 1 1 118 1 117 2.32e-46 156
Msa1001190 AT4G09460.1 57.143 119 50 1 1 119 1 118 4.22e-46 154
Msa1001190 AT1G08810.1 51.553 161 68 3 1 152 1 160 7.17e-46 155
Msa1001190 AT3G01140.1 45.000 180 92 3 4 180 47 222 1.06e-45 157
Msa1001190 AT5G65230.1 57.627 118 49 1 1 118 1 117 1.07e-45 155
Msa1001190 AT3G13540.1 57.895 114 47 1 5 118 16 128 1.53e-45 153
Msa1001190 AT5G10280.1 57.627 118 49 1 1 118 1 117 2.97e-45 154
Msa1001190 AT1G34670.1 58.475 118 48 1 1 118 1 117 4.52e-45 155
Msa1001190 AT3G28470.1 62.162 111 41 1 1 111 1 110 5.16e-45 154
Msa1001190 AT4G01680.3 59.483 116 46 1 1 116 1 115 5.66e-45 151
Msa1001190 AT3G28910.1 61.207 116 44 1 1 116 1 115 6.36e-45 153
Msa1001190 AT1G35515.1 55.932 118 51 1 1 118 1 117 1.43e-44 149
Msa1001190 AT4G12350.1 57.627 118 49 1 1 118 1 117 3.07e-44 150
Msa1001190 AT4G01680.1 59.483 116 46 1 1 116 1 115 3.11e-44 152
Msa1001190 AT4G05100.1 57.983 119 48 2 1 118 1 118 3.26e-44 152
Msa1001190 AT5G14340.1 59.829 117 46 1 1 117 13 128 5.46e-44 150
Msa1001190 AT1G57560.1 47.771 157 64 2 1 140 1 156 1.33e-43 150
Msa1001190 AT4G22680.1 55.932 118 51 1 1 118 1 117 2.67e-43 147
Msa1001190 AT1G63910.1 56.897 116 49 1 1 116 1 115 4.33e-43 150
Msa1001190 AT1G57560.2 56.780 118 50 1 1 118 1 117 5.83e-43 147
Msa1001190 AT3G13890.2 57.143 119 50 1 1 119 1 118 8.06e-43 149
Msa1001190 AT5G26660.1 56.897 116 49 1 1 116 1 115 1.60e-42 148
Msa1001190 AT1G09540.1 56.897 116 49 1 1 116 1 115 3.91e-42 147
Msa1001190 AT5G61420.2 43.713 167 78 3 1 153 1 165 4.30e-42 147
Msa1001190 AT5G07690.1 56.522 115 49 1 1 115 1 114 5.76e-42 146
Msa1001190 AT5G16600.1 56.034 116 50 1 1 116 1 115 2.04e-41 144
Msa1001190 AT1G79180.2 46.497 157 50 2 2 125 4 159 2.26e-41 144
Msa1001190 AT1G74080.1 54.237 118 53 1 1 118 1 117 3.34e-41 144
Msa1001190 AT5G60890.1 55.172 116 51 1 1 116 1 115 4.60e-41 142
Msa1001190 AT5G62320.1 52.033 123 53 1 2 118 3 125 4.87e-41 141
Msa1001190 AT4G01680.2 53.906 128 46 2 1 116 1 127 7.89e-41 143
Msa1001190 AT5G54230.1 35.000 260 138 7 1 231 1 258 1.20e-40 142
Msa1001190 AT5G07700.1 53.390 118 54 1 1 118 1 117 5.23e-40 141
Msa1001190 AT5G07700.2 53.390 118 54 1 1 118 1 117 5.23e-40 141
Msa1001190 AT1G74430.1 56.034 116 50 1 1 116 1 115 6.75e-40 139
Msa1001190 AT3G12720.1 55.263 114 50 1 6 119 16 128 7.54e-40 140
Msa1001190 AT3G13890.1 53.125 128 50 2 1 119 1 127 8.80e-40 141
Msa1001190 AT1G18570.1 53.782 119 53 2 1 118 1 118 8.24e-39 138
Msa1001190 AT5G06100.1 52.212 113 53 1 8 120 28 139 8.84e-39 140
Msa1001190 AT5G35550.1 39.267 191 97 4 9 198 11 183 1.52e-38 135
Msa1001190 AT5G55020.1 54.128 109 49 1 12 120 26 133 2.74e-38 140
Msa1001190 AT5G52600.1 57.407 108 45 1 9 116 9 115 2.91e-38 132
Msa1001190 AT5G06100.5 52.212 113 53 1 8 120 28 139 3.45e-38 140
Msa1001190 AT5G06100.2 52.212 113 53 1 8 120 28 139 3.45e-38 140
Msa1001190 AT5G06100.3 52.212 113 53 1 8 120 28 139 3.45e-38 140
Msa1001190 AT5G06100.4 52.212 113 53 1 8 120 28 139 3.45e-38 140
Msa1001190 AT5G40330.1 53.571 112 51 1 13 124 13 123 4.38e-38 133
Msa1001190 AT1G66230.1 39.234 209 115 7 1 199 1 207 5.96e-38 134
Msa1001190 AT5G14750.1 55.769 104 45 1 13 116 17 119 1.37e-37 131
Msa1001190 AT2G32460.1 52.294 109 51 1 12 120 18 125 1.94e-37 137
Msa1001190 AT1G18710.1 52.586 116 54 1 1 116 1 115 1.99e-37 132
Msa1001190 AT2G32460.2 52.294 109 51 1 12 120 6 113 2.04e-37 137
Msa1001190 AT3G27920.1 53.571 112 51 1 13 124 15 125 2.15e-37 131
Msa1001190 AT4G26930.1 55.769 104 45 1 12 115 19 121 3.48e-37 135
Msa1001190 AT3G27810.1 46.667 135 71 1 9 143 17 150 7.44e-37 130
Msa1001190 AT3G11440.2 43.382 136 76 1 9 144 38 172 9.74e-37 135
Msa1001190 AT3G11440.3 43.382 136 76 1 9 144 38 172 3.66e-36 134
Msa1001190 AT3G11440.4 43.382 136 76 1 9 144 38 172 3.66e-36 134
Msa1001190 AT3G11440.1 43.382 136 76 1 9 144 38 172 3.66e-36 134
Msa1001190 AT5G12870.1 54.717 106 47 1 11 116 17 121 1.37e-35 128
Msa1001190 AT5G40350.1 52.174 115 54 1 10 124 15 128 1.75e-35 126
Msa1001190 AT1G66370.1 50.427 117 53 2 1 117 1 112 3.26e-35 126
Msa1001190 AT3G01530.1 39.355 155 93 1 8 162 21 174 9.12e-35 124
Msa1001190 AT1G66380.1 54.717 106 47 1 12 117 8 112 1.16e-34 121
Msa1001190 AT1G25340.1 33.913 230 147 3 10 239 16 240 1.26e-34 125
Msa1001190 AT5G52260.1 47.287 129 67 1 9 137 9 136 1.31e-34 125
Msa1001190 AT3G48920.1 38.798 183 83 3 9 165 15 194 2.95e-34 124
Msa1001190 AT1G48000.1 56.190 105 45 1 11 115 31 134 5.96e-34 123
Msa1001190 AT3G08500.1 53.211 109 50 1 8 116 26 133 7.32e-34 125
Msa1001190 AT4G25560.1 48.696 115 58 1 11 125 9 122 9.83e-34 123
Msa1001190 AT2G26960.1 47.664 107 55 1 9 115 17 122 3.41e-33 125
Msa1001190 AT2G47190.1 35.577 208 114 6 8 207 16 211 3.42e-33 122
Msa1001190 AT1G68320.1 52.830 106 49 1 11 116 18 122 3.47e-33 122
Msa1001190 AT3G24310.1 54.808 104 46 1 13 116 19 121 5.30e-33 121
Msa1001190 AT1G56650.1 52.830 106 49 1 12 117 8 112 5.70e-33 120
Msa1001190 AT3G30210.1 53.398 103 47 1 13 115 28 129 8.71e-33 120
Msa1001190 AT1G66390.1 53.774 106 48 1 12 117 8 112 1.15e-32 119
Msa1001190 AT4G13480.1 53.846 104 47 1 13 116 7 109 1.62e-32 119
Msa1001190 AT3G06490.1 56.481 108 46 1 8 115 15 121 7.44e-31 117
Msa1001190 AT3G53200.1 50.000 110 54 1 12 121 9 117 1.69e-30 114
Msa1001190 AT1G25340.2 32.609 230 145 4 10 239 16 235 6.96e-30 113
Msa1001190 AT1G25340.3 33.040 227 142 4 13 239 19 235 1.14e-29 113
Msa1001190 AT5G59780.3 44.444 108 59 1 9 116 5 111 2.19e-29 110
Msa1001190 AT3G46130.1 46.154 104 55 1 13 116 10 112 3.76e-29 110
Msa1001190 AT3G60460.1 47.222 108 55 2 9 115 8 114 2.54e-28 109
Msa1001190 AT5G49620.1 54.808 104 46 1 12 115 26 128 4.51e-28 109
Msa1001190 AT5G26660.2 60.274 73 29 0 44 116 12 84 9.79e-28 108
Msa1001190 AT5G14750.3 58.974 78 29 1 39 116 11 85 1.29e-27 104
Msa1001190 AT5G35550.2 44.915 118 53 2 39 146 43 158 3.04e-27 105
Msa1001190 AT3G47600.2 59.036 83 34 0 46 128 39 121 4.07e-27 107
Msa1001190 AT2G23290.1 51.456 103 48 2 14 116 13 113 5.95e-27 106
Msa1001190 AT3G09230.1 46.364 110 56 3 9 118 51 157 1.28e-26 106
Msa1001190 AT3G12820.2 62.857 70 26 0 49 118 2 71 3.32e-26 101
Msa1001190 AT3G27810.2 45.545 101 55 0 43 143 1 101 7.90e-26 100
Msa1001190 AT4G37260.1 43.902 123 59 3 14 128 13 133 1.90e-25 102
Msa1001190 AT3G55730.1 48.182 110 54 3 9 118 52 158 2.03e-25 103
Msa1001190 AT3G50060.1 45.946 111 58 2 14 124 6 114 2.51e-25 101
Msa1001190 AT1G66380.3 61.644 73 28 0 45 117 7 79 6.67e-25 95.5
Msa1001190 AT5G40350.2 54.430 79 36 0 46 124 5 83 7.51e-25 97.1
Msa1001190 AT2G26950.1 41.346 104 60 1 9 112 13 115 1.62e-24 100
Msa1001190 AT5G59780.2 54.054 74 34 0 43 116 17 90 1.70e-24 97.4
Msa1001190 AT5G49620.2 48.305 118 46 2 12 115 26 142 1.72e-24 99.8
Msa1001190 AT3G27785.1 37.037 135 83 2 9 143 184 316 1.73e-24 101
Msa1001190 AT3G46130.4 54.054 74 34 0 43 116 17 90 1.88e-24 97.8
Msa1001190 AT3G46130.3 55.556 72 32 0 45 116 9 80 2.59e-24 97.4
Msa1001190 AT3G53200.2 53.165 79 37 0 43 121 6 84 5.10e-24 95.9
Msa1001190 AT2G39880.1 47.222 108 54 3 9 116 46 150 2.40e-23 97.4
Msa1001190 AT5G40360.1 38.462 117 70 2 9 125 153 267 2.93e-23 97.1
Msa1001190 AT5G67300.1 46.602 103 53 2 14 116 6 106 5.81e-23 95.5
Msa1001190 AT1G71030.2 45.161 93 50 1 52 143 5 97 9.43e-23 92.0
Msa1001190 AT1G71030.1 45.161 93 50 1 52 143 19 111 1.13e-22 92.0
Msa1001190 AT1G18960.1 44.144 111 55 3 6 116 5 108 2.00e-22 94.0
Msa1001190 AT5G02320.1 44.660 103 55 2 14 116 127 227 3.97e-22 95.1
Msa1001190 AT5G02320.2 44.660 103 55 2 14 116 127 227 3.97e-22 95.1
Msa1001190 AT5G02320.3 44.660 103 55 2 14 116 67 167 4.76e-22 94.7
Msa1001190 AT4G18770.1 38.532 109 65 2 9 117 212 318 6.43e-22 94.0
Msa1001190 AT1G69560.1 41.739 115 65 2 9 123 102 214 1.24e-21 92.0
Msa1001190 AT1G69560.2 41.739 115 65 2 9 123 118 230 1.45e-21 92.4
Msa1001190 AT2G25230.1 42.056 107 60 2 9 115 21 125 1.99e-21 89.7
Msa1001190 AT3G09370.1 42.718 103 57 2 14 116 130 230 3.12e-21 92.4
Msa1001190 AT3G09370.2 42.718 103 57 2 14 116 135 235 3.35e-21 92.4
Msa1001190 AT3G09370.3 42.718 103 57 2 14 116 143 243 3.94e-21 92.4
Msa1001190 AT5G58850.1 39.831 118 65 4 14 127 105 220 1.31e-20 90.5
Msa1001190 AT1G17950.1 42.718 103 57 2 14 116 5 105 3.76e-20 86.7
Msa1001190 AT1G26780.1 40.000 120 70 2 14 133 98 215 5.60e-20 87.0
Msa1001190 AT1G22640.3 55.738 61 27 0 59 119 1 61 6.34e-20 85.1
Msa1001190 AT1G73410.1 44.660 103 55 2 14 116 6 106 9.36e-20 85.5
Msa1001190 AT1G26780.2 41.818 110 62 2 14 123 98 205 1.04e-19 87.4
Msa1001190 AT4G33450.1 39.850 133 69 4 3 134 13 135 1.07e-19 85.5
Msa1001190 AT1G73410.2 44.660 103 55 2 14 116 6 106 1.61e-19 84.0
Msa1001190 AT1G66380.2 46.341 82 43 1 12 93 8 88 2.01e-19 81.3
Msa1001190 AT3G23250.2 60.345 58 23 0 59 116 1 58 2.66e-19 84.0
Msa1001190 AT5G11510.3 37.864 103 62 2 14 116 81 181 7.25e-19 85.9
Msa1001190 AT5G11510.1 37.864 103 62 2 14 116 81 181 7.25e-19 85.9
Msa1001190 AT5G11510.4 37.864 103 62 2 14 116 81 181 7.25e-19 85.9
Msa1001190 AT5G11510.2 36.792 106 65 2 11 116 78 181 8.21e-19 85.9
Msa1001190 AT5G11510.5 36.792 106 65 2 11 116 78 181 9.03e-19 85.9
Msa1001190 AT5G14750.4 56.897 58 25 0 59 116 1 58 1.81e-18 79.7
Msa1001190 AT5G14750.2 56.897 58 25 0 59 116 1 58 1.81e-18 79.7
Msa1001190 AT5G17800.1 42.857 105 54 3 14 116 93 193 3.42e-18 82.8
Msa1001190 AT5G40430.1 35.714 140 77 4 9 138 49 185 3.94e-18 81.3
Msa1001190 AT4G32730.5 38.938 113 59 4 14 120 87 195 5.42e-18 83.6
Msa1001190 AT4G32730.4 38.938 113 59 4 14 120 87 195 5.42e-18 83.6
Msa1001190 AT4G32730.3 38.938 113 59 4 14 120 87 195 5.42e-18 83.6
Msa1001190 AT4G32730.2 38.938 113 59 4 14 120 87 195 5.42e-18 83.6
Msa1001190 AT4G32730.1 38.938 113 59 4 14 120 87 195 5.61e-18 83.2
Msa1001190 AT5G11050.1 35.238 105 66 2 12 116 103 205 7.27e-18 82.4
Msa1001190 AT4G00540.2 39.450 109 59 2 12 116 101 206 1.43e-17 81.6
Msa1001190 AT2G02820.2 39.286 112 66 2 17 128 33 142 2.08e-17 81.3
Msa1001190 AT2G02820.3 39.286 112 66 2 17 128 33 142 2.17e-17 80.5
Msa1001190 AT4G00540.1 39.450 109 59 2 12 116 99 204 2.31e-17 81.3
Msa1001190 AT2G02820.1 39.286 112 66 2 17 128 33 142 2.65e-17 80.9
Msa1001190 AT2G37630.1 39.000 100 60 1 13 111 3 102 7.54e-17 79.3
Msa1001190 AT1G14350.2 38.739 111 66 2 17 127 28 136 1.36e-16 79.0
Msa1001190 AT1G14350.1 38.739 111 66 2 17 127 28 136 1.36e-16 79.0
Msa1001190 AT3G29020.2 37.273 110 67 2 14 123 67 174 2.40e-16 77.4
Msa1001190 AT3G29020.1 37.273 110 67 2 14 123 65 172 2.43e-16 76.3
Msa1001190 AT5G39700.1 36.000 125 75 4 9 133 51 170 5.47e-12 63.2
Msa1001190 AT4G25560.2 47.273 55 29 0 71 125 2 56 6.16e-11 60.8

Find 29 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGATGGTTGAACTATTTA+AGG 0.151954 6_4:-84889369 Msa1001190:CDS
TATTCCTTTACCAATTAAAA+TGG 0.194308 6_4:-84888536 Msa1001190:CDS
GGTAAAGGAATATTATTAAT+TGG 0.215694 6_4:+84888547 None:intergenic
AAACACTACATTCAAGAAAA+TGG 0.276016 6_4:-84889861 Msa1001190:CDS
AAAATGGCAATGCTGGTAAT+TGG 0.287812 6_4:-84889845 Msa1001190:CDS
TGGTAATTGAGCTGCTATAA+AGG 0.352875 6_4:+84888804 None:intergenic
ACATCATTATCTGTTCTTCC+TGG 0.356510 6_4:+84888784 None:intergenic
CTTGAAATTTCCTTGGTTGT+TGG 0.397698 6_4:+84888460 None:intergenic
AAACCTCCAAGCTTGATATT+AGG 0.446383 6_4:+84889346 None:intergenic
ATTCAAGAAAATGGCAATGC+TGG 0.460522 6_4:-84889852 Msa1001190:CDS
GAGTCAAAACAAGGTGTGTT+CGG 0.461549 6_4:+84888598 None:intergenic
ATGGACTTGCCTGCTTCCTA+TGG 0.482651 6_4:+84889282 None:intergenic
TTAAGGCCTAATATCAAGCT+TGG 0.490508 6_4:-84889352 Msa1001190:CDS
TTTCAGGCTTAAATCGTTGT+GGG 0.494941 6_4:-84889405 Msa1001190:intron
CAAGAAGAATTGCATCATCA+TGG 0.503609 6_4:+84888377 None:intergenic
ACAAAGGGTGCTTCAAGTTG+AGG 0.523660 6_4:+84888634 None:intergenic
GACAAATCAAAAGTGAAAAG+AGG 0.524219 6_4:-84889915 Msa1001190:CDS
TTTATAGCAGCTCAATTACC+AGG 0.549006 6_4:-84888802 Msa1001190:CDS
AGGCCTAATATCAAGCTTGG+AGG 0.552249 6_4:-84889349 Msa1001190:CDS
GGAAGAGTTGTCGTCTAAGA+TGG 0.562423 6_4:-84889384 Msa1001190:CDS
AATAATTAAGGTCATGGGAA+GGG 0.568392 6_4:-84889949 None:intergenic
CAAGCTTGGAGGTTTCACTA+AGG 0.582560 6_4:-84889338 Msa1001190:CDS
AGTGTAAATATTGTTGTCTG+TGG 0.589563 6_4:+84888708 None:intergenic
AAATAATTAAGGTCATGGGA+AGG 0.599808 6_4:-84889950 None:intergenic
GCTTGGAGGTTTCACTAAGG+AGG 0.602940 6_4:-84889335 Msa1001190:CDS
CAAAAGTGAAAAGAGGTCCA+TGG 0.611543 6_4:-84889908 Msa1001190:CDS
TCATCTTCTTCATTAGACCA+TGG 0.627345 6_4:+84889891 None:intergenic
TAGTACTACACCAACAACCA+AGG 0.662260 6_4:-84888470 Msa1001190:CDS
AATTTGTAGGAGTCAAAACA+AGG 0.676985 6_4:+84888589 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTATGTTTAATTTG+TGG - chr6_4:84888850-84888869 Msa1001190:intron 10.0%
!!! TTTTTATTATGTTTAATTTG+TGG - chr6_4:84888850-84888869 Msa1001190:intron 10.0%
!!! ATTAAATCTAAAATCTAAGT+TGG - chr6_4:84888584-84888603 Msa1001190:CDS 15.0%
!! ATAAACATAATATGATACAT+TGG + chr6_4:84888704-84888723 None:intergenic 15.0%
!!! CAAAATATTGATTTCAAATA+AGG + chr6_4:84888815-84888834 None:intergenic 15.0%
!!! ATATTTATTTTTTTGTCATC+AGG - chr6_4:84889453-84889472 Msa1001190:intron 15.0%
!!! ATTAAATCTAAAATCTAAGT+TGG - chr6_4:84888584-84888603 Msa1001190:CDS 15.0%
!! ATAAACATAATATGATACAT+TGG + chr6_4:84888704-84888723 None:intergenic 15.0%
!!! CAAAATATTGATTTCAAATA+AGG + chr6_4:84888815-84888834 None:intergenic 15.0%
!!! ATATTTATTTTTTTGTCATC+AGG - chr6_4:84889453-84889472 Msa1001190:intron 15.0%
!! GAAACTTTCTATAAGAATTA+GGG + chr6_4:84888648-84888667 None:intergenic 20.0%
!! TGAAACTTTCTATAAGAATT+AGG + chr6_4:84888649-84888668 None:intergenic 20.0%
!! CTTATAGAAAGTTTCATTTA+AGG - chr6_4:84888653-84888672 Msa1001190:CDS 20.0%
!! ATAATATGATACATTGGAAA+AGG + chr6_4:84888698-84888717 None:intergenic 20.0%
!! ATAGAAACTATAGAAATGAA+TGG + chr6_4:84889024-84889043 None:intergenic 20.0%
!! CATACTTAACACAATAAATA+AGG + chr6_4:84889196-84889215 None:intergenic 20.0%
!! TAAACAAAATTATACGAACT+CGG - chr6_4:84889373-84889392 Msa1001190:CDS 20.0%
!! GGTAAAGGAATATTATTAAT+TGG + chr6_4:84889740-84889759 None:intergenic 20.0%
!! TATTCCTTTACCAATTAAAA+TGG - chr6_4:84889748-84889767 Msa1001190:intron 20.0%
!! GAAACTTTCTATAAGAATTA+GGG + chr6_4:84888648-84888667 None:intergenic 20.0%
!! TGAAACTTTCTATAAGAATT+AGG + chr6_4:84888649-84888668 None:intergenic 20.0%
!! CTTATAGAAAGTTTCATTTA+AGG - chr6_4:84888653-84888672 Msa1001190:CDS 20.0%
!! ATAATATGATACATTGGAAA+AGG + chr6_4:84888698-84888717 None:intergenic 20.0%
!! ATAGAAACTATAGAAATGAA+TGG + chr6_4:84889024-84889043 None:intergenic 20.0%
!! CATACTTAACACAATAAATA+AGG + chr6_4:84889196-84889215 None:intergenic 20.0%
!! TAAACAAAATTATACGAACT+CGG - chr6_4:84889373-84889392 Msa1001190:CDS 20.0%
!! GGTAAAGGAATATTATTAAT+TGG + chr6_4:84889740-84889759 None:intergenic 20.0%
!! TATTCCTTTACCAATTAAAA+TGG - chr6_4:84889748-84889767 Msa1001190:intron 20.0%
! AAACACTACATTCAAGAAAA+TGG - chr6_4:84888423-84888442 Msa1001190:CDS 25.0%
!!! TATATAATCACCTGCTTTTA+GGG + chr6_4:84888475-84888494 None:intergenic 25.0%
!!! ATATATAATCACCTGCTTTT+AGG + chr6_4:84888476-84888495 None:intergenic 25.0%
! ATAGAAAGTTTCATTTAAGG+AGG - chr6_4:84888656-84888675 Msa1001190:CDS 25.0%
!!! TAATTTGTGGTAATCTTTTC+AGG - chr6_4:84888863-84888882 Msa1001190:intron 25.0%
! TAAGATGGTTGAACTATTTA+AGG - chr6_4:84888915-84888934 Msa1001190:intron 25.0%
! ATAATGTGTAGGAATACATA+TGG + chr6_4:84889050-84889069 None:intergenic 25.0%
!! ATTTTGCATGTATAATGTGT+AGG + chr6_4:84889061-84889080 None:intergenic 25.0%
! ACAATTGTGATTAGATACTA+CGG + chr6_4:84889292-84889311 None:intergenic 25.0%
! GCTAAGTTTGAATAATAGAA+AGG - chr6_4:84889322-84889341 Msa1001190:CDS 25.0%
!! TTATGTCTTCGACTAATTTT+AGG + chr6_4:84889356-84889375 None:intergenic 25.0%
!!! TTTATTTTTTTGTCATCAGG+TGG - chr6_4:84889456-84889475 Msa1001190:intron 25.0%
! ATAATGATGTGAAAAATCAC+TGG - chr6_4:84889513-84889532 Msa1001190:intron 25.0%
!!! TTTTGACTCCTACAAATTTT+TGG - chr6_4:84889700-84889719 Msa1001190:intron 25.0%
! TTGCAAATCCAAAAATTTGT+AGG + chr6_4:84889711-84889730 None:intergenic 25.0%
!!! GATTCCATTTTAATTGGTAA+AGG + chr6_4:84889755-84889774 None:intergenic 25.0%
! TGAAAAACTTGAAATTTCCT+TGG + chr6_4:84889834-84889853 None:intergenic 25.0%
! AAACACTACATTCAAGAAAA+TGG - chr6_4:84888423-84888442 Msa1001190:CDS 25.0%
!!! TATATAATCACCTGCTTTTA+GGG + chr6_4:84888475-84888494 None:intergenic 25.0%
!!! ATATATAATCACCTGCTTTT+AGG + chr6_4:84888476-84888495 None:intergenic 25.0%
! ATAGAAAGTTTCATTTAAGG+AGG - chr6_4:84888656-84888675 Msa1001190:CDS 25.0%
!!! TAATTTGTGGTAATCTTTTC+AGG - chr6_4:84888863-84888882 Msa1001190:intron 25.0%
! TAAGATGGTTGAACTATTTA+AGG - chr6_4:84888915-84888934 Msa1001190:intron 25.0%
! ATAATGTGTAGGAATACATA+TGG + chr6_4:84889050-84889069 None:intergenic 25.0%
!! ATTTTGCATGTATAATGTGT+AGG + chr6_4:84889061-84889080 None:intergenic 25.0%
! ACAATTGTGATTAGATACTA+CGG + chr6_4:84889292-84889311 None:intergenic 25.0%
! GCTAAGTTTGAATAATAGAA+AGG - chr6_4:84889322-84889341 Msa1001190:CDS 25.0%
!! TTATGTCTTCGACTAATTTT+AGG + chr6_4:84889356-84889375 None:intergenic 25.0%
!!! TTTATTTTTTTGTCATCAGG+TGG - chr6_4:84889456-84889475 Msa1001190:intron 25.0%
! ATAATGATGTGAAAAATCAC+TGG - chr6_4:84889513-84889532 Msa1001190:intron 25.0%
!!! TTTTGACTCCTACAAATTTT+TGG - chr6_4:84889700-84889719 Msa1001190:intron 25.0%
! TTGCAAATCCAAAAATTTGT+AGG + chr6_4:84889711-84889730 None:intergenic 25.0%
!!! GATTCCATTTTAATTGGTAA+AGG + chr6_4:84889755-84889774 None:intergenic 25.0%
! TGAAAAACTTGAAATTTCCT+TGG + chr6_4:84889834-84889853 None:intergenic 25.0%
!!! ACTTTTGATTTGTCACAACA+TGG + chr6_4:84888363-84888382 None:intergenic 30.0%
GACAAATCAAAAGTGAAAAG+AGG - chr6_4:84888369-84888388 Msa1001190:CDS 30.0%
!! ATATAATCACCTGCTTTTAG+GGG + chr6_4:84888474-84888493 None:intergenic 30.0%
! CAGATCACTCATAGTTTTTA+AGG - chr6_4:84889248-84889267 Msa1001190:intron 30.0%
! CTAAAGAAAAAGTATGTAGC+AGG - chr6_4:84889545-84889564 Msa1001190:intron 30.0%
AGTGTAAATATTGTTGTCTG+TGG + chr6_4:84889579-84889598 None:intergenic 30.0%
! GGTTTTTGATCAAAGACAAA+GGG + chr6_4:84889668-84889687 None:intergenic 30.0%
AATTTGTAGGAGTCAAAACA+AGG + chr6_4:84889698-84889717 None:intergenic 30.0%
!! GCTTCTGATTCCATTTTAAT+TGG + chr6_4:84889761-84889780 None:intergenic 30.0%
!!! ACTTTTGATTTGTCACAACA+TGG + chr6_4:84888363-84888382 None:intergenic 30.0%
GACAAATCAAAAGTGAAAAG+AGG - chr6_4:84888369-84888388 Msa1001190:CDS 30.0%
!! ATATAATCACCTGCTTTTAG+GGG + chr6_4:84888474-84888493 None:intergenic 30.0%
! CAGATCACTCATAGTTTTTA+AGG - chr6_4:84889248-84889267 Msa1001190:intron 30.0%
! CTAAAGAAAAAGTATGTAGC+AGG - chr6_4:84889545-84889564 Msa1001190:intron 30.0%
AGTGTAAATATTGTTGTCTG+TGG + chr6_4:84889579-84889598 None:intergenic 30.0%
! GGTTTTTGATCAAAGACAAA+GGG + chr6_4:84889668-84889687 None:intergenic 30.0%
AATTTGTAGGAGTCAAAACA+AGG + chr6_4:84889698-84889717 None:intergenic 30.0%
!! GCTTCTGATTCCATTTTAAT+TGG + chr6_4:84889761-84889780 None:intergenic 30.0%
TCATCTTCTTCATTAGACCA+TGG + chr6_4:84888396-84888415 None:intergenic 35.0%
ATTCAAGAAAATGGCAATGC+TGG - chr6_4:84888432-84888451 Msa1001190:CDS 35.0%
AAAATGGCAATGCTGGTAAT+TGG - chr6_4:84888439-84888458 Msa1001190:CDS 35.0%
!! TATAATCACCTGCTTTTAGG+GGG + chr6_4:84888473-84888492 None:intergenic 35.0%
CTTTCTATAAGAATTAGGGC+TGG + chr6_4:84888644-84888663 None:intergenic 35.0%
!! TTTTCAGGCTTAAATCGTTG+TGG - chr6_4:84888878-84888897 Msa1001190:intron 35.0%
TTTCAGGCTTAAATCGTTGT+GGG - chr6_4:84888879-84888898 Msa1001190:intron 35.0%
TTAAGGCCTAATATCAAGCT+TGG - chr6_4:84888932-84888951 Msa1001190:intron 35.0%
AAACCTCCAAGCTTGATATT+AGG + chr6_4:84888941-84888960 None:intergenic 35.0%
TGGTAATTGAGCTGCTATAA+AGG + chr6_4:84889483-84889502 None:intergenic 35.0%
TTTATAGCAGCTCAATTACC+AGG - chr6_4:84889482-84889501 Msa1001190:intron 35.0%
ACATCATTATCTGTTCTTCC+TGG + chr6_4:84889503-84889522 None:intergenic 35.0%
! CGGTTTTTGATCAAAGACAA+AGG + chr6_4:84889669-84889688 None:intergenic 35.0%
! GAATCAGAAGCTTTTTACAC+TGG - chr6_4:84889770-84889789 Msa1001190:intron 35.0%
CTTGAAATTTCCTTGGTTGT+TGG + chr6_4:84889827-84889846 None:intergenic 35.0%
CAAGAAGAATTGCATCATCA+TGG + chr6_4:84889910-84889929 None:intergenic 35.0%
TCATCTTCTTCATTAGACCA+TGG + chr6_4:84888396-84888415 None:intergenic 35.0%
ATTCAAGAAAATGGCAATGC+TGG - chr6_4:84888432-84888451 Msa1001190:CDS 35.0%
AAAATGGCAATGCTGGTAAT+TGG - chr6_4:84888439-84888458 Msa1001190:CDS 35.0%
!! TATAATCACCTGCTTTTAGG+GGG + chr6_4:84888473-84888492 None:intergenic 35.0%
CTTTCTATAAGAATTAGGGC+TGG + chr6_4:84888644-84888663 None:intergenic 35.0%
!! TTTTCAGGCTTAAATCGTTG+TGG - chr6_4:84888878-84888897 Msa1001190:intron 35.0%
TTTCAGGCTTAAATCGTTGT+GGG - chr6_4:84888879-84888898 Msa1001190:intron 35.0%
TTAAGGCCTAATATCAAGCT+TGG - chr6_4:84888932-84888951 Msa1001190:intron 35.0%
AAACCTCCAAGCTTGATATT+AGG + chr6_4:84888941-84888960 None:intergenic 35.0%
TGGTAATTGAGCTGCTATAA+AGG + chr6_4:84889483-84889502 None:intergenic 35.0%
TTTATAGCAGCTCAATTACC+AGG - chr6_4:84889482-84889501 Msa1001190:intron 35.0%
ACATCATTATCTGTTCTTCC+TGG + chr6_4:84889503-84889522 None:intergenic 35.0%
! CGGTTTTTGATCAAAGACAA+AGG + chr6_4:84889669-84889688 None:intergenic 35.0%
! GAATCAGAAGCTTTTTACAC+TGG - chr6_4:84889770-84889789 Msa1001190:intron 35.0%
CTTGAAATTTCCTTGGTTGT+TGG + chr6_4:84889827-84889846 None:intergenic 35.0%
CAAGAAGAATTGCATCATCA+TGG + chr6_4:84889910-84889929 None:intergenic 35.0%
CAAAAGTGAAAAGAGGTCCA+TGG - chr6_4:84888376-84888395 Msa1001190:CDS 40.0%
ATTAGGGCTGGAAATCTAGA+AGG + chr6_4:84888632-84888651 None:intergenic 40.0%
!! TGCACTCTTTTTAGCACCAT+AGG - chr6_4:84888986-84889005 Msa1001190:intron 40.0%
!! TTTTTAGCACCATAGGAAGC+AGG - chr6_4:84888993-84889012 Msa1001190:intron 40.0%
GAGTCAAAACAAGGTGTGTT+CGG + chr6_4:84889689-84889708 None:intergenic 40.0%
TAGTACTACACCAACAACCA+AGG - chr6_4:84889814-84889833 Msa1001190:intron 40.0%
CAAAAGTGAAAAGAGGTCCA+TGG - chr6_4:84888376-84888395 Msa1001190:CDS 40.0%
ATTAGGGCTGGAAATCTAGA+AGG + chr6_4:84888632-84888651 None:intergenic 40.0%
!! TGCACTCTTTTTAGCACCAT+AGG - chr6_4:84888986-84889005 Msa1001190:intron 40.0%
!! TTTTTAGCACCATAGGAAGC+AGG - chr6_4:84888993-84889012 Msa1001190:intron 40.0%
GAGTCAAAACAAGGTGTGTT+CGG + chr6_4:84889689-84889708 None:intergenic 40.0%
TAGTACTACACCAACAACCA+AGG - chr6_4:84889814-84889833 Msa1001190:intron 40.0%
ATATCTCTCCCCCTAAAAGC+AGG - chr6_4:84888462-84888481 Msa1001190:CDS 45.0%
GGAAGAGTTGTCGTCTAAGA+TGG - chr6_4:84888900-84888919 Msa1001190:intron 45.0%
AGGCCTAATATCAAGCTTGG+AGG - chr6_4:84888935-84888954 Msa1001190:intron 45.0%
CAAGCTTGGAGGTTTCACTA+AGG - chr6_4:84888946-84888965 Msa1001190:intron 45.0%
!! ACAAAGGGTGCTTCAAGTTG+AGG + chr6_4:84889653-84889672 None:intergenic 45.0%
ATATCTCTCCCCCTAAAAGC+AGG - chr6_4:84888462-84888481 Msa1001190:CDS 45.0%
GGAAGAGTTGTCGTCTAAGA+TGG - chr6_4:84888900-84888919 Msa1001190:intron 45.0%
AGGCCTAATATCAAGCTTGG+AGG - chr6_4:84888935-84888954 Msa1001190:intron 45.0%
CAAGCTTGGAGGTTTCACTA+AGG - chr6_4:84888946-84888965 Msa1001190:intron 45.0%
!! ACAAAGGGTGCTTCAAGTTG+AGG + chr6_4:84889653-84889672 None:intergenic 45.0%
GCTTGGAGGTTTCACTAAGG+AGG - chr6_4:84888949-84888968 Msa1001190:intron 50.0%
ATGGACTTGCCTGCTTCCTA+TGG + chr6_4:84889005-84889024 None:intergenic 50.0%
GCTTGGAGGTTTCACTAAGG+AGG - chr6_4:84888949-84888968 Msa1001190:intron 50.0%
ATGGACTTGCCTGCTTCCTA+TGG + chr6_4:84889005-84889024 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 84888348 84889958 84888348 ID=Msa1001190;Name=Msa1001190
chr6_4 mRNA 84888348 84889958 84888348 ID=Msa1001190-mRNA-1;Parent=Msa1001190;Name=Msa1001190-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|3|0|249
chr6_4 exon 84889823 84889958 84889823 ID=Msa1001190-mRNA-1:exon:16615;Parent=Msa1001190-mRNA-1
chr6_4 exon 84889292 84889421 84889292 ID=Msa1001190-mRNA-1:exon:16614;Parent=Msa1001190-mRNA-1
chr6_4 exon 84888348 84888831 84888348 ID=Msa1001190-mRNA-1:exon:16613;Parent=Msa1001190-mRNA-1
chr6_4 CDS 84889823 84889958 84889823 ID=Msa1001190-mRNA-1:cds;Parent=Msa1001190-mRNA-1
chr6_4 CDS 84889292 84889421 84889292 ID=Msa1001190-mRNA-1:cds;Parent=Msa1001190-mRNA-1
chr6_4 CDS 84888348 84888831 84888348 ID=Msa1001190-mRNA-1:cds;Parent=Msa1001190-mRNA-1
Gene Sequence

>Msa1001190

ATGGGAAGGGCTCCATGTTGTGACAAATCAAAAGTGAAAAGAGGTCCATGGTCTAATGAAGAAGATGATATTCTCAAACACTACATTCAAGAAAATGGCAATGCTGGTAATTGGATATCTCTCCCCCTAAAAGCAGGCTTAAATCGTTGTGGGAAGAGTTGTCGTCTAAGATGGTTGAACTATTTAAGGCCTAATATCAAGCTTGGAGGTTTCACTAAGGAGGAAGACAACATTATCTGCACTCTTTTTAGCACCATAGGAAGCAGGTGGTCCTTTATAGCAGCTCAATTACCAGGAAGAACAGATAATGATGTGAAAAATCACTGGAACACTAAACTAAAGAAAAAGTATGTAGCAGGAAACTCTTCCACAGACAACAATATTTACACTTTCAACAATACTACTAGTTCTGACTACTTTTCAAGTACTTTGACTTTTCAACCTCAACTTGAAGCACCCTTTGTCTTTGATCAAAAACCGAACACACCTTGTTTTGACTCCTACAAATTTTTGGATTTGCAAGAAACACCAATTAATAATATTCCTTTACCAATTAAAATGGAATCAGAAGCTTTTTACACTGGAAGCAGCTTGAGTAGTAGTTGTAGTACTACACCAACAACCAAGGAAATTTCAAGTTTTTCAAGTGCAACTTTCTTAGAAGATCAGAATAATGATAATCAATGTTTTGAATATGACCATGATGATGCAATTCTTCTTGAAATGTTTCTTGATGATTTATTGAATTAA
Protein sequence

>Msa1001190

MGRAPCCDKSKVKRGPWSNEEDDILKHYIQENGNAGNWISLPLKAGLNRCGKSCRLRWLNYLRPNIKLGGFTKEEDNIICTLFSTIGSRWSFIAAQLPGRTDNDVKNHWNTKLKKKYVAGNSSTDNNIYTFNNTTSSDYFSSTLTFQPQLEAPFVFDQKPNTPCFDSYKFLDLQETPINNIPLPIKMESEAFYTGSSLSSSCSTTPTTKEISSFSSATFLEDQNNDNQCFEYDHDDAILLEMFLDDLLN*