Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001470 | XP_003620925.1 | 91.033 | 368 | 33 | 0 | 1 | 368 | 1 | 368 | 0.0 | 700 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001470 | sp|F4K933|ET2_ARATH | 41.534 | 378 | 187 | 10 | 1 | 365 | 15 | 371 | 1.03e-83 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001470 | G7KJT8 | 91.033 | 368 | 33 | 0 | 1 | 368 | 1 | 368 | 0.0 | 700 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1001470 | TF | HRT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001470 | MtrunA17_Chr6g0488451 | 91.033 | 368 | 33 | 0 | 1 | 368 | 1 | 368 | 0.0 | 700 |
| Msa1001470 | MtrunA17_Chr7g0256351 | 72.922 | 373 | 90 | 2 | 2 | 363 | 6 | 378 | 0.0 | 544 |
| Msa1001470 | MtrunA17_Chr6g0488431 | 65.766 | 111 | 33 | 1 | 1 | 111 | 3 | 108 | 7.60e-43 | 145 |
| Msa1001470 | MtrunA17_Chr6g0488421 | 44.167 | 120 | 52 | 2 | 121 | 226 | 22 | 140 | 5.32e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001470 | AT5G56780.1 | 41.534 | 378 | 187 | 10 | 1 | 365 | 15 | 371 | 1.05e-84 | 265 |
| Msa1001470 | AT5G56780.1 | 36.364 | 110 | 65 | 3 | 258 | 367 | 337 | 441 | 9.76e-11 | 63.5 |
| Msa1001470 | AT5G56770.1 | 35.294 | 238 | 114 | 6 | 1 | 238 | 54 | 251 | 1.51e-34 | 128 |
| Msa1001470 | AT4G26170.1 | 33.708 | 178 | 96 | 4 | 191 | 364 | 234 | 393 | 2.27e-18 | 86.7 |
| Msa1001470 | AT4G26170.1 | 33.113 | 151 | 58 | 4 | 253 | 361 | 355 | 504 | 2.06e-12 | 68.6 |
Find 73 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACATCATGTTTAATATTT+TGG | 0.103204 | 6_4:+85256390 | None:intergenic |
| TAAAATTTGTGGAGTGATTT+TGG | 0.187241 | 6_4:-85256531 | Msa1001470:CDS |
| GGCAACATGCTTGATTTAAT+TGG | 0.190041 | 6_4:+85256683 | None:intergenic |
| CGAGTAGTTGTGGTTTATTT+AGG | 0.242234 | 6_4:-85257560 | Msa1001470:CDS |
| AATTGGTTTCAGATTCTTAT+TGG | 0.254920 | 6_4:-85257746 | Msa1001470:intron |
| ATCAATTATTTCTAATTAAT+AGG | 0.256718 | 6_4:+85256203 | None:intergenic |
| CCATAACCTGCCACAAAATT+CGG | 0.260199 | 6_4:-85257666 | Msa1001470:CDS |
| AATTCCACATATAATAGTTT+TGG | 0.286040 | 6_4:+85256319 | None:intergenic |
| GTTTCCCAATTGTTTATAGA+TGG | 0.290530 | 6_4:-85257406 | Msa1001470:CDS |
| TGGACAACCTTCCTTTCCTT+TGG | 0.290544 | 6_4:+85257700 | None:intergenic |
| TGTAGAAGACAACCAGTTAA+AGG | 0.297867 | 6_4:-85256275 | Msa1001470:CDS |
| TAATAATGGTCCACGGCGTC+CGG | 0.310710 | 6_4:-85256807 | Msa1001470:CDS |
| GTTGTATCTTGAACTATCTT+AGG | 0.319694 | 6_4:+85256578 | None:intergenic |
| TGGTAGAAATGGAGCTCATT+TGG | 0.329770 | 6_4:-85257501 | Msa1001470:CDS |
| CATAACCTGCCACAAAATTC+GGG | 0.337276 | 6_4:-85257665 | Msa1001470:CDS |
| AGTGAAGGGTAGAAGTGATT+TGG | 0.349328 | 6_4:+85256724 | None:intergenic |
| TTCTTATTGGTCCTTCTGAT+TGG | 0.353606 | 6_4:-85257733 | Msa1001470:CDS |
| TCGGATTTGTTATCTTTCAT+AGG | 0.354876 | 6_4:+85256662 | None:intergenic |
| CTCCAATGTTATGGTAGAAA+TGG | 0.355200 | 6_4:-85257512 | Msa1001470:CDS |
| AGCTCTGTCGACTAGCGGTT+TGG | 0.358465 | 6_4:-85257618 | Msa1001470:CDS |
| GAAACAATGAACGTCCCTTT+TGG | 0.367640 | 6_4:+85257447 | None:intergenic |
| AAAAGATGTCATGAACATAA+AGG | 0.370970 | 6_4:-85256248 | Msa1001470:CDS |
| ATGATTCTAGCTTCTCTCAT+TGG | 0.373036 | 6_4:-85258340 | Msa1001470:CDS |
| TTTCATGAAATCTTTCTTCA+AGG | 0.381460 | 6_4:-85257428 | Msa1001470:CDS |
| ATTTGAATCTTCTCACCAAA+AGG | 0.382515 | 6_4:-85257462 | Msa1001470:CDS |
| AGAATTTGAACACGCGAGAT+AGG | 0.386624 | 6_4:+85256612 | None:intergenic |
| GCTTGGAACACAATTAATAA+TGG | 0.386741 | 6_4:-85256821 | Msa1001470:CDS |
| GGAGCCCATCTATAAACAAT+TGG | 0.397811 | 6_4:+85257401 | None:intergenic |
| GGTAGAAATGGAGCTCATTT+GGG | 0.402941 | 6_4:-85257500 | Msa1001470:CDS |
| AGACTCTCAGCCATTGTTTG+TGG | 0.408188 | 6_4:+85256359 | None:intergenic |
| TGAGTACATTTGATTATGCT+TGG | 0.420463 | 6_4:-85256838 | Msa1001470:CDS |
| TCTTATTGGTCCTTCTGATT+GGG | 0.433564 | 6_4:-85257732 | Msa1001470:CDS |
| TGTTTGCAAGGCATCTCCCT+TGG | 0.436980 | 6_4:+85256874 | None:intergenic |
| GCCGCCATTGTCTGCTTCAT+CGG | 0.439254 | 6_4:+85256643 | None:intergenic |
| AAAGATGTCATGAACATAAA+GGG | 0.444185 | 6_4:-85256247 | Msa1001470:CDS |
| GAGAAGAGTGGTAAAATTTG+TGG | 0.450994 | 6_4:-85256542 | Msa1001470:CDS |
| GTTAGGTGTCATGAACATAA+AGG | 0.469142 | 6_4:-85256467 | Msa1001470:CDS |
| AATGGAGCTCATTTGGGTAC+TGG | 0.469766 | 6_4:-85257494 | Msa1001470:CDS |
| TTTCCCAATTGTTTATAGAT+GGG | 0.470064 | 6_4:-85257405 | Msa1001470:CDS |
| AGGTTATGGATTCTATATCT+TGG | 0.470568 | 6_4:+85257680 | None:intergenic |
| AGAACAAGACTCCAATGTTA+TGG | 0.472021 | 6_4:-85257521 | Msa1001470:CDS |
| AATAATGGTCCACGGCGTCC+GGG | 0.492605 | 6_4:-85256806 | Msa1001470:CDS |
| GAGCCCATCTATAAACAATT+GGG | 0.501782 | 6_4:+85257402 | None:intergenic |
| CCTTCACTCAAAAGAAAGTA+GGG | 0.503569 | 6_4:-85256709 | Msa1001470:CDS |
| CTCCATTTCTACCATAACAT+TGG | 0.504477 | 6_4:+85257510 | None:intergenic |
| CTGCCACAAAATTCGGGGCC+GGG | 0.504643 | 6_4:-85257659 | Msa1001470:CDS |
| TTTGAATCTTCTCACCAAAA+GGG | 0.504759 | 6_4:-85257461 | Msa1001470:CDS |
| CCCTTCACTCAAAAGAAAGT+AGG | 0.510670 | 6_4:-85256710 | Msa1001470:CDS |
| CGACTTGCATCGAGTAGTTG+TGG | 0.511029 | 6_4:-85257570 | Msa1001470:CDS |
| AACTGGTTGTCTTCTACAAG+TGG | 0.517479 | 6_4:+85256280 | None:intergenic |
| GTCACCAAAACTATTATATG+TGG | 0.524845 | 6_4:-85256323 | Msa1001470:CDS |
| CCTGCCACAAAATTCGGGGC+CGG | 0.531387 | 6_4:-85257660 | Msa1001470:CDS |
| TAGTTGAGATTCTGTTTGCA+AGG | 0.542581 | 6_4:+85256862 | None:intergenic |
| GACTACTCCAAAGGAAAGGA+AGG | 0.558934 | 6_4:-85257707 | Msa1001470:CDS |
| TTCTAGCTTCTCTCATTGGA+AGG | 0.570435 | 6_4:-85258336 | Msa1001470:intron |
| GGGCCGGGAGTCTATGAGCT+CGG | 0.581169 | 6_4:-85257644 | Msa1001470:CDS |
| GAGTAGTCTTCCCAATCAGA+AGG | 0.582452 | 6_4:+85257722 | None:intergenic |
| GTTGAACAGATGCAGACCAA+GGG | 0.612709 | 6_4:-85256890 | Msa1001470:intron |
| GGAAGACTACTCCAAAGGAA+AGG | 0.612749 | 6_4:-85257711 | Msa1001470:CDS |
| TGAAGATCTTCCACAAACAA+TGG | 0.618416 | 6_4:-85256369 | Msa1001470:CDS |
| TGTTGAACAGATGCAGACCA+AGG | 0.619532 | 6_4:-85256891 | Msa1001470:intron |
| ACTCCGAGCTCATAGACTCC+CGG | 0.622890 | 6_4:+85257641 | None:intergenic |
| AGAATATCACCCGGACGCCG+TGG | 0.625598 | 6_4:+85256797 | None:intergenic |
| GATTGGGAAGACTACTCCAA+AGG | 0.629735 | 6_4:-85257716 | Msa1001470:CDS |
| TTCTATTTGTACAAATACGC+CGG | 0.636888 | 6_4:-85256501 | Msa1001470:CDS |
| GGAGTAGCTCTGTCGACTAG+CGG | 0.648422 | 6_4:-85257623 | Msa1001470:CDS |
| CACAACTACTCGATGCAAGT+CGG | 0.662201 | 6_4:+85257571 | None:intergenic |
| ACACAATTAATAATGGTCCA+CGG | 0.669239 | 6_4:-85256814 | Msa1001470:CDS |
| TCCGATGAAGCAGACAATGG+CGG | 0.674520 | 6_4:-85256644 | Msa1001470:CDS |
| AAATCCGATGAAGCAGACAA+TGG | 0.675612 | 6_4:-85256647 | Msa1001470:CDS |
| AGTATTTCAAGAATATCACC+CGG | 0.675652 | 6_4:+85256788 | None:intergenic |
| GAACTATCTTAGGAAGCGAG+CGG | 0.698053 | 6_4:+85256588 | None:intergenic |
| ATAACCTGCCACAAAATTCG+GGG | 0.720063 | 6_4:-85257664 | Msa1001470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAATTAATAGATTAG+AGG | + | chr6_4:85256295-85256314 | None:intergenic | 10.0% |
| !! | ATAATCAATATATATGTATT+CGG | + | chr6_4:85256812-85256831 | None:intergenic | 10.0% |
| !!! | TCATTTATATTTAATCTTTT+GGG | + | chr6_4:85257614-85257633 | None:intergenic | 10.0% |
| !!! | TTCATTTATATTTAATCTTT+TGG | + | chr6_4:85257615-85257634 | None:intergenic | 10.0% |
| !! | AATTAAAATTAATAGATTAG+AGG | + | chr6_4:85256295-85256314 | None:intergenic | 10.0% |
| !! | ATAATCAATATATATGTATT+CGG | + | chr6_4:85256812-85256831 | None:intergenic | 10.0% |
| !!! | TCATTTATATTTAATCTTTT+GGG | + | chr6_4:85257614-85257633 | None:intergenic | 10.0% |
| !!! | TTCATTTATATTTAATCTTT+TGG | + | chr6_4:85257615-85257634 | None:intergenic | 10.0% |
| !!! | TGTTTTTGAATCTAAAAATA+CGG | - | chr6_4:85256707-85256726 | Msa1001470:CDS | 15.0% |
| !! | TGATTATTCATGTTAATAAT+TGG | - | chr6_4:85256825-85256844 | Msa1001470:CDS | 15.0% |
| !!! | TGTTTTTGAATCTAAAAATA+CGG | - | chr6_4:85256707-85256726 | Msa1001470:CDS | 15.0% |
| !! | TGATTATTCATGTTAATAAT+TGG | - | chr6_4:85256825-85256844 | Msa1001470:CDS | 15.0% |
| !! | AATCAAACTGTGTAAATAAT+AGG | + | chr6_4:85256399-85256418 | None:intergenic | 20.0% |
| !! | ACTGAAAAATATCAAACTAA+AGG | - | chr6_4:85256593-85256612 | Msa1001470:CDS | 20.0% |
| !! | CTGAAAAATATCAAACTAAA+GGG | - | chr6_4:85256594-85256613 | Msa1001470:CDS | 20.0% |
| !!! | TGCTCATATTTAAAACTATT+TGG | + | chr6_4:85256743-85256762 | None:intergenic | 20.0% |
| !! | ATAATATGTATCTCAAATCA+TGG | + | chr6_4:85257354-85257373 | None:intergenic | 20.0% |
| !! | AATTAAGAGCTAAGTTATAT+AGG | - | chr6_4:85257435-85257454 | Msa1001470:CDS | 20.0% |
| !!! | CAACATCATGTTTAATATTT+TGG | + | chr6_4:85258201-85258220 | None:intergenic | 20.0% |
| !!! | AATTCCACATATAATAGTTT+TGG | + | chr6_4:85258272-85258291 | None:intergenic | 20.0% |
| !! | AATCAAACTGTGTAAATAAT+AGG | + | chr6_4:85256399-85256418 | None:intergenic | 20.0% |
| !! | ACTGAAAAATATCAAACTAA+AGG | - | chr6_4:85256593-85256612 | Msa1001470:CDS | 20.0% |
| !! | CTGAAAAATATCAAACTAAA+GGG | - | chr6_4:85256594-85256613 | Msa1001470:CDS | 20.0% |
| !!! | TGCTCATATTTAAAACTATT+TGG | + | chr6_4:85256743-85256762 | None:intergenic | 20.0% |
| !! | ATAATATGTATCTCAAATCA+TGG | + | chr6_4:85257354-85257373 | None:intergenic | 20.0% |
| !! | AATTAAGAGCTAAGTTATAT+AGG | - | chr6_4:85257435-85257454 | Msa1001470:CDS | 20.0% |
| !!! | CAACATCATGTTTAATATTT+TGG | + | chr6_4:85258201-85258220 | None:intergenic | 20.0% |
| !!! | AATTCCACATATAATAGTTT+TGG | + | chr6_4:85258272-85258291 | None:intergenic | 20.0% |
| !! | AATTGGTTTCAGATTCTTAT+TGG | - | chr6_4:85256842-85256861 | Msa1001470:CDS | 25.0% |
| ! | TTTCATGAAATCTTTCTTCA+AGG | - | chr6_4:85257160-85257179 | Msa1001470:intron | 25.0% |
| ! | TTTCCCAATTGTTTATAGAT+GGG | - | chr6_4:85257183-85257202 | Msa1001470:intron | 25.0% |
| ! | CAAAATGAGCATTTACAATA+TGG | + | chr6_4:85257325-85257344 | None:intergenic | 25.0% |
| !! | TAAAATTTGTGGAGTGATTT+TGG | - | chr6_4:85258057-85258076 | Msa1001470:intron | 25.0% |
| !!! | TGTGGAATTATTTTGAAAGA+TGG | - | chr6_4:85258283-85258302 | Msa1001470:intron | 25.0% |
| ! | AAAAGATGTCATGAACATAA+AGG | - | chr6_4:85258340-85258359 | Msa1001470:CDS | 25.0% |
| ! | AAAGATGTCATGAACATAAA+GGG | - | chr6_4:85258341-85258360 | Msa1001470:CDS | 25.0% |
| !! | AATTGGTTTCAGATTCTTAT+TGG | - | chr6_4:85256842-85256861 | Msa1001470:CDS | 25.0% |
| ! | TTTCATGAAATCTTTCTTCA+AGG | - | chr6_4:85257160-85257179 | Msa1001470:intron | 25.0% |
| ! | TTTCCCAATTGTTTATAGAT+GGG | - | chr6_4:85257183-85257202 | Msa1001470:intron | 25.0% |
| ! | CAAAATGAGCATTTACAATA+TGG | + | chr6_4:85257325-85257344 | None:intergenic | 25.0% |
| !! | TAAAATTTGTGGAGTGATTT+TGG | - | chr6_4:85258057-85258076 | Msa1001470:intron | 25.0% |
| !!! | TGTGGAATTATTTTGAAAGA+TGG | - | chr6_4:85258283-85258302 | Msa1001470:intron | 25.0% |
| ! | AAAAGATGTCATGAACATAA+AGG | - | chr6_4:85258340-85258359 | Msa1001470:CDS | 25.0% |
| ! | AAAGATGTCATGAACATAAA+GGG | - | chr6_4:85258341-85258360 | Msa1001470:CDS | 25.0% |
| !!! | TTTCAGCTAAGTCATTTTTC+TGG | - | chr6_4:85256462-85256481 | Msa1001470:CDS | 30.0% |
| !!! | TTCAGCTAAGTCATTTTTCT+GGG | - | chr6_4:85256463-85256482 | Msa1001470:CDS | 30.0% |
| TTAAATATGAGCAGTCTGAT+TGG | - | chr6_4:85256750-85256769 | Msa1001470:CDS | 30.0% | |
| AGGTTATGGATTCTATATCT+TGG | + | chr6_4:85256911-85256930 | None:intergenic | 30.0% | |
| ATTTGAATCTTCTCACCAAA+AGG | - | chr6_4:85257126-85257145 | Msa1001470:intron | 30.0% | |
| TTTGAATCTTCTCACCAAAA+GGG | - | chr6_4:85257127-85257146 | Msa1001470:intron | 30.0% | |
| GTTTCCCAATTGTTTATAGA+TGG | - | chr6_4:85257182-85257201 | Msa1001470:intron | 30.0% | |
| AATGCATGAAATGTACTTAC+AGG | + | chr6_4:85257211-85257230 | None:intergenic | 30.0% | |
| AGAGCTAAGTTATATAGGTT+TGG | - | chr6_4:85257440-85257459 | Msa1001470:CDS | 30.0% | |
| TTATATAGGTTTGGAAGTCT+AGG | - | chr6_4:85257449-85257468 | Msa1001470:CDS | 30.0% | |
| GAGTTAATCGATTAAGTCTT+TGG | - | chr6_4:85257517-85257536 | Msa1001470:CDS | 30.0% | |
| TGAGTACATTTGATTATGCT+TGG | - | chr6_4:85257750-85257769 | Msa1001470:intron | 30.0% | |
| GCTTGGAACACAATTAATAA+TGG | - | chr6_4:85257767-85257786 | Msa1001470:intron | 30.0% | |
| ACACAATTAATAATGGTCCA+CGG | - | chr6_4:85257774-85257793 | Msa1001470:intron | 30.0% | |
| AGTATTTCAAGAATATCACC+CGG | + | chr6_4:85257803-85257822 | None:intergenic | 30.0% | |
| !! | TCGGATTTGTTATCTTTCAT+AGG | + | chr6_4:85257929-85257948 | None:intergenic | 30.0% |
| GTTGTATCTTGAACTATCTT+AGG | + | chr6_4:85258013-85258032 | None:intergenic | 30.0% | |
| ! | AATTTTACCACTCTTCTCAA+CGG | + | chr6_4:85258044-85258063 | None:intergenic | 30.0% |
| TTCTATTTGTACAAATACGC+CGG | - | chr6_4:85258087-85258106 | Msa1001470:intron | 30.0% | |
| GTCACCAAAACTATTATATG+TGG | - | chr6_4:85258265-85258284 | Msa1001470:intron | 30.0% | |
| ! | CATCTTTTTCTTCCTTTAAC+TGG | + | chr6_4:85258328-85258347 | None:intergenic | 30.0% |
| !!! | TTTCAGCTAAGTCATTTTTC+TGG | - | chr6_4:85256462-85256481 | Msa1001470:CDS | 30.0% |
| !!! | TTCAGCTAAGTCATTTTTCT+GGG | - | chr6_4:85256463-85256482 | Msa1001470:CDS | 30.0% |
| TTAAATATGAGCAGTCTGAT+TGG | - | chr6_4:85256750-85256769 | Msa1001470:CDS | 30.0% | |
| AGGTTATGGATTCTATATCT+TGG | + | chr6_4:85256911-85256930 | None:intergenic | 30.0% | |
| ATTTGAATCTTCTCACCAAA+AGG | - | chr6_4:85257126-85257145 | Msa1001470:intron | 30.0% | |
| TTTGAATCTTCTCACCAAAA+GGG | - | chr6_4:85257127-85257146 | Msa1001470:intron | 30.0% | |
| GTTTCCCAATTGTTTATAGA+TGG | - | chr6_4:85257182-85257201 | Msa1001470:intron | 30.0% | |
| AATGCATGAAATGTACTTAC+AGG | + | chr6_4:85257211-85257230 | None:intergenic | 30.0% | |
| AGAGCTAAGTTATATAGGTT+TGG | - | chr6_4:85257440-85257459 | Msa1001470:CDS | 30.0% | |
| TTATATAGGTTTGGAAGTCT+AGG | - | chr6_4:85257449-85257468 | Msa1001470:CDS | 30.0% | |
| GAGTTAATCGATTAAGTCTT+TGG | - | chr6_4:85257517-85257536 | Msa1001470:CDS | 30.0% | |
| TGAGTACATTTGATTATGCT+TGG | - | chr6_4:85257750-85257769 | Msa1001470:intron | 30.0% | |
| GCTTGGAACACAATTAATAA+TGG | - | chr6_4:85257767-85257786 | Msa1001470:intron | 30.0% | |
| ACACAATTAATAATGGTCCA+CGG | - | chr6_4:85257774-85257793 | Msa1001470:intron | 30.0% | |
| AGTATTTCAAGAATATCACC+CGG | + | chr6_4:85257803-85257822 | None:intergenic | 30.0% | |
| !! | TCGGATTTGTTATCTTTCAT+AGG | + | chr6_4:85257929-85257948 | None:intergenic | 30.0% |
| GTTGTATCTTGAACTATCTT+AGG | + | chr6_4:85258013-85258032 | None:intergenic | 30.0% | |
| ! | AATTTTACCACTCTTCTCAA+CGG | + | chr6_4:85258044-85258063 | None:intergenic | 30.0% |
| TTCTATTTGTACAAATACGC+CGG | - | chr6_4:85258087-85258106 | Msa1001470:intron | 30.0% | |
| GTCACCAAAACTATTATATG+TGG | - | chr6_4:85258265-85258284 | Msa1001470:intron | 30.0% | |
| ! | CATCTTTTTCTTCCTTTAAC+TGG | + | chr6_4:85258328-85258347 | None:intergenic | 30.0% |
| !! | ATGATTCTAGCTTCTCTCAT+TGG | - | chr6_4:85256248-85256267 | Msa1001470:CDS | 35.0% |
| !!! | TCAGCTAAGTCATTTTTCTG+GGG | - | chr6_4:85256464-85256483 | Msa1001470:CDS | 35.0% |
| TTCTTATTGGTCCTTCTGAT+TGG | - | chr6_4:85256855-85256874 | Msa1001470:CDS | 35.0% | |
| TCTTATTGGTCCTTCTGATT+GGG | - | chr6_4:85256856-85256875 | Msa1001470:CDS | 35.0% | |
| CGAGTAGTTGTGGTTTATTT+AGG | - | chr6_4:85257028-85257047 | Msa1001470:intron | 35.0% | |
| AGAACAAGACTCCAATGTTA+TGG | - | chr6_4:85257067-85257086 | Msa1001470:intron | 35.0% | |
| CTCCAATGTTATGGTAGAAA+TGG | - | chr6_4:85257076-85257095 | Msa1001470:intron | 35.0% | |
| CTCCATTTCTACCATAACAT+TGG | + | chr6_4:85257081-85257100 | None:intergenic | 35.0% | |
| GAGCCCATCTATAAACAATT+GGG | + | chr6_4:85257189-85257208 | None:intergenic | 35.0% | |
| ! | GCAATGGTAATCTAGCATTT+TGG | + | chr6_4:85257297-85257316 | None:intergenic | 35.0% |
| TTACAATATGGTCAAGGCAA+TGG | + | chr6_4:85257313-85257332 | None:intergenic | 35.0% | |
| GAGCATTTACAATATGGTCA+AGG | + | chr6_4:85257319-85257338 | None:intergenic | 35.0% | |
| ATCGATTAACTCACAACAAG+AGG | + | chr6_4:85257509-85257528 | None:intergenic | 35.0% | |
| TAGTTGAGATTCTGTTTGCA+AGG | + | chr6_4:85257729-85257748 | None:intergenic | 35.0% | |
| !! | CCTACTTTCTTTTGAGTGAA+GGG | + | chr6_4:85257881-85257900 | None:intergenic | 35.0% |
| CCTTCACTCAAAAGAAAGTA+GGG | - | chr6_4:85257879-85257898 | Msa1001470:intron | 35.0% | |
| GGCAACATGCTTGATTTAAT+TGG | + | chr6_4:85257908-85257927 | None:intergenic | 35.0% | |
| GAGAAGAGTGGTAAAATTTG+TGG | - | chr6_4:85258046-85258065 | Msa1001470:intron | 35.0% | |
| ! | GTTAGGTGTCATGAACATAA+AGG | - | chr6_4:85258121-85258140 | Msa1001470:intron | 35.0% |
| TCCAAGTCAGAATCAAAAAG+AGG | - | chr6_4:85258160-85258179 | Msa1001470:intron | 35.0% | |
| !! | TCCTCTTTTTGATTCTGACT+TGG | + | chr6_4:85258164-85258183 | None:intergenic | 35.0% |
| CAAAAAGAGGAAATGCTTGT+AGG | - | chr6_4:85258173-85258192 | Msa1001470:intron | 35.0% | |
| TGAAGATCTTCCACAAACAA+TGG | - | chr6_4:85258219-85258238 | Msa1001470:intron | 35.0% | |
| TGTAGAAGACAACCAGTTAA+AGG | - | chr6_4:85258313-85258332 | Msa1001470:intron | 35.0% | |
| !! | ATGATTCTAGCTTCTCTCAT+TGG | - | chr6_4:85256248-85256267 | Msa1001470:CDS | 35.0% |
| !!! | TCAGCTAAGTCATTTTTCTG+GGG | - | chr6_4:85256464-85256483 | Msa1001470:CDS | 35.0% |
| TTCTTATTGGTCCTTCTGAT+TGG | - | chr6_4:85256855-85256874 | Msa1001470:CDS | 35.0% | |
| TCTTATTGGTCCTTCTGATT+GGG | - | chr6_4:85256856-85256875 | Msa1001470:CDS | 35.0% | |
| CGAGTAGTTGTGGTTTATTT+AGG | - | chr6_4:85257028-85257047 | Msa1001470:intron | 35.0% | |
| AGAACAAGACTCCAATGTTA+TGG | - | chr6_4:85257067-85257086 | Msa1001470:intron | 35.0% | |
| CTCCAATGTTATGGTAGAAA+TGG | - | chr6_4:85257076-85257095 | Msa1001470:intron | 35.0% | |
| CTCCATTTCTACCATAACAT+TGG | + | chr6_4:85257081-85257100 | None:intergenic | 35.0% | |
| GAGCCCATCTATAAACAATT+GGG | + | chr6_4:85257189-85257208 | None:intergenic | 35.0% | |
| ! | GCAATGGTAATCTAGCATTT+TGG | + | chr6_4:85257297-85257316 | None:intergenic | 35.0% |
| TTACAATATGGTCAAGGCAA+TGG | + | chr6_4:85257313-85257332 | None:intergenic | 35.0% | |
| GAGCATTTACAATATGGTCA+AGG | + | chr6_4:85257319-85257338 | None:intergenic | 35.0% | |
| ATCGATTAACTCACAACAAG+AGG | + | chr6_4:85257509-85257528 | None:intergenic | 35.0% | |
| TAGTTGAGATTCTGTTTGCA+AGG | + | chr6_4:85257729-85257748 | None:intergenic | 35.0% | |
| !! | CCTACTTTCTTTTGAGTGAA+GGG | + | chr6_4:85257881-85257900 | None:intergenic | 35.0% |
| CCTTCACTCAAAAGAAAGTA+GGG | - | chr6_4:85257879-85257898 | Msa1001470:intron | 35.0% | |
| GGCAACATGCTTGATTTAAT+TGG | + | chr6_4:85257908-85257927 | None:intergenic | 35.0% | |
| GAGAAGAGTGGTAAAATTTG+TGG | - | chr6_4:85258046-85258065 | Msa1001470:intron | 35.0% | |
| ! | GTTAGGTGTCATGAACATAA+AGG | - | chr6_4:85258121-85258140 | Msa1001470:intron | 35.0% |
| TCCAAGTCAGAATCAAAAAG+AGG | - | chr6_4:85258160-85258179 | Msa1001470:intron | 35.0% | |
| !! | TCCTCTTTTTGATTCTGACT+TGG | + | chr6_4:85258164-85258183 | None:intergenic | 35.0% |
| CAAAAAGAGGAAATGCTTGT+AGG | - | chr6_4:85258173-85258192 | Msa1001470:intron | 35.0% | |
| TGAAGATCTTCCACAAACAA+TGG | - | chr6_4:85258219-85258238 | Msa1001470:intron | 35.0% | |
| TGTAGAAGACAACCAGTTAA+AGG | - | chr6_4:85258313-85258332 | Msa1001470:intron | 35.0% | |
| !! | TTCTAGCTTCTCTCATTGGA+AGG | - | chr6_4:85256252-85256271 | Msa1001470:CDS | 40.0% |
| AGCAGTCTGATTGGATTCAA+TGG | - | chr6_4:85256759-85256778 | Msa1001470:CDS | 40.0% | |
| CCATAACCTGCCACAAAATT+CGG | - | chr6_4:85256922-85256941 | Msa1001470:intron | 40.0% | |
| CATAACCTGCCACAAAATTC+GGG | - | chr6_4:85256923-85256942 | Msa1001470:intron | 40.0% | |
| ATAACCTGCCACAAAATTCG+GGG | - | chr6_4:85256924-85256943 | Msa1001470:intron | 40.0% | |
| TGGTAGAAATGGAGCTCATT+TGG | - | chr6_4:85257087-85257106 | Msa1001470:intron | 40.0% | |
| GGTAGAAATGGAGCTCATTT+GGG | - | chr6_4:85257088-85257107 | Msa1001470:intron | 40.0% | |
| ! | GAAACAATGAACGTCCCTTT+TGG | + | chr6_4:85257144-85257163 | None:intergenic | 40.0% |
| GGAGCCCATCTATAAACAAT+TGG | + | chr6_4:85257190-85257209 | None:intergenic | 40.0% | |
| AGTGAAGGGTAGAAGTGATT+TGG | + | chr6_4:85257867-85257886 | None:intergenic | 40.0% | |
| CCCTTCACTCAAAAGAAAGT+AGG | - | chr6_4:85257878-85257897 | Msa1001470:intron | 40.0% | |
| !! | CCCTACTTTCTTTTGAGTGA+AGG | + | chr6_4:85257882-85257901 | None:intergenic | 40.0% |
| AAATCCGATGAAGCAGACAA+TGG | - | chr6_4:85257941-85257960 | Msa1001470:intron | 40.0% | |
| AGAATTTGAACACGCGAGAT+AGG | + | chr6_4:85257979-85257998 | None:intergenic | 40.0% | |
| ! | GATTTTTCCGTTGAGAAGAG+TGG | - | chr6_4:85258034-85258053 | Msa1001470:intron | 40.0% |
| ! | TGTGGAGTGATTTTGGATGA+TGG | - | chr6_4:85258064-85258083 | Msa1001470:intron | 40.0% |
| !!! | CACCTAACTCTTTTTTCGAC+CGG | + | chr6_4:85258109-85258128 | None:intergenic | 40.0% |
| AACTGGTTGTCTTCTACAAG+TGG | + | chr6_4:85258311-85258330 | None:intergenic | 40.0% | |
| !! | TTCTAGCTTCTCTCATTGGA+AGG | - | chr6_4:85256252-85256271 | Msa1001470:CDS | 40.0% |
| AGCAGTCTGATTGGATTCAA+TGG | - | chr6_4:85256759-85256778 | Msa1001470:CDS | 40.0% | |
| CCATAACCTGCCACAAAATT+CGG | - | chr6_4:85256922-85256941 | Msa1001470:intron | 40.0% | |
| CATAACCTGCCACAAAATTC+GGG | - | chr6_4:85256923-85256942 | Msa1001470:intron | 40.0% | |
| ATAACCTGCCACAAAATTCG+GGG | - | chr6_4:85256924-85256943 | Msa1001470:intron | 40.0% | |
| TGGTAGAAATGGAGCTCATT+TGG | - | chr6_4:85257087-85257106 | Msa1001470:intron | 40.0% | |
| GGTAGAAATGGAGCTCATTT+GGG | - | chr6_4:85257088-85257107 | Msa1001470:intron | 40.0% | |
| ! | GAAACAATGAACGTCCCTTT+TGG | + | chr6_4:85257144-85257163 | None:intergenic | 40.0% |
| GGAGCCCATCTATAAACAAT+TGG | + | chr6_4:85257190-85257209 | None:intergenic | 40.0% | |
| AGTGAAGGGTAGAAGTGATT+TGG | + | chr6_4:85257867-85257886 | None:intergenic | 40.0% | |
| CCCTTCACTCAAAAGAAAGT+AGG | - | chr6_4:85257878-85257897 | Msa1001470:intron | 40.0% | |
| !! | CCCTACTTTCTTTTGAGTGA+AGG | + | chr6_4:85257882-85257901 | None:intergenic | 40.0% |
| AAATCCGATGAAGCAGACAA+TGG | - | chr6_4:85257941-85257960 | Msa1001470:intron | 40.0% | |
| AGAATTTGAACACGCGAGAT+AGG | + | chr6_4:85257979-85257998 | None:intergenic | 40.0% | |
| ! | GATTTTTCCGTTGAGAAGAG+TGG | - | chr6_4:85258034-85258053 | Msa1001470:intron | 40.0% |
| ! | TGTGGAGTGATTTTGGATGA+TGG | - | chr6_4:85258064-85258083 | Msa1001470:intron | 40.0% |
| !!! | CACCTAACTCTTTTTTCGAC+CGG | + | chr6_4:85258109-85258128 | None:intergenic | 40.0% |
| AACTGGTTGTCTTCTACAAG+TGG | + | chr6_4:85258311-85258330 | None:intergenic | 40.0% | |
| TCACGCTGTCAAGACATTGT+TGG | - | chr6_4:85256645-85256664 | Msa1001470:CDS | 45.0% | |
| GAGTAGTCTTCCCAATCAGA+AGG | + | chr6_4:85256869-85256888 | None:intergenic | 45.0% | |
| GATTGGGAAGACTACTCCAA+AGG | - | chr6_4:85256872-85256891 | Msa1001470:CDS | 45.0% | |
| GGAAGACTACTCCAAAGGAA+AGG | - | chr6_4:85256877-85256896 | Msa1001470:CDS | 45.0% | |
| GACTACTCCAAAGGAAAGGA+AGG | - | chr6_4:85256881-85256900 | Msa1001470:CDS | 45.0% | |
| TGGACAACCTTCCTTTCCTT+TGG | + | chr6_4:85256891-85256910 | None:intergenic | 45.0% | |
| ! | CCGAATTTTGTGGCAGGTTA+TGG | + | chr6_4:85256925-85256944 | None:intergenic | 45.0% |
| CACAACTACTCGATGCAAGT+CGG | + | chr6_4:85257020-85257039 | None:intergenic | 45.0% | |
| AATGGAGCTCATTTGGGTAC+TGG | - | chr6_4:85257094-85257113 | Msa1001470:intron | 45.0% | |
| TGTTGAACAGATGCAGACCA+AGG | - | chr6_4:85257697-85257716 | Msa1001470:CDS | 45.0% | |
| GTTGAACAGATGCAGACCAA+GGG | - | chr6_4:85257698-85257717 | Msa1001470:CDS | 45.0% | |
| GAACTATCTTAGGAAGCGAG+CGG | + | chr6_4:85258003-85258022 | None:intergenic | 45.0% | |
| AGACTCTCAGCCATTGTTTG+TGG | + | chr6_4:85258232-85258251 | None:intergenic | 45.0% | |
| TCACGCTGTCAAGACATTGT+TGG | - | chr6_4:85256645-85256664 | Msa1001470:CDS | 45.0% | |
| GAGTAGTCTTCCCAATCAGA+AGG | + | chr6_4:85256869-85256888 | None:intergenic | 45.0% | |
| GATTGGGAAGACTACTCCAA+AGG | - | chr6_4:85256872-85256891 | Msa1001470:CDS | 45.0% | |
| GGAAGACTACTCCAAAGGAA+AGG | - | chr6_4:85256877-85256896 | Msa1001470:CDS | 45.0% | |
| GACTACTCCAAAGGAAAGGA+AGG | - | chr6_4:85256881-85256900 | Msa1001470:CDS | 45.0% | |
| TGGACAACCTTCCTTTCCTT+TGG | + | chr6_4:85256891-85256910 | None:intergenic | 45.0% | |
| ! | CCGAATTTTGTGGCAGGTTA+TGG | + | chr6_4:85256925-85256944 | None:intergenic | 45.0% |
| CACAACTACTCGATGCAAGT+CGG | + | chr6_4:85257020-85257039 | None:intergenic | 45.0% | |
| AATGGAGCTCATTTGGGTAC+TGG | - | chr6_4:85257094-85257113 | Msa1001470:intron | 45.0% | |
| TGTTGAACAGATGCAGACCA+AGG | - | chr6_4:85257697-85257716 | Msa1001470:CDS | 45.0% | |
| GTTGAACAGATGCAGACCAA+GGG | - | chr6_4:85257698-85257717 | Msa1001470:CDS | 45.0% | |
| GAACTATCTTAGGAAGCGAG+CGG | + | chr6_4:85258003-85258022 | None:intergenic | 45.0% | |
| AGACTCTCAGCCATTGTTTG+TGG | + | chr6_4:85258232-85258251 | None:intergenic | 45.0% | |
| CGACTTGCATCGAGTAGTTG+TGG | - | chr6_4:85257018-85257037 | Msa1001470:intron | 50.0% | |
| ! | TGTTTGCAAGGCATCTCCCT+TGG | + | chr6_4:85257717-85257736 | None:intergenic | 50.0% |
| TAATAATGGTCCACGGCGTC+CGG | - | chr6_4:85257781-85257800 | Msa1001470:intron | 50.0% | |
| TCCGATGAAGCAGACAATGG+CGG | - | chr6_4:85257944-85257963 | Msa1001470:intron | 50.0% | |
| CGCCGGTCGAAAAAAGAGTT+AGG | - | chr6_4:85258104-85258123 | Msa1001470:intron | 50.0% | |
| CGACTTGCATCGAGTAGTTG+TGG | - | chr6_4:85257018-85257037 | Msa1001470:intron | 50.0% | |
| ! | TGTTTGCAAGGCATCTCCCT+TGG | + | chr6_4:85257717-85257736 | None:intergenic | 50.0% |
| TAATAATGGTCCACGGCGTC+CGG | - | chr6_4:85257781-85257800 | Msa1001470:intron | 50.0% | |
| TCCGATGAAGCAGACAATGG+CGG | - | chr6_4:85257944-85257963 | Msa1001470:intron | 50.0% | |
| CGCCGGTCGAAAAAAGAGTT+AGG | - | chr6_4:85258104-85258123 | Msa1001470:intron | 50.0% | |
| ACTCCGAGCTCATAGACTCC+CGG | + | chr6_4:85256950-85256969 | None:intergenic | 55.0% | |
| ! | GGAGTAGCTCTGTCGACTAG+CGG | - | chr6_4:85256965-85256984 | Msa1001470:intron | 55.0% |
| ! | AGCTCTGTCGACTAGCGGTT+TGG | - | chr6_4:85256970-85256989 | Msa1001470:intron | 55.0% |
| ! | GCTCTGTCGACTAGCGGTTT+GGG | - | chr6_4:85256971-85256990 | Msa1001470:intron | 55.0% |
| AATAATGGTCCACGGCGTCC+GGG | - | chr6_4:85257782-85257801 | Msa1001470:intron | 55.0% | |
| GCCGCCATTGTCTGCTTCAT+CGG | + | chr6_4:85257948-85257967 | None:intergenic | 55.0% | |
| ACTCCGAGCTCATAGACTCC+CGG | + | chr6_4:85256950-85256969 | None:intergenic | 55.0% | |
| ! | GGAGTAGCTCTGTCGACTAG+CGG | - | chr6_4:85256965-85256984 | Msa1001470:intron | 55.0% |
| ! | AGCTCTGTCGACTAGCGGTT+TGG | - | chr6_4:85256970-85256989 | Msa1001470:intron | 55.0% |
| ! | GCTCTGTCGACTAGCGGTTT+GGG | - | chr6_4:85256971-85256990 | Msa1001470:intron | 55.0% |
| AATAATGGTCCACGGCGTCC+GGG | - | chr6_4:85257782-85257801 | Msa1001470:intron | 55.0% | |
| GCCGCCATTGTCTGCTTCAT+CGG | + | chr6_4:85257948-85257967 | None:intergenic | 55.0% | |
| CCTGCCACAAAATTCGGGGC+CGG | - | chr6_4:85256928-85256947 | Msa1001470:intron | 60.0% | |
| CTGCCACAAAATTCGGGGCC+GGG | - | chr6_4:85256929-85256948 | Msa1001470:intron | 60.0% | |
| ! | ACTCCCGGCCCCGAATTTTG+TGG | + | chr6_4:85256935-85256954 | None:intergenic | 60.0% |
| AGAATATCACCCGGACGCCG+TGG | + | chr6_4:85257794-85257813 | None:intergenic | 60.0% | |
| CCTGCCACAAAATTCGGGGC+CGG | - | chr6_4:85256928-85256947 | Msa1001470:intron | 60.0% | |
| CTGCCACAAAATTCGGGGCC+GGG | - | chr6_4:85256929-85256948 | Msa1001470:intron | 60.0% | |
| ! | ACTCCCGGCCCCGAATTTTG+TGG | + | chr6_4:85256935-85256954 | None:intergenic | 60.0% |
| AGAATATCACCCGGACGCCG+TGG | + | chr6_4:85257794-85257813 | None:intergenic | 60.0% | |
| ! | CCGGCCCCGAATTTTGTGGC+AGG | + | chr6_4:85256931-85256950 | None:intergenic | 65.0% |
| GGGCCGGGAGTCTATGAGCT+CGG | - | chr6_4:85256944-85256963 | Msa1001470:intron | 65.0% | |
| ! | CCGGCCCCGAATTTTGTGGC+AGG | + | chr6_4:85256931-85256950 | None:intergenic | 65.0% |
| GGGCCGGGAGTCTATGAGCT+CGG | - | chr6_4:85256944-85256963 | Msa1001470:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 85256214 | 85258396 | 85256214 | ID=Msa1001470;Name=Msa1001470 |
| chr6_4 | mRNA | 85256214 | 85258396 | 85256214 | ID=Msa1001470-mRNA-1;Parent=Msa1001470;Name=Msa1001470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|368 |
| chr6_4 | exon | 85258337 | 85258396 | 85258337 | ID=Msa1001470-mRNA-1:exon:16735;Parent=Msa1001470-mRNA-1 |
| chr6_4 | exon | 85257400 | 85257756 | 85257400 | ID=Msa1001470-mRNA-1:exon:16734;Parent=Msa1001470-mRNA-1 |
| chr6_4 | exon | 85256214 | 85256903 | 85256214 | ID=Msa1001470-mRNA-1:exon:16733;Parent=Msa1001470-mRNA-1 |
| chr6_4 | CDS | 85258337 | 85258396 | 85258337 | ID=Msa1001470-mRNA-1:cds;Parent=Msa1001470-mRNA-1 |
| chr6_4 | CDS | 85257400 | 85257756 | 85257400 | ID=Msa1001470-mRNA-1:cds;Parent=Msa1001470-mRNA-1 |
| chr6_4 | CDS | 85256214 | 85256903 | 85256214 | ID=Msa1001470-mRNA-1:cds;Parent=Msa1001470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
