Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001490 | XP_003620925.1 | 81.311 | 305 | 38 | 2 | 46 | 331 | 64 | 368 | 3.65e-177 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001490 | sp|F4K933|ET2_ARATH | 35.238 | 315 | 152 | 10 | 51 | 328 | 72 | 371 | 5.44e-46 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001490 | G7KJT8 | 81.311 | 305 | 38 | 2 | 46 | 331 | 64 | 368 | 1.74e-177 | 505 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1001490 | TF | HRT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001490 | MtrunA17_Chr6g0488451 | 81.311 | 305 | 38 | 2 | 46 | 331 | 64 | 368 | 0.0 | 505 |
| Msa1001490 | MtrunA17_Chr7g0256351 | 63.987 | 311 | 82 | 4 | 46 | 326 | 68 | 378 | 2.08e-131 | 379 |
| Msa1001490 | MtrunA17_Chr6g0488421 | 41.667 | 120 | 46 | 3 | 103 | 199 | 22 | 140 | 2.00e-19 | 89.0 |
| Msa1001490 | MtrunA17_Chr6g0488431 | 60.784 | 51 | 20 | 0 | 43 | 93 | 58 | 108 | 9.24e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001490 | AT5G56780.1 | 35.238 | 315 | 152 | 10 | 51 | 328 | 72 | 371 | 5.53e-47 | 166 |
| Msa1001490 | AT5G56770.1 | 43.529 | 85 | 31 | 2 | 62 | 142 | 129 | 200 | 1.03e-14 | 73.2 |
| Msa1001490 | AT4G26170.1 | 41.509 | 106 | 42 | 4 | 223 | 327 | 307 | 393 | 9.88e-13 | 69.3 |
Find 71 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCATCATGGTTAATATTT+TGG | 0.117540 | 6_4:+85273739 | None:intergenic |
| TATTATATGTGGAATTATTT+TGG | 0.146552 | 6_4:-85273661 | Msa1001490:CDS |
| GGCAACATGCTTGATTTAAT+TGG | 0.190041 | 6_4:+85274031 | None:intergenic |
| TAAAATTAGTGGAGTGATTT+TGG | 0.206198 | 6_4:-85273880 | Msa1001490:CDS |
| CCGAATTTCCTGGTAGGTTA+TGG | 0.223072 | 6_4:+85275110 | None:intergenic |
| ATCAATTATTTCTAATTAAT+AGG | 0.256718 | 6_4:+85273552 | None:intergenic |
| AATTCCACATATAATAGTTT+TGG | 0.286040 | 6_4:+85273668 | None:intergenic |
| TGTACAAAACAACCAGTTAA+AGG | 0.287756 | 6_4:-85273624 | Msa1001490:CDS |
| TGTACAGCCTTCCTTTCCTT+TGG | 0.307211 | 6_4:+85275144 | None:intergenic |
| TGGTAGAAATGGAGCTCATT+TGG | 0.329770 | 6_4:-85274945 | Msa1001490:CDS |
| CCATAACCTACCAGGAAATT+CGG | 0.334546 | 6_4:-85275110 | Msa1001490:CDS |
| CGAATTTCCTGGTAGGTTAT+GGG | 0.336838 | 6_4:+85275111 | None:intergenic |
| AGTGAAGGGTAGAAGTGATT+TGG | 0.349328 | 6_4:+85274072 | None:intergenic |
| TTCTTATTGGTCCTTCTGAT+TGG | 0.353606 | 6_4:-85275177 | Msa1001490:CDS |
| TCGGATTTGTTATCTTTCAT+AGG | 0.354876 | 6_4:+85274010 | None:intergenic |
| CTCCAATGTTATGGTAGAAA+TGG | 0.355200 | 6_4:-85274956 | Msa1001490:CDS |
| ATGATTCTAGCTTCTTTCAT+TGG | 0.358373 | 6_4:-85275849 | Msa1001490:CDS |
| GAAACAATGACCGTCCCTTT+TGG | 0.364941 | 6_4:+85274891 | None:intergenic |
| TGAATTTGAACACGCGAGAT+AGG | 0.369579 | 6_4:+85273960 | None:intergenic |
| AAAAGATGTCATGAACATAA+AGG | 0.370970 | 6_4:-85273597 | Msa1001490:CDS |
| ATTTGAATCTTCTCACCAAA+AGG | 0.382515 | 6_4:-85274906 | Msa1001490:CDS |
| GGTAGAAATGGAGCTCATTT+GGG | 0.389475 | 6_4:-85274944 | Msa1001490:CDS |
| TTTCATGAGATCTTTCTTCA+AGG | 0.405599 | 6_4:-85274872 | Msa1001490:CDS |
| ATGCTCAACAAAATCTCTTC+CGG | 0.410898 | 6_4:-85274118 | Msa1001490:CDS |
| CGAGTAGTTGTGGTTTATCT+AGG | 0.411149 | 6_4:-85275004 | Msa1001490:CDS |
| CATAACCTACCAGGAAATTC+GGG | 0.431049 | 6_4:-85275109 | Msa1001490:CDS |
| TCCTCTTTGTGATTCTGACT+TGG | 0.433383 | 6_4:+85273776 | None:intergenic |
| TCTTATTGGTCCTTCTGATT+GGG | 0.433564 | 6_4:-85275176 | Msa1001490:CDS |
| GGATCCCATCTATAAACAAT+TGG | 0.438162 | 6_4:+85274845 | None:intergenic |
| GAGCATTTCAAGAATATCAC+TGG | 0.439053 | 6_4:+85274135 | None:intergenic |
| GCCGCCATTGTCTGCTTCAT+CGG | 0.439254 | 6_4:+85273991 | None:intergenic |
| AAAGATGTCATGAACATAAA+GGG | 0.444185 | 6_4:-85273596 | Msa1001490:CDS |
| GAGAAGAATGGTAAAATTAG+TGG | 0.448789 | 6_4:-85273891 | Msa1001490:CDS |
| AATGGAGCTCATTTGGGAAA+TGG | 0.456379 | 6_4:-85274938 | Msa1001490:CDS |
| TAGGAAAAGCTGATAATGTA+AGG | 0.463358 | 6_4:-85274985 | Msa1001490:CDS |
| AGGACAAGACTCCAATGTTA+TGG | 0.472021 | 6_4:-85274965 | Msa1001490:CDS |
| TGAGTACATTTGATTATGCT+TGG | 0.472258 | 6_4:-85274186 | Msa1001490:CDS |
| AGACTCTCAACCACGGTTTG+TGG | 0.479457 | 6_4:+85273708 | None:intergenic |
| ACTCCCGGACCCGAATTTCC+TGG | 0.483465 | 6_4:+85275100 | None:intergenic |
| GCTTGGAACACAATTAATAA+CGG | 0.491690 | 6_4:-85274169 | Msa1001490:CDS |
| TTCTAGCTTCTTTCATTGGA+AGG | 0.495725 | 6_4:-85275845 | Msa1001490:intron |
| ATCTGAAAATGTTCTTGTGC+CGG | 0.498102 | 6_4:+85274099 | None:intergenic |
| CCTTCACTCAAAAGAAAGTA+GGG | 0.503569 | 6_4:-85274057 | Msa1001490:CDS |
| CTCCATTTCTACCATAACAT+TGG | 0.504477 | 6_4:+85274954 | None:intergenic |
| TTTGAATCTTCTCACCAAAA+GGG | 0.504759 | 6_4:-85274905 | Msa1001490:CDS |
| GTGGAAGATCTTCAGCATCA+TGG | 0.509588 | 6_4:+85273727 | None:intergenic |
| CCCTTCACTCAAAAGAAAGT+AGG | 0.510670 | 6_4:-85274058 | Msa1001490:CDS |
| TTGACTAGCAGTTTGGGGCG+CGG | 0.514412 | 6_4:-85275055 | Msa1001490:intron |
| ATCACCAAAACTATTATATG+TGG | 0.518025 | 6_4:-85273672 | Msa1001490:CDS |
| CCTACCAGGAAATTCGGGTC+CGG | 0.523668 | 6_4:-85275104 | Msa1001490:CDS |
| CTACCAGGAAATTCGGGTCC+GGG | 0.529284 | 6_4:-85275103 | Msa1001490:CDS |
| GATTGGGAAGATTATTCCAA+AGG | 0.533673 | 6_4:-85275160 | Msa1001490:CDS |
| GGAAGATTATTCCAAAGGAA+AGG | 0.537391 | 6_4:-85275155 | Msa1001490:CDS |
| GATTATTCCAAAGGAAAGGA+AGG | 0.563588 | 6_4:-85275151 | Msa1001490:CDS |
| GAATAATCTTCCCAATCAGA+AGG | 0.571601 | 6_4:+85275166 | None:intergenic |
| CACAACTACTCGACACGAGT+CGG | 0.572516 | 6_4:+85275015 | None:intergenic |
| AGAATATCACTGGGAAGCCG+TGG | 0.590655 | 6_4:+85274145 | None:intergenic |
| ACTCCGAGTTCATAGACTCC+CGG | 0.608999 | 6_4:+85275085 | None:intergenic |
| AATCTTCTCACCAAAAGGGA+CGG | 0.621847 | 6_4:-85274901 | Msa1001490:CDS |
| TCCAAGTCAGAATCACAAAG+AGG | 0.622707 | 6_4:-85273777 | Msa1001490:CDS |
| GGTCCGGGAGTCTATGAACT+CGG | 0.623764 | 6_4:-85275088 | Msa1001490:CDS |
| ACACAATTAATAACGGTCCA+CGG | 0.625427 | 6_4:-85274162 | Msa1001490:CDS |
| TATAGAACCCATAACCTACC+AGG | 0.630335 | 6_4:-85275118 | Msa1001490:CDS |
| TTCTATTTGTACAAATACGC+CGG | 0.636888 | 6_4:-85273850 | Msa1001490:CDS |
| CCGGACCCGAATTTCCTGGT+AGG | 0.637300 | 6_4:+85275104 | None:intergenic |
| AGCATTTCAAGAATATCACT+GGG | 0.640043 | 6_4:+85274136 | None:intergenic |
| AACTACTCGACACGAGTCGG+TGG | 0.649363 | 6_4:+85275018 | None:intergenic |
| TCCGATGAAGCAGACAATGG+CGG | 0.674520 | 6_4:-85273992 | Msa1001490:CDS |
| AAATCCGATGAAGCAGACAA+TGG | 0.675612 | 6_4:-85273995 | Msa1001490:CDS |
| TGAAGATCTTCCACAAACCG+TGG | 0.691630 | 6_4:-85273718 | Msa1001490:CDS |
| ATCAACAAGACTCTCAACCA+CGG | 0.706583 | 6_4:+85273701 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAATTAATAGATTAG+AGG | + | chr6_4:85273610-85273629 | None:intergenic | 10.0% |
| !! | AATTAAAATTAATAGATTAG+AGG | + | chr6_4:85273610-85273629 | None:intergenic | 10.0% |
| !! | CTGAAAAATATTGAATTAAA+TGG | - | chr6_4:85273912-85273931 | Msa1001490:CDS | 15.0% |
| !! | CAAAATTAACATATACAATA+TGG | + | chr6_4:85274705-85274724 | None:intergenic | 15.0% |
| !!! | CATATTGTATATGTTAATTT+TGG | - | chr6_4:85274703-85274722 | Msa1001490:intron | 15.0% |
| !!! | GCATTTATATTTAATCTTTT+TGG | + | chr6_4:85274991-85275010 | None:intergenic | 15.0% |
| !!! | TATTATATGTGGAATTATTT+TGG | - | chr6_4:85275751-85275770 | Msa1001490:intron | 15.0% |
| !! | CTGAAAAATATTGAATTAAA+TGG | - | chr6_4:85273912-85273931 | Msa1001490:CDS | 15.0% |
| !! | CAAAATTAACATATACAATA+TGG | + | chr6_4:85274705-85274724 | None:intergenic | 15.0% |
| !!! | CATATTGTATATGTTAATTT+TGG | - | chr6_4:85274703-85274722 | Msa1001490:intron | 15.0% |
| !!! | GCATTTATATTTAATCTTTT+TGG | + | chr6_4:85274991-85275010 | None:intergenic | 15.0% |
| !!! | TATTATATGTGGAATTATTT+TGG | - | chr6_4:85275751-85275770 | Msa1001490:intron | 15.0% |
| !!! | TGTTAATGCTTAACATTTTT+AGG | - | chr6_4:85273671-85273690 | Msa1001490:CDS | 20.0% |
| !!! | TTTCAGCTAAGTAATTTTTT+GGG | - | chr6_4:85273773-85273792 | Msa1001490:CDS | 20.0% |
| !! | AAAATCAACTTATAGTTGTT+GGG | + | chr6_4:85273841-85273860 | None:intergenic | 20.0% |
| !! | AAAAATCAACTTATAGTTGT+TGG | + | chr6_4:85273842-85273861 | None:intergenic | 20.0% |
| !!! | TTTCACTGTAGATTTTTATT+TGG | - | chr6_4:85274004-85274023 | Msa1001490:CDS | 20.0% |
| !!! | GGTTTTTAGATCTAAAAATA+CGG | - | chr6_4:85274025-85274044 | Msa1001490:CDS | 20.0% |
| !!! | TATTGTTTTCAGATTCTTAT+TGG | - | chr6_4:85274222-85274241 | Msa1001490:intron | 20.0% |
| !!! | TTTTCCAATTGTTTATAGAT+GGG | - | chr6_4:85274563-85274582 | Msa1001490:intron | 20.0% |
| !! | TCAATTTATTAAGATCAAGA+TGG | - | chr6_4:85274625-85274644 | Msa1001490:intron | 20.0% |
| !! | ATAATATGTATCTCAAATCA+TGG | + | chr6_4:85274734-85274753 | None:intergenic | 20.0% |
| !! | TTAATTAAGAGCTAAGTTAT+AGG | - | chr6_4:85274813-85274832 | Msa1001490:intron | 20.0% |
| !!! | AATTCCACATATAATAGTTT+TGG | + | chr6_4:85275747-85275766 | None:intergenic | 20.0% |
| !!! | TGTTAATGCTTAACATTTTT+AGG | - | chr6_4:85273671-85273690 | Msa1001490:CDS | 20.0% |
| !!! | TTTCAGCTAAGTAATTTTTT+GGG | - | chr6_4:85273773-85273792 | Msa1001490:CDS | 20.0% |
| !! | AAAATCAACTTATAGTTGTT+GGG | + | chr6_4:85273841-85273860 | None:intergenic | 20.0% |
| !! | AAAAATCAACTTATAGTTGT+TGG | + | chr6_4:85273842-85273861 | None:intergenic | 20.0% |
| !!! | TTTCACTGTAGATTTTTATT+TGG | - | chr6_4:85274004-85274023 | Msa1001490:CDS | 20.0% |
| !!! | GGTTTTTAGATCTAAAAATA+CGG | - | chr6_4:85274025-85274044 | Msa1001490:CDS | 20.0% |
| !!! | TATTGTTTTCAGATTCTTAT+TGG | - | chr6_4:85274222-85274241 | Msa1001490:intron | 20.0% |
| !!! | TTTTCCAATTGTTTATAGAT+GGG | - | chr6_4:85274563-85274582 | Msa1001490:intron | 20.0% |
| !! | TCAATTTATTAAGATCAAGA+TGG | - | chr6_4:85274625-85274644 | Msa1001490:intron | 20.0% |
| !! | ATAATATGTATCTCAAATCA+TGG | + | chr6_4:85274734-85274753 | None:intergenic | 20.0% |
| !! | TTAATTAAGAGCTAAGTTAT+AGG | - | chr6_4:85274813-85274832 | Msa1001490:intron | 20.0% |
| !!! | AATTCCACATATAATAGTTT+TGG | + | chr6_4:85275747-85275766 | None:intergenic | 20.0% |
| !!! | GTTTCAGCTAAGTAATTTTT+TGG | - | chr6_4:85273772-85273791 | Msa1001490:CDS | 25.0% |
| !!! | TTCAGCTAAGTAATTTTTTG+GGG | - | chr6_4:85273774-85273793 | Msa1001490:CDS | 25.0% |
| ! | TGTGAAGAATGTAAAATTGT+CGG | + | chr6_4:85273949-85273968 | None:intergenic | 25.0% |
| !! | ACAATTTTACATTCTTCACA+CGG | - | chr6_4:85273949-85273968 | Msa1001490:intron | 25.0% |
| !! | GTTTTCCAATTGTTTATAGA+TGG | - | chr6_4:85274562-85274581 | Msa1001490:intron | 25.0% |
| ! | TAACATATACAATATGGTCA+AGG | + | chr6_4:85274699-85274718 | None:intergenic | 25.0% |
| !! | TATGAAGTAAGTATTTTCTC+TGG | - | chr6_4:85274868-85274887 | Msa1001490:CDS | 25.0% |
| !! | AATTTTACCATTCTTCTCAA+TGG | + | chr6_4:85275519-85275538 | None:intergenic | 25.0% |
| !! | TAAAATTAGTGGAGTGATTT+TGG | - | chr6_4:85275532-85275551 | Msa1001490:intron | 25.0% |
| ! | ATCACCAAAACTATTATATG+TGG | - | chr6_4:85275740-85275759 | Msa1001490:intron | 25.0% |
| ! | AAAAGATGTCATGAACATAA+AGG | - | chr6_4:85275815-85275834 | Msa1001490:intron | 25.0% |
| ! | AAAGATGTCATGAACATAAA+GGG | - | chr6_4:85275816-85275835 | Msa1001490:intron | 25.0% |
| !!! | GTTTCAGCTAAGTAATTTTT+TGG | - | chr6_4:85273772-85273791 | Msa1001490:CDS | 25.0% |
| !!! | TTCAGCTAAGTAATTTTTTG+GGG | - | chr6_4:85273774-85273793 | Msa1001490:CDS | 25.0% |
| ! | TGTGAAGAATGTAAAATTGT+CGG | + | chr6_4:85273949-85273968 | None:intergenic | 25.0% |
| !! | ACAATTTTACATTCTTCACA+CGG | - | chr6_4:85273949-85273968 | Msa1001490:intron | 25.0% |
| !! | GTTTTCCAATTGTTTATAGA+TGG | - | chr6_4:85274562-85274581 | Msa1001490:intron | 25.0% |
| ! | TAACATATACAATATGGTCA+AGG | + | chr6_4:85274699-85274718 | None:intergenic | 25.0% |
| !! | TATGAAGTAAGTATTTTCTC+TGG | - | chr6_4:85274868-85274887 | Msa1001490:CDS | 25.0% |
| !! | AATTTTACCATTCTTCTCAA+TGG | + | chr6_4:85275519-85275538 | None:intergenic | 25.0% |
| !! | TAAAATTAGTGGAGTGATTT+TGG | - | chr6_4:85275532-85275551 | Msa1001490:intron | 25.0% |
| ! | ATCACCAAAACTATTATATG+TGG | - | chr6_4:85275740-85275759 | Msa1001490:intron | 25.0% |
| ! | AAAAGATGTCATGAACATAA+AGG | - | chr6_4:85275815-85275834 | Msa1001490:intron | 25.0% |
| ! | AAAGATGTCATGAACATAAA+GGG | - | chr6_4:85275816-85275835 | Msa1001490:intron | 25.0% |
| !! | ATGATTCTAGCTTCTTTCAT+TGG | - | chr6_4:85273563-85273582 | Msa1001490:CDS | 30.0% |
| CATGCATGTATGTATGTATT+CGG | + | chr6_4:85274110-85274129 | None:intergenic | 30.0% | |
| ! | TAGGAAAAGCTGATAATGTA+AGG | - | chr6_4:85274427-85274446 | Msa1001490:intron | 30.0% |
| ATTTGAATCTTCTCACCAAA+AGG | - | chr6_4:85274506-85274525 | Msa1001490:intron | 30.0% | |
| TTTGAATCTTCTCACCAAAA+GGG | - | chr6_4:85274507-85274526 | Msa1001490:intron | 30.0% | |
| TTTCATGAGATCTTTCTTCA+AGG | - | chr6_4:85274540-85274559 | Msa1001490:intron | 30.0% | |
| AATGCATAGAATGTACTTAC+AGG | + | chr6_4:85274591-85274610 | None:intergenic | 30.0% | |
| TAAGAGCTAAGTTATAGGTT+TGG | - | chr6_4:85274818-85274837 | Msa1001490:intron | 30.0% | |
| CACATTTGCATCTTACATAA+AGG | - | chr6_4:85275010-85275029 | Msa1001490:CDS | 30.0% | |
| TGAGTACATTTGATTATGCT+TGG | - | chr6_4:85275226-85275245 | Msa1001490:intron | 30.0% | |
| GCTTGGAACACAATTAATAA+CGG | - | chr6_4:85275243-85275262 | Msa1001490:intron | 30.0% | |
| AGCATTTCAAGAATATCACT+GGG | + | chr6_4:85275279-85275298 | None:intergenic | 30.0% | |
| !! | TCGGATTTGTTATCTTTCAT+AGG | + | chr6_4:85275405-85275424 | None:intergenic | 30.0% |
| GTTGTATCTTGAACTATCTT+AGG | + | chr6_4:85275488-85275507 | None:intergenic | 30.0% | |
| ! | GATTTTTCCATTGAGAAGAA+TGG | - | chr6_4:85275509-85275528 | Msa1001490:intron | 30.0% |
| GAGAAGAATGGTAAAATTAG+TGG | - | chr6_4:85275521-85275540 | Msa1001490:intron | 30.0% | |
| TTCTATTTGTACAAATACGC+CGG | - | chr6_4:85275562-85275581 | Msa1001490:intron | 30.0% | |
| GTTAGGTGTCAAAAACATAA+AGG | - | chr6_4:85275596-85275615 | Msa1001490:intron | 30.0% | |
| ! | CAGCATCATGGTTAATATTT+TGG | + | chr6_4:85275676-85275695 | None:intergenic | 30.0% |
| !!! | TGTGGAATTATTTTGGAAGA+TGG | - | chr6_4:85275758-85275777 | Msa1001490:intron | 30.0% |
| TGTACAAAACAACCAGTTAA+AGG | - | chr6_4:85275788-85275807 | Msa1001490:intron | 30.0% | |
| ! | CATCTTTTTCTTCCTTTAAC+TGG | + | chr6_4:85275803-85275822 | None:intergenic | 30.0% |
| !! | ATGATTCTAGCTTCTTTCAT+TGG | - | chr6_4:85273563-85273582 | Msa1001490:CDS | 30.0% |
| CATGCATGTATGTATGTATT+CGG | + | chr6_4:85274110-85274129 | None:intergenic | 30.0% | |
| ! | TAGGAAAAGCTGATAATGTA+AGG | - | chr6_4:85274427-85274446 | Msa1001490:intron | 30.0% |
| ATTTGAATCTTCTCACCAAA+AGG | - | chr6_4:85274506-85274525 | Msa1001490:intron | 30.0% | |
| TTTGAATCTTCTCACCAAAA+GGG | - | chr6_4:85274507-85274526 | Msa1001490:intron | 30.0% | |
| TTTCATGAGATCTTTCTTCA+AGG | - | chr6_4:85274540-85274559 | Msa1001490:intron | 30.0% | |
| AATGCATAGAATGTACTTAC+AGG | + | chr6_4:85274591-85274610 | None:intergenic | 30.0% | |
| TAAGAGCTAAGTTATAGGTT+TGG | - | chr6_4:85274818-85274837 | Msa1001490:intron | 30.0% | |
| CACATTTGCATCTTACATAA+AGG | - | chr6_4:85275010-85275029 | Msa1001490:CDS | 30.0% | |
| TGAGTACATTTGATTATGCT+TGG | - | chr6_4:85275226-85275245 | Msa1001490:intron | 30.0% | |
| GCTTGGAACACAATTAATAA+CGG | - | chr6_4:85275243-85275262 | Msa1001490:intron | 30.0% | |
| AGCATTTCAAGAATATCACT+GGG | + | chr6_4:85275279-85275298 | None:intergenic | 30.0% | |
| !! | TCGGATTTGTTATCTTTCAT+AGG | + | chr6_4:85275405-85275424 | None:intergenic | 30.0% |
| GTTGTATCTTGAACTATCTT+AGG | + | chr6_4:85275488-85275507 | None:intergenic | 30.0% | |
| ! | GATTTTTCCATTGAGAAGAA+TGG | - | chr6_4:85275509-85275528 | Msa1001490:intron | 30.0% |
| GAGAAGAATGGTAAAATTAG+TGG | - | chr6_4:85275521-85275540 | Msa1001490:intron | 30.0% | |
| TTCTATTTGTACAAATACGC+CGG | - | chr6_4:85275562-85275581 | Msa1001490:intron | 30.0% | |
| GTTAGGTGTCAAAAACATAA+AGG | - | chr6_4:85275596-85275615 | Msa1001490:intron | 30.0% | |
| ! | CAGCATCATGGTTAATATTT+TGG | + | chr6_4:85275676-85275695 | None:intergenic | 30.0% |
| !!! | TGTGGAATTATTTTGGAAGA+TGG | - | chr6_4:85275758-85275777 | Msa1001490:intron | 30.0% |
| TGTACAAAACAACCAGTTAA+AGG | - | chr6_4:85275788-85275807 | Msa1001490:intron | 30.0% | |
| ! | CATCTTTTTCTTCCTTTAAC+TGG | + | chr6_4:85275803-85275822 | None:intergenic | 30.0% |
| !! | TTCTAGCTTCTTTCATTGGA+AGG | - | chr6_4:85273567-85273586 | Msa1001490:CDS | 35.0% |
| TTCTTATTGGTCCTTCTGAT+TGG | - | chr6_4:85274235-85274254 | Msa1001490:intron | 35.0% | |
| TCTTATTGGTCCTTCTGATT+GGG | - | chr6_4:85274236-85274255 | Msa1001490:intron | 35.0% | |
| GAATAATCTTCCCAATCAGA+AGG | + | chr6_4:85274249-85274268 | None:intergenic | 35.0% | |
| GATTGGGAAGATTATTCCAA+AGG | - | chr6_4:85274252-85274271 | Msa1001490:intron | 35.0% | |
| GGAAGATTATTCCAAAGGAA+AGG | - | chr6_4:85274257-85274276 | Msa1001490:intron | 35.0% | |
| GATTATTCCAAAGGAAAGGA+AGG | - | chr6_4:85274261-85274280 | Msa1001490:intron | 35.0% | |
| CTCCAATGTTATGGTAGAAA+TGG | - | chr6_4:85274456-85274475 | Msa1001490:intron | 35.0% | |
| CTCCATTTCTACCATAACAT+TGG | + | chr6_4:85274461-85274480 | None:intergenic | 35.0% | |
| GGATCCCATCTATAAACAAT+TGG | + | chr6_4:85274570-85274589 | None:intergenic | 35.0% | |
| ! | GCAATGGTAATCTAGCATTT+TGG | + | chr6_4:85274677-85274696 | None:intergenic | 35.0% |
| ATACAATATGGTCAAGGCAA+TGG | + | chr6_4:85274693-85274712 | None:intergenic | 35.0% | |
| AGTTATAGGTTTGGAAGTCT+AGG | - | chr6_4:85274827-85274846 | Msa1001490:intron | 35.0% | |
| ACACAATTAATAACGGTCCA+CGG | - | chr6_4:85275250-85275269 | Msa1001490:intron | 35.0% | |
| GAGCATTTCAAGAATATCAC+TGG | + | chr6_4:85275280-85275299 | None:intergenic | 35.0% | |
| ATGCTCAACAAAATCTCTTC+CGG | - | chr6_4:85275294-85275313 | Msa1001490:intron | 35.0% | |
| ATCTGAAAATGTTCTTGTGC+CGG | + | chr6_4:85275316-85275335 | None:intergenic | 35.0% | |
| !! | CCTACTTTCTTTTGAGTGAA+GGG | + | chr6_4:85275357-85275376 | None:intergenic | 35.0% |
| CCTTCACTCAAAAGAAAGTA+GGG | - | chr6_4:85275355-85275374 | Msa1001490:intron | 35.0% | |
| GGCAACATGCTTGATTTAAT+TGG | + | chr6_4:85275384-85275403 | None:intergenic | 35.0% | |
| !! | AACTGGTTGTTTTGTACAAG+TGG | + | chr6_4:85275786-85275805 | None:intergenic | 35.0% |
| !! | TTCTAGCTTCTTTCATTGGA+AGG | - | chr6_4:85273567-85273586 | Msa1001490:CDS | 35.0% |
| TTCTTATTGGTCCTTCTGAT+TGG | - | chr6_4:85274235-85274254 | Msa1001490:intron | 35.0% | |
| TCTTATTGGTCCTTCTGATT+GGG | - | chr6_4:85274236-85274255 | Msa1001490:intron | 35.0% | |
| GAATAATCTTCCCAATCAGA+AGG | + | chr6_4:85274249-85274268 | None:intergenic | 35.0% | |
| GATTGGGAAGATTATTCCAA+AGG | - | chr6_4:85274252-85274271 | Msa1001490:intron | 35.0% | |
| GGAAGATTATTCCAAAGGAA+AGG | - | chr6_4:85274257-85274276 | Msa1001490:intron | 35.0% | |
| GATTATTCCAAAGGAAAGGA+AGG | - | chr6_4:85274261-85274280 | Msa1001490:intron | 35.0% | |
| CTCCAATGTTATGGTAGAAA+TGG | - | chr6_4:85274456-85274475 | Msa1001490:intron | 35.0% | |
| CTCCATTTCTACCATAACAT+TGG | + | chr6_4:85274461-85274480 | None:intergenic | 35.0% | |
| GGATCCCATCTATAAACAAT+TGG | + | chr6_4:85274570-85274589 | None:intergenic | 35.0% | |
| ! | GCAATGGTAATCTAGCATTT+TGG | + | chr6_4:85274677-85274696 | None:intergenic | 35.0% |
| ATACAATATGGTCAAGGCAA+TGG | + | chr6_4:85274693-85274712 | None:intergenic | 35.0% | |
| AGTTATAGGTTTGGAAGTCT+AGG | - | chr6_4:85274827-85274846 | Msa1001490:intron | 35.0% | |
| ACACAATTAATAACGGTCCA+CGG | - | chr6_4:85275250-85275269 | Msa1001490:intron | 35.0% | |
| GAGCATTTCAAGAATATCAC+TGG | + | chr6_4:85275280-85275299 | None:intergenic | 35.0% | |
| ATGCTCAACAAAATCTCTTC+CGG | - | chr6_4:85275294-85275313 | Msa1001490:intron | 35.0% | |
| ATCTGAAAATGTTCTTGTGC+CGG | + | chr6_4:85275316-85275335 | None:intergenic | 35.0% | |
| !! | CCTACTTTCTTTTGAGTGAA+GGG | + | chr6_4:85275357-85275376 | None:intergenic | 35.0% |
| CCTTCACTCAAAAGAAAGTA+GGG | - | chr6_4:85275355-85275374 | Msa1001490:intron | 35.0% | |
| GGCAACATGCTTGATTTAAT+TGG | + | chr6_4:85275384-85275403 | None:intergenic | 35.0% | |
| !! | AACTGGTTGTTTTGTACAAG+TGG | + | chr6_4:85275786-85275805 | None:intergenic | 35.0% |
| TATAGAACCCATAACCTACC+AGG | - | chr6_4:85274294-85274313 | Msa1001490:intron | 40.0% | |
| CGAATTTCCTGGTAGGTTAT+GGG | + | chr6_4:85274304-85274323 | None:intergenic | 40.0% | |
| CCATAACCTACCAGGAAATT+CGG | - | chr6_4:85274302-85274321 | Msa1001490:intron | 40.0% | |
| CATAACCTACCAGGAAATTC+GGG | - | chr6_4:85274303-85274322 | Msa1001490:intron | 40.0% | |
| !! | ATCTGTGTTGACTAGCAGTT+TGG | - | chr6_4:85274350-85274369 | Msa1001490:intron | 40.0% |
| !! | TCTGTGTTGACTAGCAGTTT+GGG | - | chr6_4:85274351-85274370 | Msa1001490:intron | 40.0% |
| CGAGTAGTTGTGGTTTATCT+AGG | - | chr6_4:85274408-85274427 | Msa1001490:intron | 40.0% | |
| AGGACAAGACTCCAATGTTA+TGG | - | chr6_4:85274447-85274466 | Msa1001490:intron | 40.0% | |
| TGGTAGAAATGGAGCTCATT+TGG | - | chr6_4:85274467-85274486 | Msa1001490:intron | 40.0% | |
| GGTAGAAATGGAGCTCATTT+GGG | - | chr6_4:85274468-85274487 | Msa1001490:intron | 40.0% | |
| AATGGAGCTCATTTGGGAAA+TGG | - | chr6_4:85274474-85274493 | Msa1001490:intron | 40.0% | |
| AATCTTCTCACCAAAAGGGA+CGG | - | chr6_4:85274511-85274530 | Msa1001490:intron | 40.0% | |
| CAGTTGAGATTCTGTTTGCA+AGG | + | chr6_4:85275205-85275224 | None:intergenic | 40.0% | |
| AGTGAAGGGTAGAAGTGATT+TGG | + | chr6_4:85275343-85275362 | None:intergenic | 40.0% | |
| CCCTTCACTCAAAAGAAAGT+AGG | - | chr6_4:85275354-85275373 | Msa1001490:intron | 40.0% | |
| !! | CCCTACTTTCTTTTGAGTGA+AGG | + | chr6_4:85275358-85275377 | None:intergenic | 40.0% |
| AAATCCGATGAAGCAGACAA+TGG | - | chr6_4:85275417-85275436 | Msa1001490:intron | 40.0% | |
| TGAATTTGAACACGCGAGAT+AGG | + | chr6_4:85275455-85275474 | None:intergenic | 40.0% | |
| ! | AGTGGAGTGATTTTGGATGA+TGG | - | chr6_4:85275539-85275558 | Msa1001490:intron | 40.0% |
| !!! | CACCTAACTCTTTTTTCGAC+CGG | + | chr6_4:85275584-85275603 | None:intergenic | 40.0% |
| TCCAAGTCAGAATCACAAAG+AGG | - | chr6_4:85275635-85275654 | Msa1001490:intron | 40.0% | |
| TCCTCTTTGTGATTCTGACT+TGG | + | chr6_4:85275639-85275658 | None:intergenic | 40.0% | |
| ATCAACAAGACTCTCAACCA+CGG | + | chr6_4:85275714-85275733 | None:intergenic | 40.0% | |
| TATAGAACCCATAACCTACC+AGG | - | chr6_4:85274294-85274313 | Msa1001490:intron | 40.0% | |
| CGAATTTCCTGGTAGGTTAT+GGG | + | chr6_4:85274304-85274323 | None:intergenic | 40.0% | |
| CCATAACCTACCAGGAAATT+CGG | - | chr6_4:85274302-85274321 | Msa1001490:intron | 40.0% | |
| CATAACCTACCAGGAAATTC+GGG | - | chr6_4:85274303-85274322 | Msa1001490:intron | 40.0% | |
| !! | ATCTGTGTTGACTAGCAGTT+TGG | - | chr6_4:85274350-85274369 | Msa1001490:intron | 40.0% |
| !! | TCTGTGTTGACTAGCAGTTT+GGG | - | chr6_4:85274351-85274370 | Msa1001490:intron | 40.0% |
| CGAGTAGTTGTGGTTTATCT+AGG | - | chr6_4:85274408-85274427 | Msa1001490:intron | 40.0% | |
| AGGACAAGACTCCAATGTTA+TGG | - | chr6_4:85274447-85274466 | Msa1001490:intron | 40.0% | |
| TGGTAGAAATGGAGCTCATT+TGG | - | chr6_4:85274467-85274486 | Msa1001490:intron | 40.0% | |
| GGTAGAAATGGAGCTCATTT+GGG | - | chr6_4:85274468-85274487 | Msa1001490:intron | 40.0% | |
| AATGGAGCTCATTTGGGAAA+TGG | - | chr6_4:85274474-85274493 | Msa1001490:intron | 40.0% | |
| AATCTTCTCACCAAAAGGGA+CGG | - | chr6_4:85274511-85274530 | Msa1001490:intron | 40.0% | |
| CAGTTGAGATTCTGTTTGCA+AGG | + | chr6_4:85275205-85275224 | None:intergenic | 40.0% | |
| AGTGAAGGGTAGAAGTGATT+TGG | + | chr6_4:85275343-85275362 | None:intergenic | 40.0% | |
| CCCTTCACTCAAAAGAAAGT+AGG | - | chr6_4:85275354-85275373 | Msa1001490:intron | 40.0% | |
| !! | CCCTACTTTCTTTTGAGTGA+AGG | + | chr6_4:85275358-85275377 | None:intergenic | 40.0% |
| AAATCCGATGAAGCAGACAA+TGG | - | chr6_4:85275417-85275436 | Msa1001490:intron | 40.0% | |
| TGAATTTGAACACGCGAGAT+AGG | + | chr6_4:85275455-85275474 | None:intergenic | 40.0% | |
| ! | AGTGGAGTGATTTTGGATGA+TGG | - | chr6_4:85275539-85275558 | Msa1001490:intron | 40.0% |
| !!! | CACCTAACTCTTTTTTCGAC+CGG | + | chr6_4:85275584-85275603 | None:intergenic | 40.0% |
| TCCAAGTCAGAATCACAAAG+AGG | - | chr6_4:85275635-85275654 | Msa1001490:intron | 40.0% | |
| TCCTCTTTGTGATTCTGACT+TGG | + | chr6_4:85275639-85275658 | None:intergenic | 40.0% | |
| ATCAACAAGACTCTCAACCA+CGG | + | chr6_4:85275714-85275733 | None:intergenic | 40.0% | |
| TCACACGGTCAAGACATCAT+TGG | - | chr6_4:85273964-85273983 | Msa1001490:intron | 45.0% | |
| TTGATTGCGTGTGATTGCGT+GGG | - | chr6_4:85274065-85274084 | Msa1001490:CDS | 45.0% | |
| TGTACAGCCTTCCTTTCCTT+TGG | + | chr6_4:85274271-85274290 | None:intergenic | 45.0% | |
| CCGAATTTCCTGGTAGGTTA+TGG | + | chr6_4:85274305-85274324 | None:intergenic | 45.0% | |
| !! | CTGTGTTGACTAGCAGTTTG+GGG | - | chr6_4:85274352-85274371 | Msa1001490:intron | 45.0% |
| ! | GAAACAATGACCGTCCCTTT+TGG | + | chr6_4:85274524-85274543 | None:intergenic | 45.0% |
| GTGGAAGATCTTCAGCATCA+TGG | + | chr6_4:85275688-85275707 | None:intergenic | 45.0% | |
| TGAAGATCTTCCACAAACCG+TGG | - | chr6_4:85275694-85275713 | Msa1001490:intron | 45.0% | |
| TCACACGGTCAAGACATCAT+TGG | - | chr6_4:85273964-85273983 | Msa1001490:intron | 45.0% | |
| TTGATTGCGTGTGATTGCGT+GGG | - | chr6_4:85274065-85274084 | Msa1001490:CDS | 45.0% | |
| TGTACAGCCTTCCTTTCCTT+TGG | + | chr6_4:85274271-85274290 | None:intergenic | 45.0% | |
| CCGAATTTCCTGGTAGGTTA+TGG | + | chr6_4:85274305-85274324 | None:intergenic | 45.0% | |
| !! | CTGTGTTGACTAGCAGTTTG+GGG | - | chr6_4:85274352-85274371 | Msa1001490:intron | 45.0% |
| ! | GAAACAATGACCGTCCCTTT+TGG | + | chr6_4:85274524-85274543 | None:intergenic | 45.0% |
| GTGGAAGATCTTCAGCATCA+TGG | + | chr6_4:85275688-85275707 | None:intergenic | 45.0% | |
| TGAAGATCTTCCACAAACCG+TGG | - | chr6_4:85275694-85275713 | Msa1001490:intron | 45.0% | |
| GTTGATTGCGTGTGATTGCG+TGG | - | chr6_4:85274064-85274083 | Msa1001490:CDS | 50.0% | |
| ACTCCGAGTTCATAGACTCC+CGG | + | chr6_4:85274330-85274349 | None:intergenic | 50.0% | |
| CACAACTACTCGACACGAGT+CGG | + | chr6_4:85274400-85274419 | None:intergenic | 50.0% | |
| ! | TGTTTGCAAGGCATCTCCCT+TGG | + | chr6_4:85275193-85275212 | None:intergenic | 50.0% |
| AGAATATCACTGGGAAGCCG+TGG | + | chr6_4:85275270-85275289 | None:intergenic | 50.0% | |
| TCCGATGAAGCAGACAATGG+CGG | - | chr6_4:85275420-85275439 | Msa1001490:intron | 50.0% | |
| CGCCGGTCGAAAAAAGAGTT+AGG | - | chr6_4:85275579-85275598 | Msa1001490:intron | 50.0% | |
| AGACTCTCAACCACGGTTTG+TGG | + | chr6_4:85275707-85275726 | None:intergenic | 50.0% | |
| GTTGATTGCGTGTGATTGCG+TGG | - | chr6_4:85274064-85274083 | Msa1001490:CDS | 50.0% | |
| ACTCCGAGTTCATAGACTCC+CGG | + | chr6_4:85274330-85274349 | None:intergenic | 50.0% | |
| CACAACTACTCGACACGAGT+CGG | + | chr6_4:85274400-85274419 | None:intergenic | 50.0% | |
| ! | TGTTTGCAAGGCATCTCCCT+TGG | + | chr6_4:85275193-85275212 | None:intergenic | 50.0% |
| AGAATATCACTGGGAAGCCG+TGG | + | chr6_4:85275270-85275289 | None:intergenic | 50.0% | |
| TCCGATGAAGCAGACAATGG+CGG | - | chr6_4:85275420-85275439 | Msa1001490:intron | 50.0% | |
| CGCCGGTCGAAAAAAGAGTT+AGG | - | chr6_4:85275579-85275598 | Msa1001490:intron | 50.0% | |
| AGACTCTCAACCACGGTTTG+TGG | + | chr6_4:85275707-85275726 | None:intergenic | 50.0% | |
| CCTACCAGGAAATTCGGGTC+CGG | - | chr6_4:85274308-85274327 | Msa1001490:intron | 55.0% | |
| CTACCAGGAAATTCGGGTCC+GGG | - | chr6_4:85274309-85274328 | Msa1001490:intron | 55.0% | |
| GGTCCGGGAGTCTATGAACT+CGG | - | chr6_4:85274324-85274343 | Msa1001490:intron | 55.0% | |
| ! | TTGACTAGCAGTTTGGGGCG+CGG | - | chr6_4:85274357-85274376 | Msa1001490:intron | 55.0% |
| AACTACTCGACACGAGTCGG+TGG | + | chr6_4:85274397-85274416 | None:intergenic | 55.0% | |
| CGACTCGTGTCGAGTAGTTG+TGG | - | chr6_4:85274398-85274417 | Msa1001490:intron | 55.0% | |
| GCCGCCATTGTCTGCTTCAT+CGG | + | chr6_4:85275424-85275443 | None:intergenic | 55.0% | |
| CCTACCAGGAAATTCGGGTC+CGG | - | chr6_4:85274308-85274327 | Msa1001490:intron | 55.0% | |
| CTACCAGGAAATTCGGGTCC+GGG | - | chr6_4:85274309-85274328 | Msa1001490:intron | 55.0% | |
| GGTCCGGGAGTCTATGAACT+CGG | - | chr6_4:85274324-85274343 | Msa1001490:intron | 55.0% | |
| ! | TTGACTAGCAGTTTGGGGCG+CGG | - | chr6_4:85274357-85274376 | Msa1001490:intron | 55.0% |
| AACTACTCGACACGAGTCGG+TGG | + | chr6_4:85274397-85274416 | None:intergenic | 55.0% | |
| CGACTCGTGTCGAGTAGTTG+TGG | - | chr6_4:85274398-85274417 | Msa1001490:intron | 55.0% | |
| GCCGCCATTGTCTGCTTCAT+CGG | + | chr6_4:85275424-85275443 | None:intergenic | 55.0% | |
| CCGGACCCGAATTTCCTGGT+AGG | + | chr6_4:85274311-85274330 | None:intergenic | 60.0% | |
| ACTCCCGGACCCGAATTTCC+TGG | + | chr6_4:85274315-85274334 | None:intergenic | 60.0% | |
| CCGGACCCGAATTTCCTGGT+AGG | + | chr6_4:85274311-85274330 | None:intergenic | 60.0% | |
| ACTCCCGGACCCGAATTTCC+TGG | + | chr6_4:85274315-85274334 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 85273563 | 85275871 | 85273563 | ID=Msa1001490;Name=Msa1001490 |
| chr6_4 | mRNA | 85273563 | 85275871 | 85273563 | ID=Msa1001490-mRNA-1;Parent=Msa1001490;Name=Msa1001490-mRNA-1;_AED=0.06;_eAED=0.18;_QI=0|0|0|0.8|0.5|0|5|0|331 |
| chr6_4 | exon | 85275846 | 85275871 | 85275846 | ID=Msa1001490-mRNA-1:exon:16742;Parent=Msa1001490-mRNA-1 |
| chr6_4 | exon | 85275087 | 85275200 | 85275087 | ID=Msa1001490-mRNA-1:exon:16741;Parent=Msa1001490-mRNA-1 |
| chr6_4 | exon | 85274840 | 85275066 | 85274840 | ID=Msa1001490-mRNA-1:exon:16740;Parent=Msa1001490-mRNA-1 |
| chr6_4 | exon | 85273973 | 85274220 | 85273973 | ID=Msa1001490-mRNA-1:exon:16739;Parent=Msa1001490-mRNA-1 |
| chr6_4 | exon | 85273563 | 85273943 | 85273563 | ID=Msa1001490-mRNA-1:exon:16738;Parent=Msa1001490-mRNA-1 |
| chr6_4 | CDS | 85275846 | 85275871 | 85275846 | ID=Msa1001490-mRNA-1:cds;Parent=Msa1001490-mRNA-1 |
| chr6_4 | CDS | 85275087 | 85275200 | 85275087 | ID=Msa1001490-mRNA-1:cds;Parent=Msa1001490-mRNA-1 |
| chr6_4 | CDS | 85274840 | 85275066 | 85274840 | ID=Msa1001490-mRNA-1:cds;Parent=Msa1001490-mRNA-1 |
| chr6_4 | CDS | 85273973 | 85274220 | 85273973 | ID=Msa1001490-mRNA-1:cds;Parent=Msa1001490-mRNA-1 |
| chr6_4 | CDS | 85273563 | 85273943 | 85273563 | ID=Msa1001490-mRNA-1:cds;Parent=Msa1001490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
