Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002380 | XP_024639353.1 | 58.779 | 131 | 52 | 1 | 98 | 226 | 1 | 131 | 3.01e-45 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002380 | A0A2Z6MM48 | 32.536 | 209 | 137 | 3 | 14 | 221 | 5 | 210 | 1.21e-30 | 122 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1002380 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002380 | MtrunA17_Chr5g0393501 | 30.500 | 200 | 132 | 3 | 26 | 221 | 43 | 239 | 7.34e-25 | 98.2 |
| Msa1002380 | MtrunA17_Chr4g0044671 | 30.531 | 226 | 146 | 8 | 1 | 222 | 1 | 219 | 1.57e-22 | 91.7 |
| Msa1002380 | MtrunA17_Chr4g0034781 | 30.093 | 216 | 140 | 8 | 11 | 222 | 5 | 213 | 3.62e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATTCATCAGTGAATT+TGG | 0.083082 | 6_4:-87985617 | None:intergenic |
| ACAATGTGTCTTTAGGAATT+TGG | 0.142567 | 6_4:+87985583 | Msa1002380:intron |
| AGTCTTGAAGAGGCCGATTT+TGG | 0.191468 | 6_4:+87985352 | Msa1002380:CDS |
| CTGATTTCAATGATTTCTTA+TGG | 0.239474 | 6_4:+87986074 | Msa1002380:CDS |
| CCAACCCTTTGTTAGCTTGC+TGG | 0.262425 | 6_4:-87986185 | None:intergenic |
| TCAAATTCATCAGTGAATTT+GGG | 0.265368 | 6_4:-87985616 | None:intergenic |
| GCACATCTCCAGCCTGATAT+TGG | 0.349705 | 6_4:-87986228 | None:intergenic |
| CACATTGACCCCTTTGCAAA+TGG | 0.355395 | 6_4:+87985915 | Msa1002380:CDS |
| CTGCGTTTCAAGTTCTTTGA+TGG | 0.370866 | 6_4:+87986250 | Msa1002380:CDS |
| CTGCACGACCAGCCAATATC+AGG | 0.371998 | 6_4:+87986216 | Msa1002380:CDS |
| CTGATTCTGTTTAGCTATGT+TGG | 0.402336 | 6_4:+87985778 | Msa1002380:CDS |
| GATTATTTGACCATTGTCAT+TGG | 0.404983 | 6_4:-87986125 | None:intergenic |
| GTTACAAAGCCTCCCAAAAT+CGG | 0.425248 | 6_4:-87985365 | None:intergenic |
| CATAAGAAATCATTGAAATC+AGG | 0.427387 | 6_4:-87986073 | None:intergenic |
| ACTCTGCCACGGTTGACTAA+TGG | 0.446976 | 6_4:+87985712 | Msa1002380:CDS |
| TTGATGACGTGGGTCCAGTC+TGG | 0.455683 | 6_4:+87985635 | Msa1002380:CDS |
| GAAGTCTTGTGCTTCTGCTA+TGG | 0.476473 | 6_4:-87985864 | None:intergenic |
| TCAGCTTCATGCCTTCAAAC+TGG | 0.481449 | 6_4:-87985759 | None:intergenic |
| CAGCAAGCTAACAAAGGGTT+GGG | 0.481791 | 6_4:+87986186 | Msa1002380:CDS |
| AGTAGATTTGTTATCACACT+TGG | 0.481808 | 6_4:+87985805 | Msa1002380:CDS |
| AATTCGCATCCATTTGCAAA+GGG | 0.485601 | 6_4:-87985924 | None:intergenic |
| CACACTTGGGAATACAATTG+AGG | 0.504352 | 6_4:+87985819 | Msa1002380:CDS |
| ATCTCCAGCCTGATATTGGC+TGG | 0.512753 | 6_4:-87986224 | None:intergenic |
| CTGTTGCTTAACACCATGGC+TGG | 0.520138 | 6_4:+87985320 | None:intergenic |
| TGCGTTTCAAGTTCTTTGAT+GGG | 0.523138 | 6_4:+87986251 | Msa1002380:CDS |
| AACTGTTCATTTACCACACA+AGG | 0.524327 | 6_4:+87985385 | Msa1002380:CDS |
| TTCAATGATTTCTTATGGAA+TGG | 0.526065 | 6_4:+87986079 | Msa1002380:CDS |
| CAAATTCATCAGTGAATTTG+GGG | 0.528317 | 6_4:-87985615 | None:intergenic |
| AATGGATGCGAATTCTGAAC+TGG | 0.528366 | 6_4:+87985933 | Msa1002380:CDS |
| TGCCACGGTTGACTAATGGC+TGG | 0.536796 | 6_4:+87985716 | Msa1002380:CDS |
| CACTGATGAATTTGATGACG+TGG | 0.540972 | 6_4:+87985624 | Msa1002380:CDS |
| CCAGCAAGCTAACAAAGGGT+TGG | 0.541248 | 6_4:+87986185 | Msa1002380:CDS |
| ACTGCTATTCATTACCAAGT+TGG | 0.542667 | 6_4:+87986151 | Msa1002380:CDS |
| CTCACCAGCAAGCTAACAAA+GGG | 0.557320 | 6_4:+87986181 | Msa1002380:CDS |
| TGAAATTATCAAACCTTGTG+TGG | 0.563494 | 6_4:-87985398 | None:intergenic |
| TGGAATTTAATTGACGCTGA+AGG | 0.570875 | 6_4:+87985655 | Msa1002380:CDS |
| GAATTCGCATCCATTTGCAA+AGG | 0.571229 | 6_4:-87985925 | None:intergenic |
| AAGAAATCATTGAAATCAGG+TGG | 0.573987 | 6_4:-87986070 | None:intergenic |
| GCGTCAATTAAATTCCAGAC+TGG | 0.579334 | 6_4:-87985649 | None:intergenic |
| AATCATTGAAATCAGGTGGA+AGG | 0.583795 | 6_4:-87986066 | None:intergenic |
| GTAGATTTGTTATCACACTT+GGG | 0.584740 | 6_4:+87985806 | Msa1002380:CDS |
| TTGTTCCTCTCCAATGACAA+TGG | 0.585814 | 6_4:+87986115 | Msa1002380:CDS |
| ACTCACCAGCAAGCTAACAA+AGG | 0.591903 | 6_4:+87986180 | Msa1002380:CDS |
| TTTGACCATTGTCATTGGAG+AGG | 0.597349 | 6_4:-87986120 | None:intergenic |
| CAAGCTAACAAAGGGTTGGG+AGG | 0.608960 | 6_4:+87986189 | Msa1002380:CDS |
| ACAATTCAGCTACTCTGCCA+CGG | 0.617034 | 6_4:+87985701 | Msa1002380:CDS |
| CGCTGAAGGAAATTCTCATG+AGG | 0.625269 | 6_4:+87985669 | Msa1002380:CDS |
| GACTGTGCGATATCCAGCCA+TGG | 0.627340 | 6_4:-87985333 | None:intergenic |
| GTGCTTCTGCTATGGTACGT+AGG | 0.636405 | 6_4:-87985856 | None:intergenic |
| GATATCGCACAGTCTTGAAG+AGG | 0.637699 | 6_4:+87985342 | Msa1002380:CDS |
| ACGACCAGCCAATATCAGGC+TGG | 0.644275 | 6_4:+87986220 | Msa1002380:CDS |
| ATTCGCATCCATTTGCAAAG+GGG | 0.653436 | 6_4:-87985923 | None:intergenic |
| TGGTGAGTGAGTCACCAACT+TGG | 0.680717 | 6_4:-87986165 | None:intergenic |
| GTCCAGCCATTAGTCAACCG+TGG | 0.698189 | 6_4:-87985718 | None:intergenic |
| ACTGATGAATTTGATGACGT+GGG | 0.707740 | 6_4:+87985625 | Msa1002380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAATTTTCTTTGTAATTA+AGG | - | chr6_4:87985550-87985569 | None:intergenic | 15.0% |
| !!! | GTAAATTTTCTTTGTAATTA+AGG | - | chr6_4:87985550-87985569 | None:intergenic | 15.0% |
| !!! | AAGGTTTGATAATTTCATTT+CGG | + | chr6_4:87985404-87985423 | Msa1002380:intron | 20.0% |
| !! | AATTTCTTAATGTTCAAACA+AGG | + | chr6_4:87985518-87985537 | Msa1002380:intron | 20.0% |
| !! | TGTTTATTAAAATCTGCAAA+TGG | + | chr6_4:87985983-87986002 | Msa1002380:intron | 20.0% |
| !! | CAACAATGAAAATTAAGATT+AGG | - | chr6_4:87986033-87986052 | None:intergenic | 20.0% |
| !!! | AAGGTTTGATAATTTCATTT+CGG | + | chr6_4:87985404-87985423 | Msa1002380:intron | 20.0% |
| !! | AATTTCTTAATGTTCAAACA+AGG | + | chr6_4:87985518-87985537 | Msa1002380:intron | 20.0% |
| !! | TGTTTATTAAAATCTGCAAA+TGG | + | chr6_4:87985983-87986002 | Msa1002380:intron | 20.0% |
| !! | CAACAATGAAAATTAAGATT+AGG | - | chr6_4:87986033-87986052 | None:intergenic | 20.0% |
| ! | AGATATATACTTTGCAACAA+AGG | - | chr6_4:87985463-87985482 | None:intergenic | 25.0% |
| ! | TCAAATTCATCAGTGAATTT+GGG | - | chr6_4:87985619-87985638 | None:intergenic | 25.0% |
| ! | ATCAAATTCATCAGTGAATT+TGG | - | chr6_4:87985620-87985639 | None:intergenic | 25.0% |
| !!! | TGCAGATTTTAATAAACACA+TGG | - | chr6_4:87985981-87986000 | None:intergenic | 25.0% |
| ! | CATAAGAAATCATTGAAATC+AGG | - | chr6_4:87986076-87986095 | None:intergenic | 25.0% |
| ! | CTGATTTCAATGATTTCTTA+TGG | + | chr6_4:87986074-87986093 | Msa1002380:CDS | 25.0% |
| ! | TTCAATGATTTCTTATGGAA+TGG | + | chr6_4:87986079-87986098 | Msa1002380:CDS | 25.0% |
| ! | AGATATATACTTTGCAACAA+AGG | - | chr6_4:87985463-87985482 | None:intergenic | 25.0% |
| ! | TCAAATTCATCAGTGAATTT+GGG | - | chr6_4:87985619-87985638 | None:intergenic | 25.0% |
| ! | ATCAAATTCATCAGTGAATT+TGG | - | chr6_4:87985620-87985639 | None:intergenic | 25.0% |
| !!! | TGCAGATTTTAATAAACACA+TGG | - | chr6_4:87985981-87986000 | None:intergenic | 25.0% |
| ! | CATAAGAAATCATTGAAATC+AGG | - | chr6_4:87986076-87986095 | None:intergenic | 25.0% |
| ! | CTGATTTCAATGATTTCTTA+TGG | + | chr6_4:87986074-87986093 | Msa1002380:CDS | 25.0% |
| ! | TTCAATGATTTCTTATGGAA+TGG | + | chr6_4:87986079-87986098 | Msa1002380:CDS | 25.0% |
| TGAAATTATCAAACCTTGTG+TGG | - | chr6_4:87985401-87985420 | None:intergenic | 30.0% | |
| ! | ACAATGTGTCTTTAGGAATT+TGG | + | chr6_4:87985583-87985602 | Msa1002380:intron | 30.0% |
| CAAATTCATCAGTGAATTTG+GGG | - | chr6_4:87985618-87985637 | None:intergenic | 30.0% | |
| ! | AGACAATTTTACCAGTTTGA+AGG | + | chr6_4:87985748-87985767 | Msa1002380:CDS | 30.0% |
| !! | AGTAGATTTGTTATCACACT+TGG | + | chr6_4:87985805-87985824 | Msa1002380:CDS | 30.0% |
| !! | GTAGATTTGTTATCACACTT+GGG | + | chr6_4:87985806-87985825 | Msa1002380:CDS | 30.0% |
| TTTCATTGTTGTCTAAATGC+AGG | + | chr6_4:87986042-87986061 | Msa1002380:intron | 30.0% | |
| AAGAAATCATTGAAATCAGG+TGG | - | chr6_4:87986073-87986092 | None:intergenic | 30.0% | |
| GATTATTTGACCATTGTCAT+TGG | - | chr6_4:87986128-87986147 | None:intergenic | 30.0% | |
| TGAAATTATCAAACCTTGTG+TGG | - | chr6_4:87985401-87985420 | None:intergenic | 30.0% | |
| ! | ACAATGTGTCTTTAGGAATT+TGG | + | chr6_4:87985583-87985602 | Msa1002380:intron | 30.0% |
| CAAATTCATCAGTGAATTTG+GGG | - | chr6_4:87985618-87985637 | None:intergenic | 30.0% | |
| ! | AGACAATTTTACCAGTTTGA+AGG | + | chr6_4:87985748-87985767 | Msa1002380:CDS | 30.0% |
| !! | AGTAGATTTGTTATCACACT+TGG | + | chr6_4:87985805-87985824 | Msa1002380:CDS | 30.0% |
| !! | GTAGATTTGTTATCACACTT+GGG | + | chr6_4:87985806-87985825 | Msa1002380:CDS | 30.0% |
| TTTCATTGTTGTCTAAATGC+AGG | + | chr6_4:87986042-87986061 | Msa1002380:intron | 30.0% | |
| AAGAAATCATTGAAATCAGG+TGG | - | chr6_4:87986073-87986092 | None:intergenic | 30.0% | |
| GATTATTTGACCATTGTCAT+TGG | - | chr6_4:87986128-87986147 | None:intergenic | 30.0% | |
| AACTGTTCATTTACCACACA+AGG | + | chr6_4:87985385-87985404 | Msa1002380:CDS | 35.0% | |
| CAACTCAACAATGTGTCTTT+AGG | + | chr6_4:87985576-87985595 | Msa1002380:intron | 35.0% | |
| !! | ACTGATGAATTTGATGACGT+GGG | + | chr6_4:87985625-87985644 | Msa1002380:CDS | 35.0% |
| TGGAATTTAATTGACGCTGA+AGG | + | chr6_4:87985655-87985674 | Msa1002380:CDS | 35.0% | |
| CTGATTCTGTTTAGCTATGT+TGG | + | chr6_4:87985778-87985797 | Msa1002380:CDS | 35.0% | |
| AATTCGCATCCATTTGCAAA+GGG | - | chr6_4:87985927-87985946 | None:intergenic | 35.0% | |
| AATCATTGAAATCAGGTGGA+AGG | - | chr6_4:87986069-87986088 | None:intergenic | 35.0% | |
| ACTGCTATTCATTACCAAGT+TGG | + | chr6_4:87986151-87986170 | Msa1002380:CDS | 35.0% | |
| !! | TGCGTTTCAAGTTCTTTGAT+GGG | + | chr6_4:87986251-87986270 | Msa1002380:CDS | 35.0% |
| AACTGTTCATTTACCACACA+AGG | + | chr6_4:87985385-87985404 | Msa1002380:CDS | 35.0% | |
| CAACTCAACAATGTGTCTTT+AGG | + | chr6_4:87985576-87985595 | Msa1002380:intron | 35.0% | |
| !! | ACTGATGAATTTGATGACGT+GGG | + | chr6_4:87985625-87985644 | Msa1002380:CDS | 35.0% |
| TGGAATTTAATTGACGCTGA+AGG | + | chr6_4:87985655-87985674 | Msa1002380:CDS | 35.0% | |
| CTGATTCTGTTTAGCTATGT+TGG | + | chr6_4:87985778-87985797 | Msa1002380:CDS | 35.0% | |
| AATTCGCATCCATTTGCAAA+GGG | - | chr6_4:87985927-87985946 | None:intergenic | 35.0% | |
| AATCATTGAAATCAGGTGGA+AGG | - | chr6_4:87986069-87986088 | None:intergenic | 35.0% | |
| ACTGCTATTCATTACCAAGT+TGG | + | chr6_4:87986151-87986170 | Msa1002380:CDS | 35.0% | |
| !! | TGCGTTTCAAGTTCTTTGAT+GGG | + | chr6_4:87986251-87986270 | Msa1002380:CDS | 35.0% |
| GTTACAAAGCCTCCCAAAAT+CGG | - | chr6_4:87985368-87985387 | None:intergenic | 40.0% | |
| !! | CACTGATGAATTTGATGACG+TGG | + | chr6_4:87985624-87985643 | Msa1002380:CDS | 40.0% |
| GCGTCAATTAAATTCCAGAC+TGG | - | chr6_4:87985652-87985671 | None:intergenic | 40.0% | |
| CACACTTGGGAATACAATTG+AGG | + | chr6_4:87985819-87985838 | Msa1002380:CDS | 40.0% | |
| ATTCGCATCCATTTGCAAAG+GGG | - | chr6_4:87985926-87985945 | None:intergenic | 40.0% | |
| GAATTCGCATCCATTTGCAA+AGG | - | chr6_4:87985928-87985947 | None:intergenic | 40.0% | |
| AATGGATGCGAATTCTGAAC+TGG | + | chr6_4:87985933-87985952 | Msa1002380:CDS | 40.0% | |
| TTGTTCCTCTCCAATGACAA+TGG | + | chr6_4:87986115-87986134 | Msa1002380:CDS | 40.0% | |
| TTTGACCATTGTCATTGGAG+AGG | - | chr6_4:87986123-87986142 | None:intergenic | 40.0% | |
| !! | CTGCGTTTCAAGTTCTTTGA+TGG | + | chr6_4:87986250-87986269 | Msa1002380:CDS | 40.0% |
| GTTACAAAGCCTCCCAAAAT+CGG | - | chr6_4:87985368-87985387 | None:intergenic | 40.0% | |
| !! | CACTGATGAATTTGATGACG+TGG | + | chr6_4:87985624-87985643 | Msa1002380:CDS | 40.0% |
| GCGTCAATTAAATTCCAGAC+TGG | - | chr6_4:87985652-87985671 | None:intergenic | 40.0% | |
| CACACTTGGGAATACAATTG+AGG | + | chr6_4:87985819-87985838 | Msa1002380:CDS | 40.0% | |
| ATTCGCATCCATTTGCAAAG+GGG | - | chr6_4:87985926-87985945 | None:intergenic | 40.0% | |
| GAATTCGCATCCATTTGCAA+AGG | - | chr6_4:87985928-87985947 | None:intergenic | 40.0% | |
| AATGGATGCGAATTCTGAAC+TGG | + | chr6_4:87985933-87985952 | Msa1002380:CDS | 40.0% | |
| TTGTTCCTCTCCAATGACAA+TGG | + | chr6_4:87986115-87986134 | Msa1002380:CDS | 40.0% | |
| TTTGACCATTGTCATTGGAG+AGG | - | chr6_4:87986123-87986142 | None:intergenic | 40.0% | |
| !! | CTGCGTTTCAAGTTCTTTGA+TGG | + | chr6_4:87986250-87986269 | Msa1002380:CDS | 40.0% |
| GATATCGCACAGTCTTGAAG+AGG | + | chr6_4:87985342-87985361 | Msa1002380:CDS | 45.0% | |
| !! | AGTCTTGAAGAGGCCGATTT+TGG | + | chr6_4:87985352-87985371 | Msa1002380:CDS | 45.0% |
| !! | GTCTTGAAGAGGCCGATTTT+GGG | + | chr6_4:87985353-87985372 | Msa1002380:CDS | 45.0% |
| CGCTGAAGGAAATTCTCATG+AGG | + | chr6_4:87985669-87985688 | Msa1002380:CDS | 45.0% | |
| ACAATTCAGCTACTCTGCCA+CGG | + | chr6_4:87985701-87985720 | Msa1002380:CDS | 45.0% | |
| TCAGCTTCATGCCTTCAAAC+TGG | - | chr6_4:87985762-87985781 | None:intergenic | 45.0% | |
| ! | GAAGTCTTGTGCTTCTGCTA+TGG | - | chr6_4:87985867-87985886 | None:intergenic | 45.0% |
| CACATTGACCCCTTTGCAAA+TGG | + | chr6_4:87985915-87985934 | Msa1002380:CDS | 45.0% | |
| ACTCACCAGCAAGCTAACAA+AGG | + | chr6_4:87986180-87986199 | Msa1002380:CDS | 45.0% | |
| CTCACCAGCAAGCTAACAAA+GGG | + | chr6_4:87986181-87986200 | Msa1002380:CDS | 45.0% | |
| CAGCAAGCTAACAAAGGGTT+GGG | + | chr6_4:87986186-87986205 | Msa1002380:CDS | 45.0% | |
| GATATCGCACAGTCTTGAAG+AGG | + | chr6_4:87985342-87985361 | Msa1002380:CDS | 45.0% | |
| !! | AGTCTTGAAGAGGCCGATTT+TGG | + | chr6_4:87985352-87985371 | Msa1002380:CDS | 45.0% |
| !! | GTCTTGAAGAGGCCGATTTT+GGG | + | chr6_4:87985353-87985372 | Msa1002380:CDS | 45.0% |
| CGCTGAAGGAAATTCTCATG+AGG | + | chr6_4:87985669-87985688 | Msa1002380:CDS | 45.0% | |
| ACAATTCAGCTACTCTGCCA+CGG | + | chr6_4:87985701-87985720 | Msa1002380:CDS | 45.0% | |
| TCAGCTTCATGCCTTCAAAC+TGG | - | chr6_4:87985762-87985781 | None:intergenic | 45.0% | |
| ! | GAAGTCTTGTGCTTCTGCTA+TGG | - | chr6_4:87985867-87985886 | None:intergenic | 45.0% |
| CACATTGACCCCTTTGCAAA+TGG | + | chr6_4:87985915-87985934 | Msa1002380:CDS | 45.0% | |
| ACTCACCAGCAAGCTAACAA+AGG | + | chr6_4:87986180-87986199 | Msa1002380:CDS | 45.0% | |
| CTCACCAGCAAGCTAACAAA+GGG | + | chr6_4:87986181-87986200 | Msa1002380:CDS | 45.0% | |
| CAGCAAGCTAACAAAGGGTT+GGG | + | chr6_4:87986186-87986205 | Msa1002380:CDS | 45.0% | |
| !! | TTGAAGAGGCCGATTTTGGG+AGG | + | chr6_4:87985356-87985375 | Msa1002380:CDS | 50.0% |
| ACTCTGCCACGGTTGACTAA+TGG | + | chr6_4:87985712-87985731 | Msa1002380:CDS | 50.0% | |
| GTGCTTCTGCTATGGTACGT+AGG | - | chr6_4:87985859-87985878 | None:intergenic | 50.0% | |
| TGGTGAGTGAGTCACCAACT+TGG | - | chr6_4:87986168-87986187 | None:intergenic | 50.0% | |
| !! | CCAACCCTTTGTTAGCTTGC+TGG | - | chr6_4:87986188-87986207 | None:intergenic | 50.0% |
| CCAGCAAGCTAACAAAGGGT+TGG | + | chr6_4:87986185-87986204 | Msa1002380:CDS | 50.0% | |
| CAAGCTAACAAAGGGTTGGG+AGG | + | chr6_4:87986189-87986208 | Msa1002380:CDS | 50.0% | |
| ATCTCCAGCCTGATATTGGC+TGG | - | chr6_4:87986227-87986246 | None:intergenic | 50.0% | |
| GCACATCTCCAGCCTGATAT+TGG | - | chr6_4:87986231-87986250 | None:intergenic | 50.0% | |
| !! | TTGAAGAGGCCGATTTTGGG+AGG | + | chr6_4:87985356-87985375 | Msa1002380:CDS | 50.0% |
| ACTCTGCCACGGTTGACTAA+TGG | + | chr6_4:87985712-87985731 | Msa1002380:CDS | 50.0% | |
| GTGCTTCTGCTATGGTACGT+AGG | - | chr6_4:87985859-87985878 | None:intergenic | 50.0% | |
| TGGTGAGTGAGTCACCAACT+TGG | - | chr6_4:87986168-87986187 | None:intergenic | 50.0% | |
| !! | CCAACCCTTTGTTAGCTTGC+TGG | - | chr6_4:87986188-87986207 | None:intergenic | 50.0% |
| CCAGCAAGCTAACAAAGGGT+TGG | + | chr6_4:87986185-87986204 | Msa1002380:CDS | 50.0% | |
| CAAGCTAACAAAGGGTTGGG+AGG | + | chr6_4:87986189-87986208 | Msa1002380:CDS | 50.0% | |
| ATCTCCAGCCTGATATTGGC+TGG | - | chr6_4:87986227-87986246 | None:intergenic | 50.0% | |
| GCACATCTCCAGCCTGATAT+TGG | - | chr6_4:87986231-87986250 | None:intergenic | 50.0% | |
| !! | TTGATGACGTGGGTCCAGTC+TGG | + | chr6_4:87985635-87985654 | Msa1002380:CDS | 55.0% |
| TGCCACGGTTGACTAATGGC+TGG | + | chr6_4:87985716-87985735 | Msa1002380:CDS | 55.0% | |
| GTCCAGCCATTAGTCAACCG+TGG | - | chr6_4:87985721-87985740 | None:intergenic | 55.0% | |
| CTGCACGACCAGCCAATATC+AGG | + | chr6_4:87986216-87986235 | Msa1002380:CDS | 55.0% | |
| ACGACCAGCCAATATCAGGC+TGG | + | chr6_4:87986220-87986239 | Msa1002380:CDS | 55.0% | |
| !! | TTGATGACGTGGGTCCAGTC+TGG | + | chr6_4:87985635-87985654 | Msa1002380:CDS | 55.0% |
| TGCCACGGTTGACTAATGGC+TGG | + | chr6_4:87985716-87985735 | Msa1002380:CDS | 55.0% | |
| GTCCAGCCATTAGTCAACCG+TGG | - | chr6_4:87985721-87985740 | None:intergenic | 55.0% | |
| CTGCACGACCAGCCAATATC+AGG | + | chr6_4:87986216-87986235 | Msa1002380:CDS | 55.0% | |
| ACGACCAGCCAATATCAGGC+TGG | + | chr6_4:87986220-87986239 | Msa1002380:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 87985335 | 87986315 | 87985335 | ID=Msa1002380;Name=Msa1002380 |
| chr6_4 | mRNA | 87985335 | 87986315 | 87985335 | ID=Msa1002380-mRNA-1;Parent=Msa1002380;Name=Msa1002380-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0|0.66|1|1|3|0|226 |
| chr6_4 | exon | 87985335 | 87985406 | 87985335 | ID=Msa1002380-mRNA-1:exon:17121;Parent=Msa1002380-mRNA-1 |
| chr6_4 | exon | 87985598 | 87985954 | 87985598 | ID=Msa1002380-mRNA-1:exon:17122;Parent=Msa1002380-mRNA-1 |
| chr6_4 | exon | 87986064 | 87986315 | 87986064 | ID=Msa1002380-mRNA-1:exon:17123;Parent=Msa1002380-mRNA-1 |
| chr6_4 | CDS | 87985335 | 87985406 | 87985335 | ID=Msa1002380-mRNA-1:cds;Parent=Msa1002380-mRNA-1 |
| chr6_4 | CDS | 87985598 | 87985954 | 87985598 | ID=Msa1002380-mRNA-1:cds;Parent=Msa1002380-mRNA-1 |
| chr6_4 | CDS | 87986064 | 87986315 | 87986064 | ID=Msa1002380-mRNA-1:cds;Parent=Msa1002380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
