AlfalfaGEDB | Msa1003810

M. sativa cultivar zhongmu-4 / Msa1003810

KEGG: -
GO: GO:0000003 GO:0000217 GO:0000400 GO:0000902 GO:0000904 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042995 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003810	XP_003621009.1	98.856	437	5	0	1	437	1	437	0.0	902

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003810	sp\|Q9MAT6\|HMG15_ARATH	54.813	374	140	6	1	356	1	363	2.40e-118	355

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003810	G7KWP7	98.856	437	5	0	1	437	1	437	0.0	902

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TFs/TRs:

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Gene ID	Type	Classification
Msa1003810	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003810	MtrunA17_Chr7g0214501	86.932	352	4	1	86	437	1	310	0.0	615
Msa1003810	MtrunA17_Chr1g0213311	61.440	389	131	8	1	377	1	382	1.51e-165	472
Msa1003810	MtrunA17_Chr7g0214491	97.647	85	2	0	1	85	1	85	5.20e-57	183
Msa1003810	MtrunA17_Chr3g0079841	39.073	302	121	6	22	323	26	264	2.65e-56	187
Msa1003810	MtrunA17_Chr3g0143581	51.852	135	61	3	25	156	20	153	2.17e-40	142
Msa1003810	MtrunA17_Chr3g0143571	45.098	153	78	2	190	337	23	174	5.62e-37	133
Msa1003810	MtrunA17_Chr5g0435401	24.055	291	158	7	67	353	70	301	6.96e-14	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003810	AT1G04880.1	54.813	374	140	6	1	356	1	363	2.44e-119	355
Msa1003810	AT1G76110.1	42.812	313	156	3	25	327	27	326	8.40e-82	256
Msa1003810	AT3G13350.1	47.157	299	126	8	30	323	34	305	7.24e-79	247
Msa1003810	AT1G55650.1	39.867	301	140	6	32	331	30	290	3.79e-64	210

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Find 92 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTACTAAACCAAACCA+TGG	0.615278	7_1:+892323	Msa1003810:CDS
AAAGTAAGGATAACATGTTT+TGG	0.411072	7_1:-893397	None:intergenic
AAATTCTCTACACTAAAGTA+AGG	0.535953	7_1:-893411	None:intergenic
AAATTGTAACCACTTCTGTT+AGG	0.413038	7_1:-892273	None:intergenic
AAATTTGTTTGAAAGGTAGG+AGG	0.593616	7_1:+889476	Msa1003810:intron
AACATGGATGCTTCTTCCGG+TGG	0.585693	7_1:+893242	Msa1003810:CDS
AAGGATATTAGTAGAATGAT+TGG	0.451525	7_1:+892348	Msa1003810:CDS
AAGGTACCAAGCAGAAATGG+AGG	0.630994	7_1:+893046	Msa1003810:CDS
AAGTCGACTGGATGTGTTCC+TGG	0.356132	7_1:-891249	None:intergenic
AATATTGCATCTGCTGCATT+GGG	0.466960	7_1:+892183	Msa1003810:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCAATTCTCAGTTACTATT+TGG	+	chr7_1:889111-889130	Msa1003810:five_prime_UTR	30.0%
ATACAAGAACGGAACAAATT+TGG	-	chr7_1:889238-889257	None:intergenic	30.0%
AATGTAAGCATAAAGAGCTT+GGG	-	chr7_1:889625-889644	None:intergenic	30.0%
ACACTAACATATTGTTGTCA+TGG	+	chr7_1:889819-889838	Msa1003810:intron	30.0%
ACATATTGTTGTCATGGATT+TGG	+	chr7_1:889825-889844	Msa1003810:intron	30.0%
AATGTCCAAGTTAAAGCTTT+CGG	-	chr7_1:890141-890160	None:intergenic	30.0%
ACTAAATACACTCAACAGAT+TGG	+	chr7_1:890204-890223	Msa1003810:intron	30.0%
TCACGACTCAATTCAATTTA+TGG	-	chr7_1:890422-890441	None:intergenic	30.0%
TCGTGAACAAAACTTTGTAT+GGG	+	chr7_1:890436-890455	Msa1003810:intron	30.0%
TTATATCAGTCAACGAAGAT+TGG	+	chr7_1:890597-890616	Msa1003810:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	889024	893421	889024	ID=Msa1003810;Name=Msa1003810
chr7_1	mRNA	889024	893421	889024	ID=Msa1003810-mRNA-1;Parent=Msa1003810;Name=Msa1003810-mRNA-1;_AED=0.09;_eAED=0.09;_QI=126\|0.83\|0.57\|1\|0.83\|0.71\|7\|0\|437
chr7_1	exon	889024	889132	889024	ID=Msa1003810-mRNA-1:exon:394;Parent=Msa1003810-mRNA-1
chr7_1	exon	889491	889680	889491	ID=Msa1003810-mRNA-1:exon:395;Parent=Msa1003810-mRNA-1
chr7_1	exon	889883	889961	889883	ID=Msa1003810-mRNA-1:exon:396;Parent=Msa1003810-mRNA-1
chr7_1	exon	890929	891091	890929	ID=Msa1003810-mRNA-1:exon:397;Parent=Msa1003810-mRNA-1
chr7_1	exon	891184	891309	891184	ID=Msa1003810-mRNA-1:exon:398;Parent=Msa1003810-mRNA-1
chr7_1	exon	892043	892407	892043	ID=Msa1003810-mRNA-1:exon:399;Parent=Msa1003810-mRNA-1
chr7_1	exon	893014	893421	893014	ID=Msa1003810-mRNA-1:exon:400;Parent=Msa1003810-mRNA-1
chr7_1	five_prime_UTR	889024	889132	889024	ID=Msa1003810-mRNA-1:five_prime_utr;Parent=Msa1003810-mRNA-1
chr7_1	five_prime_UTR	889491	889507	889491	ID=Msa1003810-mRNA-1:five_prime_utr;Parent=Msa1003810-mRNA-1
chr7_1	CDS	889508	889680	889508	ID=Msa1003810-mRNA-1:cds;Parent=Msa1003810-mRNA-1
chr7_1	CDS	889883	889961	889883	ID=Msa1003810-mRNA-1:cds;Parent=Msa1003810-mRNA-1
chr7_1	CDS	890929	891091	890929	ID=Msa1003810-mRNA-1:cds;Parent=Msa1003810-mRNA-1
chr7_1	CDS	891184	891309	891184	ID=Msa1003810-mRNA-1:cds;Parent=Msa1003810-mRNA-1
chr7_1	CDS	892043	892407	892043	ID=Msa1003810-mRNA-1:cds;Parent=Msa1003810-mRNA-1
chr7_1	CDS	893014	893421	893014	ID=Msa1003810-mRNA-1:cds;Parent=Msa1003810-mRNA-1

Gene Sequence

>Msa1003810

ATGGCATCAACATCATGTTTTTTCAACAACAATGATTTCCCTATGAAAGTGGTAGCTCCTATGTCTCATTCATATCCTGAACCTCTTGCAAAATATGATGATGTTGTGGCAAATCCCAAGCTCTTTATGCTTACATTGGAGAAGCTTCATGCTTCTATGGGTACTAAGTTCATGGTTCCCATTATTGGAGGAAAAGAACTAGATTTGTGTCGACTCTTCATTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAAGAAGTAACTGCAGCTTTCAGTTTTCCATCAACAGCAACCAATGCTTCCTTTGTGCTCAGAAAATACTATTCTTCATTGCTTTATCACTATGAGCAAATCTACTATTTTAGATCCAAACGGTGGACCCCTGCATCTTCTGATGCTTTGCAGAATCAATCAACCATGTCTGTTCCAGCTTCAATAACGCAATTTTTGCAGCCTTCTCCAGGAACACATCCAGTCGACTTTCAGAAGTCAGGGGTTAATGCTTCTGAATTGCCTCAAGTGTCTTCTTCTGGATCTTCACTTGTTGGAGTTATTGATGGAAAGTTTGAAAGTGGATATCTAGTTTCAGTTTCAGTAGGTTCAGAGACACTCAAAGGTGTACTATATGAGTCTCCACAAAGCATTAAAATTAATAATAACAATATTGCATCTGCTGCATTGGGCGTCCAACGCCGCCGTCGGAGGAGGAAGAAGTCAGAAATAAAAAGGAGAGATCCTGCACATCCAAAACCTAACAGAAGTGGTTACAATTTCTTCTTTGCTGAACAACATGCAAGACTAAAGCTACTAAACCAAACCATGGACAAGGATATTAGTAGAATGATTGGTGAACTTTGGAACAACTTAAAAGAGTCTGAGAAAACAGTTTATCAAGAAAAGGCTATTAAGGATAAAGAAAGGTACCAAGCAGAAATGGAGGATTATCGCGATAAAATGAAGACGAGCATTGTAACCGACTACGCGGGGCCACTGCAACAACGGTTTCTGGAAGGAGATTCAGCTTTGGTGGACATTGACATAAAAATGCACGATTCTTGTCAGACTCCTGAGGAGAGTAGTTCTGGTGAAAGTGACTATGTTGCAGATGATATCAACATGGATGCTTCTTCCGGTGGAGCAAGAGTGGATTCTGAAGCTTTTGTTGATTCAGACAAGGCAACTAAGGAGGGAGTTATTGAAGTTCTTAGCCATTGTGAGGGAGAAGTGAATGCTGGCGGAATTCAACAGACTCAAAAGATGAATGAGAGCCAAAACATGTTATCCTTACTTTAG

Protein sequence

>Msa1003810

MASTSCFFNNNDFPMKVVAPMSHSYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMVPIIGGKELDLCRLFIEVTSRGGIEKLMKERRWKEVTAAFSFPSTATNASFVLRKYYSSLLYHYEQIYYFRSKRWTPASSDALQNQSTMSVPASITQFLQPSPGTHPVDFQKSGVNASELPQVSSSGSSLVGVIDGKFESGYLVSVSVGSETLKGVLYESPQSIKINNNNIASAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDYAGPLQQRFLEGDSALVDIDIKMHDSCQTPEESSSGESDYVADDINMDASSGGARVDSEAFVDSDKATKEGVIEVLSHCEGEVNAGGIQQTQKMNESQNMLSLL*