AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1003810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003810 MtrunA17_Chr7g0214501 86.932 352 4 1 86 437 1 310 0.0 615
Msa1003810 MtrunA17_Chr1g0213311 61.440 389 131 8 1 377 1 382 1.51e-165 472
Msa1003810 MtrunA17_Chr7g0214491 97.647 85 2 0 1 85 1 85 5.20e-57 183
Msa1003810 MtrunA17_Chr3g0079841 39.073 302 121 6 22 323 26 264 2.65e-56 187
Msa1003810 MtrunA17_Chr3g0143581 51.852 135 61 3 25 156 20 153 2.17e-40 142
Msa1003810 MtrunA17_Chr3g0143571 45.098 153 78 2 190 337 23 174 5.62e-37 133
Msa1003810 MtrunA17_Chr5g0435401 24.055 291 158 7 67 353 70 301 6.96e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003810 AT1G04880.1 54.813 374 140 6 1 356 1 363 2.44e-119 355
Msa1003810 AT1G76110.1 42.812 313 156 3 25 327 27 326 8.40e-82 256
Msa1003810 AT3G13350.1 47.157 299 126 8 30 323 34 305 7.24e-79 247
Msa1003810 AT1G55650.1 39.867 301 140 6 32 331 30 290 3.79e-64 210

Find 92 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAATTCTCAGTTACTATT+TGG 0.154165 7_1:+889111 Msa1003810:five_prime_UTR
TGTTCTGCAGTGTCTTCTTC+TGG 0.231989 7_1:+892033 Msa1003810:intron
GGAGAAGCTTCATGCTTCTA+TGG 0.249345 7_1:+889645 Msa1003810:CDS
GCCACTGCAACAACGGTTTC+TGG 0.256389 7_1:+893115 Msa1003810:CDS
GGAAGAAGTCAGAAATAAAA+AGG 0.265856 7_1:+892229 Msa1003810:CDS
TTATCAAGAAAAGGCTATTA+AGG 0.267196 7_1:+893016 Msa1003810:CDS
TAACCACTTCTGTTAGGTTT+TGG 0.270511 7_1:-892267 None:intergenic
TGTTTCAGGGTTCCCATTAT+TGG 0.277531 7_1:+889875 Msa1003810:intron
CGGTGGACCCCTGCATCTTC+TGG 0.281007 7_1:+891070 Msa1003810:CDS
TCTTCTGGATCTTCACTTGT+TGG 0.289352 7_1:+892048 Msa1003810:CDS
ATAGGAGCTACCACTTTCAT+AGG 0.334690 7_1:-889547 None:intergenic
TCACTTGTTGGAGTTATTGA+TGG 0.342127 7_1:+892060 Msa1003810:CDS
TAATATCCTTGTCCATGGTT+TGG 0.351606 7_1:-892335 None:intergenic
AAGTCGACTGGATGTGTTCC+TGG 0.356132 7_1:-891249 None:intergenic
TCCTCCTCCGACGGCGGCGT+TGG 0.371177 7_1:-892209 None:intergenic
ACTCCTGAGGAGAGTAGTTC+TGG 0.384663 7_1:+893191 Msa1003810:CDS
ATCAACATGGATGCTTCTTC+CGG 0.386689 7_1:+893239 Msa1003810:CDS
CAATATTGCATCTGCTGCAT+TGG 0.389249 7_1:+892182 Msa1003810:CDS
GTAGAATGATTGGTGAACTT+TGG 0.397195 7_1:+892358 Msa1003810:CDS
AGATGCAGGGGTCCACCGTT+TGG 0.409841 7_1:-891065 None:intergenic
AAAGTAAGGATAACATGTTT+TGG 0.411072 7_1:-893397 None:intergenic
AAATTGTAACCACTTCTGTT+AGG 0.413038 7_1:-892273 None:intergenic
GAAGCATTGGTTGCTGTTGA+TGG 0.418040 7_1:-890977 None:intergenic
AGAAAGGTACCAAGCAGAAA+TGG 0.423266 7_1:+893043 Msa1003810:CDS
GGAAGGAGATTCAGCTTTGG+TGG 0.436527 7_1:+893136 Msa1003810:CDS
CAAGCTCTTTATGCTTACAT+TGG 0.448632 7_1:+889624 Msa1003810:CDS
AAGGATATTAGTAGAATGAT+TGG 0.451525 7_1:+892348 Msa1003810:CDS
CCAGTCGACTTTCAGAAGTC+AGG 0.453438 7_1:+891261 Msa1003810:CDS
TCTGGAAGGAGATTCAGCTT+TGG 0.456761 7_1:+893133 Msa1003810:CDS
CATTAAGGTTTATCAAGAAA+AGG 0.456846 7_1:+893007 Msa1003810:intron
CAATGTAAGCATAAAGAGCT+TGG 0.458599 7_1:-889623 None:intergenic
ATTGATGGAAAGTTTGAAAG+TGG 0.459678 7_1:+892075 Msa1003810:CDS
ACGCGGGGCCACTGCAACAA+CGG 0.461362 7_1:+893108 Msa1003810:CDS
AGAATCCACTCTTGCTCCAC+CGG 0.466317 7_1:-893258 None:intergenic
AATATTGCATCTGCTGCATT+GGG 0.466960 7_1:+892183 Msa1003810:CDS
TGATTCAGACAAGGCAACTA+AGG 0.470199 7_1:+893292 Msa1003810:CDS
TCCAACGCCGCCGTCGGAGG+AGG 0.470219 7_1:+892208 Msa1003810:CDS
AGCTTATGAAAGAGAGAAGA+TGG 0.479121 7_1:+890927 Msa1003810:intron
TATCTAGTTTCAGTTTCAGT+AGG 0.493509 7_1:+892099 Msa1003810:CDS
TTGCAGTGGCCCCGCGTAGT+CGG 0.498245 7_1:-893102 None:intergenic
AATGTAAGCATAAAGAGCTT+GGG 0.499008 7_1:-889622 None:intergenic
TCTGAGCACAAAGGAAGCAT+TGG 0.506402 7_1:-890990 None:intergenic
TCCAGAAACCGTTGTTGCAG+TGG 0.511982 7_1:-893116 None:intergenic
ACTGGATGTGTTCCTGGAGA+AGG 0.512094 7_1:-891243 None:intergenic
TTCAGGGTTCCCATTATTGG+AGG 0.517053 7_1:+889878 Msa1003810:intron
GAGAAGCTTCATGCTTCTAT+GGG 0.518689 7_1:+889646 Msa1003810:CDS
TGGGCGTCCAACGCCGCCGT+CGG 0.523765 7_1:+892202 Msa1003810:CDS
TTCATTGAAGTGACTTCTCG+TGG 0.526953 7_1:+889926 Msa1003810:CDS
ATGCACAAACCAGAAGATGC+AGG 0.528390 7_1:-891079 None:intergenic
CAATGATTTCCCTATGAAAG+TGG 0.531885 7_1:+889537 Msa1003810:CDS
AAATTCTCTACACTAAAGTA+AGG 0.535953 7_1:-893411 None:intergenic
GATAATCCTCCATTTCTGCT+TGG 0.539679 7_1:-893052 None:intergenic
TCTACTAATATCCTTGTCCA+TGG 0.543804 7_1:-892340 None:intergenic
CAGTCGACTTTCAGAAGTCA+GGG 0.544869 7_1:+891262 Msa1003810:CDS
TCACCAGAACTACTCTCCTC+AGG 0.547824 7_1:-893194 None:intergenic
CCTGACTTCTGAAAGTCGAC+TGG 0.548629 7_1:-891261 None:intergenic
TGCACAAACCAGAAGATGCA+GGG 0.551653 7_1:-891078 None:intergenic
GCGTCCAACGCCGCCGTCGG+AGG 0.562184 7_1:+892205 Msa1003810:CDS
TTGAAGTGACTTCTCGTGGA+GGG 0.562395 7_1:+889930 Msa1003810:CDS
GAAGTTCTTAGCCATTGTGA+GGG 0.564422 7_1:+893326 Msa1003810:CDS
TCAGGATATGAATGAGACAT+AGG 0.570116 7_1:-889565 None:intergenic
AGGCTATTAAGGATAAAGAA+AGG 0.573816 7_1:+893027 Msa1003810:CDS
TTCTTCCGGTGGAGCAAGAG+TGG 0.579438 7_1:+893253 Msa1003810:CDS
TGAAGTTCTTAGCCATTGTG+AGG 0.580768 7_1:+893325 Msa1003810:CDS
CTGACTTCTTCCTCCTCCGA+CGG 0.584477 7_1:-892218 None:intergenic
TATTGAAGCTGGAACAGACA+TGG 0.585157 7_1:-891205 None:intergenic
AACATGGATGCTTCTTCCGG+TGG 0.585693 7_1:+893242 Msa1003810:CDS
AAATTTGTTTGAAAGGTAGG+AGG 0.593616 7_1:+889476 Msa1003810:intron
TCAGACAAGGCAACTAAGGA+GGG 0.601091 7_1:+893296 Msa1003810:CDS
CATCCAAAACCTAACAGAAG+TGG 0.603836 7_1:+892264 Msa1003810:CDS
TGCAAAATATGATGATGTTG+TGG 0.605066 7_1:+889594 Msa1003810:CDS
ACTTCTTCCTCCTCCGACGG+CGG 0.605098 7_1:-892215 None:intergenic
TTCAGACAAGGCAACTAAGG+AGG 0.611052 7_1:+893295 Msa1003810:CDS
AGCATTGTAACCGACTACGC+GGG 0.614088 7_1:+893092 Msa1003810:CDS
AAAGCTACTAAACCAAACCA+TGG 0.615278 7_1:+892323 Msa1003810:CDS
AATGCTTCTGAATTGCCTCA+AGG 0.618648 7_1:+891288 Msa1003810:CDS
CTGCAACAACGGTTTCTGGA+AGG 0.622323 7_1:+893119 Msa1003810:CDS
TAGGAGCTACCACTTTCATA+GGG 0.623246 7_1:-889546 None:intergenic
AAGGTACCAAGCAGAAATGG+AGG 0.630994 7_1:+893046 Msa1003810:CDS
TGTGAGGGAGAAGTGAATGC+TGG 0.631243 7_1:+893341 Msa1003810:CDS
CGATTCTTGTCAGACTCCTG+AGG 0.642082 7_1:+893178 Msa1003810:CDS
CATTCACTTCTCCCTCACAA+TGG 0.653715 7_1:-893337 None:intergenic
TTCTCGTGGAGGGATTGAGA+AGG 0.661472 7_1:+889940 Msa1003810:CDS
GCACAAACCAGAAGATGCAG+GGG 0.670000 7_1:-891077 None:intergenic
ACTAAACCAAACCATGGACA+AGG 0.670033 7_1:+892329 Msa1003810:CDS
GTAGGTTCAGAGACACTCAA+AGG 0.670192 7_1:+892117 Msa1003810:CDS
GCATTGTAACCGACTACGCG+GGG 0.675516 7_1:+893093 Msa1003810:CDS
ATTGAAGTGACTTCTCGTGG+AGG 0.683803 7_1:+889929 Msa1003810:CDS
GAGCATTGTAACCGACTACG+CGG 0.688230 7_1:+893091 Msa1003810:CDS
AGTCGACTTTCAGAAGTCAG+GGG 0.692181 7_1:+891263 Msa1003810:CDS
TGTTGCAGATGATATCAACA+TGG 0.720650 7_1:+893226 Msa1003810:CDS
GAGGGAGAAGTGAATGCTGG+CGG 0.753755 7_1:+893344 Msa1003810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTATTCATATTCATTT+AGG + chr7_1:889159-889178 Msa1003810:intron 10.0%
!! AAATATTAAAAACATCAAAT+AGG - chr7_1:890382-890401 None:intergenic 10.0%
!!! AGTATTACATATATAATTTT+TGG + chr7_1:890863-890882 Msa1003810:intron 10.0%
!! ATAAAAAACATATACAAGAA+CGG - chr7_1:889249-889268 None:intergenic 15.0%
!! TATCATCAATAATTAATCAT+TGG + chr7_1:889266-889285 Msa1003810:intron 15.0%
!! TTCACAAAAATTATTTAGAA+AGG - chr7_1:889990-890009 None:intergenic 15.0%
!!! AAAATGAACATGTTTTTATT+AGG - chr7_1:890334-890353 None:intergenic 15.0%
!!! GATGTTTTTAATATTTAATC+AGG + chr7_1:890386-890405 Msa1003810:intron 15.0%
!!! ATTTTTTCTTCTTTTCTTTT+TGG - chr7_1:891348-891367 None:intergenic 15.0%
!! GAAAAGAAGAAAAAATAATT+TGG + chr7_1:891352-891371 Msa1003810:intron 15.0%
!!! TTGTAATTTTGATAAATTCA+TGG - chr7_1:891631-891650 None:intergenic 15.0%
!!! TTTGTAATTTTCAATACATT+TGG + chr7_1:891791-891810 Msa1003810:intron 15.0%
!!! AATAGCTTTATTTATTTTAC+AGG - chr7_1:891955-891974 None:intergenic 15.0%
!!! TTATTAATTTTAATGCTTTG+TGG - chr7_1:892159-892178 None:intergenic 15.0%
!! CAATTTCCTTAAATTATTAT+TGG + chr7_1:892881-892900 Msa1003810:intron 15.0%
!! TACATACCAATAATAATTTA+AGG - chr7_1:892890-892909 None:intergenic 15.0%
!!! CATATACCTATATTGTTTTT+TGG + chr7_1:889440-889459 Msa1003810:intron 20.0%
!! TAGAAACCAAAAAACAATAT+AGG - chr7_1:889449-889468 None:intergenic 20.0%
!!! AAACATCAAATTTGTTTGAA+AGG + chr7_1:889469-889488 Msa1003810:intron 20.0%
!!! TATAACTGAAATTTTGTTTC+AGG + chr7_1:889861-889880 Msa1003810:intron 20.0%
!!! ATAACTGAAATTTTGTTTCA+GGG + chr7_1:889862-889881 Msa1003810:intron 20.0%
!! AATAAATATGTTCATGAATG+AGG + chr7_1:890107-890126 Msa1003810:intron 20.0%
!!! AACATGTTCATTTTATTTCA+AGG + chr7_1:890340-890359 Msa1003810:intron 20.0%
!!! TATTTTACAAAATTCGATGT+TGG + chr7_1:890565-890584 Msa1003810:intron 20.0%
!! ATAATATTAAGTACCTTTGT+CGG + chr7_1:890703-890722 Msa1003810:intron 20.0%
!! TCATCTATGAAAAAAAGTTT+AGG - chr7_1:890794-890813 None:intergenic 20.0%
!!! TTTTAATGTTCAATATGACT+AGG - chr7_1:891488-891507 None:intergenic 20.0%
!! TGACTAACAAAATATACATT+TGG - chr7_1:891663-891682 None:intergenic 20.0%
!! TCAATCTGGTTAAATATATT+TGG + chr7_1:891883-891902 Msa1003810:intron 20.0%
!! AAATGAGATTGAAAAACTAA+AGG - chr7_1:891932-891951 None:intergenic 20.0%
!!! TAACAATTCAAATTGGTTTT+TGG + chr7_1:892627-892646 Msa1003810:intron 20.0%
!!! TTGGTTATTTTTTAACGATT+TGG + chr7_1:892646-892665 Msa1003810:intron 20.0%
!! CTCTCTGTATTTTCTTAATA+AGG - chr7_1:889027-889046 None:intergenic 25.0%
!! ATCAAATTTGTTTGAAAGGT+AGG + chr7_1:889473-889492 Msa1003810:intron 25.0%
! CATATTTATTTGCTCAAACT+TGG - chr7_1:890097-890116 None:intergenic 25.0%
! AATCACAAGCATTAAAATAG+TGG - chr7_1:890287-890306 None:intergenic 25.0%
! GGAAAATTTCTTATACTAGT+TGG - chr7_1:890313-890332 None:intergenic 25.0%
!!! TTCATTTTATTTCAAGGACA+TGG + chr7_1:890346-890365 Msa1003810:intron 25.0%
! GATCTATGTACAAATCTATA+GGG - chr7_1:890839-890858 None:intergenic 25.0%
! AGATCTATGTACAAATCTAT+AGG - chr7_1:890840-890859 None:intergenic 25.0%
! CACAAATTGCTATAAAGATA+AGG - chr7_1:890903-890922 None:intergenic 25.0%
!!! TCTACTATTTTAGATCCAAA+CGG + chr7_1:891050-891069 Msa1003810:CDS 25.0%
!! GTATATTTTGTTAGTCACTT+TGG + chr7_1:891666-891685 Msa1003810:intron 25.0%
! GATTGATTAAGTAACTTTGT+TGG - chr7_1:891869-891888 None:intergenic 25.0%
! ACAAAGTTACTTAATCAATC+TGG + chr7_1:891869-891888 Msa1003810:intron 25.0%
! TGATTTATATATGCATGACT+TGG - chr7_1:891981-892000 None:intergenic 25.0%
! TAGTTAACAATAACAAGTAG+TGG + chr7_1:892006-892025 Msa1003810:intron 25.0%
! AAGGATATTAGTAGAATGAT+TGG + chr7_1:892348-892367 Msa1003810:CDS 25.0%
!! TTTGATTTAACAGTTTGCTT+TGG - chr7_1:892524-892543 None:intergenic 25.0%
! TTCGGTTTAACAATTCAAAT+TGG + chr7_1:892620-892639 Msa1003810:intron 25.0%
!! ATACAAGTTCGATTTTGAAT+CGG + chr7_1:892729-892748 Msa1003810:intron 25.0%
! AGCATATTAATAACATGACT+AGG - chr7_1:892975-892994 None:intergenic 25.0%
! CATTAAGGTTTATCAAGAAA+AGG + chr7_1:893007-893026 Msa1003810:intron 25.0%
! TTATCAAGAAAAGGCTATTA+AGG + chr7_1:893016-893035 Msa1003810:CDS 25.0%
!! AAAGTAAGGATAACATGTTT+TGG - chr7_1:893400-893419 None:intergenic 25.0%
CTCAATTCTCAGTTACTATT+TGG + chr7_1:889111-889130 Msa1003810:five_prime_UTR 30.0%
ATACAAGAACGGAACAAATT+TGG - chr7_1:889238-889257 None:intergenic 30.0%
! AAATTTGTTTGAAAGGTAGG+AGG + chr7_1:889476-889495 Msa1003810:intron 30.0%
! ACATCATCATATTTTGCAAG+AGG - chr7_1:889592-889611 None:intergenic 30.0%
! TGCAAAATATGATGATGTTG+TGG + chr7_1:889594-889613 Msa1003810:CDS 30.0%
AATGTAAGCATAAAGAGCTT+GGG - chr7_1:889625-889644 None:intergenic 30.0%
ACACTAACATATTGTTGTCA+TGG + chr7_1:889819-889838 Msa1003810:intron 30.0%
ACATATTGTTGTCATGGATT+TGG + chr7_1:889825-889844 Msa1003810:intron 30.0%
! AGTTCTTTTCCTCCAATAAT+GGG - chr7_1:889890-889909 None:intergenic 30.0%
! TAGTTCTTTTCCTCCAATAA+TGG - chr7_1:889891-889910 None:intergenic 30.0%
AATGTCCAAGTTAAAGCTTT+CGG - chr7_1:890141-890160 None:intergenic 30.0%
ACTAAATACACTCAACAGAT+TGG + chr7_1:890204-890223 Msa1003810:intron 30.0%
TCACGACTCAATTCAATTTA+TGG - chr7_1:890422-890441 None:intergenic 30.0%
TCGTGAACAAAACTTTGTAT+GGG + chr7_1:890436-890455 Msa1003810:intron 30.0%
TTATATCAGTCAACGAAGAT+TGG + chr7_1:890597-890616 Msa1003810:intron 30.0%
! ATAGTATTTTCTGAGCACAA+AGG - chr7_1:891002-891021 None:intergenic 30.0%
AAAAATTGCGTTATTGAAGC+TGG - chr7_1:891219-891238 None:intergenic 30.0%
TATATGAGCTTAAGAACCTT+AGG + chr7_1:891389-891408 Msa1003810:intron 30.0%
AATATGACTAGGTGTATGTT+TGG - chr7_1:891477-891496 None:intergenic 30.0%
TAAAAGTAGACATAGAAGTG+CGG + chr7_1:891503-891522 Msa1003810:intron 30.0%
GTAACTGTCTACTTAATCTT+TGG - chr7_1:891571-891590 None:intergenic 30.0%
ACAAAATATACATTTGGCGA+TGG - chr7_1:891657-891676 None:intergenic 30.0%
AGTAGTTTCCTAAATCAAAG+CGG - chr7_1:891747-891766 None:intergenic 30.0%
ATTGATGGAAAGTTTGAAAG+TGG + chr7_1:892075-892094 Msa1003810:CDS 30.0%
! TATCTAGTTTCAGTTTCAGT+AGG + chr7_1:892099-892118 Msa1003810:CDS 30.0%
GGAAGAAGTCAGAAATAAAA+AGG + chr7_1:892229-892248 Msa1003810:CDS 30.0%
AAATTGTAACCACTTCTGTT+AGG - chr7_1:892276-892295 None:intergenic 30.0%
! TAACAGTTTGCTTTGGTATT+TGG - chr7_1:892517-892536 None:intergenic 30.0%
! TAAACCAAACTGGTTTAGTT+CGG - chr7_1:892573-892592 None:intergenic 30.0%
!!! TAACGATTTGGTTAGTTTTC+TGG + chr7_1:892658-892677 Msa1003810:intron 30.0%
TGTATAAATGTTTGACACAC+CGG - chr7_1:892714-892733 None:intergenic 30.0%
! TACAAGTTCGATTTTGAATC+GGG + chr7_1:892730-892749 Msa1003810:intron 30.0%
! GTATTGCCAAATTGTTGTTA+CGG + chr7_1:892782-892801 Msa1003810:intron 30.0%
TTAGACACTATGACTATTCA+AGG - chr7_1:892825-892844 None:intergenic 30.0%
TAACACAACACTAATACATG+TGG + chr7_1:892842-892861 Msa1003810:intron 30.0%
AGGCTATTAAGGATAAAGAA+AGG + chr7_1:893027-893046 Msa1003810:CDS 30.0%
AAGCAGCAATGTCAAAGAAA+CGG - chr7_1:889203-889222 None:intergenic 35.0%
!!! AGGTAGGAGGTTTTAATTGA+TGG + chr7_1:889489-889508 Msa1003810:intron 35.0%
CAATGATTTCCCTATGAAAG+TGG + chr7_1:889537-889556 Msa1003810:CDS 35.0%
TCAGGATATGAATGAGACAT+AGG - chr7_1:889568-889587 None:intergenic 35.0%
! TCATATTTTGCAAGAGGTTC+AGG - chr7_1:889586-889605 None:intergenic 35.0%
CAATGTAAGCATAAAGAGCT+TGG - chr7_1:889626-889645 None:intergenic 35.0%
CAAGCTCTTTATGCTTACAT+TGG + chr7_1:889624-889643 Msa1003810:CDS 35.0%
CTTCAATTGTAAGCCATGTA+TGG + chr7_1:889755-889774 Msa1003810:intron 35.0%
ACAATATGTTAGTGTCGTGT+CGG - chr7_1:889814-889833 None:intergenic 35.0%
TCAAACTTGGACACAATCTA+TGG - chr7_1:890084-890103 None:intergenic 35.0%
GTCGTGAACAAAACTTTGTA+TGG + chr7_1:890435-890454 Msa1003810:intron 35.0%
GACTCAATTCCTTACTAGTT+GGG - chr7_1:890623-890642 None:intergenic 35.0%
TGACTCAATTCCTTACTAGT+TGG - chr7_1:890624-890643 None:intergenic 35.0%
AGCTTATGAAAGAGAGAAGA+TGG + chr7_1:890927-890946 Msa1003810:intron 35.0%
!! ACTATTTTAGATCCAAACGG+TGG + chr7_1:891053-891072 Msa1003810:CDS 35.0%
ACTGTCTACTTAATCTTTGG+TGG - chr7_1:891568-891587 None:intergenic 35.0%
! TCTATTAGCCGCTTTGATTT+AGG + chr7_1:891736-891755 Msa1003810:intron 35.0%
! ACTTTGGTTCCTAAATGTGT+GGG - chr7_1:891835-891854 None:intergenic 35.0%
! TCACTTGTTGGAGTTATTGA+TGG + chr7_1:892060-892079 Msa1003810:CDS 35.0%
AATATTGCATCTGCTGCATT+GGG + chr7_1:892183-892202 Msa1003810:CDS 35.0%
! TAACCACTTCTGTTAGGTTT+TGG - chr7_1:892270-892289 None:intergenic 35.0%
AAAGCTACTAAACCAAACCA+TGG + chr7_1:892323-892342 Msa1003810:CDS 35.0%
TAATATCCTTGTCCATGGTT+TGG - chr7_1:892338-892357 None:intergenic 35.0%
TCTACTAATATCCTTGTCCA+TGG - chr7_1:892343-892362 None:intergenic 35.0%
GTAGAATGATTGGTGAACTT+TGG + chr7_1:892358-892377 Msa1003810:CDS 35.0%
ATATCGAAGACATGTTCGAT+AGG + chr7_1:892477-892496 Msa1003810:intron 35.0%
GTTCACAAACTAAACCAAAC+TGG - chr7_1:892583-892602 None:intergenic 35.0%
AAATTGAACCAAACCGTCAT+TGG - chr7_1:892761-892780 None:intergenic 35.0%
CACTATGACTATTCAAGGTT+CGG - chr7_1:892820-892839 None:intergenic 35.0%
GATTGTTTGTAGAACCTATG+AGG - chr7_1:892936-892955 None:intergenic 35.0%
CAAACAATCATGCCATACTT+CGG + chr7_1:892947-892966 Msa1003810:intron 35.0%
TGTTGCAGATGATATCAACA+TGG + chr7_1:893226-893245 Msa1003810:CDS 35.0%
!!! AGCTTTTGTTGATTCAGACA+AGG + chr7_1:893283-893302 Msa1003810:CDS 35.0%
TAGGAGCTACCACTTTCATA+GGG - chr7_1:889549-889568 None:intergenic 40.0%
ATAGGAGCTACCACTTTCAT+AGG - chr7_1:889550-889569 None:intergenic 40.0%
GAGAAGCTTCATGCTTCTAT+GGG + chr7_1:889646-889665 Msa1003810:CDS 40.0%
TGTTTCAGGGTTCCCATTAT+TGG + chr7_1:889875-889894 Msa1003810:intron 40.0%
TTCATTGAAGTGACTTCTCG+TGG + chr7_1:889926-889945 Msa1003810:CDS 40.0%
TGTTAGCGTAAAGACATCGT+TGG + chr7_1:890677-890696 Msa1003810:intron 40.0%
CAGTATTTCACTGAGCATCA+AGG + chr7_1:890730-890749 Msa1003810:intron 40.0%
TGAATCCTAGAGACTCATCA+GGG - chr7_1:890766-890785 None:intergenic 40.0%
TATTGAAGCTGGAACAGACA+TGG - chr7_1:891208-891227 None:intergenic 40.0%
AATGCTTCTGAATTGCCTCA+AGG + chr7_1:891288-891307 Msa1003810:CDS 40.0%
AGCTTAAGAACCTTAGGCTT+CGG + chr7_1:891395-891414 Msa1003810:intron 40.0%
AGGTGTATGTTTGGATTGAC+AGG - chr7_1:891468-891487 None:intergenic 40.0%
! GACTTTGGTTCCTAAATGTG+TGG - chr7_1:891836-891855 None:intergenic 40.0%
TCTTCTGGATCTTCACTTGT+TGG + chr7_1:892048-892067 Msa1003810:CDS 40.0%
CAATATTGCATCTGCTGCAT+TGG + chr7_1:892182-892201 Msa1003810:CDS 40.0%
CATCCAAAACCTAACAGAAG+TGG + chr7_1:892264-892283 Msa1003810:CDS 40.0%
ACTAAACCAAACCATGGACA+AGG + chr7_1:892329-892348 Msa1003810:CDS 40.0%
TAAACCGAACCAAACTGTGA+TGG - chr7_1:892609-892628 None:intergenic 40.0%
CAGTCCTAATTATCAACAGC+CGG + chr7_1:892692-892711 Msa1003810:intron 40.0%
GCTGAACCGTAACAACAATT+TGG - chr7_1:892791-892810 None:intergenic 40.0%
TTGGTATGTAGTATTGTGCC+AGG + chr7_1:892900-892919 Msa1003810:intron 40.0%
GCTGAGTTTCTCTGACATTA+AGG + chr7_1:892992-893011 Msa1003810:intron 40.0%
!! AGAAAGGTACCAAGCAGAAA+TGG + chr7_1:893043-893062 Msa1003810:CDS 40.0%
GATAATCCTCCATTTCTGCT+TGG - chr7_1:893055-893074 None:intergenic 40.0%
ATCAACATGGATGCTTCTTC+CGG + chr7_1:893239-893258 Msa1003810:CDS 40.0%
TGATTCAGACAAGGCAACTA+AGG + chr7_1:893292-893311 Msa1003810:CDS 40.0%
TGAAGTTCTTAGCCATTGTG+AGG + chr7_1:893325-893344 Msa1003810:CDS 40.0%
GAAGTTCTTAGCCATTGTGA+GGG + chr7_1:893326-893345 Msa1003810:CDS 40.0%
GGAGAAGCTTCATGCTTCTA+TGG + chr7_1:889645-889664 Msa1003810:CDS 45.0%
CACGTATCGAACACCATACA+TGG - chr7_1:889771-889790 None:intergenic 45.0%
TTCAGGGTTCCCATTATTGG+AGG + chr7_1:889878-889897 Msa1003810:intron 45.0%
ATTGAAGTGACTTCTCGTGG+AGG + chr7_1:889929-889948 Msa1003810:CDS 45.0%
TTGAAGTGACTTCTCGTGGA+GGG + chr7_1:889930-889949 Msa1003810:CDS 45.0%
! TCCAGCCGAAAGCTTTAACT+TGG + chr7_1:890133-890152 Msa1003810:intron 45.0%
TCCAAGTTAAAGCTTTCGGC+TGG - chr7_1:890137-890156 None:intergenic 45.0%
! GAAGATTGGCCCAACTAGTA+AGG + chr7_1:890611-890630 Msa1003810:intron 45.0%
TTGAGTCATATGCCCTGCAA+AGG + chr7_1:890636-890655 Msa1003810:intron 45.0%
GAAATACTGAACGCCGACAA+AGG - chr7_1:890719-890738 None:intergenic 45.0%
CTAGAGACTCATCAGGGTTA+GGG - chr7_1:890760-890779 None:intergenic 45.0%
CTGAATCCTAGAGACTCATC+AGG - chr7_1:890767-890786 None:intergenic 45.0%
!! GAAGCATTGGTTGCTGTTGA+TGG - chr7_1:890980-890999 None:intergenic 45.0%
! TCTGAGCACAAAGGAAGCAT+TGG - chr7_1:890993-891012 None:intergenic 45.0%
TGCACAAACCAGAAGATGCA+GGG - chr7_1:891081-891100 None:intergenic 45.0%
ATGCACAAACCAGAAGATGC+AGG - chr7_1:891082-891101 None:intergenic 45.0%
! CAATTTTTGCAGCCTTCTCC+AGG + chr7_1:891231-891250 Msa1003810:CDS 45.0%
! CAGTCGACTTTCAGAAGTCA+GGG + chr7_1:891262-891281 Msa1003810:CDS 45.0%
! AGTCGACTTTCAGAAGTCAG+GGG + chr7_1:891263-891282 Msa1003810:CDS 45.0%
GAGCTTAAGAAGTGACCTTG+AGG - chr7_1:891306-891325 None:intergenic 45.0%
CATGATTTAGCCGAAGCCTA+AGG - chr7_1:891408-891427 None:intergenic 45.0%
CTTAGGCTTCGGCTAAATCA+TGG + chr7_1:891406-891425 Msa1003810:intron 45.0%
! GCATCATGACTTTGTTGTGG+TGG + chr7_1:891431-891450 Msa1003810:intron 45.0%
ATCCTTGAATGTGCCAAGTG+TGG + chr7_1:891595-891614 Msa1003810:intron 45.0%
TGGACAATAGAGACCACACT+TGG - chr7_1:891611-891630 None:intergenic 45.0%
TGAAACCGACCCACACATTT+AGG + chr7_1:891823-891842 Msa1003810:intron 45.0%
TGGTTCCTAAATGTGTGGGT+CGG - chr7_1:891831-891850 None:intergenic 45.0%
GTTGGAGTAAGCAGTGACTT+TGG - chr7_1:891851-891870 None:intergenic 45.0%
TGTTCTGCAGTGTCTTCTTC+TGG + chr7_1:892033-892052 Msa1003810:intron 45.0%
GTAGGTTCAGAGACACTCAA+AGG + chr7_1:892117-892136 Msa1003810:CDS 45.0%
!!! CTGTTAGGTTTTGGATGTGC+AGG - chr7_1:892261-892280 None:intergenic 45.0%
CGAACCGAACTAAACCAGTT+TGG + chr7_1:892566-892585 Msa1003810:intron 45.0%
GTGAACTGTCCATCACAGTT+TGG + chr7_1:892597-892616 Msa1003810:intron 45.0%
CTGTCCATCACAGTTTGGTT+CGG + chr7_1:892602-892621 Msa1003810:intron 45.0%
!! CACACCGGCTGTTGATAATT+AGG - chr7_1:892699-892718 None:intergenic 45.0%
! GAACCAAACCGTCATTGGTT+TGG - chr7_1:892756-892775 None:intergenic 45.0%
! TTGTTGTTACGGTTCAGCTC+AGG + chr7_1:892793-892812 Msa1003810:intron 45.0%
CATGACTAGGAACCGAAGTA+TGG - chr7_1:892962-892981 None:intergenic 45.0%
! AAGGTACCAAGCAGAAATGG+AGG + chr7_1:893046-893065 Msa1003810:CDS 45.0%
TCTGGAAGGAGATTCAGCTT+TGG + chr7_1:893133-893152 Msa1003810:CDS 45.0%
TTCAGACAAGGCAACTAAGG+AGG + chr7_1:893295-893314 Msa1003810:CDS 45.0%
TCAGACAAGGCAACTAAGGA+GGG + chr7_1:893296-893315 Msa1003810:CDS 45.0%
CATTCACTTCTCCCTCACAA+TGG - chr7_1:893340-893359 None:intergenic 45.0%
TTCTCGTGGAGGGATTGAGA+AGG + chr7_1:889940-889959 Msa1003810:CDS 50.0%
GTTGAACTCACGCCTTTGCA+GGG - chr7_1:890651-890670 None:intergenic 50.0%
AGTTGAACTCACGCCTTTGC+AGG - chr7_1:890652-890671 None:intergenic 50.0%
CCTAGAGACTCATCAGGGTT+AGG - chr7_1:890761-890780 None:intergenic 50.0%
CCTAACCCTGATGAGTCTCT+AGG + chr7_1:890758-890777 Msa1003810:intron 50.0%
GCACAAACCAGAAGATGCAG+GGG - chr7_1:891080-891099 None:intergenic 50.0%
ACTGGATGTGTTCCTGGAGA+AGG - chr7_1:891246-891265 None:intergenic 50.0%
AAGTCGACTGGATGTGTTCC+TGG - chr7_1:891252-891271 None:intergenic 50.0%
! CCTGACTTCTGAAAGTCGAC+TGG - chr7_1:891264-891283 None:intergenic 50.0%
! CCAGTCGACTTTCAGAAGTC+AGG + chr7_1:891261-891280 Msa1003810:CDS 50.0%
AGGCTTCGGCTAAATCATGG+CGG + chr7_1:891409-891428 Msa1003810:intron 50.0%
GCGGCATCATGACTTTGTTG+TGG + chr7_1:891428-891447 Msa1003810:intron 50.0%
GACCACACTTGGCACATTCA+AGG - chr7_1:891600-891619 None:intergenic 50.0%
! GTGTGGGTCGGTTTCACAAT+AGG - chr7_1:891819-891838 None:intergenic 50.0%
GAATCGGGCCAAACCAATGA+CGG + chr7_1:892745-892764 Msa1003810:intron 50.0%
CTATGAGGCACACAAACACC+TGG - chr7_1:892921-892940 None:intergenic 50.0%
CAGGTGTTTGTGTGCCTCAT+AGG + chr7_1:892919-892938 Msa1003810:intron 50.0%
! GAGCATTGTAACCGACTACG+CGG + chr7_1:893091-893110 Msa1003810:CDS 50.0%
AGCATTGTAACCGACTACGC+GGG + chr7_1:893092-893111 Msa1003810:CDS 50.0%
TCCAGAAACCGTTGTTGCAG+TGG - chr7_1:893119-893138 None:intergenic 50.0%
! CTGCAACAACGGTTTCTGGA+AGG + chr7_1:893119-893138 Msa1003810:CDS 50.0%
! GGAAGGAGATTCAGCTTTGG+TGG + chr7_1:893136-893155 Msa1003810:CDS 50.0%
CGATTCTTGTCAGACTCCTG+AGG + chr7_1:893178-893197 Msa1003810:CDS 50.0%
ACTCCTGAGGAGAGTAGTTC+TGG + chr7_1:893191-893210 Msa1003810:CDS 50.0%
TCACCAGAACTACTCTCCTC+AGG - chr7_1:893197-893216 None:intergenic 50.0%
AACATGGATGCTTCTTCCGG+TGG + chr7_1:893242-893261 Msa1003810:CDS 50.0%
AGAATCCACTCTTGCTCCAC+CGG - chr7_1:893261-893280 None:intergenic 50.0%
TGTGAGGGAGAAGTGAATGC+TGG + chr7_1:893341-893360 Msa1003810:CDS 50.0%
AGACTCATCAGGGTTAGGGC+AGG - chr7_1:890756-890775 None:intergenic 55.0%
CTGACTTCTTCCTCCTCCGA+CGG - chr7_1:892221-892240 None:intergenic 55.0%
GGGCCAAACCAATGACGGTT+TGG + chr7_1:892750-892769 Msa1003810:intron 55.0%
GCATTGTAACCGACTACGCG+GGG + chr7_1:893093-893112 Msa1003810:CDS 55.0%
GCCACTGCAACAACGGTTTC+TGG + chr7_1:893115-893134 Msa1003810:CDS 55.0%
TTCTTCCGGTGGAGCAAGAG+TGG + chr7_1:893253-893272 Msa1003810:CDS 55.0%
GAGGGAGAAGTGAATGCTGG+CGG + chr7_1:893344-893363 Msa1003810:CDS 55.0%
AGATGCAGGGGTCCACCGTT+TGG - chr7_1:891068-891087 None:intergenic 60.0%
ACTTCTTCCTCCTCCGACGG+CGG - chr7_1:892218-892237 None:intergenic 60.0%
CGGTGGACCCCTGCATCTTC+TGG + chr7_1:891070-891089 Msa1003810:CDS 65.0%
TTGCAGTGGCCCCGCGTAGT+CGG - chr7_1:893105-893124 None:intergenic 65.0%
ACGCGGGGCCACTGCAACAA+CGG + chr7_1:893108-893127 Msa1003810:CDS 65.0%
TGGGCGTCCAACGCCGCCGT+CGG + chr7_1:892202-892221 Msa1003810:CDS 75.0%
TCCAACGCCGCCGTCGGAGG+AGG + chr7_1:892208-892227 Msa1003810:CDS 75.0%
TCCTCCTCCGACGGCGGCGT+TGG - chr7_1:892212-892231 None:intergenic 75.0%
! GCGTCCAACGCCGCCGTCGG+AGG + chr7_1:892205-892224 Msa1003810:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 889024 893421 889024 ID=Msa1003810;Name=Msa1003810
chr7_1 mRNA 889024 893421 889024 ID=Msa1003810-mRNA-1;Parent=Msa1003810;Name=Msa1003810-mRNA-1;_AED=0.09;_eAED=0.09;_QI=126|0.83|0.57|1|0.83|0.71|7|0|437
chr7_1 exon 889024 889132 889024 ID=Msa1003810-mRNA-1:exon:394;Parent=Msa1003810-mRNA-1
chr7_1 exon 889491 889680 889491 ID=Msa1003810-mRNA-1:exon:395;Parent=Msa1003810-mRNA-1
chr7_1 exon 889883 889961 889883 ID=Msa1003810-mRNA-1:exon:396;Parent=Msa1003810-mRNA-1
chr7_1 exon 890929 891091 890929 ID=Msa1003810-mRNA-1:exon:397;Parent=Msa1003810-mRNA-1
chr7_1 exon 891184 891309 891184 ID=Msa1003810-mRNA-1:exon:398;Parent=Msa1003810-mRNA-1
chr7_1 exon 892043 892407 892043 ID=Msa1003810-mRNA-1:exon:399;Parent=Msa1003810-mRNA-1
chr7_1 exon 893014 893421 893014 ID=Msa1003810-mRNA-1:exon:400;Parent=Msa1003810-mRNA-1
chr7_1 five_prime_UTR 889024 889132 889024 ID=Msa1003810-mRNA-1:five_prime_utr;Parent=Msa1003810-mRNA-1
chr7_1 five_prime_UTR 889491 889507 889491 ID=Msa1003810-mRNA-1:five_prime_utr;Parent=Msa1003810-mRNA-1
chr7_1 CDS 889508 889680 889508 ID=Msa1003810-mRNA-1:cds;Parent=Msa1003810-mRNA-1
chr7_1 CDS 889883 889961 889883 ID=Msa1003810-mRNA-1:cds;Parent=Msa1003810-mRNA-1
chr7_1 CDS 890929 891091 890929 ID=Msa1003810-mRNA-1:cds;Parent=Msa1003810-mRNA-1
chr7_1 CDS 891184 891309 891184 ID=Msa1003810-mRNA-1:cds;Parent=Msa1003810-mRNA-1
chr7_1 CDS 892043 892407 892043 ID=Msa1003810-mRNA-1:cds;Parent=Msa1003810-mRNA-1
chr7_1 CDS 893014 893421 893014 ID=Msa1003810-mRNA-1:cds;Parent=Msa1003810-mRNA-1
Gene Sequence

>Msa1003810

ATGGCATCAACATCATGTTTTTTCAACAACAATGATTTCCCTATGAAAGTGGTAGCTCCTATGTCTCATTCATATCCTGAACCTCTTGCAAAATATGATGATGTTGTGGCAAATCCCAAGCTCTTTATGCTTACATTGGAGAAGCTTCATGCTTCTATGGGTACTAAGTTCATGGTTCCCATTATTGGAGGAAAAGAACTAGATTTGTGTCGACTCTTCATTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAAGAAGTAACTGCAGCTTTCAGTTTTCCATCAACAGCAACCAATGCTTCCTTTGTGCTCAGAAAATACTATTCTTCATTGCTTTATCACTATGAGCAAATCTACTATTTTAGATCCAAACGGTGGACCCCTGCATCTTCTGATGCTTTGCAGAATCAATCAACCATGTCTGTTCCAGCTTCAATAACGCAATTTTTGCAGCCTTCTCCAGGAACACATCCAGTCGACTTTCAGAAGTCAGGGGTTAATGCTTCTGAATTGCCTCAAGTGTCTTCTTCTGGATCTTCACTTGTTGGAGTTATTGATGGAAAGTTTGAAAGTGGATATCTAGTTTCAGTTTCAGTAGGTTCAGAGACACTCAAAGGTGTACTATATGAGTCTCCACAAAGCATTAAAATTAATAATAACAATATTGCATCTGCTGCATTGGGCGTCCAACGCCGCCGTCGGAGGAGGAAGAAGTCAGAAATAAAAAGGAGAGATCCTGCACATCCAAAACCTAACAGAAGTGGTTACAATTTCTTCTTTGCTGAACAACATGCAAGACTAAAGCTACTAAACCAAACCATGGACAAGGATATTAGTAGAATGATTGGTGAACTTTGGAACAACTTAAAAGAGTCTGAGAAAACAGTTTATCAAGAAAAGGCTATTAAGGATAAAGAAAGGTACCAAGCAGAAATGGAGGATTATCGCGATAAAATGAAGACGAGCATTGTAACCGACTACGCGGGGCCACTGCAACAACGGTTTCTGGAAGGAGATTCAGCTTTGGTGGACATTGACATAAAAATGCACGATTCTTGTCAGACTCCTGAGGAGAGTAGTTCTGGTGAAAGTGACTATGTTGCAGATGATATCAACATGGATGCTTCTTCCGGTGGAGCAAGAGTGGATTCTGAAGCTTTTGTTGATTCAGACAAGGCAACTAAGGAGGGAGTTATTGAAGTTCTTAGCCATTGTGAGGGAGAAGTGAATGCTGGCGGAATTCAACAGACTCAAAAGATGAATGAGAGCCAAAACATGTTATCCTTACTTTAG

Protein sequence

>Msa1003810

MASTSCFFNNNDFPMKVVAPMSHSYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMVPIIGGKELDLCRLFIEVTSRGGIEKLMKERRWKEVTAAFSFPSTATNASFVLRKYYSSLLYHYEQIYYFRSKRWTPASSDALQNQSTMSVPASITQFLQPSPGTHPVDFQKSGVNASELPQVSSSGSSLVGVIDGKFESGYLVSVSVGSETLKGVLYESPQSIKINNNNIASAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDYAGPLQQRFLEGDSALVDIDIKMHDSCQTPEESSSGESDYVADDINMDASSGGARVDSEAFVDSDKATKEGVIEVLSHCEGEVNAGGIQQTQKMNESQNMLSLL*