AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1003840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003840 MtrunA17_Chr7g0214501 87.216 352 3 1 86 437 1 310 0.0 619
Msa1003840 MtrunA17_Chr1g0213311 61.340 388 133 6 1 377 1 382 8.02e-167 475
Msa1003840 MtrunA17_Chr7g0214491 97.647 85 2 0 1 85 1 85 5.49e-57 183
Msa1003840 MtrunA17_Chr3g0079841 38.079 302 124 6 22 323 26 264 1.76e-54 182
Msa1003840 MtrunA17_Chr3g0143581 51.852 135 61 3 25 156 20 153 2.59e-40 142
Msa1003840 MtrunA17_Chr3g0143571 45.098 153 78 2 190 337 23 174 6.23e-37 133
Msa1003840 MtrunA17_Chr5g0435401 24.701 251 126 7 67 313 70 261 3.42e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003840 AT1G04880.1 55.080 374 139 6 1 356 1 363 1.39e-120 359
Msa1003840 AT1G76110.1 42.812 313 156 3 25 327 27 326 7.54e-82 256
Msa1003840 AT3G13350.1 47.157 299 126 8 30 323 34 305 7.56e-79 247
Msa1003840 AT1G55650.1 39.867 301 140 6 32 331 30 290 3.56e-64 210

Find 93 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAATTCTCAGTTACTATT+TGG 0.154165 7_1:+920406 Msa1003840:five_prime_UTR
TGTTCTGCAGTGTCTTCTTC+TGG 0.231989 7_1:+923313 Msa1003840:intron
GGAGAAGCTTCATGCTTCTA+TGG 0.249345 7_1:+920940 Msa1003840:CDS
GGAAGAAGTCAGAAATAAAA+AGG 0.265856 7_1:+923509 Msa1003840:CDS
TTATCAAGAAAAGGCTATTA+AGG 0.267196 7_1:+924296 Msa1003840:CDS
TAACCACTTCTGTTAGGTTT+TGG 0.270511 7_1:-923547 None:intergenic
TGTTTCAGGGTTCCCATTAT+TGG 0.277531 7_1:+921155 Msa1003840:intron
CGGTGGACCCCTGCATCTTC+TGG 0.281007 7_1:+922350 Msa1003840:CDS
TCTTCTGGATCTTCACTTGT+TGG 0.289352 7_1:+923328 Msa1003840:CDS
ATAGGAGCTACCACTTTCAT+AGG 0.334690 7_1:-920842 None:intergenic
GCCACTGCAACAACGGTTTC+CGG 0.336737 7_1:+924395 Msa1003840:CDS
TCACTTGTTGGAGTTATTGA+TGG 0.342127 7_1:+923340 Msa1003840:CDS
TAATATCCTTGTCCATGGTT+TGG 0.351606 7_1:-923615 None:intergenic
AAGTCGACTGGATGTGTTCC+TGG 0.356132 7_1:-922529 None:intergenic
TCCTCCTCCGACGGCGGCGT+TGG 0.371177 7_1:-923489 None:intergenic
ACTCCTGAGGAGAGTAGTTC+TGG 0.384663 7_1:+924471 Msa1003840:CDS
ATCAACATGGATGCTTCTTC+CGG 0.386689 7_1:+924519 Msa1003840:CDS
CAATATTGCATCTGCTGCAT+TGG 0.389249 7_1:+923462 Msa1003840:CDS
GTAGAATGATTGGTGAACTT+TGG 0.397195 7_1:+923638 Msa1003840:CDS
AGATGCAGGGGTCCACCGTT+TGG 0.409841 7_1:-922345 None:intergenic
AAAGTAAGGATAACATGTTT+TGG 0.411072 7_1:-924677 None:intergenic
AAATTGTAACCACTTCTGTT+AGG 0.413038 7_1:-923553 None:intergenic
GAAGCATTGGTTGCTGTTGA+TGG 0.418040 7_1:-922257 None:intergenic
AGAAAGGTACCAAGCAGAAA+TGG 0.423266 7_1:+924323 Msa1003840:CDS
CAAGCTCTTTATGCTTACAT+TGG 0.448632 7_1:+920919 Msa1003840:CDS
AAGGATATTAGTAGAATGAT+TGG 0.451525 7_1:+923628 Msa1003840:CDS
CCAGTCGACTTTCAGAAGTC+AGG 0.453438 7_1:+922541 Msa1003840:CDS
CATTAAGGTTTATCAAGAAA+AGG 0.456846 7_1:+924287 Msa1003840:intron
CAATGTAAGCATAAAGAGCT+TGG 0.458599 7_1:-920918 None:intergenic
ATTGATGGAAAGTTTGAAAG+TGG 0.459678 7_1:+923355 Msa1003840:CDS
ACGCGGGGCCACTGCAACAA+CGG 0.461362 7_1:+924388 Msa1003840:CDS
TCCGGAAGGAGATTCAGCTT+TGG 0.463701 7_1:+924413 Msa1003840:CDS
AGAATCCACTCTTGCTCCAC+CGG 0.466317 7_1:-924538 None:intergenic
GGAAGGAGATTCAGCTTTGG+TGG 0.466851 7_1:+924416 Msa1003840:CDS
AATATTGCATCTGCTGCATT+GGG 0.466960 7_1:+923463 Msa1003840:CDS
TGATTCAGACAAGGCAACTA+AGG 0.470199 7_1:+924572 Msa1003840:CDS
TCCAACGCCGCCGTCGGAGG+AGG 0.470219 7_1:+923488 Msa1003840:CDS
AGCTTATGAAAGAGAGAAGA+TGG 0.479121 7_1:+922207 Msa1003840:intron
ACCAAAGCTGAATCTCCTTC+CGG 0.486239 7_1:-924414 None:intergenic
TATCTAGTTTCAGTTTCAGT+AGG 0.493509 7_1:+923379 Msa1003840:CDS
TTGCAGTGGCCCCGCGTAGT+CGG 0.498245 7_1:-924382 None:intergenic
AATGTAAGCATAAAGAGCTT+GGG 0.499008 7_1:-920917 None:intergenic
TCCGGAAACCGTTGTTGCAG+TGG 0.505578 7_1:-924396 None:intergenic
TCTGAGCACAAAGGAAGCAT+TGG 0.506402 7_1:-922270 None:intergenic
ACTGGATGTGTTCCTGGAGA+AGG 0.512094 7_1:-922523 None:intergenic
TTCAGGGTTCCCATTATTGG+AGG 0.517053 7_1:+921158 Msa1003840:intron
GAGAAGCTTCATGCTTCTAT+GGG 0.518689 7_1:+920941 Msa1003840:CDS
TGGGCGTCCAACGCCGCCGT+CGG 0.523765 7_1:+923482 Msa1003840:CDS
TTCATTGAAGTGACTTCTCG+TGG 0.526953 7_1:+921206 Msa1003840:CDS
ATGCACAAACCAGAAGATGC+AGG 0.528390 7_1:-922359 None:intergenic
CAATGATTTCCCTATGAAAG+TGG 0.531885 7_1:+920832 Msa1003840:CDS
AAATTCTCTACACTAAAGTA+AGG 0.535953 7_1:-924691 None:intergenic
GATAATCCTCCATTTCTGCT+TGG 0.539679 7_1:-924332 None:intergenic
TCTACTAATATCCTTGTCCA+TGG 0.543804 7_1:-923620 None:intergenic
CAGTCGACTTTCAGAAGTCA+GGG 0.544869 7_1:+922542 Msa1003840:CDS
TCACCAGAACTACTCTCCTC+AGG 0.547824 7_1:-924474 None:intergenic
CCTGACTTCTGAAAGTCGAC+TGG 0.548629 7_1:-922541 None:intergenic
TGCACAAACCAGAAGATGCA+GGG 0.551653 7_1:-922358 None:intergenic
GCGTCCAACGCCGCCGTCGG+AGG 0.562184 7_1:+923485 Msa1003840:CDS
TTGAAGTGACTTCTCGTGGA+GGG 0.562395 7_1:+921210 Msa1003840:CDS
GAAGTTCTTAGCCATTGTGA+GGG 0.564422 7_1:+924606 Msa1003840:CDS
TCAGGATATGAATGAGACAT+AGG 0.570116 7_1:-920860 None:intergenic
AGGCTATTAAGGATAAAGAA+AGG 0.573816 7_1:+924307 Msa1003840:CDS
TTCTTCCGGTGGAGCAAGAG+TGG 0.579438 7_1:+924533 Msa1003840:CDS
TGAAGTTCTTAGCCATTGTG+AGG 0.580768 7_1:+924605 Msa1003840:CDS
CTGACTTCTTCCTCCTCCGA+CGG 0.584477 7_1:-923498 None:intergenic
TATTGAAGCTGGAACAGACA+TGG 0.585157 7_1:-922485 None:intergenic
AACATGGATGCTTCTTCCGG+TGG 0.585693 7_1:+924522 Msa1003840:CDS
AAATTTGTTTGAAAGGTAGG+AGG 0.593616 7_1:+920771 Msa1003840:intron
TCAGACAAGGCAACTAAGGA+GGG 0.601091 7_1:+924576 Msa1003840:CDS
CATCCAAAACCTAACAGAAG+TGG 0.603836 7_1:+923544 Msa1003840:CDS
TGCAAAATATGATGATGTTG+TGG 0.605066 7_1:+920889 Msa1003840:CDS
ACTTCTTCCTCCTCCGACGG+CGG 0.605098 7_1:-923495 None:intergenic
TTCAGACAAGGCAACTAAGG+AGG 0.611052 7_1:+924575 Msa1003840:CDS
AGCATTGTAACCGACTACGC+GGG 0.614088 7_1:+924372 Msa1003840:CDS
AAAGCTACTAAACCAAACCA+TGG 0.615278 7_1:+923603 Msa1003840:CDS
AATGCTTCTGAATTGCCTCA+AGG 0.618648 7_1:+922568 Msa1003840:CDS
TAGGAGCTACCACTTTCATA+GGG 0.623246 7_1:-920841 None:intergenic
AAGGTACCAAGCAGAAATGG+AGG 0.630994 7_1:+924326 Msa1003840:CDS
TGTGAGGGAGAAGTGAATGC+TGG 0.631243 7_1:+924621 Msa1003840:CDS
CGATTCTTGTCAGACTCCTG+AGG 0.642082 7_1:+924458 Msa1003840:CDS
CTGCAACAACGGTTTCCGGA+AGG 0.643574 7_1:+924399 Msa1003840:CDS
CATTCACTTCTCCCTCACAA+TGG 0.653715 7_1:-924617 None:intergenic
TTCTCGTGGAGGGATTGAGA+AGG 0.661472 7_1:+921220 Msa1003840:CDS
GCACAAACCAGAAGATGCAG+GGG 0.670000 7_1:-922357 None:intergenic
ACTAAACCAAACCATGGACA+AGG 0.670033 7_1:+923609 Msa1003840:CDS
GTAGGTTCAGAGACACTCAA+AGG 0.670192 7_1:+923397 Msa1003840:CDS
GCATTGTAACCGACTACGCG+GGG 0.675516 7_1:+924373 Msa1003840:CDS
ATTGAAGTGACTTCTCGTGG+AGG 0.683803 7_1:+921209 Msa1003840:CDS
GAGCATTGTAACCGACTACG+CGG 0.688230 7_1:+924371 Msa1003840:CDS
AGTCGACTTTCAGAAGTCAG+GGG 0.692181 7_1:+922543 Msa1003840:CDS
TGTTGCAGATGATATCAACA+TGG 0.720650 7_1:+924506 Msa1003840:CDS
GAGGGAGAAGTGAATGCTGG+CGG 0.753755 7_1:+924624 Msa1003840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTATTCATATTCATTT+AGG + chr7_1:920454-920473 Msa1003840:intron 10.0%
!! AAATATTAAAAACATCAAAT+AGG - chr7_1:921662-921681 None:intergenic 10.0%
!!! AGTATTACATATATAATTTT+TGG + chr7_1:922143-922162 Msa1003840:intron 10.0%
!! ATAAAAAACATATACAAGAA+CGG - chr7_1:920544-920563 None:intergenic 15.0%
!! TATCATCAATAATTAATCAT+TGG + chr7_1:920561-920580 Msa1003840:intron 15.0%
!!! AAAATGAACATGTTTTTATT+AGG - chr7_1:921614-921633 None:intergenic 15.0%
!!! GATGTTTTTAATATTTAATC+AGG + chr7_1:921666-921685 Msa1003840:intron 15.0%
!!! ATTTTTTCTTCTTTTCTTTT+TGG - chr7_1:922628-922647 None:intergenic 15.0%
!! GAAAAGAAGAAAAAATAATT+TGG + chr7_1:922632-922651 Msa1003840:intron 15.0%
!!! TTGTAATTTTGATAAATTCA+TGG - chr7_1:922911-922930 None:intergenic 15.0%
!!! TTTGTAATTTTCAATACATT+TGG + chr7_1:923071-923090 Msa1003840:intron 15.0%
!!! AATAGCTTTATTTATTTTAC+AGG - chr7_1:923235-923254 None:intergenic 15.0%
!!! TTATTAATTTTAATGCTTTG+TGG - chr7_1:923439-923458 None:intergenic 15.0%
!! CAATTTCCTTAAATTATTAT+TGG + chr7_1:924161-924180 Msa1003840:intron 15.0%
!! TACATACCAATAATAATTTA+AGG - chr7_1:924170-924189 None:intergenic 15.0%
!!! CATATACCTATATTGTTTTT+TGG + chr7_1:920735-920754 Msa1003840:intron 20.0%
!! TAGAAACCAAAAAACAATAT+AGG - chr7_1:920744-920763 None:intergenic 20.0%
!!! AAACATCAAATTTGTTTGAA+AGG + chr7_1:920764-920783 Msa1003840:intron 20.0%
!!! TATAACTGAAATTTTGTTTC+AGG + chr7_1:921141-921160 Msa1003840:intron 20.0%
!!! ATAACTGAAATTTTGTTTCA+GGG + chr7_1:921142-921161 Msa1003840:intron 20.0%
!! AATAAATATGTTCATGAATG+AGG + chr7_1:921387-921406 Msa1003840:intron 20.0%
!!! AACATGTTCATTTTATTTCA+AGG + chr7_1:921620-921639 Msa1003840:intron 20.0%
!!! TATTTTACAAAATTCGATGT+TGG + chr7_1:921845-921864 Msa1003840:intron 20.0%
!! ATAATATTAAGTACCTTTGT+CGG + chr7_1:921983-922002 Msa1003840:intron 20.0%
!! TCATCTATGAAAAAAAGTTT+AGG - chr7_1:922074-922093 None:intergenic 20.0%
!!! TTTTAATGTTCAATATGACT+AGG - chr7_1:922768-922787 None:intergenic 20.0%
!! TGACTAACAAAATATACATT+TGG - chr7_1:922943-922962 None:intergenic 20.0%
!! TCAATCTGGTTAAATATATT+TGG + chr7_1:923163-923182 Msa1003840:intron 20.0%
!! AAATGAGATTGAAAAACTAA+AGG - chr7_1:923212-923231 None:intergenic 20.0%
!!! TAACAATTCAAATTGGTTTT+TGG + chr7_1:923907-923926 Msa1003840:intron 20.0%
!!! TTGGTTATTTTTTAACGATT+TGG + chr7_1:923926-923945 Msa1003840:intron 20.0%
!! CTCTCTGTATTTTCTTAATA+AGG - chr7_1:920322-920341 None:intergenic 25.0%
!! ATCAAATTTGTTTGAAAGGT+AGG + chr7_1:920768-920787 Msa1003840:intron 25.0%
! CATATTTATTTGCTCAAACT+TGG - chr7_1:921377-921396 None:intergenic 25.0%
! AATCACAAGCATTAAAATAG+TGG - chr7_1:921567-921586 None:intergenic 25.0%
! GGAAAATTTCTTATACTAGT+TGG - chr7_1:921593-921612 None:intergenic 25.0%
!!! TTCATTTTATTTCAAGGACA+TGG + chr7_1:921626-921645 Msa1003840:intron 25.0%
! GATCTATGTACAAATCTATA+GGG - chr7_1:922119-922138 None:intergenic 25.0%
! AGATCTATGTACAAATCTAT+AGG - chr7_1:922120-922139 None:intergenic 25.0%
! CACAAATTGCTATAAAGATA+AGG - chr7_1:922183-922202 None:intergenic 25.0%
!!! TCTACTATTTTAGATCCAAA+CGG + chr7_1:922330-922349 Msa1003840:CDS 25.0%
!! GTATATTTTGTTAGTCACTT+TGG + chr7_1:922946-922965 Msa1003840:intron 25.0%
! GATTGATTAAGTAACTTTGT+TGG - chr7_1:923149-923168 None:intergenic 25.0%
! ACAAAGTTACTTAATCAATC+TGG + chr7_1:923149-923168 Msa1003840:intron 25.0%
! TGATTTATATATGCATGACT+TGG - chr7_1:923261-923280 None:intergenic 25.0%
! TAGTTAACAATAACAAGTAG+TGG + chr7_1:923286-923305 Msa1003840:intron 25.0%
! AAGGATATTAGTAGAATGAT+TGG + chr7_1:923628-923647 Msa1003840:CDS 25.0%
!! TTTGATTTAACAGTTTGCTT+TGG - chr7_1:923804-923823 None:intergenic 25.0%
! TTCGGTTTAACAATTCAAAT+TGG + chr7_1:923900-923919 Msa1003840:intron 25.0%
!! ATACAAGTTCGATTTTGAAT+CGG + chr7_1:924009-924028 Msa1003840:intron 25.0%
! AGCATATTAATAACATGACT+AGG - chr7_1:924255-924274 None:intergenic 25.0%
! CATTAAGGTTTATCAAGAAA+AGG + chr7_1:924287-924306 Msa1003840:intron 25.0%
! TTATCAAGAAAAGGCTATTA+AGG + chr7_1:924296-924315 Msa1003840:CDS 25.0%
!! AAAGTAAGGATAACATGTTT+TGG - chr7_1:924680-924699 None:intergenic 25.0%
CTCAATTCTCAGTTACTATT+TGG + chr7_1:920406-920425 Msa1003840:five_prime_UTR 30.0%
ATACAAGAACGGAACAAATT+TGG - chr7_1:920533-920552 None:intergenic 30.0%
! AAATTTGTTTGAAAGGTAGG+AGG + chr7_1:920771-920790 Msa1003840:intron 30.0%
! ACATCATCATATTTTGCAAG+AGG - chr7_1:920887-920906 None:intergenic 30.0%
! TGCAAAATATGATGATGTTG+TGG + chr7_1:920889-920908 Msa1003840:CDS 30.0%
AATGTAAGCATAAAGAGCTT+GGG - chr7_1:920920-920939 None:intergenic 30.0%
ACACTAACATATTGTTGTCA+TGG + chr7_1:921099-921118 Msa1003840:intron 30.0%
ACATATTGTTGTCATGGATT+TGG + chr7_1:921105-921124 Msa1003840:intron 30.0%
! AGTTCTTTTCCTCCAATAAT+GGG - chr7_1:921170-921189 None:intergenic 30.0%
! TAGTTCTTTTCCTCCAATAA+TGG - chr7_1:921171-921190 None:intergenic 30.0%
AATGTCCAAGTTAAAGCTTT+CGG - chr7_1:921421-921440 None:intergenic 30.0%
ACTAAATACACTCAACAGAT+TGG + chr7_1:921484-921503 Msa1003840:intron 30.0%
TCACGACTCAATTCAATTTA+TGG - chr7_1:921702-921721 None:intergenic 30.0%
TCGTGAACAAAACTTTGTAT+GGG + chr7_1:921716-921735 Msa1003840:intron 30.0%
TTATATCAGTCAACGAAGAT+TGG + chr7_1:921877-921896 Msa1003840:intron 30.0%
! ATAGTATTTTCTGAGCACAA+AGG - chr7_1:922282-922301 None:intergenic 30.0%
AAAAATTGCGTTATTGAAGC+TGG - chr7_1:922499-922518 None:intergenic 30.0%
TATATGAGCTTAAGAACCTT+AGG + chr7_1:922669-922688 Msa1003840:intron 30.0%
AATATGACTAGGTGTATGTT+TGG - chr7_1:922757-922776 None:intergenic 30.0%
TAAAAGTAGACATAGAAGTG+CGG + chr7_1:922783-922802 Msa1003840:intron 30.0%
GTAACTGTCTACTTAATCTT+TGG - chr7_1:922851-922870 None:intergenic 30.0%
ACAAAATATACATTTGGCGA+TGG - chr7_1:922937-922956 None:intergenic 30.0%
AGTAGTTTCCTAAATCAAAG+CGG - chr7_1:923027-923046 None:intergenic 30.0%
ATTGATGGAAAGTTTGAAAG+TGG + chr7_1:923355-923374 Msa1003840:CDS 30.0%
! TATCTAGTTTCAGTTTCAGT+AGG + chr7_1:923379-923398 Msa1003840:CDS 30.0%
GGAAGAAGTCAGAAATAAAA+AGG + chr7_1:923509-923528 Msa1003840:CDS 30.0%
AAATTGTAACCACTTCTGTT+AGG - chr7_1:923556-923575 None:intergenic 30.0%
! TAACAGTTTGCTTTGGTATT+TGG - chr7_1:923797-923816 None:intergenic 30.0%
! TAAACCAAACTGGTTTAGTT+CGG - chr7_1:923853-923872 None:intergenic 30.0%
!!! TAACGATTTGGTTAGTTTTC+TGG + chr7_1:923938-923957 Msa1003840:intron 30.0%
! TACAAGTTCGATTTTGAATC+GGG + chr7_1:924010-924029 Msa1003840:intron 30.0%
! GTATTGCCAAATTGTTGTTA+CGG + chr7_1:924062-924081 Msa1003840:intron 30.0%
TTAGACACTATGACTATTCA+AGG - chr7_1:924105-924124 None:intergenic 30.0%
TAACACAACACTAATACATG+TGG + chr7_1:924122-924141 Msa1003840:intron 30.0%
AGGCTATTAAGGATAAAGAA+AGG + chr7_1:924307-924326 Msa1003840:CDS 30.0%
AAGCAGCAATGTCAAAGAAA+CGG - chr7_1:920498-920517 None:intergenic 35.0%
!!! AGGTAGGAGGTTTTAATTGA+TGG + chr7_1:920784-920803 Msa1003840:intron 35.0%
CAATGATTTCCCTATGAAAG+TGG + chr7_1:920832-920851 Msa1003840:CDS 35.0%
TCAGGATATGAATGAGACAT+AGG - chr7_1:920863-920882 None:intergenic 35.0%
! TCATATTTTGCAAGAGGTTC+AGG - chr7_1:920881-920900 None:intergenic 35.0%
CAATGTAAGCATAAAGAGCT+TGG - chr7_1:920921-920940 None:intergenic 35.0%
CAAGCTCTTTATGCTTACAT+TGG + chr7_1:920919-920938 Msa1003840:CDS 35.0%
CTTCAATTGTAAGCCATGTA+TGG + chr7_1:921035-921054 Msa1003840:intron 35.0%
ACAATATGTTAGTGTCGTGT+CGG - chr7_1:921094-921113 None:intergenic 35.0%
TCAAACTTGGACACAATCTA+TGG - chr7_1:921364-921383 None:intergenic 35.0%
GTCGTGAACAAAACTTTGTA+TGG + chr7_1:921715-921734 Msa1003840:intron 35.0%
GACTCAATTCCTTACTAGTT+GGG - chr7_1:921903-921922 None:intergenic 35.0%
TGACTCAATTCCTTACTAGT+TGG - chr7_1:921904-921923 None:intergenic 35.0%
AGCTTATGAAAGAGAGAAGA+TGG + chr7_1:922207-922226 Msa1003840:intron 35.0%
!! ACTATTTTAGATCCAAACGG+TGG + chr7_1:922333-922352 Msa1003840:CDS 35.0%
ACTGTCTACTTAATCTTTGG+TGG - chr7_1:922848-922867 None:intergenic 35.0%
! TCTATTAGCCGCTTTGATTT+AGG + chr7_1:923016-923035 Msa1003840:intron 35.0%
! ACTTTGGTTCCTAAATGTGT+GGG - chr7_1:923115-923134 None:intergenic 35.0%
! TCACTTGTTGGAGTTATTGA+TGG + chr7_1:923340-923359 Msa1003840:CDS 35.0%
AATATTGCATCTGCTGCATT+GGG + chr7_1:923463-923482 Msa1003840:CDS 35.0%
! TAACCACTTCTGTTAGGTTT+TGG - chr7_1:923550-923569 None:intergenic 35.0%
AAAGCTACTAAACCAAACCA+TGG + chr7_1:923603-923622 Msa1003840:CDS 35.0%
TAATATCCTTGTCCATGGTT+TGG - chr7_1:923618-923637 None:intergenic 35.0%
TCTACTAATATCCTTGTCCA+TGG - chr7_1:923623-923642 None:intergenic 35.0%
GTAGAATGATTGGTGAACTT+TGG + chr7_1:923638-923657 Msa1003840:CDS 35.0%
ATATCGAAGACATGTTCGAT+AGG + chr7_1:923757-923776 Msa1003840:intron 35.0%
GTTCACAAACTAAACCAAAC+TGG - chr7_1:923863-923882 None:intergenic 35.0%
TGTATAAATGTTTGACGCAC+CGG - chr7_1:923994-924013 None:intergenic 35.0%
AAATTGAACCAAACCGTCAT+TGG - chr7_1:924041-924060 None:intergenic 35.0%
CACTATGACTATTCAAGGTT+CGG - chr7_1:924100-924119 None:intergenic 35.0%
GATTGTTTGTAGAACCTATG+AGG - chr7_1:924216-924235 None:intergenic 35.0%
CAAACAATCATGCCATACTT+CGG + chr7_1:924227-924246 Msa1003840:intron 35.0%
TGTTGCAGATGATATCAACA+TGG + chr7_1:924506-924525 Msa1003840:CDS 35.0%
!!! AGCTTTTGTTGATTCAGACA+AGG + chr7_1:924563-924582 Msa1003840:CDS 35.0%
TAGGAGCTACCACTTTCATA+GGG - chr7_1:920844-920863 None:intergenic 40.0%
ATAGGAGCTACCACTTTCAT+AGG - chr7_1:920845-920864 None:intergenic 40.0%
GAGAAGCTTCATGCTTCTAT+GGG + chr7_1:920941-920960 Msa1003840:CDS 40.0%
CATGTATCGAACACCATACA+TGG - chr7_1:921051-921070 None:intergenic 40.0%
TGTTTCAGGGTTCCCATTAT+TGG + chr7_1:921155-921174 Msa1003840:intron 40.0%
TTCATTGAAGTGACTTCTCG+TGG + chr7_1:921206-921225 Msa1003840:CDS 40.0%
TGTTAGCGTAAAGACATCGT+TGG + chr7_1:921957-921976 Msa1003840:intron 40.0%
CAGTATTTCACTGAGCATCA+AGG + chr7_1:922010-922029 Msa1003840:intron 40.0%
TGAATCCTAGAGACTCATCA+GGG - chr7_1:922046-922065 None:intergenic 40.0%
TATTGAAGCTGGAACAGACA+TGG - chr7_1:922488-922507 None:intergenic 40.0%
AATGCTTCTGAATTGCCTCA+AGG + chr7_1:922568-922587 Msa1003840:CDS 40.0%
AGCTTAAGAACCTTAGGCTT+CGG + chr7_1:922675-922694 Msa1003840:intron 40.0%
AGGTGTATGTTTGGATTGAC+AGG - chr7_1:922748-922767 None:intergenic 40.0%
! GACTTTGGTTCCTAAATGTG+TGG - chr7_1:923116-923135 None:intergenic 40.0%
TCTTCTGGATCTTCACTTGT+TGG + chr7_1:923328-923347 Msa1003840:CDS 40.0%
CAATATTGCATCTGCTGCAT+TGG + chr7_1:923462-923481 Msa1003840:CDS 40.0%
CATCCAAAACCTAACAGAAG+TGG + chr7_1:923544-923563 Msa1003840:CDS 40.0%
ACTAAACCAAACCATGGACA+AGG + chr7_1:923609-923628 Msa1003840:CDS 40.0%
TAAACCGAACCAAACTGTGA+TGG - chr7_1:923889-923908 None:intergenic 40.0%
CAGTCCTAATTATCAACAGC+CGG + chr7_1:923972-923991 Msa1003840:intron 40.0%
GCTGAACCGTAACAACAATT+TGG - chr7_1:924071-924090 None:intergenic 40.0%
TTGGTATGTAGTATTGTGCC+AGG + chr7_1:924180-924199 Msa1003840:intron 40.0%
GCTGAGTTTCTCTGACATTA+AGG + chr7_1:924272-924291 Msa1003840:intron 40.0%
!! AGAAAGGTACCAAGCAGAAA+TGG + chr7_1:924323-924342 Msa1003840:CDS 40.0%
GATAATCCTCCATTTCTGCT+TGG - chr7_1:924335-924354 None:intergenic 40.0%
ATCAACATGGATGCTTCTTC+CGG + chr7_1:924519-924538 Msa1003840:CDS 40.0%
TGATTCAGACAAGGCAACTA+AGG + chr7_1:924572-924591 Msa1003840:CDS 40.0%
TGAAGTTCTTAGCCATTGTG+AGG + chr7_1:924605-924624 Msa1003840:CDS 40.0%
GAAGTTCTTAGCCATTGTGA+GGG + chr7_1:924606-924625 Msa1003840:CDS 40.0%
GGAGAAGCTTCATGCTTCTA+TGG + chr7_1:920940-920959 Msa1003840:CDS 45.0%
TTCAGGGTTCCCATTATTGG+AGG + chr7_1:921158-921177 Msa1003840:intron 45.0%
ATTGAAGTGACTTCTCGTGG+AGG + chr7_1:921209-921228 Msa1003840:CDS 45.0%
TTGAAGTGACTTCTCGTGGA+GGG + chr7_1:921210-921229 Msa1003840:CDS 45.0%
! TCCAGCCGAAAGCTTTAACT+TGG + chr7_1:921413-921432 Msa1003840:intron 45.0%
TCCAAGTTAAAGCTTTCGGC+TGG - chr7_1:921417-921436 None:intergenic 45.0%
! GAAGATTGGCCCAACTAGTA+AGG + chr7_1:921891-921910 Msa1003840:intron 45.0%
TTGAGTCATATGCCCTGCAA+AGG + chr7_1:921916-921935 Msa1003840:intron 45.0%
GAAATACTGAACGCCGACAA+AGG - chr7_1:921999-922018 None:intergenic 45.0%
CTAGAGACTCATCAGGGTTA+GGG - chr7_1:922040-922059 None:intergenic 45.0%
CTGAATCCTAGAGACTCATC+AGG - chr7_1:922047-922066 None:intergenic 45.0%
!! GAAGCATTGGTTGCTGTTGA+TGG - chr7_1:922260-922279 None:intergenic 45.0%
! TCTGAGCACAAAGGAAGCAT+TGG - chr7_1:922273-922292 None:intergenic 45.0%
TGCACAAACCAGAAGATGCA+GGG - chr7_1:922361-922380 None:intergenic 45.0%
ATGCACAAACCAGAAGATGC+AGG - chr7_1:922362-922381 None:intergenic 45.0%
! CAATTTTTGCAGCCTTCTCC+AGG + chr7_1:922511-922530 Msa1003840:CDS 45.0%
! CAGTCGACTTTCAGAAGTCA+GGG + chr7_1:922542-922561 Msa1003840:CDS 45.0%
! AGTCGACTTTCAGAAGTCAG+GGG + chr7_1:922543-922562 Msa1003840:CDS 45.0%
GAGCTTAAGAAGTGACCTTG+AGG - chr7_1:922586-922605 None:intergenic 45.0%
CATGATTTAGCCGAAGCCTA+AGG - chr7_1:922688-922707 None:intergenic 45.0%
CTTAGGCTTCGGCTAAATCA+TGG + chr7_1:922686-922705 Msa1003840:intron 45.0%
! GCATCATGACTTTGTTGTGG+TGG + chr7_1:922711-922730 Msa1003840:intron 45.0%
ATCCTTGAATGTGCCAAGTG+TGG + chr7_1:922875-922894 Msa1003840:intron 45.0%
TGGACAATAGAGACCACACT+TGG - chr7_1:922891-922910 None:intergenic 45.0%
TGAAACCGACCCACACATTT+AGG + chr7_1:923103-923122 Msa1003840:intron 45.0%
TGGTTCCTAAATGTGTGGGT+CGG - chr7_1:923111-923130 None:intergenic 45.0%
GTTGGAGTAAGCAGTGACTT+TGG - chr7_1:923131-923150 None:intergenic 45.0%
TGTTCTGCAGTGTCTTCTTC+TGG + chr7_1:923313-923332 Msa1003840:intron 45.0%
GTAGGTTCAGAGACACTCAA+AGG + chr7_1:923397-923416 Msa1003840:CDS 45.0%
!!! CTGTTAGGTTTTGGATGTGC+AGG - chr7_1:923541-923560 None:intergenic 45.0%
CGAACCGAACTAAACCAGTT+TGG + chr7_1:923846-923865 Msa1003840:intron 45.0%
GTGAACTGTCCATCACAGTT+TGG + chr7_1:923877-923896 Msa1003840:intron 45.0%
CTGTCCATCACAGTTTGGTT+CGG + chr7_1:923882-923901 Msa1003840:intron 45.0%
! GAACCAAACCGTCATTGGTT+TGG - chr7_1:924036-924055 None:intergenic 45.0%
! TTGTTGTTACGGTTCAGCTC+AGG + chr7_1:924073-924092 Msa1003840:intron 45.0%
CATGACTAGGAACCGAAGTA+TGG - chr7_1:924242-924261 None:intergenic 45.0%
! AAGGTACCAAGCAGAAATGG+AGG + chr7_1:924326-924345 Msa1003840:CDS 45.0%
ACCAAAGCTGAATCTCCTTC+CGG - chr7_1:924417-924436 None:intergenic 45.0%
TTCAGACAAGGCAACTAAGG+AGG + chr7_1:924575-924594 Msa1003840:CDS 45.0%
TCAGACAAGGCAACTAAGGA+GGG + chr7_1:924576-924595 Msa1003840:CDS 45.0%
CATTCACTTCTCCCTCACAA+TGG - chr7_1:924620-924639 None:intergenic 45.0%
TTCTCGTGGAGGGATTGAGA+AGG + chr7_1:921220-921239 Msa1003840:CDS 50.0%
GTTGAACTCACGCCTTTGCA+GGG - chr7_1:921931-921950 None:intergenic 50.0%
AGTTGAACTCACGCCTTTGC+AGG - chr7_1:921932-921951 None:intergenic 50.0%
CCTAGAGACTCATCAGGGTT+AGG - chr7_1:922041-922060 None:intergenic 50.0%
CCTAACCCTGATGAGTCTCT+AGG + chr7_1:922038-922057 Msa1003840:intron 50.0%
GCACAAACCAGAAGATGCAG+GGG - chr7_1:922360-922379 None:intergenic 50.0%
ACTGGATGTGTTCCTGGAGA+AGG - chr7_1:922526-922545 None:intergenic 50.0%
AAGTCGACTGGATGTGTTCC+TGG - chr7_1:922532-922551 None:intergenic 50.0%
! CCTGACTTCTGAAAGTCGAC+TGG - chr7_1:922544-922563 None:intergenic 50.0%
! CCAGTCGACTTTCAGAAGTC+AGG + chr7_1:922541-922560 Msa1003840:CDS 50.0%
AGGCTTCGGCTAAATCATGG+CGG + chr7_1:922689-922708 Msa1003840:intron 50.0%
GCGGCATCATGACTTTGTTG+TGG + chr7_1:922708-922727 Msa1003840:intron 50.0%
GACCACACTTGGCACATTCA+AGG - chr7_1:922880-922899 None:intergenic 50.0%
! GTGTGGGTCGGTTTCACAAT+AGG - chr7_1:923099-923118 None:intergenic 50.0%
!! CGCACCGGCTGTTGATAATT+AGG - chr7_1:923979-923998 None:intergenic 50.0%
GAATCGGGCCAAACCAATGA+CGG + chr7_1:924025-924044 Msa1003840:intron 50.0%
CTATGAGGCACACAAACACC+TGG - chr7_1:924201-924220 None:intergenic 50.0%
CAGGTGTTTGTGTGCCTCAT+AGG + chr7_1:924199-924218 Msa1003840:intron 50.0%
! GAGCATTGTAACCGACTACG+CGG + chr7_1:924371-924390 Msa1003840:CDS 50.0%
AGCATTGTAACCGACTACGC+GGG + chr7_1:924372-924391 Msa1003840:CDS 50.0%
TCCGGAAGGAGATTCAGCTT+TGG + chr7_1:924413-924432 Msa1003840:CDS 50.0%
! GGAAGGAGATTCAGCTTTGG+TGG + chr7_1:924416-924435 Msa1003840:CDS 50.0%
CGATTCTTGTCAGACTCCTG+AGG + chr7_1:924458-924477 Msa1003840:CDS 50.0%
ACTCCTGAGGAGAGTAGTTC+TGG + chr7_1:924471-924490 Msa1003840:CDS 50.0%
TCACCAGAACTACTCTCCTC+AGG - chr7_1:924477-924496 None:intergenic 50.0%
AACATGGATGCTTCTTCCGG+TGG + chr7_1:924522-924541 Msa1003840:CDS 50.0%
AGAATCCACTCTTGCTCCAC+CGG - chr7_1:924541-924560 None:intergenic 50.0%
TGTGAGGGAGAAGTGAATGC+TGG + chr7_1:924621-924640 Msa1003840:CDS 50.0%
AGACTCATCAGGGTTAGGGC+AGG - chr7_1:922036-922055 None:intergenic 55.0%
CTGACTTCTTCCTCCTCCGA+CGG - chr7_1:923501-923520 None:intergenic 55.0%
GGGCCAAACCAATGACGGTT+TGG + chr7_1:924030-924049 Msa1003840:intron 55.0%
GCATTGTAACCGACTACGCG+GGG + chr7_1:924373-924392 Msa1003840:CDS 55.0%
GCCACTGCAACAACGGTTTC+CGG + chr7_1:924395-924414 Msa1003840:CDS 55.0%
TCCGGAAACCGTTGTTGCAG+TGG - chr7_1:924399-924418 None:intergenic 55.0%
CTGCAACAACGGTTTCCGGA+AGG + chr7_1:924399-924418 Msa1003840:CDS 55.0%
TTCTTCCGGTGGAGCAAGAG+TGG + chr7_1:924533-924552 Msa1003840:CDS 55.0%
GAGGGAGAAGTGAATGCTGG+CGG + chr7_1:924624-924643 Msa1003840:CDS 55.0%
AGATGCAGGGGTCCACCGTT+TGG - chr7_1:922348-922367 None:intergenic 60.0%
ACTTCTTCCTCCTCCGACGG+CGG - chr7_1:923498-923517 None:intergenic 60.0%
CGGTGGACCCCTGCATCTTC+TGG + chr7_1:922350-922369 Msa1003840:CDS 65.0%
TTGCAGTGGCCCCGCGTAGT+CGG - chr7_1:924385-924404 None:intergenic 65.0%
ACGCGGGGCCACTGCAACAA+CGG + chr7_1:924388-924407 Msa1003840:CDS 65.0%
TGGGCGTCCAACGCCGCCGT+CGG + chr7_1:923482-923501 Msa1003840:CDS 75.0%
TCCAACGCCGCCGTCGGAGG+AGG + chr7_1:923488-923507 Msa1003840:CDS 75.0%
TCCTCCTCCGACGGCGGCGT+TGG - chr7_1:923492-923511 None:intergenic 75.0%
! GCGTCCAACGCCGCCGTCGG+AGG + chr7_1:923485-923504 Msa1003840:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 920319 924701 920319 ID=Msa1003840;Name=Msa1003840
chr7_1 mRNA 920319 924701 920319 ID=Msa1003840-mRNA-1;Parent=Msa1003840;Name=Msa1003840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=126|0.83|0.57|1|0.83|0.71|7|0|437
chr7_1 exon 920319 920427 920319 ID=Msa1003840-mRNA-1:exon:384;Parent=Msa1003840-mRNA-1
chr7_1 exon 920786 920975 920786 ID=Msa1003840-mRNA-1:exon:385;Parent=Msa1003840-mRNA-1
chr7_1 exon 921163 921241 921163 ID=Msa1003840-mRNA-1:exon:386;Parent=Msa1003840-mRNA-1
chr7_1 exon 922209 922371 922209 ID=Msa1003840-mRNA-1:exon:387;Parent=Msa1003840-mRNA-1
chr7_1 exon 922464 922589 922464 ID=Msa1003840-mRNA-1:exon:388;Parent=Msa1003840-mRNA-1
chr7_1 exon 923323 923687 923323 ID=Msa1003840-mRNA-1:exon:389;Parent=Msa1003840-mRNA-1
chr7_1 exon 924294 924701 924294 ID=Msa1003840-mRNA-1:exon:390;Parent=Msa1003840-mRNA-1
chr7_1 five_prime_UTR 920319 920427 920319 ID=Msa1003840-mRNA-1:five_prime_utr;Parent=Msa1003840-mRNA-1
chr7_1 five_prime_UTR 920786 920802 920786 ID=Msa1003840-mRNA-1:five_prime_utr;Parent=Msa1003840-mRNA-1
chr7_1 CDS 920803 920975 920803 ID=Msa1003840-mRNA-1:cds;Parent=Msa1003840-mRNA-1
chr7_1 CDS 921163 921241 921163 ID=Msa1003840-mRNA-1:cds;Parent=Msa1003840-mRNA-1
chr7_1 CDS 922209 922371 922209 ID=Msa1003840-mRNA-1:cds;Parent=Msa1003840-mRNA-1
chr7_1 CDS 922464 922589 922464 ID=Msa1003840-mRNA-1:cds;Parent=Msa1003840-mRNA-1
chr7_1 CDS 923323 923687 923323 ID=Msa1003840-mRNA-1:cds;Parent=Msa1003840-mRNA-1
chr7_1 CDS 924294 924701 924294 ID=Msa1003840-mRNA-1:cds;Parent=Msa1003840-mRNA-1
Gene Sequence

>Msa1003840

ATGGCATCAACATCATGTTTTTTCAACAACAATGATTTCCCTATGAAAGTGGTAGCTCCTATGTCTCATTCATATCCTGAACCTCTTGCAAAATATGATGATGTTGTGGCAAATCCCAAGCTCTTTATGCTTACATTGGAGAAGCTTCATGCTTCTATGGGTACTAAGTTCATGGTTCCCATTATTGGAGGAAAAGAACTAGATTTGTGTCGACTCTTCATTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAAGAAGTAACTGCAGCTTTCAGTTTTCCATCAACAGCAACCAATGCTTCCTTTGTGCTCAGAAAATACTATTCTTCATTGCTTTATCACTATGAGCAAATCTACTATTTTAGATCCAAACGGTGGACCCCTGCATCTTCTGATGCTTTGCAGAATCAATCAACCATGTCTGTTCCAGCTTCAATAACGCAATTTTTGCAGCCTTCTCCAGGAACACATCCAGTCGACTTTCAGAAGTCAGGGGTTAATGCTTCTGAATTGCCTCAAGTGTCTTCTTCTGGATCTTCACTTGTTGGAGTTATTGATGGAAAGTTTGAAAGTGGATATCTAGTTTCAGTTTCAGTAGGTTCAGAGACACTCAAAGGTGTACTATATGAGTCTCCACAAAGCATTAAAATTAATAATAACAATATTGCATCTGCTGCATTGGGCGTCCAACGCCGCCGTCGGAGGAGGAAGAAGTCAGAAATAAAAAGGAGAGATCCTGCACATCCAAAACCTAACAGAAGTGGTTACAATTTCTTCTTTGCTGAACAACATGCAAGACTAAAGCTACTAAACCAAACCATGGACAAGGATATTAGTAGAATGATTGGTGAACTTTGGAACAACTTAAAAGAGTCTGAGAAAACAGTTTATCAAGAAAAGGCTATTAAGGATAAAGAAAGGTACCAAGCAGAAATGGAGGATTATCGCGATAAAATGAAGACGAGCATTGTAACCGACTACGCGGGGCCACTGCAACAACGGTTTCCGGAAGGAGATTCAGCTTTGGTGGACATTGACATAAAAATGCACGATTCTTGTCAGACTCCTGAGGAGAGTAGTTCTGGTGAAAGTGACTATGTTGCAGATGATATCAACATGGATGCTTCTTCCGGTGGAGCAAGAGTGGATTCTGAAGCTTTTGTTGATTCAGACAAGGCAACTAAGGAGGGAGTTATTGAAGTTCTTAGCCATTGTGAGGGAGAAGTGAATGCTGGCGGAATTCAACAGACTCAAAAGATGAATGAGAGCCAAAACATGTTATCCTTACTTTAG

Protein sequence

>Msa1003840

MASTSCFFNNNDFPMKVVAPMSHSYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMVPIIGGKELDLCRLFIEVTSRGGIEKLMKERRWKEVTAAFSFPSTATNASFVLRKYYSSLLYHYEQIYYFRSKRWTPASSDALQNQSTMSVPASITQFLQPSPGTHPVDFQKSGVNASELPQVSSSGSSLVGVIDGKFESGYLVSVSVGSETLKGVLYESPQSIKINNNNIASAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDYAGPLQQRFPEGDSALVDIDIKMHDSCQTPEESSSGESDYVADDINMDASSGGARVDSEAFVDSDKATKEGVIEVLSHCEGEVNAGGIQQTQKMNESQNMLSLL*