Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006770 | XP_003621170.1 | 96.324 | 272 | 10 | 0 | 1 | 272 | 1 | 272 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006770 | sp|Q8LAT0|ATB20_ARATH | 44.803 | 279 | 127 | 12 | 1 | 272 | 16 | 274 | 8.72e-64 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006770 | G7KZX6 | 96.324 | 272 | 10 | 0 | 1 | 272 | 1 | 272 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1006770 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006770 | MtrunA17_Chr7g0217111 | 96.324 | 272 | 10 | 0 | 1 | 272 | 1 | 272 | 0.0 | 543 |
| Msa1006770 | MtrunA17_Chr6g0453021 | 61.168 | 291 | 72 | 10 | 1 | 272 | 1 | 269 | 1.35e-108 | 315 |
| Msa1006770 | MtrunA17_Chr8g0362151 | 51.761 | 284 | 115 | 9 | 1 | 271 | 1 | 275 | 2.76e-77 | 236 |
| Msa1006770 | MtrunA17_Chr5g0416391 | 49.291 | 282 | 123 | 8 | 1 | 271 | 4 | 276 | 8.96e-69 | 214 |
| Msa1006770 | MtrunA17_Chr5g0415941 | 59.459 | 111 | 43 | 1 | 65 | 175 | 74 | 182 | 3.50e-33 | 123 |
| Msa1006770 | MtrunA17_Chr3g0119291 | 50.360 | 139 | 57 | 3 | 71 | 197 | 47 | 185 | 3.69e-33 | 121 |
| Msa1006770 | MtrunA17_Chr4g0060031 | 49.630 | 135 | 60 | 2 | 48 | 175 | 57 | 190 | 6.89e-32 | 120 |
| Msa1006770 | MtrunA17_Chr6g0450991 | 58.416 | 101 | 41 | 1 | 75 | 175 | 63 | 162 | 1.82e-30 | 115 |
| Msa1006770 | MtrunA17_Chr3g0123691 | 59.794 | 97 | 39 | 0 | 79 | 175 | 59 | 155 | 3.19e-30 | 115 |
| Msa1006770 | MtrunA17_Chr8g0381741 | 57.732 | 97 | 41 | 0 | 79 | 175 | 53 | 149 | 3.58e-29 | 112 |
| Msa1006770 | MtrunA17_Chr7g0265521 | 49.254 | 134 | 56 | 3 | 67 | 196 | 51 | 176 | 1.13e-28 | 109 |
| Msa1006770 | MtrunA17_Chr8g0362751 | 58.333 | 96 | 40 | 0 | 80 | 175 | 89 | 184 | 6.75e-27 | 105 |
| Msa1006770 | MtrunA17_Chr1g0179581 | 58.537 | 82 | 34 | 0 | 78 | 159 | 26 | 107 | 7.81e-25 | 95.5 |
| Msa1006770 | MtrunA17_Chr4g0055851 | 39.241 | 158 | 87 | 2 | 16 | 173 | 61 | 209 | 3.23e-24 | 98.6 |
| Msa1006770 | MtrunA17_Chr3g0127511 | 44.355 | 124 | 60 | 3 | 83 | 200 | 41 | 161 | 6.10e-22 | 91.7 |
| Msa1006770 | MtrunA17_Chr8g0346251 | 51.163 | 86 | 35 | 1 | 87 | 165 | 48 | 133 | 6.70e-21 | 89.0 |
| Msa1006770 | MtrunA17_Chr5g0399491 | 41.406 | 128 | 65 | 2 | 49 | 167 | 97 | 223 | 1.71e-20 | 88.6 |
| Msa1006770 | MtrunA17_Chr7g0258831 | 40.157 | 127 | 69 | 1 | 48 | 174 | 128 | 247 | 4.14e-20 | 87.8 |
| Msa1006770 | MtrunA17_Chr1g0175651 | 45.714 | 105 | 50 | 1 | 70 | 174 | 144 | 241 | 8.90e-20 | 86.7 |
| Msa1006770 | MtrunA17_Chr1g0151971 | 48.958 | 96 | 42 | 1 | 79 | 174 | 129 | 217 | 2.77e-19 | 85.1 |
| Msa1006770 | MtrunA17_Chr4g0054421 | 44.860 | 107 | 51 | 2 | 68 | 174 | 116 | 214 | 4.22e-19 | 84.3 |
| Msa1006770 | MtrunA17_Chr5g0400781 | 45.192 | 104 | 50 | 1 | 71 | 174 | 114 | 210 | 4.46e-19 | 84.3 |
| Msa1006770 | MtrunA17_Chr8g0335131 | 49.474 | 95 | 44 | 1 | 79 | 173 | 145 | 235 | 9.32e-19 | 84.0 |
| Msa1006770 | MtrunA17_Chr2g0308611 | 44.954 | 109 | 56 | 2 | 68 | 176 | 188 | 292 | 2.14e-18 | 83.6 |
| Msa1006770 | MtrunA17_Chr4g0071411 | 47.674 | 86 | 45 | 0 | 82 | 167 | 90 | 175 | 4.04e-18 | 80.9 |
| Msa1006770 | MtrunA17_Chr4g0044091 | 44.944 | 89 | 49 | 0 | 79 | 167 | 64 | 152 | 1.12e-16 | 76.3 |
| Msa1006770 | MtrunA17_Chr5g0403701 | 48.889 | 90 | 46 | 0 | 80 | 169 | 53 | 142 | 7.09e-16 | 74.3 |
| Msa1006770 | MtrunA17_Chr5g0403691 | 54.167 | 72 | 33 | 0 | 80 | 151 | 53 | 124 | 8.19e-15 | 71.6 |
| Msa1006770 | MtrunA17_Chr3g0135331 | 32.298 | 161 | 93 | 3 | 59 | 205 | 120 | 278 | 2.93e-14 | 71.2 |
| Msa1006770 | MtrunA17_Chr2g0299031 | 43.299 | 97 | 51 | 1 | 77 | 173 | 79 | 171 | 1.15e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006770 | AT3G01220.1 | 44.803 | 279 | 127 | 12 | 1 | 272 | 16 | 274 | 8.87e-65 | 204 |
| Msa1006770 | AT5G15150.1 | 45.734 | 293 | 123 | 12 | 1 | 271 | 22 | 300 | 2.51e-62 | 199 |
| Msa1006770 | AT1G69780.1 | 44.599 | 287 | 128 | 11 | 6 | 271 | 11 | 287 | 1.17e-60 | 194 |
| Msa1006770 | AT1G26960.1 | 45.455 | 242 | 108 | 9 | 33 | 271 | 28 | 248 | 1.78e-54 | 177 |
| Msa1006770 | AT5G65310.1 | 44.910 | 167 | 82 | 3 | 22 | 180 | 8 | 172 | 1.13e-32 | 122 |
| Msa1006770 | AT5G65310.2 | 49.265 | 136 | 64 | 1 | 50 | 180 | 19 | 154 | 1.31e-32 | 121 |
| Msa1006770 | AT2G22430.1 | 57.732 | 97 | 41 | 0 | 79 | 175 | 61 | 157 | 8.83e-31 | 117 |
| Msa1006770 | AT4G40060.1 | 56.701 | 97 | 42 | 0 | 79 | 175 | 58 | 154 | 1.27e-30 | 116 |
| Msa1006770 | AT3G01470.1 | 56.701 | 97 | 42 | 0 | 79 | 175 | 67 | 163 | 6.78e-30 | 114 |
| Msa1006770 | AT2G46680.1 | 50.549 | 91 | 45 | 0 | 83 | 173 | 35 | 125 | 5.85e-24 | 97.8 |
| Msa1006770 | AT1G27045.1 | 38.000 | 150 | 80 | 2 | 28 | 175 | 25 | 163 | 5.35e-23 | 94.4 |
| Msa1006770 | AT5G03790.1 | 48.598 | 107 | 53 | 1 | 80 | 184 | 77 | 183 | 1.15e-22 | 94.0 |
| Msa1006770 | AT1G27045.4 | 40.323 | 124 | 74 | 0 | 49 | 172 | 37 | 160 | 2.68e-22 | 93.2 |
| Msa1006770 | AT1G27045.5 | 44.545 | 110 | 61 | 0 | 66 | 175 | 11 | 120 | 4.91e-22 | 90.9 |
| Msa1006770 | AT1G27045.3 | 44.545 | 110 | 61 | 0 | 66 | 175 | 11 | 120 | 4.91e-22 | 90.9 |
| Msa1006770 | AT1G27045.2 | 44.545 | 110 | 61 | 0 | 66 | 175 | 3 | 112 | 5.32e-22 | 90.5 |
| Msa1006770 | AT3G61890.1 | 48.889 | 90 | 46 | 0 | 83 | 172 | 33 | 122 | 5.48e-22 | 92.0 |
| Msa1006770 | AT2G46680.2 | 48.837 | 86 | 44 | 0 | 83 | 168 | 35 | 120 | 1.49e-21 | 91.3 |
| Msa1006770 | AT5G03790.2 | 49.485 | 97 | 47 | 1 | 80 | 176 | 77 | 171 | 3.39e-21 | 89.0 |
| Msa1006770 | AT4G17460.1 | 44.348 | 115 | 60 | 1 | 59 | 173 | 114 | 224 | 1.75e-20 | 89.0 |
| Msa1006770 | AT2G36610.1 | 45.946 | 111 | 45 | 2 | 72 | 174 | 63 | 166 | 3.75e-20 | 85.9 |
| Msa1006770 | AT2G18550.1 | 33.871 | 186 | 96 | 5 | 15 | 195 | 7 | 170 | 1.41e-19 | 85.1 |
| Msa1006770 | AT5G47370.1 | 39.706 | 136 | 69 | 4 | 45 | 173 | 90 | 219 | 1.97e-19 | 85.9 |
| Msa1006770 | AT3G60390.1 | 45.536 | 112 | 52 | 3 | 65 | 173 | 146 | 251 | 6.15e-19 | 85.1 |
| Msa1006770 | AT4G16780.1 | 44.545 | 110 | 57 | 1 | 64 | 173 | 113 | 218 | 8.77e-19 | 84.3 |
| Msa1006770 | AT5G53980.1 | 47.872 | 94 | 49 | 0 | 77 | 170 | 8 | 101 | 1.18e-18 | 80.9 |
| Msa1006770 | AT2G01430.1 | 45.098 | 102 | 56 | 0 | 66 | 167 | 125 | 226 | 1.53e-18 | 83.6 |
| Msa1006770 | AT5G06710.1 | 47.917 | 96 | 46 | 1 | 79 | 174 | 189 | 280 | 3.63e-18 | 83.2 |
| Msa1006770 | AT4G37790.1 | 45.192 | 104 | 50 | 1 | 71 | 174 | 117 | 213 | 6.24e-18 | 81.6 |
| Msa1006770 | AT2G22800.1 | 42.241 | 116 | 51 | 3 | 59 | 174 | 101 | 200 | 2.73e-17 | 80.1 |
| Msa1006770 | AT2G44910.1 | 46.316 | 95 | 47 | 1 | 79 | 173 | 162 | 252 | 8.30e-17 | 79.3 |
| Msa1006770 | AT4G36740.1 | 42.991 | 107 | 56 | 1 | 80 | 181 | 55 | 161 | 9.46e-17 | 77.4 |
| Msa1006770 | AT4G36740.2 | 42.991 | 107 | 56 | 1 | 80 | 181 | 56 | 162 | 1.13e-16 | 77.0 |
| Msa1006770 | AT1G70920.1 | 41.346 | 104 | 59 | 1 | 64 | 167 | 55 | 156 | 8.60e-16 | 74.3 |
| Msa1006770 | AT1G70920.2 | 41.346 | 104 | 59 | 1 | 64 | 167 | 25 | 126 | 9.68e-16 | 73.6 |
| Msa1006770 | AT5G66700.1 | 48.750 | 80 | 38 | 1 | 66 | 145 | 60 | 136 | 1.20e-14 | 71.6 |
| Msa1006770 | AT5G06710.4 | 54.717 | 53 | 24 | 0 | 79 | 131 | 189 | 241 | 1.48e-11 | 63.5 |
| Msa1006770 | AT2G01430.2 | 48.485 | 66 | 34 | 0 | 66 | 131 | 125 | 190 | 2.25e-11 | 62.4 |
| Msa1006770 | AT1G79840.1 | 33.333 | 117 | 57 | 1 | 79 | 174 | 103 | 219 | 6.70e-11 | 62.8 |
| Msa1006770 | AT1G79840.5 | 33.333 | 117 | 57 | 1 | 79 | 174 | 103 | 219 | 6.87e-11 | 62.8 |
| Msa1006770 | AT1G79840.2 | 33.333 | 117 | 57 | 1 | 79 | 174 | 132 | 248 | 7.29e-11 | 62.8 |
| Msa1006770 | AT1G79840.3 | 33.333 | 117 | 57 | 1 | 79 | 174 | 45 | 161 | 7.57e-11 | 62.8 |
| Msa1006770 | AT1G79840.6 | 33.333 | 117 | 57 | 1 | 79 | 174 | 45 | 161 | 7.57e-11 | 62.8 |
| Msa1006770 | AT1G79840.4 | 33.333 | 117 | 57 | 1 | 79 | 174 | 103 | 219 | 8.11e-11 | 62.8 |
Find 66 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGCCTTGTTAATGATTT+TGG | 0.074662 | 7_1:-5583556 | Msa1006770:three_prime_UTR |
| CTTGAGAAGAGCTTTGAATT+TGG | 0.186029 | 7_1:-5585628 | Msa1006770:CDS |
| GTGCAACTTGCCAAGGCTTT+AGG | 0.221018 | 7_1:-5585580 | Msa1006770:CDS |
| GAAGAAGATCAGGCTGAATT+TGG | 0.249178 | 7_1:-5585665 | Msa1006770:CDS |
| AGAAGTTGGGGTATGTTGTT+AGG | 0.260017 | 7_1:+5583686 | None:intergenic |
| TGCAACTTGCCAAGGCTTTA+GGG | 0.282913 | 7_1:-5585579 | Msa1006770:CDS |
| AAGTTGGTAGAAGGCTAATT+AGG | 0.295400 | 7_1:+5583717 | None:intergenic |
| TTGAGAAGAGCTTTGAATTT+GGG | 0.313267 | 7_1:-5585627 | Msa1006770:CDS |
| AGCCAAGACAAATTGCTATA+TGG | 0.335864 | 7_1:-5585552 | Msa1006770:CDS |
| TTTGGATATAATCGATCAAT+TGG | 0.372971 | 7_1:-5583538 | Msa1006770:three_prime_UTR |
| CACATCACTAGCATTCAATA+TGG | 0.378757 | 7_1:-5586356 | Msa1006770:exon |
| TGAAAGAAACTGAGGGTTCA+TGG | 0.388104 | 7_1:-5583832 | Msa1006770:CDS |
| AGCATCAGAACCTCTGGCCT+TGG | 0.392592 | 7_1:-5583598 | Msa1006770:CDS |
| GGTTTAATGAAGTTGGTAGA+AGG | 0.399111 | 7_1:+5583708 | None:intergenic |
| TGATGTGAATTGAAGAAGTT+GGG | 0.408685 | 7_1:+5583673 | None:intergenic |
| GTGGAGAGAAGAAGAAGATC+AGG | 0.413666 | 7_1:-5585675 | Msa1006770:CDS |
| AATATATATTCAGAGGGGTT+TGG | 0.416697 | 7_1:+5586474 | None:intergenic |
| TTGTTAGGGTTTAATGAAGT+TGG | 0.422091 | 7_1:+5583701 | None:intergenic |
| GAAGTTGGGGTATGTTGTTA+GGG | 0.425644 | 7_1:+5583687 | None:intergenic |
| TCTTCTTCTTCTCTCCACTT+TGG | 0.431006 | 7_1:+5585680 | None:intergenic |
| TGTGATAAATTCATGCAAAT+TGG | 0.443285 | 7_1:+5586375 | None:intergenic |
| CGCTGCAAACCTTAATATTG+TGG | 0.465621 | 7_1:-5583493 | Msa1006770:three_prime_UTR |
| TTGATGTGAATTGAAGAAGT+TGG | 0.471685 | 7_1:+5583672 | None:intergenic |
| GATGATGATTTATCTGATGA+TGG | 0.471832 | 7_1:-5585706 | Msa1006770:CDS |
| AAGTGTTGAGGTGGAAAAGA+AGG | 0.489869 | 7_1:+5586253 | None:intergenic |
| TGTCATGGTGACAAAAGTAT+TGG | 0.490814 | 7_1:+5586504 | None:intergenic |
| AACCATATAGCAATTTGTCT+TGG | 0.491054 | 7_1:+5585550 | None:intergenic |
| AACATGAAACTATGAGGTGG+TGG | 0.502381 | 7_1:+5586328 | None:intergenic |
| TTGATGAGCATCAGAACCTC+TGG | 0.507447 | 7_1:-5583604 | Msa1006770:CDS |
| AGTGTTGAGGTGGAAAAGAA+GGG | 0.508674 | 7_1:+5586254 | None:intergenic |
| CAAATTCAAAGCTCTTCTCA+AGG | 0.519428 | 7_1:+5585629 | None:intergenic |
| AGTTCTATTTCTTCACAGAA+TGG | 0.521830 | 7_1:-5583746 | Msa1006770:CDS |
| GAAGAAATTTGAAGCTGTCA+AGG | 0.526329 | 7_1:-5585467 | Msa1006770:CDS |
| CAGCTTCAAATTTCTTCTTG+AGG | 0.527423 | 7_1:+5585473 | None:intergenic |
| AAAAGCAAGGATTGGTGTGA+AGG | 0.539700 | 7_1:-5583872 | Msa1006770:CDS |
| CCACCTCAACACTTTCAACA+AGG | 0.552469 | 7_1:-5586244 | Msa1006770:intron |
| AAGAAAAGTGCAACTTGCCA+AGG | 0.554173 | 7_1:-5585587 | Msa1006770:CDS |
| CCTTGTTGAAAGTGTTGAGG+TGG | 0.554667 | 7_1:+5586244 | None:intergenic |
| TGGCTGCAACCCTAAAGCCT+TGG | 0.556976 | 7_1:+5585570 | None:intergenic |
| AAATTCAAAGCTCTTCTCAA+GGG | 0.565025 | 7_1:+5585630 | None:intergenic |
| AAGGTGTTAAGAGAAGTTGA+AGG | 0.567749 | 7_1:+5586277 | None:intergenic |
| TTGAGGTGGAAAAGAAGGGA+AGG | 0.568416 | 7_1:+5586258 | None:intergenic |
| AGCAAGGATTGGTGTGAAGG+TGG | 0.575668 | 7_1:-5583869 | Msa1006770:CDS |
| TTTAGATCTCTCAAGAACAC+AGG | 0.581192 | 7_1:-5583777 | Msa1006770:CDS |
| ATGATATAATATATATTCAG+AGG | 0.582448 | 7_1:+5586467 | None:intergenic |
| GGGTTTGGCACTCACTGTCA+TGG | 0.584437 | 7_1:+5586489 | None:intergenic |
| TGGTGACAAAAGTATTGGAA+AGG | 0.585984 | 7_1:+5586509 | None:intergenic |
| AGGTGTTAAGAGAAGTTGAA+GGG | 0.587354 | 7_1:+5586278 | None:intergenic |
| TGATATAATATATATTCAGA+GGG | 0.597047 | 7_1:+5586468 | None:intergenic |
| ACATGAAACTATGAGGTGGT+GGG | 0.601396 | 7_1:+5586329 | None:intergenic |
| ATGCATAATGAAAGAAACTG+AGG | 0.602715 | 7_1:-5583840 | Msa1006770:CDS |
| ACTGAGGGTTCATGGAGCAA+TGG | 0.602832 | 7_1:-5583824 | Msa1006770:CDS |
| TCTGATGATGGATTCCAAAG+TGG | 0.607438 | 7_1:-5585694 | Msa1006770:CDS |
| AGTTGATCATGATCTTCATG+AGG | 0.620183 | 7_1:+5586301 | None:intergenic |
| AAATGATGCATCTATGTCCA+AGG | 0.620204 | 7_1:+5583581 | None:intergenic |
| CAATCAGAAACTACAAGCAG+AGG | 0.622643 | 7_1:-5585419 | Msa1006770:intron |
| CATGATCATCATGAAGTGCA+TGG | 0.625502 | 7_1:-5585730 | Msa1006770:CDS |
| GGGTTAAACATGAAACTATG+AGG | 0.630990 | 7_1:+5586322 | None:intergenic |
| TGACCTTGTTGAAAGTGTTG+AGG | 0.631537 | 7_1:+5586241 | None:intergenic |
| TGCATAATGAAAGAAACTGA+GGG | 0.634219 | 7_1:-5583839 | Msa1006770:CDS |
| GTTGATCATGATCTTCATGA+GGG | 0.635617 | 7_1:+5586302 | None:intergenic |
| GCATCTATGTCCAAGGCCAG+AGG | 0.638650 | 7_1:+5583588 | None:intergenic |
| TATATCCAAAATCATTAACA+AGG | 0.640496 | 7_1:+5583551 | None:intergenic |
| GATGTGAATTGAAGAAGTTG+GGG | 0.704596 | 7_1:+5583674 | None:intergenic |
| TTAAACATGAAACTATGAGG+TGG | 0.709265 | 7_1:+5586325 | None:intergenic |
| GATATAATATATATTCAGAG+GGG | 0.715673 | 7_1:+5586469 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAATAAAATAAATAT+GGG | + | chr7_1:5585274-5585293 | None:intergenic | 0.0% |
| !! | TAGTAAATTTATATTGAAAT+TGG | - | chr7_1:5585681-5585700 | Msa1006770:CDS | 10.0% |
| !! | TGATATAATATATATTCAGA+GGG | + | chr7_1:5583477-5583496 | None:intergenic | 15.0% |
| !! | ATGATATAATATATATTCAG+AGG | + | chr7_1:5583478-5583497 | None:intergenic | 15.0% |
| !! | TATCTCTTTATATCATAAAA+AGG | - | chr7_1:5583742-5583761 | Msa1006770:CDS | 15.0% |
| !!! | ATTTAAAACAACAATAAAAC+CGG | + | chr7_1:5583771-5583790 | None:intergenic | 15.0% |
| !! | AAATTCATAGTTCTTAATTA+TGG | + | chr7_1:5584104-5584123 | None:intergenic | 15.0% |
| !! | TTATAAGTATCAAAATGTAT+TGG | - | chr7_1:5584824-5584843 | Msa1006770:intron | 15.0% |
| !! | TAAATTTATATTGAAATTGG+TGG | - | chr7_1:5585684-5585703 | Msa1006770:CDS | 15.0% |
| !!! | AACTTTTTTGATATATTTCA+AGG | - | chr7_1:5585724-5585743 | Msa1006770:CDS | 15.0% |
| !!! | ACTTTTTTGATATATTTCAA+GGG | - | chr7_1:5585725-5585744 | Msa1006770:CDS | 15.0% |
| !!! | TTTAAAATATATTCAGTGTT+TGG | - | chr7_1:5585799-5585818 | Msa1006770:intron | 15.0% |
| !! | CGACAAAATTTATAATAATT+TGG | + | chr7_1:5585885-5585904 | None:intergenic | 15.0% |
| !! | GATATAATATATATTCAGAG+GGG | + | chr7_1:5583476-5583495 | None:intergenic | 20.0% |
| !! | TTATATCATAAAAAGGTAAC+CGG | - | chr7_1:5583749-5583768 | Msa1006770:CDS | 20.0% |
| !!! | TATCAATTTAAAGCCATAAT+TGG | - | chr7_1:5584058-5584077 | Msa1006770:intron | 20.0% |
| !!! | ATTGATTTCTTCAACAAAAA+AGG | + | chr7_1:5584164-5584183 | None:intergenic | 20.0% |
| !!! | ATTAAATAAGAGAGAGTATA+AGG | + | chr7_1:5584566-5584585 | None:intergenic | 20.0% |
| !!! | TTTTACCATTTTTAGTTATG+GGG | + | chr7_1:5584868-5584887 | None:intergenic | 20.0% |
| !!! | CTTTTACCATTTTTAGTTAT+GGG | + | chr7_1:5584869-5584888 | None:intergenic | 20.0% |
| !! | CATAACTAAAAATGGTAAAA+GGG | - | chr7_1:5584868-5584887 | Msa1006770:intron | 20.0% |
| !! | TTTAAACAACAACTTGTATT+TGG | - | chr7_1:5585055-5585074 | Msa1006770:intron | 20.0% |
| !! | TTAAACAACAACTTGTATTT+GGG | - | chr7_1:5585056-5585075 | Msa1006770:intron | 20.0% |
| !! | CTCTAATTCAATTATTAGTT+AGG | - | chr7_1:5585098-5585117 | Msa1006770:intron | 20.0% |
| !! | TAAAATAAATATGGGTACAA+AGG | + | chr7_1:5585266-5585285 | None:intergenic | 20.0% |
| !! | AGTTAAAATGTGGATATTAT+TGG | + | chr7_1:5585390-5585409 | None:intergenic | 20.0% |
| !! | AAACATTAATATGATGCTAT+GGG | + | chr7_1:5585476-5585495 | None:intergenic | 20.0% |
| !! | AAAACATTAATATGATGCTA+TGG | + | chr7_1:5585477-5585496 | None:intergenic | 20.0% |
| !! | TTCAATGTAACTACATATAT+TGG | + | chr7_1:5585849-5585868 | None:intergenic | 20.0% |
| !! | AAGAATGTAACCTAATATAT+CGG | - | chr7_1:5585926-5585945 | Msa1006770:intron | 20.0% |
| !!! | TCTTTTATGTTTTAACCTAA+TGG | - | chr7_1:5586022-5586041 | Msa1006770:intron | 20.0% |
| !! | TATATCCAAAATCATTAACA+AGG | + | chr7_1:5586394-5586413 | None:intergenic | 20.0% |
| !!! | TGTATTTTTCCACAATATTA+AGG | + | chr7_1:5586461-5586480 | None:intergenic | 20.0% |
| ! | TGTGATAAATTCATGCAAAT+TGG | + | chr7_1:5583570-5583589 | None:intergenic | 25.0% |
| ! | GAGTCTAATATAAGTTTCAA+AGG | + | chr7_1:5583890-5583909 | None:intergenic | 25.0% |
| !! | ATGAAAGTATAGTCCAATTA+TGG | + | chr7_1:5584074-5584093 | None:intergenic | 25.0% |
| !!! | GAAGAAATCAATGTCATTTT+CGG | - | chr7_1:5584172-5584191 | Msa1006770:intron | 25.0% |
| !!! | AAGAAATCAATGTCATTTTC+GGG | - | chr7_1:5584173-5584192 | Msa1006770:intron | 25.0% |
| ! | ATAATCCCCATAACTAAAAA+TGG | - | chr7_1:5584860-5584879 | Msa1006770:intron | 25.0% |
| !!! | CCTTTTACCATTTTTAGTTA+TGG | + | chr7_1:5584870-5584889 | None:intergenic | 25.0% |
| ! | CCATAACTAAAAATGGTAAA+AGG | - | chr7_1:5584867-5584886 | Msa1006770:intron | 25.0% |
| ! | ACTATTACTTTGATACACAA+AGG | + | chr7_1:5584942-5584961 | None:intergenic | 25.0% |
| !! | CAAAGTAATAGTGAAGTTTT+AGG | - | chr7_1:5584950-5584969 | Msa1006770:intron | 25.0% |
| !!! | TTTTAGGAGCAATTCATAAA+GGG | - | chr7_1:5584966-5584985 | Msa1006770:intron | 25.0% |
| ! | ATGCAAAAACATATCACAAA+TGG | + | chr7_1:5585130-5585149 | None:intergenic | 25.0% |
| ! | ATGTGTTAAAGCATATTAGT+TGG | + | chr7_1:5585567-5585586 | None:intergenic | 25.0% |
| !! | TTCTATCATGTGCAAATTTT+CGG | - | chr7_1:5585640-5585659 | Msa1006770:CDS | 25.0% |
| ! | AAAATATATTCAGTGTTTGG+CGG | - | chr7_1:5585802-5585821 | Msa1006770:intron | 25.0% |
| ! | TTTGGATATAATCGATCAAT+TGG | - | chr7_1:5586404-5586423 | Msa1006770:five_prime_UTR | 25.0% |
| AATATATATTCAGAGGGGTT+TGG | + | chr7_1:5583471-5583490 | None:intergenic | 30.0% | |
| TTAAACATGAAACTATGAGG+TGG | + | chr7_1:5583620-5583639 | None:intergenic | 30.0% | |
| !!! | GTTGTTTTAAATTGCAGTTG+CGG | - | chr7_1:5583779-5583798 | Msa1006770:CDS | 30.0% |
| TGAAACTTATATTAGACTCG+TGG | - | chr7_1:5583891-5583910 | Msa1006770:intron | 30.0% | |
| TTGGACTATACTTTCATTTG+TGG | - | chr7_1:5584077-5584096 | Msa1006770:intron | 30.0% | |
| !!! | GCACTTTTTTGTTTTGTCTT+AGG | - | chr7_1:5584134-5584153 | Msa1006770:intron | 30.0% |
| GATGATGATTTATCTGATGA+TGG | - | chr7_1:5584236-5584255 | Msa1006770:intron | 30.0% | |
| AAATTCAAAGCTCTTCTCAA+GGG | + | chr7_1:5584315-5584334 | None:intergenic | 30.0% | |
| !! | TTGAGAAGAGCTTTGAATTT+GGG | - | chr7_1:5584315-5584334 | Msa1006770:intron | 30.0% |
| AACCATATAGCAATTTGTCT+TGG | + | chr7_1:5584395-5584414 | None:intergenic | 30.0% | |
| ! | ATGCACAAATTTTCTTCGAT+AGG | + | chr7_1:5584662-5584681 | None:intergenic | 30.0% |
| ! | ATTGAATATGAGAGCATGAT+AGG | - | chr7_1:5584784-5584803 | Msa1006770:intron | 30.0% |
| !!! | GTTTTAGGAGCAATTCATAA+AGG | - | chr7_1:5584965-5584984 | Msa1006770:intron | 30.0% |
| TTTAGGAGCAATTCATAAAG+GGG | - | chr7_1:5584967-5584986 | Msa1006770:intron | 30.0% | |
| TGAATCAAGATCAAGATTCA+TGG | + | chr7_1:5585023-5585042 | None:intergenic | 30.0% | |
| AGAGCTATACTATTTCATGA+TGG | + | chr7_1:5585082-5585101 | None:intergenic | 30.0% | |
| ! | GGTCACTTTATAAAGTCAAT+AGG | + | chr7_1:5585369-5585388 | None:intergenic | 30.0% |
| AAGGAGAGAAAGTTAAAATG+TGG | + | chr7_1:5585400-5585419 | None:intergenic | 30.0% | |
| TTCTCTCCTTGATTAATTGT+TGG | - | chr7_1:5585410-5585429 | Msa1006770:intron | 30.0% | |
| AAATATATTCAGTGTTTGGC+GGG | - | chr7_1:5585803-5585822 | Msa1006770:intron | 30.0% | |
| ! | ATGATGATTGAAAGCATGTT+CGG | + | chr7_1:5585963-5585982 | None:intergenic | 30.0% |
| GTTACAAGCATTAAAAAGCA+AGG | - | chr7_1:5586057-5586076 | Msa1006770:intron | 30.0% | |
| AAGCATTAAAAAGCAAGGAT+TGG | - | chr7_1:5586062-5586081 | Msa1006770:intron | 30.0% | |
| ATGCATAATGAAAGAAACTG+AGG | - | chr7_1:5586102-5586121 | Msa1006770:intron | 30.0% | |
| TGCATAATGAAAGAAACTGA+GGG | - | chr7_1:5586103-5586122 | Msa1006770:intron | 30.0% | |
| ! | AGTTCTATTTCTTCACAGAA+TGG | - | chr7_1:5586196-5586215 | Msa1006770:intron | 30.0% |
| TTGTTAGGGTTTAATGAAGT+TGG | + | chr7_1:5586244-5586263 | None:intergenic | 30.0% | |
| TGATGTGAATTGAAGAAGTT+GGG | + | chr7_1:5586272-5586291 | None:intergenic | 30.0% | |
| TTGATGTGAATTGAAGAAGT+TGG | + | chr7_1:5586273-5586292 | None:intergenic | 30.0% | |
| ! | CATAGATGCATCATTTTCAT+TGG | - | chr7_1:5586368-5586387 | Msa1006770:five_prime_UTR | 30.0% |
| !!! | ATTGGCCTTGTTAATGATTT+TGG | - | chr7_1:5586386-5586405 | Msa1006770:five_prime_UTR | 30.0% |
| ! | TGTCATGGTGACAAAAGTAT+TGG | + | chr7_1:5583441-5583460 | None:intergenic | 35.0% |
| CACATCACTAGCATTCAATA+TGG | - | chr7_1:5583586-5583605 | Msa1006770:exon | 35.0% | |
| GGGTTAAACATGAAACTATG+AGG | + | chr7_1:5583623-5583642 | None:intergenic | 35.0% | |
| GTTGATCATGATCTTCATGA+GGG | + | chr7_1:5583643-5583662 | None:intergenic | 35.0% | |
| AGTTGATCATGATCTTCATG+AGG | + | chr7_1:5583644-5583663 | None:intergenic | 35.0% | |
| AGGTGTTAAGAGAAGTTGAA+GGG | + | chr7_1:5583667-5583686 | None:intergenic | 35.0% | |
| ! | AAGGTGTTAAGAGAAGTTGA+AGG | + | chr7_1:5583668-5583687 | None:intergenic | 35.0% |
| TGACATAGCAACCACAATTA+TGG | + | chr7_1:5583858-5583877 | None:intergenic | 35.0% | |
| GTAGTCTGTAACCTTAATTG+CGG | - | chr7_1:5583923-5583942 | Msa1006770:intron | 35.0% | |
| ATATGTTGTGACCGCAATTA+AGG | + | chr7_1:5583937-5583956 | None:intergenic | 35.0% | |
| TCGTAGCATAATTACATCTG+CGG | - | chr7_1:5584030-5584049 | Msa1006770:intron | 35.0% | |
| CAAATTCAAAGCTCTTCTCA+AGG | + | chr7_1:5584316-5584335 | None:intergenic | 35.0% | |
| !! | CTTGAGAAGAGCTTTGAATT+TGG | - | chr7_1:5584314-5584333 | Msa1006770:intron | 35.0% |
| ! | CAAGTTGCACTTTTCTTTCT+GGG | + | chr7_1:5584352-5584371 | None:intergenic | 35.0% |
| AGCCAAGACAAATTGCTATA+TGG | - | chr7_1:5584390-5584409 | Msa1006770:intron | 35.0% | |
| CAGCTTCAAATTTCTTCTTG+AGG | + | chr7_1:5584472-5584491 | None:intergenic | 35.0% | |
| ! | GAAGAAATTTGAAGCTGTCA+AGG | - | chr7_1:5584475-5584494 | Msa1006770:intron | 35.0% |
| !! | TTTTCTTCGATAGGCTAGTT+TGG | + | chr7_1:5584635-5584654 | None:intergenic | 35.0% |
| !!! | ATAGGCTAGTTTTCTTCGAT+AGG | + | chr7_1:5584644-5584663 | None:intergenic | 35.0% |
| ACTTTGATACACAAAGGAAC+AGG | + | chr7_1:5584936-5584955 | None:intergenic | 35.0% | |
| GAATGGCCAACAATTAATCA+AGG | + | chr7_1:5585419-5585438 | None:intergenic | 35.0% | |
| !! | ATACTGACTCTTCACAAGAA+TGG | + | chr7_1:5585436-5585455 | None:intergenic | 35.0% |
| ATGTCTTGTGCTTAGAAACA+TGG | + | chr7_1:5585531-5585550 | None:intergenic | 35.0% | |
| ACACATGCATAAAACCATGT+TGG | - | chr7_1:5585581-5585600 | Msa1006770:CDS | 35.0% | |
| ! | TACATATATTGGTCTCGTGT+CGG | + | chr7_1:5585838-5585857 | None:intergenic | 35.0% |
| ACCTAATATATCGGTGTGTT+AGG | - | chr7_1:5585935-5585954 | Msa1006770:intron | 35.0% | |
| TTTAGATCTCTCAAGAACAC+AGG | - | chr7_1:5586165-5586184 | Msa1006770:intron | 35.0% | |
| !! | AAGTTGGTAGAAGGCTAATT+AGG | + | chr7_1:5586228-5586247 | None:intergenic | 35.0% |
| !! | GGTTTAATGAAGTTGGTAGA+AGG | + | chr7_1:5586237-5586256 | None:intergenic | 35.0% |
| GATGTGAATTGAAGAAGTTG+GGG | + | chr7_1:5586271-5586290 | None:intergenic | 35.0% | |
| AAATGATGCATCTATGTCCA+AGG | + | chr7_1:5586364-5586383 | None:intergenic | 35.0% | |
| ACATGAAACTATGAGGTGGT+GGG | + | chr7_1:5583616-5583635 | None:intergenic | 40.0% | |
| AACATGAAACTATGAGGTGG+TGG | + | chr7_1:5583617-5583636 | None:intergenic | 40.0% | |
| ! | AGTGTTGAGGTGGAAAAGAA+GGG | + | chr7_1:5583691-5583710 | None:intergenic | 40.0% |
| !! | AAGTGTTGAGGTGGAAAAGA+AGG | + | chr7_1:5583692-5583711 | None:intergenic | 40.0% |
| !! | TGACCTTGTTGAAAGTGTTG+AGG | + | chr7_1:5583704-5583723 | None:intergenic | 40.0% |
| AACCACAATTATGGTCGCAT+CGG | + | chr7_1:5583849-5583868 | None:intergenic | 40.0% | |
| ! | TGCGGTCACAACATATTTTG+AGG | - | chr7_1:5583941-5583960 | Msa1006770:intron | 40.0% |
| AACCACAATTAAAGCCGCAT+TGG | - | chr7_1:5583982-5584001 | Msa1006770:intron | 40.0% | |
| TGCTACGAACGTTTATGTTG+CGG | + | chr7_1:5584018-5584037 | None:intergenic | 40.0% | |
| CATGATCATCATGAAGTGCA+TGG | - | chr7_1:5584212-5584231 | Msa1006770:intron | 40.0% | |
| !! | TCTGATGATGGATTCCAAAG+TGG | - | chr7_1:5584248-5584267 | Msa1006770:intron | 40.0% |
| TCTTCTTCTTCTCTCCACTT+TGG | + | chr7_1:5584265-5584284 | None:intergenic | 40.0% | |
| GAAGAAGATCAGGCTGAATT+TGG | - | chr7_1:5584277-5584296 | Msa1006770:intron | 40.0% | |
| ! | GCAAGTTGCACTTTTCTTTC+TGG | + | chr7_1:5584353-5584372 | None:intergenic | 40.0% |
| ! | AAGAAAAGTGCAACTTGCCA+AGG | - | chr7_1:5584355-5584374 | Msa1006770:intron | 40.0% |
| CAATCAGAAACTACAAGCAG+AGG | - | chr7_1:5584523-5584542 | Msa1006770:intron | 40.0% | |
| GAAACTACAAGCAGAGGTAA+AGG | - | chr7_1:5584529-5584548 | Msa1006770:intron | 40.0% | |
| GCAATTCATAAAGGGGAACA+TGG | - | chr7_1:5584974-5584993 | Msa1006770:intron | 40.0% | |
| !! | TCTTCTTGTCGATTCCAACA+TGG | + | chr7_1:5585598-5585617 | None:intergenic | 40.0% |
| !!! | TCTTTTAAGTACCGATGCAC+AGG | + | chr7_1:5585910-5585929 | None:intergenic | 40.0% |
| GCCTAACACACCGATATATT+AGG | + | chr7_1:5585939-5585958 | None:intergenic | 40.0% | |
| AACTGCAATGCAACACCATT+AGG | + | chr7_1:5586040-5586059 | None:intergenic | 40.0% | |
| ! | AAAAGCAAGGATTGGTGTGA+AGG | - | chr7_1:5586070-5586089 | Msa1006770:intron | 40.0% |
| TGAAAGAAACTGAGGGTTCA+TGG | - | chr7_1:5586110-5586129 | Msa1006770:intron | 40.0% | |
| GAAGTTGGGGTATGTTGTTA+GGG | + | chr7_1:5586258-5586277 | None:intergenic | 40.0% | |
| AGAAGTTGGGGTATGTTGTT+AGG | + | chr7_1:5586259-5586278 | None:intergenic | 40.0% | |
| CGCTGCAAACCTTAATATTG+TGG | - | chr7_1:5586449-5586468 | Msa1006770:five_prime_UTR | 40.0% | |
| TTGAGGTGGAAAAGAAGGGA+AGG | + | chr7_1:5583687-5583706 | None:intergenic | 45.0% | |
| !! | CCTTGTTGAAAGTGTTGAGG+TGG | + | chr7_1:5583701-5583720 | None:intergenic | 45.0% |
| CCACCTCAACACTTTCAACA+AGG | - | chr7_1:5583698-5583717 | Msa1006770:CDS | 45.0% | |
| ! | GACCAATGCGGCTTTAATTG+TGG | + | chr7_1:5583987-5584006 | None:intergenic | 45.0% |
| GCTACGAACGTTTATGTTGC+GGG | + | chr7_1:5584017-5584036 | None:intergenic | 45.0% | |
| GTGGAGAGAAGAAGAAGATC+AGG | - | chr7_1:5584267-5584286 | Msa1006770:intron | 45.0% | |
| TGCAACTTGCCAAGGCTTTA+GGG | - | chr7_1:5584363-5584382 | Msa1006770:intron | 45.0% | |
| ! | GGGAGTAGTGTGCTATTGAT+CGG | - | chr7_1:5584888-5584907 | Msa1006770:intron | 45.0% |
| ! | ATTTTGTCGTGCCTGTGCAT+CGG | - | chr7_1:5585896-5585915 | Msa1006770:intron | 45.0% |
| TTGATGAGCATCAGAACCTC+TGG | - | chr7_1:5586338-5586357 | Msa1006770:CDS | 45.0% | |
| !! | GTAATAAAATAAAATAAATA+TGG | + | chr7_1:5585275-5585294 | None:intergenic | 5.0% |
| !!! | TTATTTTATTTTATTACAAT+TGG | - | chr7_1:5585278-5585297 | Msa1006770:intron | 5.0% |
| GACCGATGCGACCATAATTG+TGG | - | chr7_1:5583844-5583863 | Msa1006770:CDS | 50.0% | |
| TGGTTGCTATGTCATCGCAG+AGG | - | chr7_1:5583864-5583883 | Msa1006770:CDS | 50.0% | |
| GCGGGAAAATGTGACCAATG+CGG | + | chr7_1:5583999-5584018 | None:intergenic | 50.0% | |
| GTGCAACTTGCCAAGGCTTT+AGG | - | chr7_1:5584362-5584381 | Msa1006770:intron | 50.0% | |
| CATAAAGGGGAACATGGTCG+AGG | - | chr7_1:5584980-5584999 | Msa1006770:intron | 50.0% | |
| ! | AGCAAGGATTGGTGTGAAGG+TGG | - | chr7_1:5586073-5586092 | Msa1006770:intron | 50.0% |
| ACTGAGGGTTCATGGAGCAA+TGG | - | chr7_1:5586118-5586137 | Msa1006770:intron | 50.0% | |
| GGGTTTGGCACTCACTGTCA+TGG | + | chr7_1:5583456-5583475 | None:intergenic | 55.0% | |
| TGGCTGCAACCCTAAAGCCT+TGG | + | chr7_1:5584375-5584394 | None:intergenic | 55.0% | |
| AGCATCAGAACCTCTGGCCT+TGG | - | chr7_1:5586344-5586363 | Msa1006770:exon | 55.0% | |
| GCATCTATGTCCAAGGCCAG+AGG | + | chr7_1:5586357-5586376 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 5583436 | 5586528 | 5583436 | ID=Msa1006770;Name=Msa1006770 |
| chr7_1 | mRNA | 5583436 | 5586528 | 5583436 | ID=Msa1006770-mRNA-1;Parent=Msa1006770;Name=Msa1006770-mRNA-1;_AED=0.02;_eAED=0.02;_QI=169|1|0.66|1|1|1|3|156|272 |
| chr7_1 | exon | 5583436 | 5583906 | 5583436 | ID=Msa1006770-mRNA-1:exon:1804;Parent=Msa1006770-mRNA-1 |
| chr7_1 | exon | 5585420 | 5585808 | 5585420 | ID=Msa1006770-mRNA-1:exon:1803;Parent=Msa1006770-mRNA-1 |
| chr7_1 | exon | 5586245 | 5586528 | 5586245 | ID=Msa1006770-mRNA-1:exon:1802;Parent=Msa1006770-mRNA-1 |
| chr7_1 | five_prime_UTR | 5586360 | 5586528 | 5586360 | ID=Msa1006770-mRNA-1:five_prime_utr;Parent=Msa1006770-mRNA-1 |
| chr7_1 | CDS | 5586245 | 5586359 | 5586245 | ID=Msa1006770-mRNA-1:cds;Parent=Msa1006770-mRNA-1 |
| chr7_1 | CDS | 5585420 | 5585808 | 5585420 | ID=Msa1006770-mRNA-1:cds;Parent=Msa1006770-mRNA-1 |
| chr7_1 | CDS | 5583592 | 5583906 | 5583592 | ID=Msa1006770-mRNA-1:cds;Parent=Msa1006770-mRNA-1 |
| chr7_1 | three_prime_UTR | 5583436 | 5583591 | 5583436 | ID=Msa1006770-mRNA-1:three_prime_utr;Parent=Msa1006770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
