Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006800 | XP_039685680.1 | 90.875 | 800 | 67 | 2 | 1 | 794 | 1 | 800 | 0.0 | 1513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006800 | sp|Q9SZL8|FRS5_ARATH | 26.887 | 636 | 389 | 15 | 50 | 679 | 72 | 637 | 5.59e-68 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006800 | D3YBB9 | 79.136 | 810 | 142 | 5 | 14 | 812 | 54 | 847 | 0.0 | 1324 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1006800 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006800 | MtrunA17_Chr3g0088371 | 83.696 | 184 | 27 | 1 | 632 | 812 | 1 | 184 | 1.23e-103 | 317 |
| Msa1006800 | MtrunA17_Chr2g0324011 | 30.806 | 633 | 364 | 12 | 52 | 679 | 8 | 571 | 7.38e-101 | 324 |
| Msa1006800 | MtrunA17_Chr3g0082121 | 33.610 | 482 | 287 | 8 | 57 | 536 | 49 | 499 | 4.79e-86 | 288 |
| Msa1006800 | MtrunA17_Chr3g0082121 | 29.630 | 135 | 86 | 3 | 608 | 741 | 529 | 655 | 2.38e-12 | 70.9 |
| Msa1006800 | MtrunA17_Chr1g0202341 | 29.338 | 634 | 367 | 15 | 50 | 676 | 50 | 609 | 1.23e-81 | 276 |
| Msa1006800 | MtrunA17_Chr8g0363841 | 28.708 | 627 | 376 | 14 | 56 | 679 | 22 | 580 | 3.85e-77 | 263 |
| Msa1006800 | MtrunA17_Chr1g0203721 | 26.172 | 768 | 464 | 19 | 13 | 757 | 18 | 705 | 1.17e-76 | 266 |
| Msa1006800 | MtrunA17_Chr5g0448761 | 25.983 | 712 | 452 | 16 | 50 | 755 | 59 | 701 | 2.98e-71 | 249 |
| Msa1006800 | MtrunA17_Chr2g0296781 | 26.883 | 677 | 411 | 17 | 55 | 722 | 1 | 602 | 1.16e-70 | 247 |
| Msa1006800 | MtrunA17_Chr6g0458391 | 27.345 | 629 | 354 | 15 | 57 | 676 | 231 | 765 | 1.56e-66 | 236 |
| Msa1006800 | MtrunA17_Chr6g0477261 | 27.684 | 531 | 334 | 11 | 196 | 722 | 7 | 491 | 1.41e-64 | 228 |
| Msa1006800 | MtrunA17_Chr1g0164591 | 34.375 | 320 | 195 | 4 | 147 | 464 | 1 | 307 | 1.17e-62 | 214 |
| Msa1006800 | MtrunA17_Chr5g0441581 | 26.113 | 674 | 400 | 18 | 39 | 703 | 25 | 609 | 4.21e-62 | 222 |
| Msa1006800 | MtrunA17_Chr2g0287651 | 25.265 | 661 | 416 | 12 | 21 | 676 | 45 | 632 | 1.29e-59 | 218 |
| Msa1006800 | MtrunA17_Chr1g0207551 | 25.243 | 721 | 441 | 19 | 22 | 732 | 9 | 641 | 3.00e-57 | 210 |
| Msa1006800 | MtrunA17_Chr2g0329031 | 25.247 | 709 | 428 | 19 | 39 | 737 | 2 | 618 | 4.11e-57 | 209 |
| Msa1006800 | MtrunA17_Chr1g0172971 | 76.515 | 132 | 16 | 1 | 1 | 132 | 1 | 117 | 8.53e-57 | 204 |
| Msa1006800 | MtrunA17_Chr5g0440451 | 24.306 | 757 | 460 | 19 | 1 | 737 | 1 | 664 | 2.70e-55 | 206 |
| Msa1006800 | MtrunA17_Chr1g0198761 | 27.488 | 633 | 371 | 18 | 56 | 674 | 52 | 610 | 2.15e-54 | 201 |
| Msa1006800 | MtrunA17_Chr1g0196541 | 24.640 | 625 | 399 | 13 | 55 | 676 | 1 | 556 | 3.26e-54 | 200 |
| Msa1006800 | MtrunA17_Chr7g0258861 | 35.256 | 312 | 178 | 6 | 46 | 352 | 2 | 294 | 5.71e-54 | 189 |
| Msa1006800 | MtrunA17_Chr3g0080351 | 25.447 | 727 | 438 | 19 | 15 | 732 | 44 | 675 | 1.70e-53 | 199 |
| Msa1006800 | MtrunA17_Chr3g0118611 | 27.600 | 500 | 306 | 10 | 237 | 733 | 111 | 557 | 6.22e-53 | 197 |
| Msa1006800 | MtrunA17_Chr1g0203051 | 23.769 | 589 | 380 | 10 | 66 | 651 | 94 | 616 | 1.72e-51 | 191 |
| Msa1006800 | MtrunA17_Chr2g0276841 | 26.133 | 662 | 392 | 21 | 65 | 712 | 84 | 662 | 6.47e-49 | 184 |
| Msa1006800 | MtrunA17_Chr2g0287061 | 24.682 | 628 | 356 | 16 | 57 | 679 | 189 | 704 | 1.91e-48 | 184 |
| Msa1006800 | MtrunA17_Chr2g0290391 | 26.060 | 637 | 374 | 19 | 55 | 674 | 55 | 611 | 5.35e-47 | 179 |
| Msa1006800 | MtrunA17_Chr2g0291591 | 26.782 | 519 | 317 | 16 | 14 | 515 | 29 | 501 | 5.61e-44 | 167 |
| Msa1006800 | MtrunA17_Chr2g0291581 | 24.480 | 625 | 393 | 14 | 54 | 676 | 74 | 621 | 7.70e-43 | 166 |
| Msa1006800 | MtrunA17_Chr6g0475591 | 95.890 | 73 | 3 | 0 | 204 | 276 | 1 | 73 | 9.92e-43 | 149 |
| Msa1006800 | MtrunA17_Chr5g0448511 | 25.111 | 450 | 285 | 8 | 232 | 679 | 1 | 400 | 1.76e-42 | 163 |
| Msa1006800 | MtrunA17_Chr5g0431001 | 27.578 | 446 | 288 | 12 | 56 | 489 | 66 | 488 | 1.05e-41 | 160 |
| Msa1006800 | MtrunA17_Chr2g0294841 | 25.827 | 635 | 369 | 22 | 57 | 671 | 51 | 603 | 2.56e-37 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006800 | AT4G38180.1 | 26.887 | 636 | 389 | 15 | 50 | 679 | 72 | 637 | 5.69e-69 | 243 |
| Msa1006800 | AT4G15090.1 | 25.683 | 732 | 456 | 18 | 66 | 787 | 66 | 719 | 7.06e-61 | 221 |
| Msa1006800 | AT4G15090.5 | 25.683 | 732 | 456 | 18 | 66 | 787 | 66 | 719 | 7.06e-61 | 221 |
| Msa1006800 | AT4G15090.3 | 25.683 | 732 | 456 | 18 | 66 | 787 | 66 | 719 | 7.06e-61 | 221 |
| Msa1006800 | AT4G15090.2 | 25.683 | 732 | 456 | 18 | 66 | 787 | 66 | 719 | 7.06e-61 | 221 |
| Msa1006800 | AT4G15090.4 | 25.683 | 732 | 456 | 18 | 66 | 787 | 66 | 719 | 7.06e-61 | 221 |
| Msa1006800 | AT3G06250.2 | 25.078 | 642 | 360 | 17 | 39 | 675 | 178 | 703 | 3.05e-52 | 195 |
| Msa1006800 | AT3G06250.1 | 25.078 | 642 | 360 | 17 | 39 | 675 | 178 | 703 | 3.05e-52 | 195 |
| Msa1006800 | AT3G06250.3 | 25.078 | 642 | 360 | 17 | 39 | 675 | 178 | 703 | 3.05e-52 | 195 |
| Msa1006800 | AT3G22170.2 | 23.865 | 683 | 422 | 16 | 48 | 722 | 67 | 659 | 7.20e-51 | 192 |
| Msa1006800 | AT3G22170.1 | 23.865 | 683 | 422 | 16 | 48 | 722 | 67 | 659 | 7.20e-51 | 192 |
| Msa1006800 | AT1G76320.3 | 24.929 | 706 | 431 | 20 | 57 | 756 | 3 | 615 | 1.44e-50 | 189 |
| Msa1006800 | AT1G76320.2 | 24.363 | 706 | 439 | 18 | 55 | 756 | 1 | 615 | 2.41e-50 | 189 |
| Msa1006800 | AT1G76320.1 | 24.363 | 706 | 439 | 18 | 55 | 756 | 1 | 615 | 2.59e-50 | 189 |
| Msa1006800 | AT1G76320.4 | 24.363 | 706 | 439 | 18 | 55 | 756 | 1 | 615 | 2.59e-50 | 189 |
| Msa1006800 | AT2G27110.3 | 24.747 | 594 | 388 | 13 | 229 | 817 | 36 | 575 | 2.98e-50 | 189 |
| Msa1006800 | AT2G27110.2 | 24.747 | 594 | 388 | 13 | 229 | 817 | 181 | 720 | 5.65e-50 | 189 |
| Msa1006800 | AT2G27110.1 | 24.747 | 594 | 388 | 13 | 229 | 817 | 181 | 720 | 5.65e-50 | 189 |
| Msa1006800 | AT5G18960.2 | 23.688 | 705 | 412 | 20 | 37 | 733 | 197 | 783 | 5.48e-47 | 180 |
| Msa1006800 | AT5G18960.1 | 23.688 | 705 | 412 | 20 | 37 | 733 | 197 | 783 | 5.48e-47 | 180 |
| Msa1006800 | AT1G10240.2 | 25.040 | 623 | 373 | 21 | 65 | 673 | 62 | 604 | 1.55e-44 | 171 |
| Msa1006800 | AT1G10240.1 | 25.040 | 623 | 373 | 21 | 65 | 673 | 62 | 604 | 1.55e-44 | 171 |
| Msa1006800 | AT4G38170.1 | 23.944 | 497 | 299 | 14 | 251 | 733 | 24 | 455 | 1.76e-43 | 166 |
| Msa1006800 | AT5G28530.1 | 24.647 | 637 | 385 | 18 | 56 | 674 | 60 | 619 | 1.94e-41 | 162 |
| Msa1006800 | AT1G80010.1 | 24.961 | 637 | 385 | 22 | 57 | 676 | 101 | 661 | 2.26e-41 | 162 |
| Msa1006800 | AT2G32250.5 | 23.475 | 754 | 443 | 22 | 24 | 769 | 13 | 640 | 7.04e-41 | 161 |
| Msa1006800 | AT2G32250.2 | 23.475 | 754 | 443 | 22 | 24 | 769 | 13 | 640 | 7.23e-41 | 161 |
| Msa1006800 | AT2G32250.4 | 23.475 | 754 | 443 | 22 | 24 | 769 | 13 | 640 | 7.23e-41 | 161 |
| Msa1006800 | AT2G32250.6 | 23.475 | 754 | 443 | 22 | 24 | 769 | 13 | 640 | 7.63e-41 | 161 |
| Msa1006800 | AT2G32250.1 | 23.475 | 754 | 443 | 22 | 24 | 769 | 13 | 640 | 7.63e-41 | 161 |
| Msa1006800 | AT2G32250.3 | 23.475 | 754 | 443 | 22 | 24 | 769 | 13 | 640 | 7.63e-41 | 161 |
| Msa1006800 | AT5G28530.3 | 24.490 | 637 | 382 | 19 | 56 | 674 | 60 | 615 | 1.45e-40 | 159 |
| Msa1006800 | AT5G28530.2 | 24.490 | 637 | 382 | 19 | 56 | 674 | 60 | 615 | 1.45e-40 | 159 |
| Msa1006800 | AT2G32250.8 | 23.578 | 721 | 419 | 21 | 57 | 769 | 3 | 599 | 2.29e-40 | 160 |
| Msa1006800 | AT2G32250.7 | 23.578 | 721 | 419 | 21 | 57 | 769 | 3 | 599 | 2.67e-40 | 159 |
| Msa1006800 | AT1G52520.1 | 23.077 | 624 | 400 | 17 | 57 | 676 | 91 | 638 | 3.96e-36 | 146 |
| Msa1006800 | AT4G19990.3 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 1.94e-31 | 132 |
| Msa1006800 | AT4G19990.3 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.36e-11 | 67.0 |
| Msa1006800 | AT4G19990.4 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 1.94e-31 | 132 |
| Msa1006800 | AT4G19990.4 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.36e-11 | 67.0 |
| Msa1006800 | AT4G19990.5 | 24.439 | 446 | 288 | 9 | 57 | 499 | 27 | 426 | 1.98e-31 | 132 |
| Msa1006800 | AT4G19990.5 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.21e-11 | 67.4 |
| Msa1006800 | AT4G19990.7 | 24.439 | 446 | 288 | 9 | 57 | 499 | 41 | 440 | 2.19e-31 | 132 |
| Msa1006800 | AT4G19990.7 | 37.113 | 97 | 51 | 3 | 607 | 703 | 511 | 597 | 4.33e-11 | 67.0 |
| Msa1006800 | AT4G19990.6 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 2.98e-31 | 131 |
| Msa1006800 | AT4G19990.6 | 35.052 | 97 | 53 | 2 | 607 | 703 | 497 | 583 | 4.55e-11 | 67.0 |
| Msa1006800 | AT4G19990.2 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 2.98e-31 | 131 |
| Msa1006800 | AT4G19990.2 | 35.052 | 97 | 53 | 2 | 607 | 703 | 497 | 583 | 4.55e-11 | 67.0 |
| Msa1006800 | AT4G19990.1 | 29.104 | 268 | 183 | 4 | 235 | 499 | 106 | 369 | 7.29e-30 | 127 |
| Msa1006800 | AT4G19990.1 | 37.113 | 97 | 51 | 3 | 607 | 703 | 440 | 526 | 4.16e-11 | 67.0 |
| Msa1006800 | AT5G28530.4 | 22.488 | 627 | 348 | 21 | 56 | 674 | 60 | 556 | 8.26e-23 | 104 |
| Msa1006800 | AT5G28530.5 | 22.329 | 627 | 345 | 22 | 56 | 674 | 60 | 552 | 4.62e-22 | 102 |
Find 117 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 7_1:-5613346 | Msa1006800:CDS |
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 7_1:+5612526 | None:intergenic |
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 7_1:-5613936 | Msa1006800:intron |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 7_1:-5613388 | Msa1006800:CDS |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 7_1:+5613809 | None:intergenic |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 7_1:+5612532 | None:intergenic |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 7_1:+5614981 | None:intergenic |
| ATGTATTGATGATTATATTT+TGG | 0.303619 | 7_1:-5612288 | Msa1006800:three_prime_UTR |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | 7_1:+5613048 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 7_1:+5614790 | None:intergenic |
| GCCTTCGAATGTTGATGTTT+TGG | 0.322848 | 7_1:-5613097 | Msa1006800:CDS |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 7_1:-5614474 | Msa1006800:CDS |
| TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 7_1:-5612928 | Msa1006800:CDS |
| GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 7_1:+5613532 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 7_1:+5614424 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 7_1:+5613923 | None:intergenic |
| CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 7_1:-5612688 | Msa1006800:CDS |
| TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 7_1:+5612464 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 7_1:-5614417 | Msa1006800:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 7_1:-5614425 | Msa1006800:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 7_1:-5614715 | Msa1006800:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 7_1:+5612550 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 7_1:-5613214 | Msa1006800:CDS |
| GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 7_1:-5613563 | Msa1006800:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 7_1:-5612972 | Msa1006800:CDS |
| GTCTTATGAAGTTATGGGTC+AGG | 0.415385 | 7_1:-5614709 | Msa1006800:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 7_1:-5615029 | Msa1006800:CDS |
| AAAACACCTGGAAAACTATT+CGG | 0.428349 | 7_1:+5613750 | None:intergenic |
| GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 7_1:-5612589 | Msa1006800:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 7_1:-5614777 | Msa1006800:CDS |
| TTGATATCGTTGTGCTTGAC+TGG | 0.433430 | 7_1:+5612780 | None:intergenic |
| GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 7_1:-5612655 | Msa1006800:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 7_1:+5615192 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 7_1:+5615191 | None:intergenic |
| TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 7_1:+5612558 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 7_1:-5614912 | Msa1006800:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 7_1:-5613514 | Msa1006800:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 7_1:-5614860 | Msa1006800:CDS |
| ACATCAACTTCATCTGATAG+TGG | 0.459514 | 7_1:-5615317 | Msa1006800:CDS |
| CTTGCTTTGCATTTATTCAC+AGG | 0.460007 | 7_1:-5613248 | Msa1006800:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 7_1:-5614747 | Msa1006800:CDS |
| GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 7_1:+5613294 | None:intergenic |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 7_1:+5614969 | None:intergenic |
| GAAGTTATGGGTCAGGGAGT+TGG | 0.465561 | 7_1:-5614702 | Msa1006800:CDS |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 7_1:-5614714 | Msa1006800:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 7_1:-5614992 | Msa1006800:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 7_1:+5612871 | None:intergenic |
| GGCAGAAATTCCTTATCAAT+CGG | 0.471938 | 7_1:-5612474 | Msa1006800:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 7_1:-5613035 | Msa1006800:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 7_1:-5613515 | Msa1006800:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 7_1:+5614663 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 7_1:+5613212 | None:intergenic |
| CTTTCTAAAGGTATTCGTAC+AGG | 0.486879 | 7_1:-5612643 | Msa1006800:CDS |
| GATCATGATCTTCAAAACTT+GGG | 0.487945 | 7_1:+5613049 | None:intergenic |
| CATTCTTTGAAGACAATACC+TGG | 0.489494 | 7_1:-5612889 | Msa1006800:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 7_1:-5613198 | Msa1006800:CDS |
| GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 7_1:+5612804 | None:intergenic |
| TTGAAGACTTAGATGGCGTC+GGG | 0.493598 | 7_1:+5612620 | None:intergenic |
| CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 7_1:-5612588 | Msa1006800:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 7_1:-5613374 | Msa1006800:CDS |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 7_1:-5615193 | Msa1006800:CDS |
| TGAATAAATGCAAAGCAAGA+AGG | 0.503349 | 7_1:+5613252 | None:intergenic |
| TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 7_1:+5612559 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 7_1:+5614918 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 7_1:-5614895 | Msa1006800:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 7_1:-5613355 | Msa1006800:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 7_1:-5615063 | Msa1006800:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 7_1:+5614807 | None:intergenic |
| GAATAAATGCAAAGCAAGAA+GGG | 0.521406 | 7_1:+5613253 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 7_1:+5615232 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 7_1:-5615125 | Msa1006800:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 7_1:-5615018 | Msa1006800:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 7_1:-5614853 | Msa1006800:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 7_1:+5613217 | None:intergenic |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 7_1:-5613724 | Msa1006800:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 7_1:+5614819 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 7_1:+5615193 | None:intergenic |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 7_1:+5615231 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 7_1:-5613197 | Msa1006800:CDS |
| AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 7_1:+5613411 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 7_1:-5615017 | Msa1006800:CDS |
| GTTATGGGTCAGGGAGTTGG+TGG | 0.546610 | 7_1:-5614699 | Msa1006800:CDS |
| AACACAATAACGCACTAGCC+TGG | 0.552106 | 7_1:+5613778 | None:intergenic |
| AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 7_1:-5612925 | Msa1006800:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 7_1:-5612971 | Msa1006800:CDS |
| GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 7_1:-5613560 | Msa1006800:CDS |
| TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 7_1:-5612604 | Msa1006800:CDS |
| GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 7_1:+5613293 | None:intergenic |
| TGAAGCTTTATCAGTGATTG+TGG | 0.572057 | 7_1:-5612431 | Msa1006800:CDS |
| TTTGAAGACTTAGATGGCGT+CGG | 0.575863 | 7_1:+5612619 | None:intergenic |
| ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 7_1:+5613050 | None:intergenic |
| ATGAAATCGACCGTCAATGT+TGG | 0.583819 | 7_1:-5612814 | Msa1006800:CDS |
| ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 7_1:-5613296 | Msa1006800:CDS |
| CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 7_1:-5613527 | Msa1006800:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | 7_1:-5613120 | Msa1006800:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 7_1:-5614859 | Msa1006800:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 7_1:-5615272 | Msa1006800:CDS |
| TCCAAAACATCAACATTCGA+AGG | 0.607058 | 7_1:+5613096 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 7_1:-5613211 | Msa1006800:CDS |
| TCTTATGAAGTTATGGGTCA+GGG | 0.609153 | 7_1:-5614708 | Msa1006800:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 7_1:-5614970 | Msa1006800:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | 7_1:-5613119 | Msa1006800:CDS |
| TTCACAAACTCAATAACCTG+TGG | 0.626760 | 7_1:+5614954 | None:intergenic |
| TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 7_1:-5612587 | Msa1006800:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 7_1:-5613373 | Msa1006800:CDS |
| GAAGCTTTATCAGTGATTGT+GGG | 0.649096 | 7_1:-5612430 | Msa1006800:CDS |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 7_1:+5613798 | None:intergenic |
| GATTTCATCTTATCGACAGA+CGG | 0.652942 | 7_1:+5612829 | None:intergenic |
| GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 7_1:+5613554 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 7_1:-5612970 | Msa1006800:CDS |
| TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 7_1:+5613406 | None:intergenic |
| TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 7_1:+5612555 | None:intergenic |
| AATAAATGCAAAGCAAGAAG+GGG | 0.664515 | 7_1:+5613254 | None:intergenic |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 7_1:+5615233 | None:intergenic |
| AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 7_1:+5613558 | None:intergenic |
| AGGGGTGTACTTGTTTACAA+CGG | 0.695086 | 7_1:+5613272 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 7_1:-5613796 | Msa1006800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTGATATGATTTAT+TGG | - | chr7_1:5615273-5615292 | Msa1006800:CDS | 10.0% |
| !!! | TTTTGATGAGTTAAATAATT+TGG | - | chr7_1:5613959-5613978 | Msa1006800:intron | 15.0% |
| !!! | ATTGATTGTTTTTATAAGTT+TGG | - | chr7_1:5615213-5615232 | Msa1006800:CDS | 15.0% |
| !!! | TTTTATAAGTTTGGTTTTTT+AGG | - | chr7_1:5615222-5615241 | Msa1006800:CDS | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr7_1:5612468-5612487 | Msa1006800:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | - | chr7_1:5612754-5612773 | Msa1006800:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | - | chr7_1:5612755-5612774 | Msa1006800:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | + | chr7_1:5613068-5613087 | None:intergenic | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | - | chr7_1:5613258-5613277 | Msa1006800:CDS | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | - | chr7_1:5613488-5613507 | Msa1006800:CDS | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | - | chr7_1:5613551-5613570 | Msa1006800:CDS | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | - | chr7_1:5614000-5614019 | Msa1006800:intron | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | - | chr7_1:5614001-5614020 | Msa1006800:intron | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | - | chr7_1:5614029-5614048 | Msa1006800:intron | 20.0% |
| !! | CTTATAAAAACAATCAATCA+GGG | + | chr7_1:5615211-5615230 | None:intergenic | 20.0% |
| !! | ACTTATAAAAACAATCAATC+AGG | + | chr7_1:5615212-5615231 | None:intergenic | 20.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | - | chr7_1:5612502-5612521 | Msa1006800:CDS | 25.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | - | chr7_1:5612551-5612570 | Msa1006800:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr7_1:5613102-5613121 | Msa1006800:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | - | chr7_1:5613140-5613159 | Msa1006800:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr7_1:5613189-5613208 | Msa1006800:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | + | chr7_1:5613215-5613234 | None:intergenic | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | - | chr7_1:5613334-5613353 | Msa1006800:CDS | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | - | chr7_1:5613358-5613377 | Msa1006800:CDS | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | - | chr7_1:5613359-5613378 | Msa1006800:CDS | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | - | chr7_1:5613412-5613431 | Msa1006800:CDS | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | - | chr7_1:5613436-5613455 | Msa1006800:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | - | chr7_1:5613649-5613668 | Msa1006800:CDS | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr7_1:5613694-5613713 | None:intergenic | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | - | chr7_1:5614033-5614052 | Msa1006800:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr7_1:5614226-5614245 | Msa1006800:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr7_1:5614400-5614419 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr7_1:5614400-5614419 | Msa1006800:intron | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | + | chr7_1:5614447-5614466 | None:intergenic | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | - | chr7_1:5614460-5614479 | Msa1006800:CDS | 25.0% |
| !! | AGAAAAATTTTAGATGACTC+TGG | + | chr7_1:5614908-5614927 | None:intergenic | 25.0% |
| !!! | TCATCTAAAATTTTTCTCGA+CGG | - | chr7_1:5614911-5614930 | Msa1006800:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | + | chr7_1:5615085-5615104 | None:intergenic | 25.0% |
| ! | ATTATGAAAAAGCTAGAGAA+AGG | - | chr7_1:5615119-5615138 | Msa1006800:CDS | 25.0% |
| TCCATGATTCTTTATTGCTA+GGG | + | chr7_1:5612425-5612444 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | + | chr7_1:5612426-5612445 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | - | chr7_1:5612489-5612508 | Msa1006800:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | chr7_1:5612585-5612604 | Msa1006800:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr7_1:5612596-5612615 | Msa1006800:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr7_1:5612597-5612616 | Msa1006800:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | - | chr7_1:5612622-5612641 | Msa1006800:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | - | chr7_1:5612761-5612780 | Msa1006800:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | + | chr7_1:5612827-5612846 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | - | chr7_1:5612867-5612886 | Msa1006800:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | - | chr7_1:5612900-5612919 | Msa1006800:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | + | chr7_1:5612954-5612973 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr7_1:5613193-5613212 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr7_1:5613197-5613216 | Msa1006800:CDS | 30.0% | |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | - | chr7_1:5613221-5613240 | Msa1006800:CDS | 30.0% |
| CTTACTTATTTGAACTACAC+GGG | - | chr7_1:5613335-5613354 | Msa1006800:CDS | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | + | chr7_1:5613366-5613385 | None:intergenic | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | + | chr7_1:5613400-5613419 | None:intergenic | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | - | chr7_1:5613678-5613697 | Msa1006800:CDS | 30.0% | |
| AAAACACCTGGAAAACTATT+CGG | + | chr7_1:5613867-5613886 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | - | chr7_1:5613915-5613934 | Msa1006800:CDS | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | + | chr7_1:5614363-5614382 | None:intergenic | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | + | chr7_1:5614364-5614383 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | + | chr7_1:5614365-5614384 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr7_1:5614405-5614424 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr7_1:5614403-5614422 | Msa1006800:intron | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | - | chr7_1:5614494-5614513 | Msa1006800:CDS | 30.0% |
| ATCATGATCTTCAAAACTTG+GGG | + | chr7_1:5614567-5614586 | None:intergenic | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | + | chr7_1:5614568-5614587 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | - | chr7_1:5614579-5614598 | Msa1006800:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | - | chr7_1:5614747-5614766 | Msa1006800:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr7_1:5615067-5615086 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTCCGATTGATA+AGG | + | chr7_1:5615153-5615172 | None:intergenic | 30.0% |
| ACATCAACTTCATCTGATAG+TGG | - | chr7_1:5612297-5612316 | Msa1006800:three_prime_UTR | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | + | chr7_1:5612424-5612443 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | + | chr7_1:5612663-5612682 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | - | chr7_1:5612680-5612699 | Msa1006800:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | - | chr7_1:5612685-5612704 | Msa1006800:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | - | chr7_1:5612686-5612705 | Msa1006800:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | - | chr7_1:5612719-5612738 | Msa1006800:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | + | chr7_1:5612798-5612817 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr7_1:5612837-5612856 | Msa1006800:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | - | chr7_1:5612899-5612918 | Msa1006800:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+GGG | - | chr7_1:5612906-5612925 | Msa1006800:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | - | chr7_1:5612986-5613005 | Msa1006800:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | - | chr7_1:5612989-5613008 | Msa1006800:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | + | chr7_1:5613057-5613076 | None:intergenic | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | + | chr7_1:5613058-5613077 | None:intergenic | 35.0% | |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | - | chr7_1:5613110-5613129 | Msa1006800:CDS | 35.0% |
| TAAGACCTATAGTCAATCCT+AGG | + | chr7_1:5613319-5613338 | None:intergenic | 35.0% | |
| ! | ATTTAGTTTACGCATTGCTG+AGG | - | chr7_1:5613522-5613541 | Msa1006800:CDS | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | - | chr7_1:5613711-5613730 | Msa1006800:CDS | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | + | chr7_1:5613808-5613827 | None:intergenic | 35.0% | |
| ! | TCAATTCCGAATAGTTTTCC+AGG | - | chr7_1:5613858-5613877 | Msa1006800:CDS | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr7_1:5613870-5613889 | Msa1006800:CDS | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr7_1:5613871-5613890 | Msa1006800:CDS | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | - | chr7_1:5613883-5613902 | Msa1006800:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr7_1:5614170-5614189 | Msa1006800:intron | 35.0% |
| TAAAGAATCGAACAAGTGAG+TGG | + | chr7_1:5614211-5614230 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | - | chr7_1:5614240-5614259 | Msa1006800:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr7_1:5614241-5614260 | Msa1006800:intron | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | - | chr7_1:5614366-5614385 | Msa1006800:intron | 35.0% | |
| ! | ATGATGATGCTGATAATGAC+GGG | - | chr7_1:5614495-5614514 | Msa1006800:CDS | 35.0% |
| TCCAAAACATCAACATTCGA+AGG | + | chr7_1:5614521-5614540 | None:intergenic | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | + | chr7_1:5614569-5614588 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | - | chr7_1:5614643-5614662 | Msa1006800:CDS | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | - | chr7_1:5614676-5614695 | Msa1006800:CDS | 35.0% |
| TTGAAGATCTTGGAGTTCTT+AGG | - | chr7_1:5614686-5614705 | Msa1006800:CDS | 35.0% | |
| ! | CATTCTTTGAAGACAATACC+TGG | - | chr7_1:5614725-5614744 | Msa1006800:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | + | chr7_1:5614746-5614765 | None:intergenic | 35.0% |
| GATTTCATCTTATCGACAGA+CGG | + | chr7_1:5614788-5614807 | None:intergenic | 35.0% | |
| TGTTCTTGAAGCTGGAAAAA+AGG | - | chr7_1:5614934-5614953 | Msa1006800:CDS | 35.0% | |
| !! | CTTTCTAAAGGTATTCGTAC+AGG | - | chr7_1:5614971-5614990 | Msa1006800:CDS | 35.0% |
| !!! | GCTACTTTTGAAGACTTAGA+TGG | + | chr7_1:5615004-5615023 | None:intergenic | 35.0% |
| TCTTTCTTTGAACTTTGGTG+CGG | + | chr7_1:5615062-5615081 | None:intergenic | 35.0% | |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | + | chr7_1:5615091-5615110 | None:intergenic | 35.0% |
| GGCAGAAATTCCTTATCAAT+CGG | - | chr7_1:5615140-5615159 | Msa1006800:CDS | 35.0% | |
| ! | TGAAGCTTTATCAGTGATTG+TGG | - | chr7_1:5615183-5615202 | Msa1006800:CDS | 35.0% |
| ! | GAAGCTTTATCAGTGATTGT+GGG | - | chr7_1:5615184-5615203 | Msa1006800:CDS | 35.0% |
| TCAGCATGAATCATTGCTAG+GGG | + | chr7_1:5612384-5612403 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | + | chr7_1:5612385-5612404 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | + | chr7_1:5612386-5612405 | None:intergenic | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | - | chr7_1:5612421-5612440 | Msa1006800:exon | 40.0% | |
| GTCTTATGAAGTTATGGGTC+AGG | - | chr7_1:5612905-5612924 | Msa1006800:CDS | 40.0% | |
| ! | GCACAGAGAATCTTCCTTTT+CGG | - | chr7_1:5612937-5612956 | Msa1006800:CDS | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | - | chr7_1:5613299-5613318 | Msa1006800:CDS | 40.0% |
| AACTGCCTAGGATTGACTAT+AGG | - | chr7_1:5613311-5613330 | Msa1006800:CDS | 40.0% | |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | - | chr7_1:5613382-5613401 | Msa1006800:CDS | 40.0% |
| TCACACAAGACAAAATGCCT+AGG | + | chr7_1:5613456-5613475 | None:intergenic | 40.0% | |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | - | chr7_1:5613754-5613773 | Msa1006800:CDS | 40.0% |
| TGGTCTGTATAAATCGTCTG+TGG | + | chr7_1:5613819-5613838 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | - | chr7_1:5613818-5613837 | Msa1006800:CDS | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | + | chr7_1:5614085-5614104 | None:intergenic | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | - | chr7_1:5614087-5614106 | Msa1006800:intron | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr7_1:5614100-5614119 | Msa1006800:intron | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | - | chr7_1:5614122-5614141 | Msa1006800:intron | 40.0% |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr7_1:5614268-5614287 | Msa1006800:intron | 40.0% |
| ! | AGGGGTGTACTTGTTTACAA+CGG | + | chr7_1:5614345-5614364 | None:intergenic | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr7_1:5614416-5614435 | Msa1006800:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr7_1:5614417-5614436 | Msa1006800:intron | 40.0% | |
| ! | GCCTTCGAATGTTGATGTTT+TGG | - | chr7_1:5614517-5614536 | Msa1006800:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+AGG | - | chr7_1:5614642-5614661 | Msa1006800:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | - | chr7_1:5614644-5614663 | Msa1006800:CDS | 40.0% | |
| AAGATCTTGGAGTTCTTAGG+TGG | - | chr7_1:5614689-5614708 | Msa1006800:CDS | 40.0% | |
| ATGAAATCGACCGTCAATGT+TGG | - | chr7_1:5614800-5614819 | Msa1006800:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAC+TGG | + | chr7_1:5614837-5614856 | None:intergenic | 40.0% | |
| GAGGAGTTGCTTCTTTCTAA+AGG | - | chr7_1:5614959-5614978 | Msa1006800:CDS | 40.0% | |
| TTTGAAGACTTAGATGGCGT+CGG | + | chr7_1:5614998-5615017 | None:intergenic | 40.0% | |
| TCTTCAAAAGTAGCTGCTGT+TGG | - | chr7_1:5615010-5615029 | Msa1006800:CDS | 40.0% | |
| !! | TCACTGATTCATGCTGAGAG+TGG | - | chr7_1:5612342-5612361 | Msa1006800:three_prime_UTR | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | + | chr7_1:5612636-5612655 | None:intergenic | 45.0% |
| GAAAAACCTGAGGAAAGGGT+TGG | - | chr7_1:5612690-5612709 | Msa1006800:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | + | chr7_1:5612699-5612718 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr7_1:5612702-5612721 | Msa1006800:CDS | 45.0% |
| CTAAGGTAACACGAATGCTC+TGG | + | chr7_1:5612810-5612829 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | - | chr7_1:5612993-5613012 | Msa1006800:CDS | 45.0% |
| AACACAATAACGCACTAGCC+TGG | + | chr7_1:5613839-5613858 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | + | chr7_1:5613879-5613898 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr7_1:5614099-5614118 | Msa1006800:intron | 45.0% |
| AATCGAACAAGTGAGTGGTC+TGG | + | chr7_1:5614206-5614225 | None:intergenic | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | - | chr7_1:5614259-5614278 | Msa1006800:intron | 45.0% | |
| GTCTTCAGTGCCAACATTGA+CGG | + | chr7_1:5614813-5614832 | None:intergenic | 45.0% | |
| TGAAGCTGGAAAAAAGGCAG+AGG | - | chr7_1:5614940-5614959 | Msa1006800:CDS | 45.0% | |
| TTGAAGACTTAGATGGCGTC+GGG | + | chr7_1:5614997-5615016 | None:intergenic | 45.0% | |
| ! | CTGTTGGTGAAACATCTGCT+GGG | - | chr7_1:5615026-5615045 | Msa1006800:CDS | 45.0% |
| ! | TGTTGGTGAAACATCTGCTG+GGG | - | chr7_1:5615027-5615046 | Msa1006800:CDS | 45.0% |
| ! | TCTTTGAACTTTGGTGCGGT+GGG | + | chr7_1:5615058-5615077 | None:intergenic | 45.0% |
| ! | TTCTTTGAACTTTGGTGCGG+TGG | + | chr7_1:5615059-5615078 | None:intergenic | 45.0% |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | + | chr7_1:5612648-5612667 | None:intergenic | 50.0% |
| GAAGTTATGGGTCAGGGAGT+TGG | - | chr7_1:5612912-5612931 | Msa1006800:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | - | chr7_1:5613890-5613909 | Msa1006800:CDS | 50.0% |
| GAAGGCCTACCTCAGACTTT+AGG | - | chr7_1:5614051-5614070 | Msa1006800:intron | 50.0% | |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | + | chr7_1:5614059-5614078 | None:intergenic | 50.0% |
| GACAAGCCACCTAAAGTCTG+AGG | + | chr7_1:5614063-5614082 | None:intergenic | 50.0% | |
| ATCCCAACAGTCAGCTGATG+CGG | - | chr7_1:5614318-5614337 | Msa1006800:intron | 50.0% | |
| ! | GCTGTTGGTGAAACATCTGC+TGG | - | chr7_1:5615025-5615044 | Msa1006800:CDS | 50.0% |
| GCCAACAACAGACAGTCCAC+AGG | - | chr7_1:5612644-5612663 | Msa1006800:CDS | 55.0% | |
| GTTATGGGTCAGGGAGTTGG+TGG | - | chr7_1:5612915-5612934 | Msa1006800:CDS | 55.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | - | chr7_1:5614054-5614073 | Msa1006800:intron | 55.0% | |
| GACCGCATCAGCTGACTGTT+GGG | + | chr7_1:5614323-5614342 | None:intergenic | 55.0% | |
| CTCGACGGTGTTCTTGAAGC+TGG | - | chr7_1:5614926-5614945 | Msa1006800:CDS | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | + | chr7_1:5614324-5614343 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 5612288 | 5615348 | 5612288 | ID=Msa1006800;Name=Msa1006800 |
| chr7_1 | mRNA | 5612288 | 5615348 | 5612288 | ID=Msa1006800-mRNA-1;Parent=Msa1006800;Name=Msa1006800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|135|818 |
| chr7_1 | exon | 5612288 | 5613948 | 5612288 | ID=Msa1006800-mRNA-1:exon:1823;Parent=Msa1006800-mRNA-1 |
| chr7_1 | exon | 5614418 | 5615348 | 5614418 | ID=Msa1006800-mRNA-1:exon:1822;Parent=Msa1006800-mRNA-1 |
| chr7_1 | CDS | 5614418 | 5615348 | 5614418 | ID=Msa1006800-mRNA-1:cds;Parent=Msa1006800-mRNA-1 |
| chr7_1 | CDS | 5612423 | 5613948 | 5612423 | ID=Msa1006800-mRNA-1:cds;Parent=Msa1006800-mRNA-1 |
| chr7_1 | three_prime_UTR | 5612288 | 5612422 | 5612288 | ID=Msa1006800-mRNA-1:three_prime_utr;Parent=Msa1006800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
