AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1007210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007210 MtrunA17_Chr7g0217581 88.730 488 43 4 1 478 98 583 0.0 861
Msa1007210 MtrunA17_Chr6g0453321 56.112 499 194 9 1 478 1 495 3.42e-172 493
Msa1007210 MtrunA17_Chr4g0042481 42.972 498 227 13 1 476 1 463 4.00e-112 339
Msa1007210 MtrunA17_Chr3g0092111 40.230 522 211 19 1 478 1 465 1.12e-92 289
Msa1007210 MtrunA17_Chr5g0417601 38.241 489 175 17 4 476 2 379 7.26e-69 224
Msa1007210 MtrunA17_Chr8g0355261 35.497 493 237 20 3 477 9 438 5.39e-68 224
Msa1007210 MtrunA17_Chr5g0417561 36.570 484 172 19 4 476 2 361 6.41e-65 214
Msa1007210 MtrunA17_Chr5g0417551 37.370 479 183 20 4 476 2 369 6.52e-65 214
Msa1007210 MtrunA17_Chr7g0254161 36.410 390 166 15 79 431 49 393 1.28e-49 175
Msa1007210 MtrunA17_Chr5g0417571 41.434 251 120 7 6 239 4 244 2.42e-40 147
Msa1007210 MtrunA17_Chr6g0460731 32.258 403 160 15 2 365 7 335 2.53e-39 145
Msa1007210 MtrunA17_Chr6g0460721 63.158 95 35 0 96 190 48 142 1.74e-36 137
Msa1007210 MtrunA17_Chr2g0283811 83.333 60 10 0 131 190 41 100 3.17e-33 123
Msa1007210 MtrunA17_Chr3g0127201 66.667 60 20 0 134 193 24 83 1.03e-24 103
Msa1007210 MtrunA17_Chr8g0374111 68.966 58 18 0 137 194 29 86 1.89e-24 101
Msa1007210 MtrunA17_Chr2g0326001 59.211 76 25 1 115 190 24 93 3.58e-24 102
Msa1007210 MtrunA17_Chr8g0346551 66.102 59 20 0 132 190 19 77 3.97e-24 101
Msa1007210 MtrunA17_Chr8g0374251 75.472 53 13 0 139 191 70 122 4.42e-24 103
Msa1007210 MtrunA17_Chr1g0177251 59.211 76 30 1 132 206 6 81 5.64e-24 101
Msa1007210 MtrunA17_Chr4g0061761 71.698 53 15 0 135 187 38 90 5.80e-24 102
Msa1007210 MtrunA17_Chr8g0341671 73.077 52 14 0 137 188 20 71 7.69e-24 99.4
Msa1007210 MtrunA17_Chr4g0010151 61.290 62 24 0 129 190 74 135 1.07e-23 102
Msa1007210 MtrunA17_Chr2g0308011 75.510 49 12 0 137 185 37 85 1.10e-23 99.0
Msa1007210 MtrunA17_Chr4g0047001 47.222 108 41 3 94 190 6 108 1.23e-23 102
Msa1007210 MtrunA17_Chr7g0223311 41.176 119 68 2 87 204 28 145 2.05e-23 101
Msa1007210 MtrunA17_Chr2g0328021 66.667 57 19 0 139 195 64 120 2.18e-23 99.8
Msa1007210 MtrunA17_Chr8g0367161 53.425 73 34 0 118 190 13 85 5.03e-23 99.8
Msa1007210 MtrunA17_Chr4g0030051 66.154 65 21 1 126 189 29 93 5.41e-23 99.0
Msa1007210 MtrunA17_Chr3g0126201 68.421 57 17 1 135 190 48 104 7.73e-23 99.4
Msa1007210 MtrunA17_Chr1g0188851 67.925 53 17 0 137 189 43 95 9.81e-23 98.2
Msa1007210 MtrunA17_Chr4g0031411 63.333 60 22 0 130 189 68 127 1.41e-22 98.6
Msa1007210 MtrunA17_Chr2g0282051 74.074 54 13 1 137 190 46 98 6.14e-22 95.5
Msa1007210 MtrunA17_Chr5g0411951 65.455 55 19 0 133 187 39 93 9.07e-22 96.3
Msa1007210 MtrunA17_Chr2g0282441 72.000 50 14 0 139 188 27 76 1.25e-21 95.9
Msa1007210 MtrunA17_Chr2g0282511 73.469 49 13 0 137 185 45 93 1.78e-21 94.7
Msa1007210 MtrunA17_Chr7g0237921 69.231 52 16 0 139 190 78 129 2.05e-21 95.5
Msa1007210 MtrunA17_Chr4g0047761 69.231 52 16 0 139 190 74 125 2.12e-21 94.7
Msa1007210 MtrunA17_Chr3g0117601 59.091 66 26 1 123 187 46 111 3.88e-21 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007210 AT5G39660.3 40.936 513 205 18 6 478 3 457 3.28e-91 285
Msa1007210 AT5G39660.1 40.936 513 205 18 6 478 3 457 3.28e-91 285
Msa1007210 AT5G39660.2 40.936 513 205 18 6 478 3 457 3.28e-91 285
Msa1007210 AT3G47500.1 40.606 495 225 23 1 476 2 446 7.11e-82 261
Msa1007210 AT1G69570.1 33.671 493 214 20 1 477 1 396 7.13e-51 178
Msa1007210 AT1G26790.1 31.884 483 205 24 1 477 7 371 2.49e-38 144
Msa1007210 AT5G62430.1 57.895 114 44 2 103 215 20 130 1.47e-36 137
Msa1007210 AT5G62430.1 49.057 106 34 4 375 476 207 296 3.22e-16 79.7
Msa1007210 AT1G29160.1 85.000 60 9 0 131 190 56 115 7.50e-35 128
Msa1007210 AT2G34140.1 81.667 60 11 0 131 190 52 111 4.96e-33 123
Msa1007210 AT5G60200.1 58.333 72 30 0 133 204 51 122 1.91e-25 105
Msa1007210 AT5G60850.1 73.214 56 15 0 137 192 51 106 6.64e-25 105
Msa1007210 AT3G45610.1 45.263 95 52 0 102 196 5 99 6.94e-25 103
Msa1007210 AT1G51700.1 68.421 57 18 0 137 193 33 89 2.19e-24 100
Msa1007210 AT3G61850.2 60.870 69 27 0 125 193 50 118 3.01e-24 102
Msa1007210 AT3G61850.3 60.870 69 27 0 125 193 50 118 3.01e-24 102
Msa1007210 AT3G61850.1 60.870 69 27 0 125 193 62 130 3.47e-24 102
Msa1007210 AT3G61850.5 60.870 69 27 0 125 193 50 118 4.91e-24 102
Msa1007210 AT3G61850.4 60.870 69 27 0 125 193 62 130 5.64e-24 102
Msa1007210 AT3G50410.1 68.966 58 18 0 137 194 30 87 8.52e-24 100
Msa1007210 AT3G55370.1 65.000 60 21 0 133 192 72 131 1.36e-23 101
Msa1007210 AT3G21270.1 73.585 53 14 0 137 189 29 81 1.65e-23 98.6
Msa1007210 AT3G55370.2 65.000 60 21 0 133 192 72 131 1.68e-23 102
Msa1007210 AT3G55370.3 65.000 60 21 0 133 192 117 176 1.70e-23 102
Msa1007210 AT4G24060.1 68.421 57 18 0 134 190 50 106 1.73e-23 101
Msa1007210 AT2G28510.1 67.797 59 19 0 139 197 50 108 1.94e-23 100
Msa1007210 AT1G07640.1 68.333 60 18 1 139 197 23 82 2.21e-23 100
Msa1007210 AT1G07640.2 68.333 60 18 1 139 197 79 138 3.23e-23 100
Msa1007210 AT1G07640.3 68.333 60 18 1 139 197 87 146 4.28e-23 100
Msa1007210 AT4G38000.1 55.844 77 29 2 136 211 40 112 5.21e-23 98.2
Msa1007210 AT2G37590.1 56.061 66 29 0 125 190 77 142 6.12e-23 99.8
Msa1007210 AT2G28810.2 62.295 61 23 0 128 188 68 128 6.35e-23 99.8
Msa1007210 AT5G66940.1 35.393 178 90 6 137 291 32 207 7.87e-23 97.1
Msa1007210 AT2G28810.1 62.295 61 23 0 128 188 85 145 9.34e-23 99.4
Msa1007210 AT1G28310.1 72.222 54 15 0 137 190 27 80 1.19e-22 98.6
Msa1007210 AT5G65590.1 54.321 81 30 1 112 192 23 96 1.65e-22 98.2
Msa1007210 AT1G28310.2 72.222 54 15 0 137 190 51 104 1.94e-22 98.6
Msa1007210 AT1G64620.1 67.308 52 17 0 134 185 46 97 2.91e-22 98.2
Msa1007210 AT3G52440.1 57.353 68 28 1 135 201 22 89 4.12e-22 95.9
Msa1007210 AT1G21340.1 64.286 56 20 0 139 194 40 95 4.60e-22 95.9
Msa1007210 AT3G52440.2 57.353 68 28 1 135 201 41 108 5.52e-22 95.9
Msa1007210 AT1G47655.1 71.429 49 14 0 137 185 29 77 1.41e-21 93.2
Msa1007210 AT4G00940.1 64.407 59 21 0 132 190 63 121 1.42e-21 95.1
Msa1007210 AT4G00940.3 64.407 59 21 0 132 190 63 121 1.42e-21 95.1
Msa1007210 AT4G00940.2 64.407 59 21 0 132 190 63 121 1.42e-21 95.1
Msa1007210 AT5G02460.1 63.793 58 21 0 133 190 91 148 2.06e-21 96.7
Msa1007210 AT2G46590.1 42.268 97 55 1 88 184 20 115 3.57e-21 95.1
Msa1007210 AT2G46590.2 42.268 97 55 1 88 184 32 127 4.55e-21 95.1
Msa1007210 AT4G21050.1 58.209 67 28 0 124 190 11 77 7.26e-21 91.3
Msa1007210 AT5G62940.1 71.429 49 14 0 139 187 75 123 3.66e-20 92.4
Msa1007210 AT4G21040.1 62.264 53 20 0 139 191 27 79 2.50e-18 84.3
Msa1007210 AT4G21080.1 60.377 53 21 0 139 191 27 79 1.36e-17 82.8
Msa1007210 AT4G21030.1 59.091 44 18 0 139 182 23 66 1.73e-11 63.9

Find 137 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTTAGTTGAAACTTTA+TGG 0.068102 7_1:+6612308 Msa1007210:three_prime_UTR
CATTCTATCCTGCAACTTAT+TGG 0.150210 7_1:+6611453 Msa1007210:CDS
CTTCGTAACCACTTATATTT+TGG 0.156560 7_1:+6611879 Msa1007210:exon
CTAATCTGGCTTGGTTTATT+AGG 0.170341 7_1:+6612280 Msa1007210:three_prime_UTR
CCAACATGAATTTCTGAAAT+AGG 0.172204 7_1:-6609213 None:intergenic
ATTCTATCCTGCAACTTATT+GGG 0.232977 7_1:+6611454 Msa1007210:CDS
CTGAACAAGAACCACATTAA+TGG 0.264740 7_1:+6612075 Msa1007210:three_prime_UTR
GGGTTCAATTTGTACTTTCC+TGG 0.266809 7_1:+6612217 Msa1007210:three_prime_UTR
TTCTCCGAGAGGCCTCTTTC+AGG 0.291707 7_1:+6611754 Msa1007210:CDS
TTACCTAAGGTTGGAGAGTT+TGG 0.298324 7_1:-6611557 None:intergenic
GCAAGAACTGCCAGAGATAT+TGG 0.302290 7_1:+6610940 Msa1007210:CDS
TGTCTCGTCCTGTTCTTCTT+TGG 0.312769 7_1:-6610793 None:intergenic
CTCTTAGATGTATATAAATA+AGG 0.319140 7_1:+6612177 Msa1007210:three_prime_UTR
AAAAGAATGATGTTGTAAAA+AGG 0.349191 7_1:-6609087 None:intergenic
GAGAGTTTGGAGTAGAGTTA+TGG 0.354122 7_1:-6611544 None:intergenic
GACTCTGCGATCAAACTGTT+TGG 0.377035 7_1:+6609180 Msa1007210:CDS
CAATGTAGCAACCTCCCTTT+CGG 0.382427 7_1:-6610757 None:intergenic
GCCAACCGAACAGAAGAAAA+AGG 0.384313 7_1:+6612025 Msa1007210:three_prime_UTR
ATCCTCCCCTTGTTCTTCAC+TGG 0.395303 7_1:-6611219 None:intergenic
GTGCAAAATTACACAAGAAA+TGG 0.400392 7_1:+6611155 Msa1007210:CDS
AGCTCCTTCTGGACAACACT+TGG 0.400787 7_1:+6611704 Msa1007210:CDS
TGCACCTTCCGTCGACTTTG+TGG 0.406190 7_1:-6611267 None:intergenic
CCTTGTTCTTCACTGGTATG+AGG 0.408705 7_1:-6611212 None:intergenic
TATATACATCTAAGAGGTCT+TGG 0.409722 7_1:-6612170 None:intergenic
TTGGTTGTGTCAAACTGATT+TGG 0.417829 7_1:+6611913 Msa1007210:three_prime_UTR
AAGCAACACTTCAGAATTCT+CGG 0.418619 7_1:+6611030 Msa1007210:CDS
AACGGTACAATCCTTACATT+TGG 0.421611 7_1:+6611074 Msa1007210:CDS
TTATATATACATGAACTAAC+AGG 0.424598 7_1:-6612110 None:intergenic
TCAGTTCTAGAAGTTGCATC+TGG 0.425578 7_1:-6610711 None:intergenic
TCATTGACTCTAATCTGGCT+TGG 0.431622 7_1:+6612271 Msa1007210:three_prime_UTR
CAAAAGGCCGGTGGTGGAAT+CGG 0.434743 7_1:-6611410 None:intergenic
TTCAAAGACCAAAGAAGAAC+AGG 0.435355 7_1:+6610785 Msa1007210:CDS
GTACAACCCCAATAAGTTGC+AGG 0.438881 7_1:-6611461 None:intergenic
CAACCTTAGGTAAACATTCA+AGG 0.440030 7_1:+6611567 Msa1007210:CDS
TGTGGTTTCCTAAAACTTTG+AGG 0.440466 7_1:+6611654 Msa1007210:CDS
TCATGAATCCAGAACACAAC+GGG 0.441078 7_1:+6610621 Msa1007210:intron
CCTAGACAATGCCGCCGGAT+TGG 0.441868 7_1:-6611837 None:intergenic
GAGTTATGGTTTGCACCATT+CGG 0.443392 7_1:-6611530 None:intergenic
TTTCTGCGACCGGCACCTAC+TGG 0.444047 7_1:-6610990 None:intergenic
CTTGAATGTTTACCTAAGGT+TGG 0.445781 7_1:-6611566 None:intergenic
CACCTTGTGGTGGGAAGCTA+TGG 0.449902 7_1:-6611328 None:intergenic
TTCAGTCTTGCAAGCCAATC+CGG 0.451150 7_1:+6611823 Msa1007210:CDS
GGAAAATCCTGGTGGACAAA+AGG 0.457509 7_1:-6611426 None:intergenic
GTCCCTTGAATGTTTACCTA+AGG 0.465896 7_1:-6611570 None:intergenic
TTCTATCCTGCAACTTATTG+GGG 0.466905 7_1:+6611455 Msa1007210:CDS
TTTAGTTGAAACTTTATGGC+TGG 0.467066 7_1:+6612312 Msa1007210:three_prime_UTR
CACAATTACCAAAATATAAG+TGG 0.467301 7_1:-6611887 None:intergenic
CACCGGCAGTCCAATATCTC+TGG 0.470878 7_1:-6610950 None:intergenic
GCAGTTCTTGCAGAAATGAC+GGG 0.478653 7_1:-6610928 None:intergenic
GATTGTACCGTTGCATTTCA+AGG 0.479174 7_1:-6611063 None:intergenic
CAATAAGTTGCAGGATAGAA+TGG 0.479650 7_1:-6611452 None:intergenic
TTGGCATTTACCATGGAATC+CGG 0.481674 7_1:+6611373 Msa1007210:CDS
CTTATTTATATACATCTAAG+AGG 0.488347 7_1:-6612176 None:intergenic
CTCATTTGCACCGGATTCCA+TGG 0.490692 7_1:-6611383 None:intergenic
GGTGGACAAAAGGCCGGTGG+TGG 0.498700 7_1:-6611416 None:intergenic
ACTTTCCTCATGGAACTCCT+TGG 0.498742 7_1:+6611354 Msa1007210:CDS
ACTCCAAACTCTCCAACCTT+AGG 0.503480 7_1:+6611554 Msa1007210:CDS
TAATGTGGTTCTTGTTCAGT+TGG 0.504875 7_1:-6612071 None:intergenic
GGCAGTTCTTGCAGAAATGA+CGG 0.505612 7_1:-6610929 None:intergenic
AAGGATAAGAATAAGAATGA+GGG 0.506790 7_1:+6612196 Msa1007210:three_prime_UTR
ATCGGTGTGCTCATTTGCAC+CGG 0.511965 7_1:-6611392 None:intergenic
CGTGGAATGTTCCATGCACT+TGG 0.517020 7_1:-6611488 None:intergenic
CCTATTTCAGAAATTCATGT+TGG 0.517045 7_1:+6609213 Msa1007210:CDS
GTGAGTTGGATCCAAATGTA+AGG 0.517691 7_1:-6611085 None:intergenic
AGCTTGTTCTTGAGATACAT+TGG 0.519714 7_1:-6611294 None:intergenic
AATCCCAAGTGTTGTCCAGA+AGG 0.521719 7_1:-6611708 None:intergenic
TTGTCCTCGTTGTAGTAGCA+TGG 0.523986 7_1:+6610863 Msa1007210:CDS
TGCCAGAGATATTGGACTGC+CGG 0.524544 7_1:+6610948 Msa1007210:CDS
ACCTACTGGTACGTTTCTCA+TGG 0.524953 7_1:-6610976 None:intergenic
TACCGTTGCATTTCAAGGAA+GGG 0.526711 7_1:-6611058 None:intergenic
TAAGGATAAGAATAAGAATG+AGG 0.530067 7_1:+6612195 Msa1007210:three_prime_UTR
TACGTTTCTCATGGTTCCAC+CGG 0.531107 7_1:-6610967 None:intergenic
GAGCACACCGATTCCACCAC+CGG 0.531488 7_1:+6611403 Msa1007210:CDS
TGAATCACATAAAGGTGAGT+TGG 0.531921 7_1:-6611099 None:intergenic
GATGCCACTGAATCACATAA+AGG 0.533836 7_1:-6611107 None:intergenic
GTACCGTTGCATTTCAAGGA+AGG 0.535966 7_1:-6611059 None:intergenic
TCTTGCAGAAATGACGGGGT+TGG 0.542522 7_1:-6610923 None:intergenic
TTGAAGGGAATGCCTGAAAG+AGG 0.554322 7_1:-6611766 None:intergenic
TTTGCACCATTCGGTGATGA+TGG 0.555092 7_1:-6611521 None:intergenic
GCTCCTTCTGGACAACACTT+GGG 0.555197 7_1:+6611705 Msa1007210:CDS
AATGCCTGAAAGAGGCCTCT+CGG 0.561163 7_1:-6611758 None:intergenic
TAGAATGGCATGGAAAATCC+TGG 0.562002 7_1:-6611437 None:intergenic
AACCTTAGGTAAACATTCAA+GGG 0.566427 7_1:+6611568 Msa1007210:CDS
CAAGGTGGCTACTTTCCTCA+TGG 0.567490 7_1:+6611344 Msa1007210:CDS
CACCCTTCCTTGAAATGCAA+CGG 0.569292 7_1:+6611056 Msa1007210:CDS
TTGTTCTTGAGATACATTGG+TGG 0.575585 7_1:-6611291 None:intergenic
GAACTCCTTGGCATTTACCA+TGG 0.576696 7_1:+6611366 Msa1007210:CDS
CAAGAACAAGCTATGTGGAA+TGG 0.577149 7_1:+6611305 Msa1007210:CDS
CTCACCTTTATGTGATTCAG+TGG 0.580504 7_1:+6611103 Msa1007210:CDS
ATTCTTCTGTTGATTGTGCA+AGG 0.584727 7_1:-6610680 None:intergenic
TATCTCAAGAACAAGCTATG+TGG 0.592377 7_1:+6611300 Msa1007210:CDS
TGTTACAGTATCCACCGAAA+GGG 0.593158 7_1:+6610743 Msa1007210:CDS
CAAGTGCATGGAACATTCCA+CGG 0.594597 7_1:+6611489 Msa1007210:CDS
CCTCATACCAGTGAAGAACA+AGG 0.595660 7_1:+6611212 Msa1007210:CDS
GGCCATAGCTTCCCACCACA+AGG 0.598341 7_1:+6611326 Msa1007210:CDS
CATTATGAAAGAAAGAAGCC+AGG 0.602999 7_1:-6612235 None:intergenic
AATCCTGGTGGACAAAAGGC+CGG 0.603585 7_1:-6611422 None:intergenic
GGAAAGTAGCCACCTTGTGG+TGG 0.603675 7_1:-6611338 None:intergenic
ACCTTCCGTCGACTTTGTGG+AGG 0.610776 7_1:-6611264 None:intergenic
GGATTCCATGGTAAATGCCA+AGG 0.611774 7_1:-6611371 None:intergenic
CTGTTACAGTATCCACCGAA+AGG 0.612746 7_1:+6610742 Msa1007210:CDS
CTAAAATCAAGCGAAGGAGA+TGG 0.613491 7_1:+6611602 Msa1007210:CDS
TGTAGCAACCTCCCTTTCGG+TGG 0.614289 7_1:-6610754 None:intergenic
TTAGCGAAGAAAAGAGCTTG+TGG 0.614398 7_1:+6611636 Msa1007210:CDS
GAAAGTAGCCACCTTGTGGT+GGG 0.619044 7_1:-6611337 None:intergenic
GATGATGGCTGTGCTTGCCG+TGG 0.619494 7_1:-6611506 None:intergenic
TTTGAGGATTGATGACTCTG+AGG 0.623626 7_1:+6611670 Msa1007210:CDS
ATGCTACTACAACGAGGACA+AGG 0.624918 7_1:-6610861 None:intergenic
AGTTGCAGGATAGAATGGCA+TGG 0.625575 7_1:-6611447 None:intergenic
CAGTTCTTGCAGAAATGACG+GGG 0.628674 7_1:-6610927 None:intergenic
GTTGTACTATGCCAAGTGCA+TGG 0.629999 7_1:+6611477 Msa1007210:CDS
GCCTCTCGGAGAAACTGAGT+CGG 0.630302 7_1:-6611744 None:intergenic
ACAAGAATGCTCCATTAATG+TGG 0.631067 7_1:-6612086 None:intergenic
TACCAGTGAAGAACAAGGGG+AGG 0.634191 7_1:+6611217 Msa1007210:CDS
TACAGTATCCACCGAAAGGG+AGG 0.634842 7_1:+6610746 Msa1007210:CDS
ACCTCCACAAAGTCGACGGA+AGG 0.636006 7_1:+6611263 Msa1007210:CDS
ACAAGAACATGAGATTGAGA+AGG 0.637128 7_1:+6609326 Msa1007210:CDS
AGGATAAGAATAAGAATGAG+GGG 0.637694 7_1:+6612197 Msa1007210:three_prime_UTR
CTCATACCAGTGAAGAACAA+GGG 0.644364 7_1:+6611213 Msa1007210:CDS
TCATACCAGTGAAGAACAAG+GGG 0.646136 7_1:+6611214 Msa1007210:CDS
TGAGGAAAGTAGCCACCTTG+TGG 0.648868 7_1:-6611341 None:intergenic
AGAAACGTACCAGTAGGTGC+CGG 0.653444 7_1:+6610981 Msa1007210:CDS
AACATGCTAAAATCAAGCGA+AGG 0.656868 7_1:+6611596 Msa1007210:CDS
AGTTACCTCCACAAAGTCGA+CGG 0.659219 7_1:+6611259 Msa1007210:CDS
CAGAGATATTGGACTGCCGG+TGG 0.661022 7_1:+6610951 Msa1007210:CDS
GCACAGCCATCATCACCGAA+TGG 0.664049 7_1:+6611515 Msa1007210:CDS
GCTACAAATTAACAAGACTG+AGG 0.666992 7_1:-6611988 None:intergenic
CCTGGTGGACAAAAGGCCGG+TGG 0.693492 7_1:-6611419 None:intergenic
ACCGACTCAGTTTCTCCGAG+AGG 0.698600 7_1:+6611743 Msa1007210:CDS
ACCATGAGAAACGTACCAGT+AGG 0.705884 7_1:+6610975 Msa1007210:CDS
GGACGAGACAAGTAACACAC+AGG 0.712817 7_1:+6610806 Msa1007210:CDS
AATGGCATGGAAAATCCTGG+TGG 0.713044 7_1:-6611434 None:intergenic
CATAGCTTCCCACCACAAGG+TGG 0.714183 7_1:+6611329 Msa1007210:CDS
AGTCTTGCAAGCCAATCCGG+CGG 0.717524 7_1:+6611826 Msa1007210:CDS
AAATGCCAAGGAGTTCCATG+AGG 0.739950 7_1:-6611359 None:intergenic
TTCATGAATCCAGAACACAA+CGG 0.740548 7_1:+6610620 Msa1007210:intron
GTGTCCATGCTACTACAACG+AGG 0.808267 7_1:-6610867 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGAGAATTTTGATTTTT+TGG + chr7_1:6609356-6609375 Msa1007210:intron 15.0%
!!! AATAATTTTTTCACTTTTCA+AGG + chr7_1:6609545-6609564 Msa1007210:intron 15.0%
!! TTAAACTACATAGTATAATT+TGG - chr7_1:6609639-6609658 None:intergenic 15.0%
!!! TAAGTTTTTGAAGTTATATT+TGG + chr7_1:6609656-6609675 Msa1007210:intron 15.0%
!! TTTATTTCATATACCAAATA+AGG - chr7_1:6609722-6609741 None:intergenic 15.0%
!!! TTCTTTTTATGATATTAATG+TGG + chr7_1:6610550-6610569 Msa1007210:intron 15.0%
!! ATTATTTAGTTGAAACTTTA+TGG + chr7_1:6612308-6612327 Msa1007210:three_prime_UTR 15.0%
!! AAAAGAATGATGTTGTAAAA+AGG - chr7_1:6609090-6609109 None:intergenic 20.0%
!! ATTCTTCCATTTCAAATAAA+GGG - chr7_1:6609409-6609428 None:intergenic 20.0%
!! TATTCTTCCATTTCAAATAA+AGG - chr7_1:6609410-6609429 None:intergenic 20.0%
!! TGAAATGGAAGAATATTTAA+TGG + chr7_1:6609415-6609434 Msa1007210:intron 20.0%
!! GAAATGGAAGAATATTTAAT+GGG + chr7_1:6609416-6609435 Msa1007210:intron 20.0%
!! ATTGAAAGAATTACCTTATT+TGG + chr7_1:6609706-6609725 Msa1007210:intron 20.0%
!!! AAATCATGTTAGTTTATGTT+CGG - chr7_1:6610015-6610034 None:intergenic 20.0%
!! TTTATTGCGAAAAAAACATT+TGG - chr7_1:6610418-6610437 None:intergenic 20.0%
!! CATGAATAAATACTAATCTT+TGG + chr7_1:6610595-6610614 Msa1007210:intron 20.0%
!!! TATTTTGGTAATTGTGTTTT+TGG + chr7_1:6611894-6611913 Msa1007210:three_prime_UTR 20.0%
!! TTATATATACATGAACTAAC+AGG - chr7_1:6612113-6612132 None:intergenic 20.0%
!! CTTATTTATATACATCTAAG+AGG - chr7_1:6612179-6612198 None:intergenic 20.0%
!! CTCTTAGATGTATATAAATA+AGG + chr7_1:6612177-6612196 Msa1007210:three_prime_UTR 20.0%
!!! GTTTTTAGCAACAAAAATGT+TGG + chr7_1:6609149-6609168 Msa1007210:exon 25.0%
!! TTATGACCCTTTATTTGAAA+TGG + chr7_1:6609400-6609419 Msa1007210:intron 25.0%
!!! AAAATTCATTTGACTTGCTT+TGG + chr7_1:6609464-6609483 Msa1007210:intron 25.0%
!! ATTTTGGATTGTTTTCAATC+TGG + chr7_1:6609582-6609601 Msa1007210:intron 25.0%
!! TTTTGGATTGTTTTCAATCT+GGG + chr7_1:6609583-6609602 Msa1007210:intron 25.0%
!! TTTGAAGTTATATTTGGCTT+TGG + chr7_1:6609662-6609681 Msa1007210:intron 25.0%
!!! GGTGAAGTTTTATTTTTTCA+TGG + chr7_1:6609683-6609702 Msa1007210:intron 25.0%
!!! CTTTTTCTTGTTTGACTTTT+GGG + chr7_1:6610047-6610066 Msa1007210:intron 25.0%
!!! TTTGACTTTTGGGTTTTATA+TGG + chr7_1:6610057-6610076 Msa1007210:intron 25.0%
!!! TTTAAAATTCGACAGTTTTC+TGG - chr7_1:6610095-6610114 None:intergenic 25.0%
!!! AACTGTCGAATTTTAAAAAC+TGG + chr7_1:6610098-6610117 Msa1007210:intron 25.0%
! CACAATTACCAAAATATAAG+TGG - chr7_1:6611890-6611909 None:intergenic 25.0%
! TAAGGATAAGAATAAGAATG+AGG + chr7_1:6612195-6612214 Msa1007210:three_prime_UTR 25.0%
! AAGGATAAGAATAAGAATGA+GGG + chr7_1:6612196-6612215 Msa1007210:three_prime_UTR 25.0%
!! CCAACATGAATTTCTGAAAT+AGG - chr7_1:6609216-6609235 None:intergenic 30.0%
CCTATTTCAGAAATTCATGT+TGG + chr7_1:6609213-6609232 Msa1007210:CDS 30.0%
!! GGAGTTTCAATGTTTGATTT+TGG + chr7_1:6609566-6609585 Msa1007210:intron 30.0%
! GAAGCTATTGAAAGTGATTT+TGG + chr7_1:6609887-6609906 Msa1007210:intron 30.0%
TTAGTTTATGTTCGGAATCA+CGG - chr7_1:6610007-6610026 None:intergenic 30.0%
!! GCTTTTTCTTGTTTGACTTT+TGG + chr7_1:6610046-6610065 Msa1007210:intron 30.0%
CACAAACTGATACAAAAACA+AGG + chr7_1:6610286-6610305 Msa1007210:intron 30.0%
TCGAATAAAAAGAACGAAGA+TGG + chr7_1:6610654-6610673 Msa1007210:CDS 30.0%
GTGCAAAATTACACAAGAAA+TGG + chr7_1:6611155-6611174 Msa1007210:CDS 30.0%
ATTCTATCCTGCAACTTATT+GGG + chr7_1:6611454-6611473 Msa1007210:CDS 30.0%
AACCTTAGGTAAACATTCAA+GGG + chr7_1:6611568-6611587 Msa1007210:CDS 30.0%
! TCATCAATCCTCAAAGTTTT+AGG - chr7_1:6611665-6611684 None:intergenic 30.0%
! CTTCGTAACCACTTATATTT+TGG + chr7_1:6611879-6611898 Msa1007210:exon 30.0%
! TTTGTGATTTTCTCGTGAAA+AGG - chr7_1:6611949-6611968 None:intergenic 30.0%
TATATACATCTAAGAGGTCT+TGG - chr7_1:6612173-6612192 None:intergenic 30.0%
AGGATAAGAATAAGAATGAG+GGG + chr7_1:6612197-6612216 Msa1007210:three_prime_UTR 30.0%
!!! GTTTTTCATTGACTCTAATC+TGG + chr7_1:6612266-6612285 Msa1007210:three_prime_UTR 30.0%
TTTAGTTGAAACTTTATGGC+TGG + chr7_1:6612312-6612331 Msa1007210:three_prime_UTR 30.0%
ACAAGAACATGAGATTGAGA+AGG + chr7_1:6609326-6609345 Msa1007210:CDS 35.0%
ACCTTGTTGATGCTAGAATT+AGG + chr7_1:6609865-6609884 Msa1007210:intron 35.0%
TCCTAATTCTAGCATCAACA+AGG - chr7_1:6609869-6609888 None:intergenic 35.0%
!! AAAGTGATTTTGGTAAGTCG+CGG + chr7_1:6609897-6609916 Msa1007210:intron 35.0%
TTCACGAAATCATGGTAACA+CGG - chr7_1:6609979-6609998 None:intergenic 35.0%
! ATTCGACAGTTTTCTGGATT+TGG - chr7_1:6610089-6610108 None:intergenic 35.0%
! TCAGTTTTACTCAATTCCCT+TGG + chr7_1:6610174-6610193 Msa1007210:intron 35.0%
AATTCCCTTGGTTTAATGTC+TGG + chr7_1:6610186-6610205 Msa1007210:intron 35.0%
AACACCAGACATTAAACCAA+GGG - chr7_1:6610193-6610212 None:intergenic 35.0%
AAACACCAGACATTAAACCA+AGG - chr7_1:6610194-6610213 None:intergenic 35.0%
TTAATGTCTGGTGTTTGTGT+CGG + chr7_1:6610198-6610217 Msa1007210:intron 35.0%
TCGAATGATAGGATCCAATT+TGG - chr7_1:6610247-6610266 None:intergenic 35.0%
GTTAGGAAACATCGAATGAT+AGG - chr7_1:6610258-6610277 None:intergenic 35.0%
CAGTTTGTGTAGAATCTGTT+AGG - chr7_1:6610275-6610294 None:intergenic 35.0%
CATTAGCAGTAGACTCAATA+TGG - chr7_1:6610328-6610347 None:intergenic 35.0%
TTCATGAATCCAGAACACAA+CGG + chr7_1:6610620-6610639 Msa1007210:intron 35.0%
! ATTCTTCTGTTGATTGTGCA+AGG - chr7_1:6610683-6610702 None:intergenic 35.0%
TTCAAAGACCAAAGAAGAAC+AGG + chr7_1:6610785-6610804 Msa1007210:CDS 35.0%
! CTATTTTGTCCGGTTTTTTG+AGG - chr7_1:6610839-6610858 None:intergenic 35.0%
AAGCAACACTTCAGAATTCT+CGG + chr7_1:6611030-6611049 Msa1007210:CDS 35.0%
AACGGTACAATCCTTACATT+TGG + chr7_1:6611074-6611093 Msa1007210:CDS 35.0%
TGAATCACATAAAGGTGAGT+TGG - chr7_1:6611102-6611121 None:intergenic 35.0%
TTGTTCTTGAGATACATTGG+TGG - chr7_1:6611294-6611313 None:intergenic 35.0%
! AGCTTGTTCTTGAGATACAT+TGG - chr7_1:6611297-6611316 None:intergenic 35.0%
TATCTCAAGAACAAGCTATG+TGG + chr7_1:6611300-6611319 Msa1007210:CDS 35.0%
CAATAAGTTGCAGGATAGAA+TGG - chr7_1:6611455-6611474 None:intergenic 35.0%
CATTCTATCCTGCAACTTAT+TGG + chr7_1:6611453-6611472 Msa1007210:CDS 35.0%
TTCTATCCTGCAACTTATTG+GGG + chr7_1:6611455-6611474 Msa1007210:CDS 35.0%
CTTGAATGTTTACCTAAGGT+TGG - chr7_1:6611569-6611588 None:intergenic 35.0%
CAACCTTAGGTAAACATTCA+AGG + chr7_1:6611567-6611586 Msa1007210:CDS 35.0%
AACATGCTAAAATCAAGCGA+AGG + chr7_1:6611596-6611615 Msa1007210:CDS 35.0%
TGTGGTTTCCTAAAACTTTG+AGG + chr7_1:6611654-6611673 Msa1007210:CDS 35.0%
! TTTTCTCGTCACACTTTGAA+GGG - chr7_1:6611784-6611803 None:intergenic 35.0%
! TTTTTCTCGTCACACTTTGA+AGG - chr7_1:6611785-6611804 None:intergenic 35.0%
TTGGTTGTGTCAAACTGATT+TGG + chr7_1:6611913-6611932 Msa1007210:three_prime_UTR 35.0%
GCTACAAATTAACAAGACTG+AGG - chr7_1:6611991-6612010 None:intergenic 35.0%
! ACCAACCTTTTTCTTCTGTT+CGG - chr7_1:6612033-6612052 None:intergenic 35.0%
TAATGTGGTTCTTGTTCAGT+TGG - chr7_1:6612074-6612093 None:intergenic 35.0%
CTGAACAAGAACCACATTAA+TGG + chr7_1:6612075-6612094 Msa1007210:three_prime_UTR 35.0%
ACAAGAATGCTCCATTAATG+TGG - chr7_1:6612089-6612108 None:intergenic 35.0%
CATTATGAAAGAAAGAAGCC+AGG - chr7_1:6612238-6612257 None:intergenic 35.0%
!! CTAATCTGGCTTGGTTTATT+AGG + chr7_1:6612280-6612299 Msa1007210:three_prime_UTR 35.0%
GAACTGAGAGTTACAAGAGT+TGG - chr7_1:6609835-6609854 None:intergenic 40.0%
ACTCTTGTAACTCTCAGTTC+AGG + chr7_1:6609835-6609854 Msa1007210:intron 40.0%
TAGTAAAAGCCACACTTTCG+AGG + chr7_1:6609934-6609953 Msa1007210:intron 40.0%
TTTGTTGAACCTCGAAAGTG+TGG - chr7_1:6609946-6609965 None:intergenic 40.0%
CGGTGAATTTCACGAAATCA+TGG - chr7_1:6609987-6610006 None:intergenic 40.0%
GGAATCTGCTCAAAGATGTT+AGG - chr7_1:6610124-6610143 None:intergenic 40.0%
GGGGATTAACTCATCCAAAT+TGG + chr7_1:6610230-6610249 Msa1007210:intron 40.0%
TCATGAATCCAGAACACAAC+GGG + chr7_1:6610621-6610640 Msa1007210:intron 40.0%
!! TCAGTTCTAGAAGTTGCATC+TGG - chr7_1:6610714-6610733 None:intergenic 40.0%
TGTTACAGTATCCACCGAAA+GGG + chr7_1:6610743-6610762 Msa1007210:CDS 40.0%
GGATAAGCACCTCAAAAAAC+CGG + chr7_1:6610827-6610846 Msa1007210:CDS 40.0%
! GGACAAGGAACTATTTTGTC+CGG - chr7_1:6610849-6610868 None:intergenic 40.0%
TACCGTTGCATTTCAAGGAA+GGG - chr7_1:6611061-6611080 None:intergenic 40.0%
GATTGTACCGTTGCATTTCA+AGG - chr7_1:6611066-6611085 None:intergenic 40.0%
! GTGAGTTGGATCCAAATGTA+AGG - chr7_1:6611088-6611107 None:intergenic 40.0%
CTCACCTTTATGTGATTCAG+TGG + chr7_1:6611103-6611122 Msa1007210:CDS 40.0%
GATGCCACTGAATCACATAA+AGG - chr7_1:6611110-6611129 None:intergenic 40.0%
CTCATACCAGTGAAGAACAA+GGG + chr7_1:6611213-6611232 Msa1007210:CDS 40.0%
TCATACCAGTGAAGAACAAG+GGG + chr7_1:6611214-6611233 Msa1007210:CDS 40.0%
CAAGAACAAGCTATGTGGAA+TGG + chr7_1:6611305-6611324 Msa1007210:CDS 40.0%
TTGGCATTTACCATGGAATC+CGG + chr7_1:6611373-6611392 Msa1007210:CDS 40.0%
TAGAATGGCATGGAAAATCC+TGG - chr7_1:6611440-6611459 None:intergenic 40.0%
! GAGTTATGGTTTGCACCATT+CGG - chr7_1:6611533-6611552 None:intergenic 40.0%
! GAGAGTTTGGAGTAGAGTTA+TGG - chr7_1:6611547-6611566 None:intergenic 40.0%
TTACCTAAGGTTGGAGAGTT+TGG - chr7_1:6611560-6611579 None:intergenic 40.0%
GTCCCTTGAATGTTTACCTA+AGG - chr7_1:6611573-6611592 None:intergenic 40.0%
CTAAAATCAAGCGAAGGAGA+TGG + chr7_1:6611602-6611621 Msa1007210:CDS 40.0%
TTAGCGAAGAAAAGAGCTTG+TGG + chr7_1:6611636-6611655 Msa1007210:CDS 40.0%
! TTTGAGGATTGATGACTCTG+AGG + chr7_1:6611670-6611689 Msa1007210:CDS 40.0%
AAGCAGAAAAAAGCTCCTTC+TGG + chr7_1:6611693-6611712 Msa1007210:CDS 40.0%
GTGTGACGAGAAAAATCACT+CGG + chr7_1:6611790-6611809 Msa1007210:CDS 40.0%
! ACCTTTTTCTTCTGTTCGGT+TGG - chr7_1:6612029-6612048 None:intergenic 40.0%
ACCGAACAGAAGAAAAAGGT+TGG + chr7_1:6612029-6612048 Msa1007210:three_prime_UTR 40.0%
GGGTTCAATTTGTACTTTCC+TGG + chr7_1:6612217-6612236 Msa1007210:three_prime_UTR 40.0%
!! TCATTGACTCTAATCTGGCT+TGG + chr7_1:6612271-6612290 Msa1007210:three_prime_UTR 40.0%
GACTCTGCGATCAAACTGTT+TGG + chr7_1:6609180-6609199 Msa1007210:CDS 45.0%
AAGTGCAGAGCATATGATGC+AGG - chr7_1:6610145-6610164 None:intergenic 45.0%
! TGTTTGTGTCGGTGCTTCAT+AGG + chr7_1:6610209-6610228 Msa1007210:intron 45.0%
! GTTTGTGTCGGTGCTTCATA+GGG + chr7_1:6610210-6610229 Msa1007210:intron 45.0%
! TTTGTGTCGGTGCTTCATAG+GGG + chr7_1:6610211-6610230 Msa1007210:intron 45.0%
GTCTACTGCTAATGCTCTCA+TGG + chr7_1:6610334-6610353 Msa1007210:intron 45.0%
! GTTTTTCTCCCGTTGTGTTC+TGG - chr7_1:6610632-6610651 None:intergenic 45.0%
CTGTTACAGTATCCACCGAA+AGG + chr7_1:6610742-6610761 Msa1007210:CDS 45.0%
CAATGTAGCAACCTCCCTTT+CGG - chr7_1:6610760-6610779 None:intergenic 45.0%
TGTCTCGTCCTGTTCTTCTT+TGG - chr7_1:6610796-6610815 None:intergenic 45.0%
ATGCTACTACAACGAGGACA+AGG - chr7_1:6610864-6610883 None:intergenic 45.0%
TTGTCCTCGTTGTAGTAGCA+TGG + chr7_1:6610863-6610882 Msa1007210:CDS 45.0%
CAGTTCTTGCAGAAATGACG+GGG - chr7_1:6610930-6610949 None:intergenic 45.0%
GCAGTTCTTGCAGAAATGAC+GGG - chr7_1:6610931-6610950 None:intergenic 45.0%
GGCAGTTCTTGCAGAAATGA+CGG - chr7_1:6610932-6610951 None:intergenic 45.0%
GCAAGAACTGCCAGAGATAT+TGG + chr7_1:6610940-6610959 Msa1007210:CDS 45.0%
TACGTTTCTCATGGTTCCAC+CGG - chr7_1:6610970-6610989 None:intergenic 45.0%
ACCATGAGAAACGTACCAGT+AGG + chr7_1:6610975-6610994 Msa1007210:CDS 45.0%
ACCTACTGGTACGTTTCTCA+TGG - chr7_1:6610979-6610998 None:intergenic 45.0%
!!! GCTCTTGTTTTTTCTGCGAC+CGG - chr7_1:6611003-6611022 None:intergenic 45.0%
CACCCTTCCTTGAAATGCAA+CGG + chr7_1:6611056-6611075 Msa1007210:CDS 45.0%
GTACCGTTGCATTTCAAGGA+AGG - chr7_1:6611062-6611081 None:intergenic 45.0%
CCTTGTTCTTCACTGGTATG+AGG - chr7_1:6611215-6611234 None:intergenic 45.0%
CCTCATACCAGTGAAGAACA+AGG + chr7_1:6611212-6611231 Msa1007210:CDS 45.0%
AGTTACCTCCACAAAGTCGA+CGG + chr7_1:6611259-6611278 Msa1007210:CDS 45.0%
ACTTTCCTCATGGAACTCCT+TGG + chr7_1:6611354-6611373 Msa1007210:CDS 45.0%
AAATGCCAAGGAGTTCCATG+AGG - chr7_1:6611362-6611381 None:intergenic 45.0%
GAACTCCTTGGCATTTACCA+TGG + chr7_1:6611366-6611385 Msa1007210:CDS 45.0%
GGATTCCATGGTAAATGCCA+AGG - chr7_1:6611374-6611393 None:intergenic 45.0%
! GGAAAATCCTGGTGGACAAA+AGG - chr7_1:6611429-6611448 None:intergenic 45.0%
AATGGCATGGAAAATCCTGG+TGG - chr7_1:6611437-6611456 None:intergenic 45.0%
AGTTGCAGGATAGAATGGCA+TGG - chr7_1:6611450-6611469 None:intergenic 45.0%
GTACAACCCCAATAAGTTGC+AGG - chr7_1:6611464-6611483 None:intergenic 45.0%
GTTGTACTATGCCAAGTGCA+TGG + chr7_1:6611477-6611496 Msa1007210:CDS 45.0%
CAAGTGCATGGAACATTCCA+CGG + chr7_1:6611489-6611508 Msa1007210:CDS 45.0%
! TTTGCACCATTCGGTGATGA+TGG - chr7_1:6611524-6611543 None:intergenic 45.0%
ACTCCAAACTCTCCAACCTT+AGG + chr7_1:6611554-6611573 Msa1007210:CDS 45.0%
! AATCCCAAGTGTTGTCCAGA+AGG - chr7_1:6611711-6611730 None:intergenic 45.0%
TTGAAGGGAATGCCTGAAAG+AGG - chr7_1:6611769-6611788 None:intergenic 45.0%
TTCAGTCTTGCAAGCCAATC+CGG + chr7_1:6611823-6611842 Msa1007210:CDS 45.0%
GCCAACCGAACAGAAGAAAA+AGG + chr7_1:6612025-6612044 Msa1007210:three_prime_UTR 45.0%
TACAGTATCCACCGAAAGGG+AGG + chr7_1:6610746-6610765 Msa1007210:CDS 50.0%
GGACGAGACAAGTAACACAC+AGG + chr7_1:6610806-6610825 Msa1007210:CDS 50.0%
GTGTCCATGCTACTACAACG+AGG - chr7_1:6610870-6610889 None:intergenic 50.0%
! TCTTGCAGAAATGACGGGGT+TGG - chr7_1:6610926-6610945 None:intergenic 50.0%
TGCCAGAGATATTGGACTGC+CGG + chr7_1:6610948-6610967 Msa1007210:CDS 50.0%
AGAAACGTACCAGTAGGTGC+CGG + chr7_1:6610981-6611000 Msa1007210:CDS 50.0%
TACCAGTGAAGAACAAGGGG+AGG + chr7_1:6611217-6611236 Msa1007210:CDS 50.0%
ATCCTCCCCTTGTTCTTCAC+TGG - chr7_1:6611222-6611241 None:intergenic 50.0%
GAAAGTAGCCACCTTGTGGT+GGG - chr7_1:6611340-6611359 None:intergenic 50.0%
TGAGGAAAGTAGCCACCTTG+TGG - chr7_1:6611344-6611363 None:intergenic 50.0%
! CAAGGTGGCTACTTTCCTCA+TGG + chr7_1:6611344-6611363 Msa1007210:CDS 50.0%
CTCATTTGCACCGGATTCCA+TGG - chr7_1:6611386-6611405 None:intergenic 50.0%
ATCGGTGTGCTCATTTGCAC+CGG - chr7_1:6611395-6611414 None:intergenic 50.0%
! AATCCTGGTGGACAAAAGGC+CGG - chr7_1:6611425-6611444 None:intergenic 50.0%
CGTGGAATGTTCCATGCACT+TGG - chr7_1:6611491-6611510 None:intergenic 50.0%
AGCTCCTTCTGGACAACACT+TGG + chr7_1:6611704-6611723 Msa1007210:CDS 50.0%
GCTCCTTCTGGACAACACTT+GGG + chr7_1:6611705-6611724 Msa1007210:CDS 50.0%
AATGCCTGAAAGAGGCCTCT+CGG - chr7_1:6611761-6611780 None:intergenic 50.0%
TGTAGCAACCTCCCTTTCGG+TGG - chr7_1:6610757-6610776 None:intergenic 55.0%
CACCGGCAGTCCAATATCTC+TGG - chr7_1:6610953-6610972 None:intergenic 55.0%
CAGAGATATTGGACTGCCGG+TGG + chr7_1:6610951-6610970 Msa1007210:CDS 55.0%
ACCTCCACAAAGTCGACGGA+AGG + chr7_1:6611263-6611282 Msa1007210:CDS 55.0%
!! ACCTTCCGTCGACTTTGTGG+AGG - chr7_1:6611267-6611286 None:intergenic 55.0%
!! TGCACCTTCCGTCGACTTTG+TGG - chr7_1:6611270-6611289 None:intergenic 55.0%
! CACCTTGTGGTGGGAAGCTA+TGG - chr7_1:6611331-6611350 None:intergenic 55.0%
CATAGCTTCCCACCACAAGG+TGG + chr7_1:6611329-6611348 Msa1007210:CDS 55.0%
GGAAAGTAGCCACCTTGTGG+TGG - chr7_1:6611341-6611360 None:intergenic 55.0%
!! CAAAAGGCCGGTGGTGGAAT+CGG - chr7_1:6611413-6611432 None:intergenic 55.0%
GCACAGCCATCATCACCGAA+TGG + chr7_1:6611515-6611534 Msa1007210:CDS 55.0%
! ACCGACTCAGTTTCTCCGAG+AGG + chr7_1:6611743-6611762 Msa1007210:CDS 55.0%
GCCTCTCGGAGAAACTGAGT+CGG - chr7_1:6611747-6611766 None:intergenic 55.0%
TTCTCCGAGAGGCCTCTTTC+AGG + chr7_1:6611754-6611773 Msa1007210:CDS 55.0%
AGTCTTGCAAGCCAATCCGG+CGG + chr7_1:6611826-6611845 Msa1007210:CDS 55.0%
TTTCTGCGACCGGCACCTAC+TGG - chr7_1:6610993-6611012 None:intergenic 60.0%
GGCCATAGCTTCCCACCACA+AGG + chr7_1:6611326-6611345 Msa1007210:CDS 60.0%
!! GAGCACACCGATTCCACCAC+CGG + chr7_1:6611403-6611422 Msa1007210:CDS 60.0%
! GATGATGGCTGTGCTTGCCG+TGG - chr7_1:6611509-6611528 None:intergenic 60.0%
CCTAGACAATGCCGCCGGAT+TGG - chr7_1:6611840-6611859 None:intergenic 60.0%
CCAATCCGGCGGCATTGTCT+AGG + chr7_1:6611837-6611856 Msa1007210:CDS 60.0%
AGCGACCTAGACAATGCCGC+CGG - chr7_1:6611845-6611864 None:intergenic 60.0%
GGTGGACAAAAGGCCGGTGG+TGG - chr7_1:6611419-6611438 None:intergenic 65.0%
! CCTGGTGGACAAAAGGCCGG+TGG - chr7_1:6611422-6611441 None:intergenic 65.0%
! CCACCGGCCTTTTGTCCACC+AGG + chr7_1:6611419-6611438 Msa1007210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 6609063 6612367 6609063 ID=Msa1007210;Name=Msa1007210
chr7_1 mRNA 6609063 6612367 6609063 ID=Msa1007210-mRNA-1;Parent=Msa1007210;Name=Msa1007210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=102|1|1|1|1|1|2|481|478
chr7_1 exon 6609063 6609347 6609063 ID=Msa1007210-mRNA-1:exon:1959;Parent=Msa1007210-mRNA-1
chr7_1 exon 6610633 6612367 6610633 ID=Msa1007210-mRNA-1:exon:1960;Parent=Msa1007210-mRNA-1
chr7_1 five_prime_UTR 6609063 6609164 6609063 ID=Msa1007210-mRNA-1:five_prime_utr;Parent=Msa1007210-mRNA-1
chr7_1 CDS 6609165 6609347 6609165 ID=Msa1007210-mRNA-1:cds;Parent=Msa1007210-mRNA-1
chr7_1 CDS 6610633 6611886 6610633 ID=Msa1007210-mRNA-1:cds;Parent=Msa1007210-mRNA-1
chr7_1 three_prime_UTR 6611887 6612367 6611887 ID=Msa1007210-mRNA-1:three_prime_utr;Parent=Msa1007210-mRNA-1
Gene Sequence

>Msa1007210

ATGTTGGAGACAAAAGACTCTGCGATCAAACTGTTTGGAAAAACAATTCCTATTTCAGAAATTCATGTTGGAAAAACAATTTCAGAGAGTATTGATGATCATCATCATCATGATTTTTCTACAAACTCTTCAAATGAGTCTCATAATAATAAAGATGCTTCACAAGAACATGAGATTGAGAAGAACACAACGGGAGAAAAACTGTCGAATAAAAAGAACGAAGATGGATTCCTTGCACAATCAACAGAAGAATTCACTAATCCAGATGCAACTTCTAGAACTGATGAAGAATCTGTTACAGTATCCACCGAAAGGGAGGTTGCTACATTGAAAACTTCAAAGACCAAAGAAGAACAGGACGAGACAAGTAACACACAGGATAAGCACCTCAAAAAACCGGACAAAATAGTTCCTTGTCCTCGTTGTAGTAGCATGGACACGAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCCCGTCATTTCTGCAAGAACTGCCAGAGATATTGGACTGCCGGTGGAACCATGAGAAACGTACCAGTAGGTGCCGGTCGCAGAAAAAACAAGAGCTCTTCAGAAGCAACACTTCAGAATTCTCGGATACACCCTTCCTTGAAATGCAACGGTACAATCCTTACATTTGGATCCAACTCACCTTTATGTGATTCAGTGGCATCTGTTTTGAAACTTGCTGATAAAACAGTGCAAAATTACACAAGAAATGGATATCATAAACATGAAGAACTAAGAATTTGTGTTCCTCATACCAGTGAAGAACAAGGGGAGGATCAATCAAATAAATCGTCAGTTACCTCCACAAAGTCGACGGAAGGTGCAACCACCAATGTATCTCAAGAACAAGCTATGTGGAATGGCCATAGCTTCCCACCACAAGGTGGCTACTTTCCTCATGGAACTCCTTGGCATTTACCATGGAATCCGGTGCAAATGAGCACACCGATTCCACCACCGGCCTTTTGTCCACCAGGATTTTCCATGCCATTCTATCCTGCAACTTATTGGGGTTGTACTATGCCAAGTGCATGGAACATTCCACGGCAAGCACAGCCATCATCACCGAATGGTGCAAACCATAACTCTACTCCAAACTCTCCAACCTTAGGTAAACATTCAAGGGACGAAAACATGCTAAAATCAAGCGAAGGAGATGGTAAGAAAGAAATTAGCGAAGAAAAGAGCTTGTGGTTTCCTAAAACTTTGAGGATTGATGACTCTGAGGAAGCAGAAAAAAGCTCCTTCTGGACAACACTTGGGATTAAAAACAACAACACCGACTCAGTTTCTCCGAGAGGCCTCTTTCAGGCATTCCCTTCAAAGTGTGACGAGAAAAATCACTCGGTACAATTGTCTTCAGTCTTGCAAGCCAATCCGGCGGCATTGTCTAGGTCGCTTCACTTTCATGAGACTTCGTAA
Protein sequence

>Msa1007210

MLETKDSAIKLFGKTIPISEIHVGKTISESIDDHHHHDFSTNSSNESHNNKDASQEHEIEKNTTGEKLSNKKNEDGFLAQSTEEFTNPDATSRTDEESVTVSTEREVATLKTSKTKEEQDETSNTQDKHLKKPDKIVPCPRCSSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSEATLQNSRIHPSLKCNGTILTFGSNSPLCDSVASVLKLADKTVQNYTRNGYHKHEELRICVPHTSEEQGEDQSNKSSVTSTKSTEGATTNVSQEQAMWNGHSFPPQGGYFPHGTPWHLPWNPVQMSTPIPPPAFCPPGFSMPFYPATYWGCTMPSAWNIPRQAQPSSPNGANHNSTPNSPTLGKHSRDENMLKSSEGDGKKEISEEKSLWFPKTLRIDDSEEAEKSSFWTTLGIKNNNTDSVSPRGLFQAFPSKCDEKNHSVQLSSVLQANPAALSRSLHFHETS*