AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1007340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007340 MtrunA17_Chr7g0217721 86.819 349 39 2 1 342 1 349 0.0 613
Msa1007340 MtrunA17_Chr3g0113001 68.317 303 55 4 64 342 10 295 6.88e-137 390
Msa1007340 MtrunA17_Chr3g0113031 69.014 284 50 5 80 342 1 267 9.47e-128 366
Msa1007340 MtrunA17_Chr7g0217711 92.121 165 13 0 1 165 1 165 4.42e-112 323
Msa1007340 MtrunA17_Chr6g0453451 51.875 320 121 6 15 330 16 306 5.09e-99 295
Msa1007340 MtrunA17_Chr4g0060931 54.104 268 106 6 5 271 2 253 5.55e-85 261
Msa1007340 MtrunA17_Chr3g0091921 58.190 232 82 4 5 236 2 218 8.26e-82 251
Msa1007340 MtrunA17_Chr2g0316971 56.422 218 69 3 19 217 23 233 4.94e-77 241
Msa1007340 MtrunA17_Chr7g0253011 46.599 294 110 8 5 292 3 255 1.76e-73 232
Msa1007340 MtrunA17_Chr6g0461661 55.708 219 82 5 15 229 14 221 4.52e-73 231
Msa1007340 MtrunA17_Chr6g0484441 51.220 246 98 7 19 264 5 228 1.50e-67 215
Msa1007340 MtrunA17_Chr3g0139331 51.691 207 76 5 19 212 11 206 4.08e-64 207
Msa1007340 MtrunA17_Chr1g0147421 58.683 167 55 3 19 182 27 182 3.32e-62 202
Msa1007340 MtrunA17_Chr3g0144271 65.942 138 44 2 19 153 23 160 2.55e-59 196
Msa1007340 MtrunA17_Chr8g0346001 54.286 175 67 5 18 184 14 183 2.30e-56 189
Msa1007340 MtrunA17_Chr2g0312321 43.373 249 113 8 12 258 4 226 1.61e-55 183
Msa1007340 MtrunA17_Chr4g0056541 54.878 164 54 3 20 177 8 157 3.74e-55 184
Msa1007340 MtrunA17_Chr5g0398971 54.938 162 59 3 20 177 8 159 9.25e-55 182
Msa1007340 MtrunA17_Chr4g0018391 54.658 161 59 3 20 177 8 157 1.92e-54 182
Msa1007340 MtrunA17_Chr4g0017921 55.828 163 55 3 20 178 9 158 2.70e-53 179
Msa1007340 MtrunA17_Chr1g0183741 39.113 248 122 5 19 261 10 233 2.88e-53 176
Msa1007340 MtrunA17_Chr8g0359921 48.521 169 80 1 14 182 9 170 3.71e-53 178
Msa1007340 MtrunA17_Chr2g0309331 53.529 170 58 6 16 178 7 162 3.73e-53 178
Msa1007340 MtrunA17_Chr5g0405211 54.037 161 60 3 20 177 9 158 4.17e-52 176
Msa1007340 MtrunA17_Chr8g0384721 50.289 173 76 4 17 187 5 169 4.46e-52 174
Msa1007340 MtrunA17_Chr8g0372121 46.073 191 89 3 20 207 7 186 1.11e-51 173
Msa1007340 MtrunA17_Chr5g0417791 46.108 167 85 1 17 183 1 162 5.89e-50 167
Msa1007340 MtrunA17_Chr4g0042561 47.024 168 80 2 18 183 8 168 8.01e-50 167
Msa1007340 MtrunA17_Chr2g0318081 46.154 169 82 1 14 182 11 170 1.34e-49 169
Msa1007340 MtrunA17_Chr1g0200561 48.588 177 64 6 9 176 10 168 1.37e-49 169
Msa1007340 MtrunA17_Chr3g0130731 47.368 171 83 3 16 186 4 167 9.88e-49 165
Msa1007340 MtrunA17_Chr3g0128111 47.753 178 81 3 22 196 45 213 1.16e-48 164
Msa1007340 MtrunA17_Chr3g0124761 47.561 164 75 3 16 177 4 158 1.68e-48 164
Msa1007340 MtrunA17_Chr7g0261411 47.468 158 68 2 19 174 10 154 3.14e-48 164
Msa1007340 MtrunA17_Chr5g0428991 38.559 236 123 4 18 251 24 239 4.85e-48 171
Msa1007340 MtrunA17_Chr3g0128151 51.250 160 67 2 19 176 22 172 9.18e-48 169
Msa1007340 MtrunA17_Chr8g0361731 38.760 258 127 10 13 264 9 241 4.50e-47 164
Msa1007340 MtrunA17_Chr2g0318101 45.882 170 84 3 15 178 11 178 4.64e-47 162
Msa1007340 MtrunA17_Chr7g0263931 49.693 163 75 3 16 176 8 165 5.97e-47 161
Msa1007340 MtrunA17_Chr6g0481091 56.489 131 55 1 17 145 4 134 7.44e-47 159
Msa1007340 MtrunA17_Chr2g0309891 54.286 140 58 2 17 150 4 143 1.19e-46 161
Msa1007340 MtrunA17_Chr4g0047841 44.886 176 81 3 19 178 15 190 6.15e-46 159
Msa1007340 MtrunA17_Chr6g0453131 37.269 271 153 7 11 269 6 271 6.34e-46 160
Msa1007340 MtrunA17_Chr3g0092671 49.708 171 72 4 22 189 8 167 7.16e-46 163
Msa1007340 MtrunA17_Chr7g0252971 45.402 174 81 2 12 176 1 169 9.69e-46 159
Msa1007340 MtrunA17_Chr7g0214071 49.112 169 70 5 16 182 12 166 1.03e-45 156
Msa1007340 MtrunA17_Chr3g0109821 47.531 162 75 2 17 176 4 157 3.97e-45 163
Msa1007340 MtrunA17_Chr1g0197361 41.518 224 111 5 22 242 11 217 5.18e-45 162
Msa1007340 MtrunA17_Chr3g0130101 44.385 187 91 5 12 196 1 176 7.86e-45 157
Msa1007340 MtrunA17_Chr5g0433781 54.962 131 57 1 17 145 4 134 9.06e-45 162
Msa1007340 MtrunA17_Chr8g0364791 43.429 175 87 3 18 190 5 169 1.84e-44 158
Msa1007340 MtrunA17_Chr5g0417001 45.294 170 85 4 13 178 9 174 4.07e-44 155
Msa1007340 MtrunA17_Chr4g0054791 39.819 221 114 6 14 229 1 207 1.77e-43 152
Msa1007340 MtrunA17_Chr2g0326361 46.341 164 78 3 19 180 14 169 1.49e-42 150
Msa1007340 MtrunA17_Chr5g0400461 52.593 135 55 2 19 144 6 140 2.82e-42 149
Msa1007340 MtrunA17_Chr8g0384201 37.447 235 121 6 18 240 5 225 3.37e-42 152
Msa1007340 MtrunA17_Chr1g0201021 44.706 170 82 3 22 189 22 181 1.18e-41 152
Msa1007340 MtrunA17_Chr2g0311651 34.951 309 168 9 15 314 19 303 6.04e-41 145
Msa1007340 MtrunA17_Chr5g0442771 41.818 165 92 2 15 176 15 178 1.22e-39 142
Msa1007340 MtrunA17_Chr4g0076731 44.231 156 75 2 22 176 57 201 1.36e-39 144
Msa1007340 MtrunA17_Chr2g0311661 42.553 188 96 7 1 178 1 186 1.74e-39 141
Msa1007340 MtrunA17_Chr1g0197351 52.846 123 56 1 22 142 45 167 1.13e-36 137
Msa1007340 MtrunA17_Chr8g0345671 55.469 128 51 5 20 142 12 138 3.11e-36 135
Msa1007340 MtrunA17_Chr4g0038751 46.358 151 74 3 1 148 1 147 6.59e-36 132
Msa1007340 MtrunA17_Chr8g0345691 52.713 129 55 5 20 143 13 140 2.54e-34 130
Msa1007340 MtrunA17_Chr8g0385991 39.881 168 87 4 18 180 13 171 3.98e-33 122
Msa1007340 MtrunA17_Chr3g0131911 38.415 164 92 3 18 177 13 171 3.41e-32 120
Msa1007340 MtrunA17_Chr2g0321631 46.565 131 63 4 20 143 5 135 4.89e-32 120
Msa1007340 MtrunA17_Chr2g0321741 48.113 106 54 1 38 142 11 116 4.99e-32 122
Msa1007340 MtrunA17_Chr3g0113041 81.538 65 12 0 1 65 1 65 5.76e-32 114
Msa1007340 MtrunA17_Chr4g0026141 46.970 132 62 4 19 143 5 135 6.48e-32 120
Msa1007340 MtrunA17_Chr3g0113011 78.462 65 14 0 1 65 1 65 7.75e-32 114
Msa1007340 MtrunA17_Chr8g0345711 44.961 129 65 4 19 142 12 139 2.16e-28 108
Msa1007340 MtrunA17_Chr7g0266701 43.182 132 68 4 19 143 4 135 1.39e-26 105
Msa1007340 MtrunA17_Chr8g0345731 42.748 131 68 4 19 142 24 154 1.39e-26 103
Msa1007340 MtrunA17_Chr8g0345701 45.455 143 56 7 20 143 8 147 3.51e-26 102
Msa1007340 MtrunA17_Chr4g0050701 32.558 172 103 3 19 188 11 171 8.27e-25 99.4
Msa1007340 MtrunA17_Chr8g0345721 35.393 178 78 6 1 142 15 191 9.73e-24 97.1
Msa1007340 MtrunA17_Chr7g0243371 53.333 75 33 1 72 144 17 91 5.98e-22 89.7
Msa1007340 MtrunA17_Chr8g0345741 43.697 119 61 5 30 143 2 119 2.94e-21 89.0
Msa1007340 MtrunA17_Chr8g0384351 36.310 168 75 7 17 184 8 143 1.82e-18 82.0
Msa1007340 MtrunA17_Chr3g0130321 32.941 170 93 5 15 175 3 160 2.19e-17 79.7
Msa1007340 MtrunA17_Chr7g0251661 33.846 130 80 5 16 142 7 133 2.34e-16 75.5
Msa1007340 MtrunA17_Chr4g0040541 34.266 143 76 5 19 144 48 189 4.36e-14 71.6
Msa1007340 MtrunA17_Chr7g0251651 32.558 129 81 5 17 142 16 141 5.94e-14 69.7
Msa1007340 MtrunA17_Chr2g0324961 34.028 144 74 6 19 144 49 189 2.03e-12 66.6
Msa1007340 MtrunA17_Chr7g0251671 30.709 127 82 4 19 142 10 133 8.50e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007340 AT5G61430.1 45.115 348 147 8 5 323 2 334 1.24e-85 262
Msa1007340 AT5G07680.1 52.290 262 97 6 15 264 13 258 6.47e-82 252
Msa1007340 AT5G07680.2 52.713 258 94 6 19 264 3 244 1.77e-81 251
Msa1007340 AT3G29035.1 56.808 213 68 2 3 215 8 196 1.01e-76 238
Msa1007340 AT5G39610.1 57.009 214 75 4 8 217 5 205 3.68e-74 231
Msa1007340 AT5G18270.1 64.242 165 51 2 15 178 17 174 2.76e-71 225
Msa1007340 AT5G18270.2 64.242 165 51 2 15 178 17 174 4.29e-71 224
Msa1007340 AT3G04060.1 56.784 199 77 3 15 211 16 207 5.71e-70 222
Msa1007340 AT3G18400.1 63.415 164 50 2 19 182 5 158 5.91e-69 218
Msa1007340 AT5G53950.1 64.375 160 48 2 19 176 17 169 8.00e-69 220
Msa1007340 AT3G15170.1 50.463 216 98 2 20 233 21 229 7.05e-65 208
Msa1007340 AT1G76420.1 59.375 160 53 2 19 176 22 171 2.38e-64 207
Msa1007340 AT2G24430.2 58.235 170 59 2 15 182 12 171 2.98e-63 204
Msa1007340 AT2G24430.1 58.235 170 59 2 15 182 12 171 2.98e-63 204
Msa1007340 AT5G61430.2 43.357 286 118 8 67 323 1 271 3.27e-61 197
Msa1007340 AT1G56010.2 42.169 249 120 9 1 240 1 234 7.59e-58 190
Msa1007340 AT2G46770.1 51.366 183 82 2 18 193 15 197 5.30e-57 189
Msa1007340 AT3G12977.1 45.087 173 87 1 12 184 11 175 4.94e-55 181
Msa1007340 AT2G18060.3 47.525 202 91 4 14 212 4 193 6.54e-55 184
Msa1007340 AT2G18060.1 47.525 202 91 4 14 212 4 193 6.54e-55 184
Msa1007340 AT1G12260.2 55.901 161 57 3 20 177 8 157 7.33e-55 183
Msa1007340 AT1G12260.1 55.901 161 57 3 20 177 8 157 1.13e-54 184
Msa1007340 AT4G10350.1 55.357 168 63 3 20 184 10 168 6.03e-54 181
Msa1007340 AT3G61910.1 48.744 199 89 4 18 206 10 205 1.30e-53 179
Msa1007340 AT1G62700.1 54.601 163 60 3 18 177 6 157 1.55e-53 181
Msa1007340 AT1G62700.2 54.601 163 60 3 18 177 6 157 1.55e-53 181
Msa1007340 AT1G32770.1 48.438 192 88 4 18 199 15 205 1.33e-52 177
Msa1007340 AT5G66300.1 53.374 163 63 3 19 178 12 164 5.90e-52 174
Msa1007340 AT5G62380.2 49.457 184 67 6 19 190 7 176 7.88e-52 175
Msa1007340 AT5G62380.1 49.457 184 67 6 19 190 7 176 7.88e-52 175
Msa1007340 AT1G33280.1 53.086 162 61 3 20 178 9 158 3.40e-51 172
Msa1007340 AT4G36160.1 48.454 194 84 5 20 209 11 192 5.60e-51 174
Msa1007340 AT4G36160.3 48.454 194 84 5 20 209 11 192 5.60e-51 174
Msa1007340 AT4G36160.2 48.454 194 84 5 20 209 15 196 6.02e-51 174
Msa1007340 AT1G79580.3 52.047 171 60 6 16 179 14 169 1.68e-50 172
Msa1007340 AT1G79580.5 52.047 171 60 6 16 179 14 169 1.68e-50 172
Msa1007340 AT1G79580.4 52.047 171 60 6 16 179 14 169 1.68e-50 172
Msa1007340 AT1G79580.2 52.047 171 60 6 16 179 14 169 1.68e-50 172
Msa1007340 AT1G79580.1 52.047 171 60 6 16 179 14 169 1.68e-50 172
Msa1007340 AT4G27410.2 47.929 169 73 3 11 176 6 162 2.72e-50 170
Msa1007340 AT1G71930.2 40.408 245 119 5 14 249 4 230 7.36e-50 169
Msa1007340 AT1G71930.1 40.408 245 119 5 14 249 4 230 7.36e-50 169
Msa1007340 AT3G15500.1 44.970 169 84 1 14 182 9 168 1.08e-49 169
Msa1007340 AT1G77450.1 43.523 193 97 4 17 206 8 191 1.32e-49 166
Msa1007340 AT4G35580.1 46.632 193 87 4 19 206 9 190 2.17e-49 173
Msa1007340 AT1G52890.1 45.562 169 83 1 14 182 9 168 2.81e-49 167
Msa1007340 AT4G35580.3 46.632 193 87 4 19 206 9 190 3.25e-49 172
Msa1007340 AT4G35580.2 46.632 193 87 4 19 206 9 190 3.41e-49 172
Msa1007340 AT5G08790.1 49.102 167 80 3 16 182 4 165 4.24e-49 166
Msa1007340 AT1G33060.1 50.625 160 68 2 19 176 24 174 2.95e-48 172
Msa1007340 AT1G33060.2 50.625 160 68 2 19 176 24 174 3.56e-48 172
Msa1007340 AT5G63790.1 48.837 172 82 4 11 182 43 208 1.36e-47 163
Msa1007340 AT5G63790.2 48.837 172 82 4 11 182 53 218 1.57e-47 163
Msa1007340 AT3G04070.2 43.363 226 109 6 19 232 10 228 1.62e-47 164
Msa1007340 AT4G28530.1 39.823 226 100 5 18 220 9 221 1.79e-47 164
Msa1007340 AT1G69490.1 47.024 168 80 2 19 184 9 169 2.11e-47 161
Msa1007340 AT1G01720.1 46.341 164 82 2 15 178 3 160 2.54e-47 162
Msa1007340 AT1G61110.1 45.455 176 92 2 5 176 2 177 4.06e-47 162
Msa1007340 AT5G04410.1 49.412 170 74 3 22 189 12 171 8.45e-47 167
Msa1007340 AT5G39820.1 45.614 171 79 2 22 178 23 193 8.95e-47 162
Msa1007340 AT3G17730.1 55.725 131 56 1 17 145 4 134 1.86e-46 158
Msa1007340 AT3G10500.1 47.647 170 77 3 22 189 12 171 3.48e-46 165
Msa1007340 AT1G65910.1 43.158 190 103 2 17 204 4 190 4.91e-46 166
Msa1007340 AT3G04070.1 40.756 238 114 6 19 232 10 244 8.97e-46 160
Msa1007340 AT4G27410.3 43.548 186 73 4 11 176 6 179 9.05e-46 158
Msa1007340 AT1G54330.1 48.538 171 74 2 17 185 4 162 1.28e-45 157
Msa1007340 AT3G03200.1 49.693 163 70 3 17 176 4 157 1.30e-45 162
Msa1007340 AT5G17260.1 49.080 163 71 3 17 176 4 157 1.87e-45 161
Msa1007340 AT1G26870.1 46.111 180 92 3 1 178 1 177 2.08e-45 160
Msa1007340 AT3G49530.2 47.826 161 72 3 19 176 13 164 3.49e-45 159
Msa1007340 AT2G33480.1 48.171 164 67 3 17 177 13 161 4.07e-45 155
Msa1007340 AT5G13180.1 46.429 168 75 4 17 182 12 166 6.57e-45 154
Msa1007340 AT3G10480.2 50.920 163 65 3 22 180 30 181 1.14e-44 159
Msa1007340 AT3G49530.1 47.826 161 72 3 19 176 13 164 1.25e-44 159
Msa1007340 AT2G27300.1 37.751 249 119 7 19 257 15 237 1.44e-44 156
Msa1007340 AT2G33480.2 48.171 164 65 3 17 177 13 159 1.80e-44 154
Msa1007340 AT5G46590.2 56.589 129 53 2 19 144 6 134 2.43e-44 154
Msa1007340 AT5G46590.1 56.589 129 53 2 19 144 6 134 3.67e-44 154
Msa1007340 AT5G24590.2 34.579 321 165 9 19 328 13 299 3.87e-44 157
Msa1007340 AT3G10480.1 50.610 164 65 3 22 180 30 182 4.67e-44 157
Msa1007340 AT3G15510.1 44.444 171 87 3 23 187 21 189 8.08e-44 155
Msa1007340 AT3G10490.1 50.311 161 70 3 22 180 30 182 1.12e-43 150
Msa1007340 AT3G10490.2 50.311 161 70 3 22 180 30 182 1.37e-42 153
Msa1007340 AT5G22290.1 50.000 132 64 2 19 149 22 152 4.79e-41 147
Msa1007340 AT2G43000.1 38.636 176 99 2 1 176 1 167 5.12e-41 145
Msa1007340 AT4G17980.1 53.846 130 56 2 19 144 6 135 6.08e-41 144
Msa1007340 AT2G02450.1 45.513 156 73 2 22 176 54 198 6.87e-41 147
Msa1007340 AT5G09330.5 40.341 176 93 3 16 189 3 168 7.11e-41 149
Msa1007340 AT5G09330.2 40.341 176 93 3 16 189 3 168 7.11e-41 149
Msa1007340 AT5G09330.4 40.341 176 93 3 16 189 3 168 7.11e-41 149
Msa1007340 AT5G09330.3 40.341 176 93 3 16 189 3 168 7.11e-41 149
Msa1007340 AT5G09330.1 40.341 176 93 3 16 189 3 168 7.11e-41 149
Msa1007340 AT2G02450.2 45.513 156 73 2 22 176 54 198 8.59e-41 148
Msa1007340 AT4G17980.2 53.846 130 56 2 19 144 6 135 1.84e-40 144
Msa1007340 AT3G44290.2 50.000 132 64 2 19 149 15 145 2.11e-40 142
Msa1007340 AT3G44290.1 50.000 132 64 2 19 149 15 145 2.27e-39 142
Msa1007340 AT1G52880.1 46.250 160 81 2 23 178 21 179 4.09e-39 141
Msa1007340 AT1G32510.1 42.197 173 83 3 19 182 6 170 7.28e-39 139
Msa1007340 AT5G64060.1 39.205 176 95 4 16 189 3 168 9.30e-39 141
Msa1007340 AT3G10480.3 42.640 197 64 3 22 180 30 215 1.51e-38 144
Msa1007340 AT1G56010.1 45.055 182 77 8 67 240 1 167 3.48e-38 137
Msa1007340 AT1G34180.3 40.541 185 97 4 8 189 4 178 3.73e-37 139
Msa1007340 AT1G34190.1 42.286 175 88 4 18 189 14 178 5.71e-37 140
Msa1007340 AT1G34180.1 40.541 185 97 4 8 189 4 178 1.31e-36 139
Msa1007340 AT3G12977.2 49.587 121 53 1 64 184 10 122 1.88e-36 131
Msa1007340 AT4G10350.2 55.645 124 43 3 64 184 7 121 1.20e-35 131
Msa1007340 AT1G34180.4 38.071 197 97 4 8 189 4 190 2.40e-35 134
Msa1007340 AT3G12910.1 34.470 264 127 10 15 237 18 276 5.01e-35 130
Msa1007340 AT1G34180.2 38.071 197 97 4 8 189 4 190 6.11e-35 134
Msa1007340 AT2G17040.1 46.043 139 70 3 17 151 5 142 1.08e-34 128
Msa1007340 AT1G32870.1 40.556 180 95 4 12 189 3 172 6.10e-33 128
Msa1007340 AT1G32870.2 40.556 180 95 4 12 189 3 172 6.20e-33 128
Msa1007340 AT1G32870.3 40.556 180 95 4 12 189 39 208 8.64e-33 128
Msa1007340 AT5G04395.1 44.138 145 65 2 19 147 28 172 2.00e-31 117
Msa1007340 AT2G33480.3 49.541 109 40 2 72 177 8 104 1.00e-28 110
Msa1007340 AT4G28530.2 47.222 108 41 1 18 109 9 116 3.62e-28 112
Msa1007340 AT4G01550.1 35.681 213 110 8 17 219 2 197 2.57e-27 112
Msa1007340 AT5G22380.1 42.636 129 65 5 22 142 8 135 7.86e-26 103
Msa1007340 AT3G04420.2 40.945 127 71 2 20 142 4 130 3.33e-25 103
Msa1007340 AT3G04420.1 40.945 127 71 2 20 142 4 130 7.53e-25 103
Msa1007340 AT1G02230.1 35.897 195 94 8 20 207 4 174 1.00e-24 103
Msa1007340 AT3G44350.1 39.726 146 77 6 21 155 7 152 1.58e-24 98.2
Msa1007340 AT3G44350.2 39.189 148 82 6 21 160 7 154 3.64e-24 99.4
Msa1007340 AT4G01520.1 39.855 138 70 5 17 144 2 136 3.74e-24 100
Msa1007340 AT2G18060.2 46.552 116 50 3 97 212 2 105 3.87e-24 100
Msa1007340 AT4G01540.4 41.985 131 67 6 22 144 7 136 5.52e-23 99.0
Msa1007340 AT4G01540.2 41.985 131 67 6 22 144 7 136 7.99e-23 99.0
Msa1007340 AT4G01540.1 41.985 131 67 6 22 144 7 136 1.03e-22 99.0
Msa1007340 AT4G01540.3 41.985 131 67 6 22 144 7 136 1.29e-22 98.2
Msa1007340 AT1G02220.1 38.583 127 71 3 20 142 4 127 6.50e-22 95.9
Msa1007340 AT3G10490.4 55.056 89 32 2 92 180 2 82 9.78e-22 95.1
Msa1007340 AT3G10490.3 55.056 89 32 2 92 180 2 82 9.78e-22 95.1
Msa1007340 AT1G02250.1 38.462 130 70 4 20 142 4 130 8.20e-21 92.4
Msa1007340 AT5G64530.2 37.209 129 65 5 19 144 3 118 3.17e-20 86.7
Msa1007340 AT5G64530.1 32.727 165 92 4 19 176 3 155 3.87e-20 87.0
Msa1007340 AT1G01010.1 34.211 152 74 6 21 158 5 144 8.96e-19 87.0
Msa1007340 AT3G56530.1 33.582 134 86 2 15 145 48 181 1.27e-18 85.5
Msa1007340 AT5G14000.1 31.282 195 104 5 12 197 1 174 3.20e-18 82.4
Msa1007340 AT5G50820.1 29.714 175 100 7 17 183 15 174 1.19e-17 80.5
Msa1007340 AT5G22290.2 59.615 52 21 0 98 149 2 53 2.28e-17 80.9
Msa1007340 AT5G14000.2 34.211 152 88 4 12 153 1 150 3.84e-17 78.2
Msa1007340 AT2G43000.2 36.082 97 54 1 80 176 1 89 4.87e-17 79.0
Msa1007340 AT3G55210.1 30.556 144 86 3 19 148 11 154 4.15e-15 75.1
Msa1007340 AT3G04430.1 34.091 132 73 4 25 143 6 136 5.19e-13 67.4

Find 66 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGGGAAATTCATTAAT+TGG 0.105364 7_1:+6785498 Msa1007340:CDS
GCAATTGTTGCTTCAGTTAA+AGG 0.182371 7_1:-6786528 None:intergenic
TTATTCAGAGATGGCTAAAA+TGG 0.265253 7_1:+6785359 Msa1007340:intron
ATCTCTATTGCCTCCATTGT+TGG 0.290405 7_1:+6786326 Msa1007340:CDS
GATATCTCATCTGTGGTATA+TGG 0.312060 7_1:+6786642 Msa1007340:CDS
TTTGGTTTCTCTGTTTGATT+TGG 0.323737 7_1:-6786423 None:intergenic
ATTTGATGGTCCTTCTTTAG+AGG 0.329672 7_1:-6786295 None:intergenic
ACAAGGGAAATTCATTAATT+GGG 0.364746 7_1:+6785499 Msa1007340:CDS
TTCATCCTCTTCAAAACAAA+TGG 0.371961 7_1:+6786497 Msa1007340:CDS
CTGTTGGTCCTTTGACCAGT+TGG 0.374709 7_1:-6785426 None:intergenic
CTCTCCCAAAAGAAAACTCT+TGG 0.386693 7_1:-6786602 None:intergenic
GAGCTACTAATGCTGGCTAT+TGG 0.389330 7_1:+6785448 Msa1007340:CDS
CAATTGTTGCTTCAGTTAAA+GGG 0.406411 7_1:-6786527 None:intergenic
ATAGGTTGTGCTCAGGAAAA+AGG 0.408448 7_1:-6785629 None:intergenic
AGAGATGCAATAGTATTTGA+TGG 0.410698 7_1:-6786309 None:intergenic
GACATGCTTCAAAGGTGGTC+GGG 0.419512 7_1:+6786669 Msa1007340:CDS
TGTTGGTCCTTTGACCAGTT+GGG 0.420869 7_1:-6785425 None:intergenic
TTTCTCTGTTTGATTTGGAT+TGG 0.425619 7_1:-6786418 None:intergenic
TTTATAAGCTCTTCATCAGT+TGG 0.426096 7_1:-6784420 None:intergenic
AAAATGAATGGTTCAAAACT+TGG 0.427761 7_1:+6786261 Msa1007340:CDS
AATTCCTGACCATTGAGGTT+TGG 0.444618 7_1:-6786560 None:intergenic
AAATCAATACCTTGTCAAGA+AGG 0.466786 7_1:+6784440 Msa1007340:CDS
GAAATCTCAGAAGCTATCAT+TGG 0.467463 7_1:-6786730 None:intergenic
GCTGGCTATTGGAAAGCAAC+AGG 0.467708 7_1:+6785459 Msa1007340:CDS
CCTGACCATTGAGGTTTGGT+TGG 0.476475 7_1:-6786556 None:intergenic
GTCTTTGAGAAGCGTAATCA+TGG 0.493003 7_1:+6786234 Msa1007340:CDS
TATTCAGAGATGGCTAAAAT+GGG 0.503587 7_1:+6785360 Msa1007340:intron
CCAACCAAACCTCAATGGTC+AGG 0.513919 7_1:+6786556 Msa1007340:CDS
AATCATGGAAAGAAAATGAA+TGG 0.519050 7_1:+6786249 Msa1007340:CDS
TCTCCCAAAAGAAAACTCTT+GGG 0.526665 7_1:-6786601 None:intergenic
TTACCATTCCATGTGTGGAT+AGG 0.526862 7_1:-6785647 None:intergenic
ACCAACAGAGCTACTAATGC+TGG 0.528873 7_1:+6785441 Msa1007340:CDS
ATGGAAATGACATGCTTCAA+AGG 0.541226 7_1:+6786661 Msa1007340:CDS
AGGTCTAACTCCTCTAAAGA+AGG 0.542820 7_1:+6786285 Msa1007340:CDS
GCCAGCATTAGTAGCTCTGT+TGG 0.543274 7_1:-6785442 None:intergenic
TGATGAATTCCTGACCATTG+AGG 0.543983 7_1:-6786565 None:intergenic
CAACCTATCCACACATGGAA+TGG 0.547037 7_1:+6785644 Msa1007340:CDS
ACATGCTTCAAAGGTGGTCG+GGG 0.553685 7_1:+6786670 Msa1007340:CDS
TGATTCCAACCAAACCTCAA+TGG 0.559757 7_1:+6786551 Msa1007340:CDS
TGACATGCTTCAAAGGTGGT+CGG 0.565490 7_1:+6786668 Msa1007340:CDS
GTATTCATGCATGACCCAGT+TGG 0.566311 7_1:-6785574 None:intergenic
CAAAGACAAAGAGATTTACA+AGG 0.568333 7_1:+6785482 Msa1007340:CDS
CAATATTACCATTCCATGTG+TGG 0.569497 7_1:-6785652 None:intergenic
AATTCACCTGGCAAATCCCA+TGG 0.572720 7_1:-6784522 None:intergenic
GAAAAGGTCAAATTTCCCGC+TGG 0.582719 7_1:+6784384 Msa1007340:CDS
AGAGTGAGTTACCCTCCAAT+CGG 0.585613 7_1:-6785596 None:intergenic
GGTCATGCATGAATACCGAT+TGG 0.588791 7_1:+6785581 Msa1007340:CDS
GCTGCAAGTCGAGTAGAAGC+TGG 0.589005 7_1:-6786708 None:intergenic
CATGCATGAATACCGATTGG+AGG 0.592763 7_1:+6785584 Msa1007340:CDS
TGGAAAGAATCGATAACCAG+CGG 0.593934 7_1:-6784400 None:intergenic
CTAAAATGGGAGAAACAGAA+TGG 0.594315 7_1:+6785373 Msa1007340:CDS
TGAATGGTTCAAAACTTGGA+AGG 0.595179 7_1:+6786265 Msa1007340:CDS
GGAAAGAATCGATAACCAGC+GGG 0.598033 7_1:-6784399 None:intergenic
TGTGAACCATGGGATTTGCC+AGG 0.615720 7_1:+6784516 Msa1007340:CDS
ATGCATGAATACCGATTGGA+GGG 0.621001 7_1:+6785585 Msa1007340:CDS
TATGGAGAATAATCCAACAA+TGG 0.629197 7_1:-6786339 None:intergenic
TGTGTGGATAGGTTGTGCTC+AGG 0.631192 7_1:-6785636 None:intergenic
TGTCATCAACCTTCTTGACA+AGG 0.634308 7_1:-6784449 None:intergenic
TATGAATAAGTGTGAACCAT+GGG 0.641317 7_1:+6784506 Msa1007340:CDS
GGAGAATAATCCAACAATGG+AGG 0.643665 7_1:-6786336 None:intergenic
AAAGACAAAGAGATTTACAA+GGG 0.662925 7_1:+6785483 Msa1007340:CDS
TGATGCTGATATCTCATCTG+TGG 0.664657 7_1:+6786635 Msa1007340:CDS
GAAATGACATGCTTCAAAGG+TGG 0.674513 7_1:+6786664 Msa1007340:CDS
GAGCACAACCTATCCACACA+TGG 0.677713 7_1:+6785639 Msa1007340:CDS
ATATGAATAAGTGTGAACCA+TGG 0.681966 7_1:+6784505 Msa1007340:CDS
TACATAGGAAGAGCTCCGAG+CGG 0.756904 7_1:+6785543 Msa1007340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATAAAATATAAATTTT+AGG + chr7_1:6786043-6786062 Msa1007340:intron 0.0%
!!! ATTATAAAATATAAATTTTA+GGG + chr7_1:6786044-6786063 Msa1007340:intron 0.0%
!!! AATTATAAAATATAAATTTT+AGG + chr7_1:6786043-6786062 Msa1007340:intron 0.0%
!!! ATTATAAAATATAAATTTTA+GGG + chr7_1:6786044-6786063 Msa1007340:intron 0.0%
!! AAAATGAAATAAAAACAATT+TGG + chr7_1:6784971-6784990 Msa1007340:intron 10.0%
!!! AAAAAAAGTTACTTTTATTA+TGG - chr7_1:6786012-6786031 None:intergenic 10.0%
!! AAAATGAAATAAAAACAATT+TGG + chr7_1:6784971-6784990 Msa1007340:intron 10.0%
!!! AAAAAAAGTTACTTTTATTA+TGG - chr7_1:6786012-6786031 None:intergenic 10.0%
!!! GTGAATTTAATGTTTTTTAT+AGG + chr7_1:6784538-6784557 Msa1007340:intron 15.0%
!! TAAATATTATATTAGTAGTC+TGG + chr7_1:6784580-6784599 Msa1007340:intron 15.0%
!!! ACTTATTTCATTTTTTAAAG+TGG + chr7_1:6785246-6785265 Msa1007340:intron 15.0%
!!! TTATGCTTTCTTATTTTTTT+TGG + chr7_1:6785335-6785354 Msa1007340:intron 15.0%
!!! AGTTTACTTTATTTAGAAAA+AGG - chr7_1:6785973-6785992 None:intergenic 15.0%
!!! GTGAATTTAATGTTTTTTAT+AGG + chr7_1:6784538-6784557 Msa1007340:intron 15.0%
!! TAAATATTATATTAGTAGTC+TGG + chr7_1:6784580-6784599 Msa1007340:intron 15.0%
!!! ACTTATTTCATTTTTTAAAG+TGG + chr7_1:6785246-6785265 Msa1007340:intron 15.0%
!!! TTATGCTTTCTTATTTTTTT+TGG + chr7_1:6785335-6785354 Msa1007340:intron 15.0%
!!! AGTTTACTTTATTTAGAAAA+AGG - chr7_1:6785973-6785992 None:intergenic 15.0%
!! TAAAAAACATTAAATTCACC+TGG - chr7_1:6784537-6784556 None:intergenic 20.0%
!!! TTTAAAGTTGCTAAAAAAAG+AGG + chr7_1:6784677-6784696 Msa1007340:intron 20.0%
!! AAAAGAAGACTTAAATTATG+TGG + chr7_1:6784930-6784949 Msa1007340:intron 20.0%
!!! ATTTGATTTTCACTATTGTA+TGG - chr7_1:6786360-6786379 None:intergenic 20.0%
!! TAAAAAACATTAAATTCACC+TGG - chr7_1:6784537-6784556 None:intergenic 20.0%
!!! TTTAAAGTTGCTAAAAAAAG+AGG + chr7_1:6784677-6784696 Msa1007340:intron 20.0%
!! AAAAGAAGACTTAAATTATG+TGG + chr7_1:6784930-6784949 Msa1007340:intron 20.0%
!!! ATTTGATTTTCACTATTGTA+TGG - chr7_1:6786360-6786379 None:intergenic 20.0%
! TCGAAAAATGGAAATTGAAA+AGG + chr7_1:6784368-6784387 Msa1007340:CDS 25.0%
!!! CTTCATTTTTCATCTTAATG+TGG - chr7_1:6784863-6784882 None:intergenic 25.0%
! AAACACTATACAATGACATT+AGG + chr7_1:6784884-6784903 Msa1007340:intron 25.0%
! AAGAAAAAGAAGAAGAAAAG+TGG + chr7_1:6785049-6785068 Msa1007340:intron 25.0%
! AGATAACGACAATATATCTA+AGG - chr7_1:6785121-6785140 None:intergenic 25.0%
!!! TTTTTTGGTTTATTCAGAGA+TGG + chr7_1:6785350-6785369 Msa1007340:intron 25.0%
!!! AATGGTATTTTTTTTGTGTG+AGG + chr7_1:6785391-6785410 Msa1007340:CDS 25.0%
!!! ATGGTATTTTTTTTGTGTGA+GGG + chr7_1:6785392-6785411 Msa1007340:CDS 25.0%
! AAAGACAAAGAGATTTACAA+GGG + chr7_1:6785483-6785502 Msa1007340:CDS 25.0%
! TACAAGGGAAATTCATTAAT+TGG + chr7_1:6785498-6785517 Msa1007340:CDS 25.0%
! ACAAGGGAAATTCATTAATT+GGG + chr7_1:6785499-6785518 Msa1007340:CDS 25.0%
! ACAGATCTTTAGTAAATGTT+TGG - chr7_1:6785867-6785886 None:intergenic 25.0%
!!! ATAAATTTTAGGGAAACTAC+TGG + chr7_1:6786054-6786073 Msa1007340:intron 25.0%
! AATCATGGAAAGAAAATGAA+TGG + chr7_1:6786249-6786268 Msa1007340:CDS 25.0%
! AAAATGAATGGTTCAAAACT+TGG + chr7_1:6786261-6786280 Msa1007340:CDS 25.0%
! TCGAAAAATGGAAATTGAAA+AGG + chr7_1:6784368-6784387 Msa1007340:CDS 25.0%
!!! CTTCATTTTTCATCTTAATG+TGG - chr7_1:6784863-6784882 None:intergenic 25.0%
! AAACACTATACAATGACATT+AGG + chr7_1:6784884-6784903 Msa1007340:intron 25.0%
! AAGAAAAAGAAGAAGAAAAG+TGG + chr7_1:6785049-6785068 Msa1007340:intron 25.0%
! AGATAACGACAATATATCTA+AGG - chr7_1:6785121-6785140 None:intergenic 25.0%
!!! TTTTTTGGTTTATTCAGAGA+TGG + chr7_1:6785350-6785369 Msa1007340:intron 25.0%
!!! AATGGTATTTTTTTTGTGTG+AGG + chr7_1:6785391-6785410 Msa1007340:CDS 25.0%
!!! ATGGTATTTTTTTTGTGTGA+GGG + chr7_1:6785392-6785411 Msa1007340:CDS 25.0%
! AAAGACAAAGAGATTTACAA+GGG + chr7_1:6785483-6785502 Msa1007340:CDS 25.0%
! TACAAGGGAAATTCATTAAT+TGG + chr7_1:6785498-6785517 Msa1007340:CDS 25.0%
! ACAAGGGAAATTCATTAATT+GGG + chr7_1:6785499-6785518 Msa1007340:CDS 25.0%
! ACAGATCTTTAGTAAATGTT+TGG - chr7_1:6785867-6785886 None:intergenic 25.0%
!!! ATAAATTTTAGGGAAACTAC+TGG + chr7_1:6786054-6786073 Msa1007340:intron 25.0%
! AATCATGGAAAGAAAATGAA+TGG + chr7_1:6786249-6786268 Msa1007340:CDS 25.0%
! AAAATGAATGGTTCAAAACT+TGG + chr7_1:6786261-6786280 Msa1007340:CDS 25.0%
!! TTCAATTTCCATTTTTCGAC+TGG - chr7_1:6784367-6784386 None:intergenic 30.0%
TTTATAAGCTCTTCATCAGT+TGG - chr7_1:6784423-6784442 None:intergenic 30.0%
AAATCAATACCTTGTCAAGA+AGG + chr7_1:6784440-6784459 Msa1007340:CDS 30.0%
ATATGAATAAGTGTGAACCA+TGG + chr7_1:6784505-6784524 Msa1007340:CDS 30.0%
TATGAATAAGTGTGAACCAT+GGG + chr7_1:6784506-6784525 Msa1007340:CDS 30.0%
!!! ACTACGTGTTGGATTTTTTT+TGG + chr7_1:6784612-6784631 Msa1007340:intron 30.0%
ATGTGGTGTATATTTGATTC+AGG - chr7_1:6784846-6784865 None:intergenic 30.0%
!! ACAATTTGGACTAGTGATTT+CGG + chr7_1:6784985-6785004 Msa1007340:intron 30.0%
TTGTCGTTATCTTACTTTGA+TGG + chr7_1:6785129-6785148 Msa1007340:intron 30.0%
TTATTCAGAGATGGCTAAAA+TGG + chr7_1:6785359-6785378 Msa1007340:intron 30.0%
TATTCAGAGATGGCTAAAAT+GGG + chr7_1:6785360-6785379 Msa1007340:intron 30.0%
CAAAGACAAAGAGATTTACA+AGG + chr7_1:6785482-6785501 Msa1007340:CDS 30.0%
AATTGGGATGAAAAAAACAC+TGG + chr7_1:6785515-6785534 Msa1007340:CDS 30.0%
!!! AAAACACTGGTTTTCTACAT+AGG + chr7_1:6785528-6785547 Msa1007340:CDS 30.0%
ATGATTTATACTCTGTCTAC+TGG + chr7_1:6785704-6785723 Msa1007340:intron 30.0%
ACGTAATTCTATCAAACACA+TGG - chr7_1:6785760-6785779 None:intergenic 30.0%
!!! AACCTTTTTTGTAGAGTGAA+TGG + chr7_1:6786199-6786218 Msa1007340:intron 30.0%
!!! ACCTTTTTTGTAGAGTGAAT+GGG + chr7_1:6786200-6786219 Msa1007340:intron 30.0%
AGAGATGCAATAGTATTTGA+TGG - chr7_1:6786312-6786331 None:intergenic 30.0%
TATGGAGAATAATCCAACAA+TGG - chr7_1:6786342-6786361 None:intergenic 30.0%
!! TTTCTCTGTTTGATTTGGAT+TGG - chr7_1:6786421-6786440 None:intergenic 30.0%
! TTTGGTTTCTCTGTTTGATT+TGG - chr7_1:6786426-6786445 None:intergenic 30.0%
! ATGTTGTCTTCTTGTGTTTT+TGG - chr7_1:6786444-6786463 None:intergenic 30.0%
TTCATCCTCTTCAAAACAAA+TGG + chr7_1:6786497-6786516 Msa1007340:CDS 30.0%
!!! AACATCCATTTGTTTTGAAG+AGG - chr7_1:6786505-6786524 None:intergenic 30.0%
! CAATTGTTGCTTCAGTTAAA+GGG - chr7_1:6786530-6786549 None:intergenic 30.0%
!! TTCAATTTCCATTTTTCGAC+TGG - chr7_1:6784367-6784386 None:intergenic 30.0%
TTTATAAGCTCTTCATCAGT+TGG - chr7_1:6784423-6784442 None:intergenic 30.0%
AAATCAATACCTTGTCAAGA+AGG + chr7_1:6784440-6784459 Msa1007340:CDS 30.0%
ATATGAATAAGTGTGAACCA+TGG + chr7_1:6784505-6784524 Msa1007340:CDS 30.0%
TATGAATAAGTGTGAACCAT+GGG + chr7_1:6784506-6784525 Msa1007340:CDS 30.0%
!!! ACTACGTGTTGGATTTTTTT+TGG + chr7_1:6784612-6784631 Msa1007340:intron 30.0%
ATGTGGTGTATATTTGATTC+AGG - chr7_1:6784846-6784865 None:intergenic 30.0%
!! ACAATTTGGACTAGTGATTT+CGG + chr7_1:6784985-6785004 Msa1007340:intron 30.0%
TTGTCGTTATCTTACTTTGA+TGG + chr7_1:6785129-6785148 Msa1007340:intron 30.0%
TTATTCAGAGATGGCTAAAA+TGG + chr7_1:6785359-6785378 Msa1007340:intron 30.0%
TATTCAGAGATGGCTAAAAT+GGG + chr7_1:6785360-6785379 Msa1007340:intron 30.0%
CAAAGACAAAGAGATTTACA+AGG + chr7_1:6785482-6785501 Msa1007340:CDS 30.0%
AATTGGGATGAAAAAAACAC+TGG + chr7_1:6785515-6785534 Msa1007340:CDS 30.0%
!!! AAAACACTGGTTTTCTACAT+AGG + chr7_1:6785528-6785547 Msa1007340:CDS 30.0%
ATGATTTATACTCTGTCTAC+TGG + chr7_1:6785704-6785723 Msa1007340:intron 30.0%
ACGTAATTCTATCAAACACA+TGG - chr7_1:6785760-6785779 None:intergenic 30.0%
!!! AACCTTTTTTGTAGAGTGAA+TGG + chr7_1:6786199-6786218 Msa1007340:intron 30.0%
!!! ACCTTTTTTGTAGAGTGAAT+GGG + chr7_1:6786200-6786219 Msa1007340:intron 30.0%
AGAGATGCAATAGTATTTGA+TGG - chr7_1:6786312-6786331 None:intergenic 30.0%
TATGGAGAATAATCCAACAA+TGG - chr7_1:6786342-6786361 None:intergenic 30.0%
!! TTTCTCTGTTTGATTTGGAT+TGG - chr7_1:6786421-6786440 None:intergenic 30.0%
! TTTGGTTTCTCTGTTTGATT+TGG - chr7_1:6786426-6786445 None:intergenic 30.0%
! ATGTTGTCTTCTTGTGTTTT+TGG - chr7_1:6786444-6786463 None:intergenic 30.0%
TTCATCCTCTTCAAAACAAA+TGG + chr7_1:6786497-6786516 Msa1007340:CDS 30.0%
!!! AACATCCATTTGTTTTGAAG+AGG - chr7_1:6786505-6786524 None:intergenic 30.0%
! CAATTGTTGCTTCAGTTAAA+GGG - chr7_1:6786530-6786549 None:intergenic 30.0%
GAATGTTTCCAGTCGAAAAA+TGG + chr7_1:6784356-6784375 Msa1007340:CDS 35.0%
GGATTTGAAAAACTACGTGT+TGG + chr7_1:6784601-6784620 Msa1007340:intron 35.0%
!! CAATTTGGACTAGTGATTTC+GGG + chr7_1:6784986-6785005 Msa1007340:intron 35.0%
CTTCTAGATCTACCAATGAA+GGG - chr7_1:6785032-6785051 None:intergenic 35.0%
TCTTCTAGATCTACCAATGA+AGG - chr7_1:6785033-6785052 None:intergenic 35.0%
GTAAATTTAACCACGTCTAG+TGG - chr7_1:6785228-6785247 None:intergenic 35.0%
CTAAAATGGGAGAAACAGAA+TGG + chr7_1:6785373-6785392 Msa1007340:CDS 35.0%
AAAAATACCCAACTGGTCAA+AGG + chr7_1:6785418-6785437 Msa1007340:CDS 35.0%
CAATATTACCATTCCATGTG+TGG - chr7_1:6785655-6785674 None:intergenic 35.0%
ACCCATTCACTCTACAAAAA+AGG - chr7_1:6786204-6786223 None:intergenic 35.0%
TGAATGGTTCAAAACTTGGA+AGG + chr7_1:6786265-6786284 Msa1007340:CDS 35.0%
! ATTTGATGGTCCTTCTTTAG+AGG - chr7_1:6786298-6786317 None:intergenic 35.0%
! GCAATTGTTGCTTCAGTTAA+AGG - chr7_1:6786531-6786550 None:intergenic 35.0%
! TTCTCCCAAGAGTTTTCTTT+TGG + chr7_1:6786597-6786616 Msa1007340:CDS 35.0%
! TCTCCCAAGAGTTTTCTTTT+GGG + chr7_1:6786598-6786617 Msa1007340:CDS 35.0%
TCTCCCAAAAGAAAACTCTT+GGG - chr7_1:6786604-6786623 None:intergenic 35.0%
GATATCTCATCTGTGGTATA+TGG + chr7_1:6786642-6786661 Msa1007340:CDS 35.0%
ATGGAAATGACATGCTTCAA+AGG + chr7_1:6786661-6786680 Msa1007340:CDS 35.0%
GAATGTTTCCAGTCGAAAAA+TGG + chr7_1:6784356-6784375 Msa1007340:CDS 35.0%
GGATTTGAAAAACTACGTGT+TGG + chr7_1:6784601-6784620 Msa1007340:intron 35.0%
!! CAATTTGGACTAGTGATTTC+GGG + chr7_1:6784986-6785005 Msa1007340:intron 35.0%
CTTCTAGATCTACCAATGAA+GGG - chr7_1:6785032-6785051 None:intergenic 35.0%
TCTTCTAGATCTACCAATGA+AGG - chr7_1:6785033-6785052 None:intergenic 35.0%
GTAAATTTAACCACGTCTAG+TGG - chr7_1:6785228-6785247 None:intergenic 35.0%
CTAAAATGGGAGAAACAGAA+TGG + chr7_1:6785373-6785392 Msa1007340:CDS 35.0%
AAAAATACCCAACTGGTCAA+AGG + chr7_1:6785418-6785437 Msa1007340:CDS 35.0%
CAATATTACCATTCCATGTG+TGG - chr7_1:6785655-6785674 None:intergenic 35.0%
ACCCATTCACTCTACAAAAA+AGG - chr7_1:6786204-6786223 None:intergenic 35.0%
TGAATGGTTCAAAACTTGGA+AGG + chr7_1:6786265-6786284 Msa1007340:CDS 35.0%
! ATTTGATGGTCCTTCTTTAG+AGG - chr7_1:6786298-6786317 None:intergenic 35.0%
! GCAATTGTTGCTTCAGTTAA+AGG - chr7_1:6786531-6786550 None:intergenic 35.0%
! TTCTCCCAAGAGTTTTCTTT+TGG + chr7_1:6786597-6786616 Msa1007340:CDS 35.0%
! TCTCCCAAGAGTTTTCTTTT+GGG + chr7_1:6786598-6786617 Msa1007340:CDS 35.0%
TCTCCCAAAAGAAAACTCTT+GGG - chr7_1:6786604-6786623 None:intergenic 35.0%
GATATCTCATCTGTGGTATA+TGG + chr7_1:6786642-6786661 Msa1007340:CDS 35.0%
ATGGAAATGACATGCTTCAA+AGG + chr7_1:6786661-6786680 Msa1007340:CDS 35.0%
TGGAAAGAATCGATAACCAG+CGG - chr7_1:6784403-6784422 None:intergenic 40.0%
TGTCATCAACCTTCTTGACA+AGG - chr7_1:6784452-6784471 None:intergenic 40.0%
!! CTATATCATTGATGACGCCA+AGG + chr7_1:6784779-6784798 Msa1007340:intron 40.0%
CCAGATCTAATCAATGACCT+TGG - chr7_1:6784799-6784818 None:intergenic 40.0%
! CCAAGGTCATTGATTAGATC+TGG + chr7_1:6784796-6784815 Msa1007340:intron 40.0%
AAACCTAAACCACCCTTCAT+TGG + chr7_1:6785017-6785036 Msa1007340:intron 40.0%
! AAGAAAAGTGGTGACGAGTA+GGG + chr7_1:6785061-6785080 Msa1007340:intron 40.0%
GACACATTATGATGTGTCAG+TGG - chr7_1:6785183-6785202 None:intergenic 40.0%
CTGACACATCATAATGTGTC+AGG + chr7_1:6785183-6785202 Msa1007340:intron 40.0%
AGGGACAAAAAATACCCAAC+TGG + chr7_1:6785411-6785430 Msa1007340:CDS 40.0%
! ATGCATGAATACCGATTGGA+GGG + chr7_1:6785585-6785604 Msa1007340:CDS 40.0%
ATAGGTTGTGCTCAGGAAAA+AGG - chr7_1:6785632-6785651 None:intergenic 40.0%
TTACCATTCCATGTGTGGAT+AGG - chr7_1:6785650-6785669 None:intergenic 40.0%
! GTCTTTGAGAAGCGTAATCA+TGG + chr7_1:6786234-6786253 Msa1007340:CDS 40.0%
! AGGTCTAACTCCTCTAAAGA+AGG + chr7_1:6786285-6786304 Msa1007340:CDS 40.0%
ATCTCTATTGCCTCCATTGT+TGG + chr7_1:6786326-6786345 Msa1007340:CDS 40.0%
GGAGAATAATCCAACAATGG+AGG - chr7_1:6786339-6786358 None:intergenic 40.0%
TGATTCCAACCAAACCTCAA+TGG + chr7_1:6786551-6786570 Msa1007340:CDS 40.0%
AATTCCTGACCATTGAGGTT+TGG - chr7_1:6786563-6786582 None:intergenic 40.0%
TGATGAATTCCTGACCATTG+AGG - chr7_1:6786568-6786587 None:intergenic 40.0%
CTCTCCCAAAAGAAAACTCT+TGG - chr7_1:6786605-6786624 None:intergenic 40.0%
TGATGCTGATATCTCATCTG+TGG + chr7_1:6786635-6786654 Msa1007340:CDS 40.0%
GAAATGACATGCTTCAAAGG+TGG + chr7_1:6786664-6786683 Msa1007340:CDS 40.0%
TGGAAAGAATCGATAACCAG+CGG - chr7_1:6784403-6784422 None:intergenic 40.0%
TGTCATCAACCTTCTTGACA+AGG - chr7_1:6784452-6784471 None:intergenic 40.0%
!! CTATATCATTGATGACGCCA+AGG + chr7_1:6784779-6784798 Msa1007340:intron 40.0%
CCAGATCTAATCAATGACCT+TGG - chr7_1:6784799-6784818 None:intergenic 40.0%
! CCAAGGTCATTGATTAGATC+TGG + chr7_1:6784796-6784815 Msa1007340:intron 40.0%
AAACCTAAACCACCCTTCAT+TGG + chr7_1:6785017-6785036 Msa1007340:intron 40.0%
! AAGAAAAGTGGTGACGAGTA+GGG + chr7_1:6785061-6785080 Msa1007340:intron 40.0%
GACACATTATGATGTGTCAG+TGG - chr7_1:6785183-6785202 None:intergenic 40.0%
CTGACACATCATAATGTGTC+AGG + chr7_1:6785183-6785202 Msa1007340:intron 40.0%
AGGGACAAAAAATACCCAAC+TGG + chr7_1:6785411-6785430 Msa1007340:CDS 40.0%
! ATGCATGAATACCGATTGGA+GGG + chr7_1:6785585-6785604 Msa1007340:CDS 40.0%
ATAGGTTGTGCTCAGGAAAA+AGG - chr7_1:6785632-6785651 None:intergenic 40.0%
TTACCATTCCATGTGTGGAT+AGG - chr7_1:6785650-6785669 None:intergenic 40.0%
! GTCTTTGAGAAGCGTAATCA+TGG + chr7_1:6786234-6786253 Msa1007340:CDS 40.0%
! AGGTCTAACTCCTCTAAAGA+AGG + chr7_1:6786285-6786304 Msa1007340:CDS 40.0%
ATCTCTATTGCCTCCATTGT+TGG + chr7_1:6786326-6786345 Msa1007340:CDS 40.0%
GGAGAATAATCCAACAATGG+AGG - chr7_1:6786339-6786358 None:intergenic 40.0%
TGATTCCAACCAAACCTCAA+TGG + chr7_1:6786551-6786570 Msa1007340:CDS 40.0%
AATTCCTGACCATTGAGGTT+TGG - chr7_1:6786563-6786582 None:intergenic 40.0%
TGATGAATTCCTGACCATTG+AGG - chr7_1:6786568-6786587 None:intergenic 40.0%
CTCTCCCAAAAGAAAACTCT+TGG - chr7_1:6786605-6786624 None:intergenic 40.0%
TGATGCTGATATCTCATCTG+TGG + chr7_1:6786635-6786654 Msa1007340:CDS 40.0%
GAAATGACATGCTTCAAAGG+TGG + chr7_1:6786664-6786683 Msa1007340:CDS 40.0%
GAAAAGGTCAAATTTCCCGC+TGG + chr7_1:6784384-6784403 Msa1007340:CDS 45.0%
GGAAAGAATCGATAACCAGC+GGG - chr7_1:6784402-6784421 None:intergenic 45.0%
AATTCACCTGGCAAATCCCA+TGG - chr7_1:6784525-6784544 None:intergenic 45.0%
CTACCAATGAAGGGTGGTTT+AGG - chr7_1:6785023-6785042 None:intergenic 45.0%
CTAGATCTACCAATGAAGGG+TGG - chr7_1:6785029-6785048 None:intergenic 45.0%
! GAAGAAAAGTGGTGACGAGT+AGG + chr7_1:6785060-6785079 Msa1007340:intron 45.0%
TGTTGGTCCTTTGACCAGTT+GGG - chr7_1:6785428-6785447 None:intergenic 45.0%
ACCAACAGAGCTACTAATGC+TGG + chr7_1:6785441-6785460 Msa1007340:CDS 45.0%
! GAGCTACTAATGCTGGCTAT+TGG + chr7_1:6785448-6785467 Msa1007340:CDS 45.0%
! CAGTTGGATTTTTCACCGCT+CGG - chr7_1:6785561-6785580 None:intergenic 45.0%
GAGCGGTGAAAAATCCAACT+GGG + chr7_1:6785560-6785579 Msa1007340:CDS 45.0%
GTATTCATGCATGACCCAGT+TGG - chr7_1:6785577-6785596 None:intergenic 45.0%
GGTCATGCATGAATACCGAT+TGG + chr7_1:6785581-6785600 Msa1007340:CDS 45.0%
! CATGCATGAATACCGATTGG+AGG + chr7_1:6785584-6785603 Msa1007340:CDS 45.0%
AGAGTGAGTTACCCTCCAAT+CGG - chr7_1:6785599-6785618 None:intergenic 45.0%
CAACCTATCCACACATGGAA+TGG + chr7_1:6785644-6785663 Msa1007340:CDS 45.0%
TGACATGCTTCAAAGGTGGT+CGG + chr7_1:6786668-6786687 Msa1007340:CDS 45.0%
GAAAAGGTCAAATTTCCCGC+TGG + chr7_1:6784384-6784403 Msa1007340:CDS 45.0%
GGAAAGAATCGATAACCAGC+GGG - chr7_1:6784402-6784421 None:intergenic 45.0%
AATTCACCTGGCAAATCCCA+TGG - chr7_1:6784525-6784544 None:intergenic 45.0%
CTACCAATGAAGGGTGGTTT+AGG - chr7_1:6785023-6785042 None:intergenic 45.0%
CTAGATCTACCAATGAAGGG+TGG - chr7_1:6785029-6785048 None:intergenic 45.0%
! GAAGAAAAGTGGTGACGAGT+AGG + chr7_1:6785060-6785079 Msa1007340:intron 45.0%
TGTTGGTCCTTTGACCAGTT+GGG - chr7_1:6785428-6785447 None:intergenic 45.0%
ACCAACAGAGCTACTAATGC+TGG + chr7_1:6785441-6785460 Msa1007340:CDS 45.0%
! GAGCTACTAATGCTGGCTAT+TGG + chr7_1:6785448-6785467 Msa1007340:CDS 45.0%
! CAGTTGGATTTTTCACCGCT+CGG - chr7_1:6785561-6785580 None:intergenic 45.0%
GAGCGGTGAAAAATCCAACT+GGG + chr7_1:6785560-6785579 Msa1007340:CDS 45.0%
GTATTCATGCATGACCCAGT+TGG - chr7_1:6785577-6785596 None:intergenic 45.0%
GGTCATGCATGAATACCGAT+TGG + chr7_1:6785581-6785600 Msa1007340:CDS 45.0%
! CATGCATGAATACCGATTGG+AGG + chr7_1:6785584-6785603 Msa1007340:CDS 45.0%
AGAGTGAGTTACCCTCCAAT+CGG - chr7_1:6785599-6785618 None:intergenic 45.0%
CAACCTATCCACACATGGAA+TGG + chr7_1:6785644-6785663 Msa1007340:CDS 45.0%
TGACATGCTTCAAAGGTGGT+CGG + chr7_1:6786668-6786687 Msa1007340:CDS 45.0%
TGTGAACCATGGGATTTGCC+AGG + chr7_1:6784516-6784535 Msa1007340:CDS 50.0%
! AAGTGGTGACGAGTAGGGTT+TGG + chr7_1:6785066-6785085 Msa1007340:intron 50.0%
TTGGCGAGGAGAAAAGTGAG+TGG + chr7_1:6785085-6785104 Msa1007340:intron 50.0%
!! CACGTCTAGTGGTGTCATGT+TGG - chr7_1:6785217-6785236 None:intergenic 50.0%
CAACATGACACCACTAGACG+TGG + chr7_1:6785215-6785234 Msa1007340:intron 50.0%
CTGTTGGTCCTTTGACCAGT+TGG - chr7_1:6785429-6785448 None:intergenic 50.0%
! GCCAGCATTAGTAGCTCTGT+TGG - chr7_1:6785445-6785464 None:intergenic 50.0%
GCTGGCTATTGGAAAGCAAC+AGG + chr7_1:6785459-6785478 Msa1007340:CDS 50.0%
TACATAGGAAGAGCTCCGAG+CGG + chr7_1:6785543-6785562 Msa1007340:CDS 50.0%
CGAGCGGTGAAAAATCCAAC+TGG + chr7_1:6785559-6785578 Msa1007340:CDS 50.0%
TGTGTGGATAGGTTGTGCTC+AGG - chr7_1:6785639-6785658 None:intergenic 50.0%
GAGCACAACCTATCCACACA+TGG + chr7_1:6785639-6785658 Msa1007340:CDS 50.0%
! CCTGACCATTGAGGTTTGGT+TGG - chr7_1:6786559-6786578 None:intergenic 50.0%
CCAACCAAACCTCAATGGTC+AGG + chr7_1:6786556-6786575 Msa1007340:CDS 50.0%
GACATGCTTCAAAGGTGGTC+GGG + chr7_1:6786669-6786688 Msa1007340:CDS 50.0%
ACATGCTTCAAAGGTGGTCG+GGG + chr7_1:6786670-6786689 Msa1007340:CDS 50.0%
TGTGAACCATGGGATTTGCC+AGG + chr7_1:6784516-6784535 Msa1007340:CDS 50.0%
! AAGTGGTGACGAGTAGGGTT+TGG + chr7_1:6785066-6785085 Msa1007340:intron 50.0%
TTGGCGAGGAGAAAAGTGAG+TGG + chr7_1:6785085-6785104 Msa1007340:intron 50.0%
!! CACGTCTAGTGGTGTCATGT+TGG - chr7_1:6785217-6785236 None:intergenic 50.0%
CAACATGACACCACTAGACG+TGG + chr7_1:6785215-6785234 Msa1007340:intron 50.0%
CTGTTGGTCCTTTGACCAGT+TGG - chr7_1:6785429-6785448 None:intergenic 50.0%
! GCCAGCATTAGTAGCTCTGT+TGG - chr7_1:6785445-6785464 None:intergenic 50.0%
GCTGGCTATTGGAAAGCAAC+AGG + chr7_1:6785459-6785478 Msa1007340:CDS 50.0%
TACATAGGAAGAGCTCCGAG+CGG + chr7_1:6785543-6785562 Msa1007340:CDS 50.0%
CGAGCGGTGAAAAATCCAAC+TGG + chr7_1:6785559-6785578 Msa1007340:CDS 50.0%
TGTGTGGATAGGTTGTGCTC+AGG - chr7_1:6785639-6785658 None:intergenic 50.0%
GAGCACAACCTATCCACACA+TGG + chr7_1:6785639-6785658 Msa1007340:CDS 50.0%
! CCTGACCATTGAGGTTTGGT+TGG - chr7_1:6786559-6786578 None:intergenic 50.0%
CCAACCAAACCTCAATGGTC+AGG + chr7_1:6786556-6786575 Msa1007340:CDS 50.0%
GACATGCTTCAAAGGTGGTC+GGG + chr7_1:6786669-6786688 Msa1007340:CDS 50.0%
ACATGCTTCAAAGGTGGTCG+GGG + chr7_1:6786670-6786689 Msa1007340:CDS 50.0%
GCTGCAAGTCGAGTAGAAGC+TGG - chr7_1:6786711-6786730 None:intergenic 55.0%
GCTGCAAGTCGAGTAGAAGC+TGG - chr7_1:6786711-6786730 None:intergenic 55.0%
GTGACGAGTAGGGTTTGGCG+AGG + chr7_1:6785071-6785090 Msa1007340:intron 60.0%
GTGACGAGTAGGGTTTGGCG+AGG + chr7_1:6785071-6785090 Msa1007340:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 6784342 6786746 6784342 ID=Msa1007340;Name=Msa1007340
chr7_1 mRNA 6784342 6786746 6784342 ID=Msa1007340-mRNA-1;Parent=Msa1007340;Name=Msa1007340-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|0.33|1|1|3|0|342
chr7_1 exon 6784342 6784537 6784342 ID=Msa1007340-mRNA-1:exon:1998;Parent=Msa1007340-mRNA-1
chr7_1 exon 6785367 6785665 6785367 ID=Msa1007340-mRNA-1:exon:1999;Parent=Msa1007340-mRNA-1
chr7_1 exon 6786213 6786746 6786213 ID=Msa1007340-mRNA-1:exon:2000;Parent=Msa1007340-mRNA-1
chr7_1 CDS 6784342 6784537 6784342 ID=Msa1007340-mRNA-1:cds;Parent=Msa1007340-mRNA-1
chr7_1 CDS 6785367 6785665 6785367 ID=Msa1007340-mRNA-1:cds;Parent=Msa1007340-mRNA-1
chr7_1 CDS 6786213 6786746 6786213 ID=Msa1007340-mRNA-1:cds;Parent=Msa1007340-mRNA-1
Gene Sequence

>Msa1007340

ATGGGATCAAATGAGAATGTTTCCAGTCGAAAAATGGAAATTGAAAAGGTCAAATTTCCCGCTGGTTATCGATTCTTTCCAACTGATGAAGAGCTTATAAATCAATACCTTGTCAAGAAGGTTGATGACAATAGCTTCTGTGCTATAGATATTGATGAAGCTGATATGAATAAGTGTGAACCATGGGATTTGCCAGAGATGGCTAAAATGGGAGAAACAGAATGGTATTTTTTTTGTGTGAGGGACAAAAAATACCCAACTGGTCAAAGGACCAACAGAGCTACTAATGCTGGCTATTGGAAAGCAACAGGCAAAGACAAAGAGATTTACAAGGGAAATTCATTAATTGGGATGAAAAAAACACTGGTTTTCTACATAGGAAGAGCTCCGAGCGGTGAAAAATCCAACTGGGTCATGCATGAATACCGATTGGAGGGTAACTCACTCTCTAAGCACAACCTTTTTCCTGAGCACAACCTATCCACACATGGAATGAGTGAATGGGTTGTCACTAGAGTCTTTGAGAAGCGTAATCATGGAAAGAAAATGAATGGTTCAAAACTTGGAAGGTCTAACTCCTCTAAAGAAGGACCATCAAATACTATTGCATCTCTATTGCCTCCATTGTTGGATTATTCTCCATACAATAGTGAAAATCAAATCACTAATTCTGATTTCTCTCATGTGTTGAATTCATTCACCAATCCAAATCAAACAGAGAAACCAAAAACACAAGAAGACAACATTGTTCATAACAATGAAACTAGTATCATGAACATTTCATCCTCTTCAAAACAAATGGATGTTTACCCTTTAACTGAAGCAACAATTGCTGATTCCAACCAAACCTCAATGGTCAGGAATTCATCAAACTTTTTCTTCTCCCAAGAGTTTTCTTTTGGGAGAGACTTTGATGCTGATGCTGATATCTCATCTGTGGTATATGGAAATGACATGCTTCAAAGGTGGTCGGGGAATCAAGATTTGTCACCAGCTTCTACTCGACTTGCAGCCAATGATAGCTTCTGA
Protein sequence

>Msa1007340

MGSNENVSSRKMEIEKVKFPAGYRFFPTDEELINQYLVKKVDDNSFCAIDIDEADMNKCEPWDLPEMAKMGETEWYFFCVRDKKYPTGQRTNRATNAGYWKATGKDKEIYKGNSLIGMKKTLVFYIGRAPSGEKSNWVMHEYRLEGNSLSKHNLFPEHNLSTHGMSEWVVTRVFEKRNHGKKMNGSKLGRSNSSKEGPSNTIASLLPPLLDYSPYNSENQITNSDFSHVLNSFTNPNQTEKPKTQEDNIVHNNETSIMNISSSSKQMDVYPLTEATIADSNQTSMVRNSSNFFFSQEFSFGRDFDADADISSVVYGNDMLQRWSGNQDLSPASTRLAANDSF*