Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008580 | RHN44387.1 | 90.426 | 94 | 9 | 0 | 34 | 127 | 1 | 94 | 1.22e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008580 | sp|O48686|SNL3_ARATH | 47.222 | 108 | 50 | 2 | 19 | 121 | 4 | 109 | 4.72e-24 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008580 | A0A396H0G0 | 90.426 | 94 | 9 | 0 | 34 | 127 | 1 | 94 | 5.82e-53 | 172 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1008580 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008580 | MtrunA17_Chr7g0218911 | 90.426 | 94 | 9 | 0 | 34 | 127 | 1 | 94 | 1.12e-56 | 172 |
| Msa1008580 | MtrunA17_Chr8g0364231 | 43.396 | 106 | 55 | 1 | 22 | 122 | 33 | 138 | 1.59e-23 | 94.7 |
| Msa1008580 | MtrunA17_Chr5g0415031 | 44.545 | 110 | 52 | 2 | 17 | 121 | 33 | 138 | 1.91e-23 | 94.4 |
| Msa1008580 | MtrunA17_Chr6g0452001 | 44.037 | 109 | 52 | 2 | 21 | 122 | 53 | 159 | 2.21e-23 | 94.4 |
| Msa1008580 | MtrunA17_Chr1g0206781 | 48.718 | 78 | 40 | 0 | 22 | 99 | 2 | 79 | 2.88e-19 | 77.4 |
| Msa1008580 | MtrunA17_Chr6g0452021 | 42.453 | 106 | 56 | 2 | 21 | 122 | 33 | 137 | 4.20e-19 | 82.0 |
| Msa1008580 | MtrunA17_Chr1g0205861 | 40.244 | 82 | 49 | 0 | 18 | 99 | 3 | 84 | 7.21e-18 | 73.9 |
| Msa1008580 | MtrunA17_Chr1g0206771 | 46.753 | 77 | 39 | 1 | 28 | 102 | 13 | 89 | 1.10e-17 | 74.7 |
| Msa1008580 | MtrunA17_Chr1g0206771 | 43.478 | 69 | 39 | 0 | 31 | 99 | 95 | 163 | 3.13e-13 | 63.2 |
| Msa1008580 | MtrunA17_Chr8g0364021 | 39.024 | 82 | 50 | 0 | 19 | 100 | 32 | 113 | 4.01e-16 | 72.0 |
| Msa1008580 | MtrunA17_Chr1g0205811 | 43.210 | 81 | 46 | 0 | 21 | 101 | 4 | 84 | 3.26e-15 | 67.0 |
| Msa1008580 | MtrunA17_Chr4g0075861 | 39.326 | 89 | 47 | 1 | 35 | 116 | 176 | 264 | 1.23e-14 | 68.9 |
| Msa1008580 | MtrunA17_Chr4g0075861 | 34.951 | 103 | 63 | 2 | 21 | 123 | 2 | 100 | 1.70e-12 | 62.8 |
| Msa1008580 | MtrunA17_Chr4g0075861 | 35.443 | 79 | 51 | 0 | 23 | 101 | 81 | 159 | 2.02e-11 | 60.1 |
| Msa1008580 | MtrunA17_Chr3g0077861 | 40.000 | 80 | 47 | 1 | 25 | 103 | 84 | 163 | 1.90e-14 | 66.2 |
| Msa1008580 | MtrunA17_Chr4g0075971 | 39.326 | 89 | 47 | 1 | 35 | 116 | 176 | 264 | 3.92e-14 | 67.8 |
| Msa1008580 | MtrunA17_Chr4g0075971 | 34.951 | 103 | 63 | 2 | 21 | 123 | 2 | 100 | 1.37e-12 | 63.5 |
| Msa1008580 | MtrunA17_Chr4g0075971 | 35.443 | 79 | 51 | 0 | 23 | 101 | 81 | 159 | 3.74e-11 | 59.3 |
| Msa1008580 | MtrunA17_Chr2g0328701 | 33.333 | 117 | 71 | 3 | 7 | 123 | 8 | 117 | 2.41e-13 | 62.4 |
| Msa1008580 | MtrunA17_Chr7g0218891 | 41.975 | 81 | 45 | 1 | 32 | 110 | 186 | 266 | 2.44e-13 | 64.7 |
| Msa1008580 | MtrunA17_Chr7g0218891 | 38.272 | 81 | 48 | 1 | 23 | 101 | 5 | 85 | 2.20e-12 | 62.0 |
| Msa1008580 | MtrunA17_Chr3g0077891 | 45.714 | 70 | 37 | 1 | 31 | 99 | 99 | 168 | 3.27e-13 | 63.2 |
| Msa1008580 | MtrunA17_Chr3g0077891 | 34.234 | 111 | 63 | 2 | 25 | 125 | 2 | 112 | 1.60e-11 | 58.5 |
| Msa1008580 | MtrunA17_Chr1g0205821 | 29.907 | 107 | 70 | 1 | 20 | 121 | 2 | 108 | 6.80e-13 | 62.4 |
| Msa1008580 | MtrunA17_Chr1g0205821 | 43.478 | 69 | 39 | 0 | 32 | 100 | 100 | 168 | 1.05e-11 | 58.9 |
| Msa1008580 | MtrunA17_Chr3g0077911 | 40.260 | 77 | 45 | 1 | 25 | 100 | 84 | 160 | 7.60e-13 | 61.6 |
| Msa1008580 | MtrunA17_Chr3g0077941 | 42.308 | 78 | 44 | 1 | 25 | 101 | 2 | 79 | 3.14e-12 | 60.5 |
| Msa1008580 | MtrunA17_Chr3g0077941 | 41.667 | 72 | 41 | 1 | 31 | 101 | 98 | 169 | 8.58e-12 | 59.3 |
| Msa1008580 | MtrunA17_Chr1g0209201 | 49.153 | 59 | 29 | 1 | 35 | 93 | 20 | 77 | 3.46e-12 | 59.7 |
| Msa1008580 | MtrunA17_Chr1g0205801 | 42.254 | 71 | 41 | 0 | 31 | 101 | 12 | 82 | 5.92e-12 | 58.2 |
| Msa1008580 | MtrunA17_Chr3g0077811 | 41.026 | 78 | 45 | 1 | 25 | 101 | 7 | 84 | 1.49e-11 | 57.4 |
| Msa1008580 | MtrunA17_Chr3g0077881 | 43.590 | 78 | 43 | 1 | 25 | 101 | 2 | 79 | 1.74e-11 | 58.5 |
| Msa1008580 | MtrunA17_Chr3g0077881 | 41.429 | 70 | 40 | 1 | 31 | 99 | 99 | 168 | 5.30e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1008580 | AT1G24190.3 | 47.222 | 108 | 50 | 2 | 19 | 121 | 4 | 109 | 4.66e-25 | 99.4 |
| Msa1008580 | AT1G24190.1 | 47.222 | 108 | 50 | 2 | 19 | 121 | 4 | 109 | 4.80e-25 | 99.4 |
| Msa1008580 | AT1G24190.2 | 47.222 | 108 | 50 | 2 | 19 | 121 | 4 | 109 | 5.08e-25 | 99.4 |
| Msa1008580 | AT1G70060.2 | 48.649 | 111 | 45 | 3 | 19 | 121 | 4 | 110 | 1.63e-24 | 97.8 |
| Msa1008580 | AT1G70060.1 | 48.649 | 111 | 45 | 3 | 19 | 121 | 4 | 110 | 1.63e-24 | 97.8 |
| Msa1008580 | AT5G15020.1 | 44.737 | 114 | 55 | 3 | 25 | 131 | 46 | 158 | 1.23e-22 | 92.4 |
| Msa1008580 | AT5G15020.2 | 44.737 | 114 | 55 | 3 | 25 | 131 | 46 | 158 | 1.25e-22 | 92.4 |
| Msa1008580 | AT3G01320.2 | 44.444 | 108 | 52 | 2 | 20 | 121 | 46 | 151 | 3.79e-22 | 91.3 |
| Msa1008580 | AT3G01320.1 | 44.444 | 108 | 52 | 2 | 20 | 121 | 46 | 151 | 3.98e-22 | 91.3 |
| Msa1008580 | AT1G59890.2 | 47.872 | 94 | 46 | 2 | 31 | 121 | 45 | 138 | 4.69e-22 | 90.9 |
| Msa1008580 | AT1G59890.4 | 47.872 | 94 | 46 | 2 | 31 | 121 | 45 | 138 | 4.77e-22 | 90.9 |
| Msa1008580 | AT1G59890.3 | 47.872 | 94 | 46 | 2 | 31 | 121 | 45 | 138 | 4.87e-22 | 90.9 |
| Msa1008580 | AT1G59890.1 | 47.872 | 94 | 46 | 2 | 31 | 121 | 45 | 138 | 5.01e-22 | 90.9 |
| Msa1008580 | AT5G15025.1 | 47.561 | 82 | 43 | 0 | 19 | 100 | 35 | 116 | 1.17e-21 | 84.0 |
| Msa1008580 | AT1G10450.3 | 43.617 | 94 | 50 | 2 | 31 | 121 | 84 | 177 | 1.00e-17 | 78.6 |
| Msa1008580 | AT1G10450.2 | 43.617 | 94 | 50 | 2 | 31 | 121 | 33 | 126 | 1.18e-17 | 78.2 |
| Msa1008580 | AT1G10450.1 | 43.617 | 94 | 50 | 2 | 31 | 121 | 33 | 126 | 1.18e-17 | 78.2 |
| Msa1008580 | AT1G70030.3 | 38.889 | 108 | 62 | 1 | 20 | 123 | 11 | 118 | 3.32e-17 | 72.4 |
| Msa1008580 | AT1G70030.2 | 38.532 | 109 | 63 | 1 | 20 | 124 | 11 | 119 | 1.03e-16 | 71.6 |
| Msa1008580 | AT1G70030.1 | 39.423 | 104 | 59 | 1 | 22 | 121 | 2 | 105 | 3.31e-16 | 70.9 |
| Msa1008580 | AT1G24200.1 | 35.238 | 105 | 65 | 2 | 19 | 121 | 3 | 106 | 2.51e-15 | 69.3 |
| Msa1008580 | AT4G12020.2 | 34.951 | 103 | 60 | 2 | 27 | 129 | 304 | 399 | 3.98e-15 | 71.2 |
| Msa1008580 | AT4G12020.4 | 34.951 | 103 | 60 | 2 | 27 | 129 | 304 | 399 | 4.06e-15 | 71.2 |
| Msa1008580 | AT4G12020.3 | 34.951 | 103 | 60 | 2 | 27 | 129 | 304 | 399 | 4.14e-15 | 71.2 |
| Msa1008580 | AT4G12020.10 | 34.951 | 103 | 60 | 2 | 27 | 129 | 304 | 399 | 4.22e-15 | 71.2 |
| Msa1008580 | AT4G12020.5 | 34.951 | 103 | 60 | 2 | 27 | 129 | 237 | 332 | 4.69e-15 | 70.9 |
| Msa1008580 | AT4G12020.7 | 34.951 | 103 | 60 | 2 | 27 | 129 | 304 | 399 | 5.26e-15 | 70.9 |
| Msa1008580 | AT4G12020.1 | 34.951 | 103 | 60 | 2 | 27 | 129 | 304 | 399 | 5.31e-15 | 70.9 |
| Msa1008580 | AT4G12020.9 | 34.951 | 103 | 60 | 2 | 27 | 129 | 304 | 399 | 5.31e-15 | 70.9 |
| Msa1008580 | AT4G12020.6 | 34.951 | 103 | 60 | 2 | 27 | 129 | 304 | 399 | 5.79e-15 | 70.9 |
| Msa1008580 | AT4G12020.8 | 34.951 | 103 | 60 | 2 | 27 | 129 | 304 | 399 | 5.79e-15 | 70.9 |
| Msa1008580 | AT4G12020.11 | 34.951 | 103 | 60 | 2 | 27 | 129 | 304 | 399 | 5.97e-15 | 70.5 |
| Msa1008580 | AT1G24250.1 | 44.595 | 74 | 41 | 0 | 19 | 92 | 108 | 181 | 6.88e-14 | 66.6 |
| Msa1008580 | AT5G15040.1 | 42.857 | 70 | 40 | 0 | 31 | 100 | 3 | 72 | 8.86e-14 | 62.8 |
| Msa1008580 | AT5G15040.3 | 42.857 | 70 | 40 | 0 | 31 | 100 | 3 | 72 | 8.86e-14 | 62.8 |
| Msa1008580 | AT5G15040.2 | 42.857 | 70 | 40 | 0 | 31 | 100 | 3 | 72 | 8.86e-14 | 62.8 |
| Msa1008580 | AT1G24230.1 | 36.709 | 79 | 50 | 0 | 23 | 101 | 78 | 156 | 1.78e-13 | 65.1 |
| Msa1008580 | AT1G24230.1 | 44.776 | 67 | 36 | 1 | 28 | 93 | 11 | 77 | 2.09e-12 | 62.4 |
| Msa1008580 | AT1G23810.1 | 41.892 | 74 | 43 | 0 | 19 | 92 | 97 | 170 | 4.12e-13 | 64.3 |
| Msa1008580 | AT1G27280.1 | 37.179 | 78 | 49 | 0 | 16 | 93 | 66 | 143 | 1.06e-12 | 62.8 |
| Msa1008580 | AT1G27220.1 | 33.333 | 81 | 54 | 0 | 19 | 99 | 2 | 82 | 4.19e-12 | 60.5 |
| Msa1008580 | AT1G27250.1 | 32.911 | 79 | 53 | 0 | 20 | 98 | 10 | 88 | 1.21e-11 | 58.5 |
| Msa1008580 | AT5G35610.1 | 35.714 | 112 | 56 | 1 | 26 | 121 | 5 | 116 | 2.02e-11 | 58.2 |
| Msa1008580 | AT1G27260.1 | 44.615 | 65 | 36 | 0 | 28 | 92 | 90 | 154 | 2.56e-11 | 58.9 |
Find 20 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATGATCCCCTTGTTCTC+TGG | 0.256537 | 7_1:+9048064 | None:intergenic |
| TTCAAATCCATCTGGCAAAA+AGG | 0.287960 | 7_1:+9047741 | None:intergenic |
| TATTCTTTAGTGATCACTTT+TGG | 0.343155 | 7_1:+9047697 | None:intergenic |
| TGATGATCCCCTTGTTCTCT+GGG | 0.393413 | 7_1:+9048065 | None:intergenic |
| TATTTCATTGAGATACATCT+TGG | 0.410337 | 7_1:+9048011 | None:intergenic |
| ATGTATTTGTAGAATTGATC+TGG | 0.430976 | 7_1:-9047830 | Msa1008580:intron |
| GATGTATCTCAATGAAATAA+AGG | 0.440944 | 7_1:-9048007 | Msa1008580:CDS |
| TAGAATTGATCTGGAGGGTG+TGG | 0.501765 | 7_1:-9047821 | Msa1008580:CDS |
| AGTGAGATTTCAAATCCATC+TGG | 0.524903 | 7_1:+9047733 | None:intergenic |
| TTTGGCACTCCCAGAGAACA+AGG | 0.540015 | 7_1:-9048074 | Msa1008580:CDS |
| GGGTGTGGTGGCAAGAGTGA+AGG | 0.566355 | 7_1:-9047806 | Msa1008580:CDS |
| GAAATATGTATGCAAGGTGA+AGG | 0.576664 | 7_1:-9047668 | Msa1008580:intron |
| TCATCTTCATTATTATGAGT+AGG | 0.586203 | 7_1:-9048251 | None:intergenic |
| TGAAAGATTTCGAGAAACGA+AGG | 0.586700 | 7_1:-9047936 | Msa1008580:intron |
| TGGCACTCCCAGAGAACAAG+GGG | 0.592323 | 7_1:-9048072 | Msa1008580:CDS |
| TGCTTTGAAATATGTATGCA+AGG | 0.609709 | 7_1:-9047674 | Msa1008580:CDS |
| AATTGATCTGGAGGGTGTGG+TGG | 0.629593 | 7_1:-9047818 | Msa1008580:CDS |
| TTGGCACTCCCAGAGAACAA+GGG | 0.646561 | 7_1:-9048073 | Msa1008580:CDS |
| TATTTGTAGAATTGATCTGG+AGG | 0.689246 | 7_1:-9047827 | Msa1008580:intron |
| ATTTGTAGAATTGATCTGGA+GGG | 0.693473 | 7_1:-9047826 | Msa1008580:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTATTTATTTATAAT+AGG | - | chr7_1:9047079-9047098 | Msa1008580:intron | 0.0% |
| !!! | ATTTTAATTTTAATTATAAT+TGG | - | chr7_1:9047950-9047969 | Msa1008580:CDS | 0.0% |
| !! | TTAATTTATTTATTTATAAT+AGG | - | chr7_1:9047079-9047098 | Msa1008580:intron | 0.0% |
| !!! | ATTTTAATTTTAATTATAAT+TGG | - | chr7_1:9047950-9047969 | Msa1008580:CDS | 0.0% |
| !!! | TTTAATTTGTAAATTGTAAT+TGG | - | chr7_1:9047112-9047131 | Msa1008580:intron | 10.0% |
| !!! | TAAAGTTAAAAATGAATTTT+TGG | - | chr7_1:9047592-9047611 | Msa1008580:intron | 10.0% |
| !!! | TTTAATTTGTAAATTGTAAT+TGG | - | chr7_1:9047112-9047131 | Msa1008580:intron | 10.0% |
| !!! | TAAAGTTAAAAATGAATTTT+TGG | - | chr7_1:9047592-9047611 | Msa1008580:intron | 10.0% |
| !!! | AATAATATCGATTTATCTTA+TGG | - | chr7_1:9046794-9046813 | Msa1008580:intron | 15.0% |
| !!! | AAAGCAAAATCATTTTTTTA+GGG | + | chr7_1:9047421-9047440 | None:intergenic | 15.0% |
| !!! | TAAAGCAAAATCATTTTTTT+AGG | + | chr7_1:9047422-9047441 | None:intergenic | 15.0% |
| !!! | CAAAACTTTTCTTTTAATTT+TGG | - | chr7_1:9047920-9047939 | Msa1008580:intron | 15.0% |
| !!! | AATAATATCGATTTATCTTA+TGG | - | chr7_1:9046794-9046813 | Msa1008580:intron | 15.0% |
| !!! | AAAGCAAAATCATTTTTTTA+GGG | + | chr7_1:9047421-9047440 | None:intergenic | 15.0% |
| !!! | TAAAGCAAAATCATTTTTTT+AGG | + | chr7_1:9047422-9047441 | None:intergenic | 15.0% |
| !!! | CAAAACTTTTCTTTTAATTT+TGG | - | chr7_1:9047920-9047939 | Msa1008580:intron | 15.0% |
| !!! | TTTTACATCGAAAATAAATC+TGG | + | chr7_1:9047379-9047398 | None:intergenic | 20.0% |
| !! | TAAAATGAAAAGTTAATCCA+AGG | + | chr7_1:9047574-9047593 | None:intergenic | 20.0% |
| !! | AAAAATTCTCTATAAAAGTG+TGG | - | chr7_1:9047658-9047677 | Msa1008580:intron | 20.0% |
| !!! | GTTTACTTTAATTTCTCTAA+TGG | - | chr7_1:9047738-9047757 | Msa1008580:CDS | 20.0% |
| !! | GTCACATAAGAAAATTAAAT+CGG | + | chr7_1:9048067-9048086 | None:intergenic | 20.0% |
| !!! | TTTTACATCGAAAATAAATC+TGG | + | chr7_1:9047379-9047398 | None:intergenic | 20.0% |
| !! | TAAAATGAAAAGTTAATCCA+AGG | + | chr7_1:9047574-9047593 | None:intergenic | 20.0% |
| !! | AAAAATTCTCTATAAAAGTG+TGG | - | chr7_1:9047658-9047677 | Msa1008580:intron | 20.0% |
| !!! | GTTTACTTTAATTTCTCTAA+TGG | - | chr7_1:9047738-9047757 | Msa1008580:CDS | 20.0% |
| !! | GTCACATAAGAAAATTAAAT+CGG | + | chr7_1:9048067-9048086 | None:intergenic | 20.0% |
| !!! | AGTAGGTTTTTTGTTTATAC+TGG | - | chr7_1:9046749-9046768 | Msa1008580:CDS | 25.0% |
| !!! | CTAACACTCTGAATATTTTT+TGG | - | chr7_1:9046891-9046910 | Msa1008580:intron | 25.0% |
| ! | TATTTCATTGAGATACATCT+TGG | + | chr7_1:9046975-9046994 | None:intergenic | 25.0% |
| ! | GATGTATCTCAATGAAATAA+AGG | - | chr7_1:9046976-9046995 | Msa1008580:intron | 25.0% |
| ! | ATGTATTTGTAGAATTGATC+TGG | - | chr7_1:9047153-9047172 | Msa1008580:intron | 25.0% |
| !! | TATTCTTTAGTGATCACTTT+TGG | + | chr7_1:9047289-9047308 | None:intergenic | 25.0% |
| !! | GGCACAAAATAATTTTTCTA+AGG | - | chr7_1:9047613-9047632 | Msa1008580:intron | 25.0% |
| ! | GCAAATTTAAAGAGAGAATA+CGG | - | chr7_1:9047635-9047654 | Msa1008580:intron | 25.0% |
| !! | AATTATAATTGGACTTTTGC+AGG | - | chr7_1:9047961-9047980 | Msa1008580:CDS | 25.0% |
| !!! | CAGGTTATTTCAATTTTTCA+AGG | - | chr7_1:9047980-9047999 | Msa1008580:CDS | 25.0% |
| !!! | TTTTAGTTTTATTTTCCAGC+AGG | - | chr7_1:9048205-9048224 | Msa1008580:intron | 25.0% |
| !!! | AGTAGGTTTTTTGTTTATAC+TGG | - | chr7_1:9046749-9046768 | Msa1008580:CDS | 25.0% |
| !!! | CTAACACTCTGAATATTTTT+TGG | - | chr7_1:9046891-9046910 | Msa1008580:intron | 25.0% |
| ! | TATTTCATTGAGATACATCT+TGG | + | chr7_1:9046975-9046994 | None:intergenic | 25.0% |
| ! | GATGTATCTCAATGAAATAA+AGG | - | chr7_1:9046976-9046995 | Msa1008580:intron | 25.0% |
| ! | ATGTATTTGTAGAATTGATC+TGG | - | chr7_1:9047153-9047172 | Msa1008580:intron | 25.0% |
| !! | TATTCTTTAGTGATCACTTT+TGG | + | chr7_1:9047289-9047308 | None:intergenic | 25.0% |
| !! | GGCACAAAATAATTTTTCTA+AGG | - | chr7_1:9047613-9047632 | Msa1008580:intron | 25.0% |
| ! | GCAAATTTAAAGAGAGAATA+CGG | - | chr7_1:9047635-9047654 | Msa1008580:intron | 25.0% |
| !! | AATTATAATTGGACTTTTGC+AGG | - | chr7_1:9047961-9047980 | Msa1008580:CDS | 25.0% |
| !!! | CAGGTTATTTCAATTTTTCA+AGG | - | chr7_1:9047980-9047999 | Msa1008580:CDS | 25.0% |
| !!! | TTTTAGTTTTATTTTCCAGC+AGG | - | chr7_1:9048205-9048224 | Msa1008580:intron | 25.0% |
| TTATACTGGTCATAAAGTCA+AGG | - | chr7_1:9046763-9046782 | Msa1008580:intron | 30.0% | |
| ATTTATCTTATGGTGTGTGT+TGG | - | chr7_1:9046804-9046823 | Msa1008580:intron | 30.0% | |
| TATTTGTAGAATTGATCTGG+AGG | - | chr7_1:9047156-9047175 | Msa1008580:intron | 30.0% | |
| ATTTGTAGAATTGATCTGGA+GGG | - | chr7_1:9047157-9047176 | Msa1008580:intron | 30.0% | |
| !!! | AGAGTGAAGGAATTTTTTCA+AGG | - | chr7_1:9047190-9047209 | Msa1008580:intron | 30.0% |
| !!! | GAGTGAAGGAATTTTTTCAA+GGG | - | chr7_1:9047191-9047210 | Msa1008580:intron | 30.0% |
| !! | TGCTTTGAAATATGTATGCA+AGG | - | chr7_1:9047309-9047328 | Msa1008580:intron | 30.0% |
| TGTATTGTAGACTTGTATGA+TGG | - | chr7_1:9047342-9047361 | Msa1008580:intron | 30.0% | |
| TCTTCTTTCTTCTTGTGATA+TGG | - | chr7_1:9047463-9047482 | Msa1008580:intron | 30.0% | |
| AAAACGATTCATAAAGCTGA+GGG | + | chr7_1:9047796-9047815 | None:intergenic | 30.0% | |
| AAAAACGATTCATAAAGCTG+AGG | + | chr7_1:9047797-9047816 | None:intergenic | 30.0% | |
| ATGATGAGTTATTCAGTACT+AGG | - | chr7_1:9048094-9048113 | Msa1008580:CDS | 30.0% | |
| TGATGAGTTATTCAGTACTA+GGG | - | chr7_1:9048095-9048114 | Msa1008580:CDS | 30.0% | |
| AAACTAAATAGATAACCTGC+TGG | + | chr7_1:9048223-9048242 | None:intergenic | 30.0% | |
| TTATACTGGTCATAAAGTCA+AGG | - | chr7_1:9046763-9046782 | Msa1008580:intron | 30.0% | |
| ATTTATCTTATGGTGTGTGT+TGG | - | chr7_1:9046804-9046823 | Msa1008580:intron | 30.0% | |
| TATTTGTAGAATTGATCTGG+AGG | - | chr7_1:9047156-9047175 | Msa1008580:intron | 30.0% | |
| ATTTGTAGAATTGATCTGGA+GGG | - | chr7_1:9047157-9047176 | Msa1008580:intron | 30.0% | |
| !!! | AGAGTGAAGGAATTTTTTCA+AGG | - | chr7_1:9047190-9047209 | Msa1008580:intron | 30.0% |
| !!! | GAGTGAAGGAATTTTTTCAA+GGG | - | chr7_1:9047191-9047210 | Msa1008580:intron | 30.0% |
| !! | TGCTTTGAAATATGTATGCA+AGG | - | chr7_1:9047309-9047328 | Msa1008580:intron | 30.0% |
| TGTATTGTAGACTTGTATGA+TGG | - | chr7_1:9047342-9047361 | Msa1008580:intron | 30.0% | |
| TCTTCTTTCTTCTTGTGATA+TGG | - | chr7_1:9047463-9047482 | Msa1008580:intron | 30.0% | |
| AAAACGATTCATAAAGCTGA+GGG | + | chr7_1:9047796-9047815 | None:intergenic | 30.0% | |
| AAAAACGATTCATAAAGCTG+AGG | + | chr7_1:9047797-9047816 | None:intergenic | 30.0% | |
| ATGATGAGTTATTCAGTACT+AGG | - | chr7_1:9048094-9048113 | Msa1008580:CDS | 30.0% | |
| TGATGAGTTATTCAGTACTA+GGG | - | chr7_1:9048095-9048114 | Msa1008580:CDS | 30.0% | |
| AAACTAAATAGATAACCTGC+TGG | + | chr7_1:9048223-9048242 | None:intergenic | 30.0% | |
| TGAAAGATTTCGAGAAACGA+AGG | - | chr7_1:9047047-9047066 | Msa1008580:intron | 35.0% | |
| ! | TTTCAAACCTTTTTGCCAGA+TGG | - | chr7_1:9047235-9047254 | Msa1008580:intron | 35.0% |
| TTCAAATCCATCTGGCAAAA+AGG | + | chr7_1:9047245-9047264 | None:intergenic | 35.0% | |
| AGTGAGATTTCAAATCCATC+TGG | + | chr7_1:9047253-9047272 | None:intergenic | 35.0% | |
| !!! | ATCACTTTTGGTTTCTTTGG+TGG | + | chr7_1:9047277-9047296 | None:intergenic | 35.0% |
| !!! | GTGATCACTTTTGGTTTCTT+TGG | + | chr7_1:9047280-9047299 | None:intergenic | 35.0% |
| GAAATATGTATGCAAGGTGA+AGG | - | chr7_1:9047315-9047334 | Msa1008580:intron | 35.0% | |
| ! | GCTTTTACACTTAAGTTCCT+TGG | - | chr7_1:9047554-9047573 | Msa1008580:intron | 35.0% |
| !! | AAACGACCATAAGAGTGTTA+AGG | - | chr7_1:9047838-9047857 | Msa1008580:intron | 35.0% |
| TAAGCAAAACACATACCGTT+TGG | + | chr7_1:9047871-9047890 | None:intergenic | 35.0% | |
| TAAACTCATCAACAAGATCC+TGG | + | chr7_1:9048009-9048028 | None:intergenic | 35.0% | |
| AGTTATTCAGTACTAGGGTT+TGG | - | chr7_1:9048100-9048119 | Msa1008580:CDS | 35.0% | |
| TGAAAGATTTCGAGAAACGA+AGG | - | chr7_1:9047047-9047066 | Msa1008580:intron | 35.0% | |
| ! | TTTCAAACCTTTTTGCCAGA+TGG | - | chr7_1:9047235-9047254 | Msa1008580:intron | 35.0% |
| TTCAAATCCATCTGGCAAAA+AGG | + | chr7_1:9047245-9047264 | None:intergenic | 35.0% | |
| AGTGAGATTTCAAATCCATC+TGG | + | chr7_1:9047253-9047272 | None:intergenic | 35.0% | |
| !!! | ATCACTTTTGGTTTCTTTGG+TGG | + | chr7_1:9047277-9047296 | None:intergenic | 35.0% |
| !!! | GTGATCACTTTTGGTTTCTT+TGG | + | chr7_1:9047280-9047299 | None:intergenic | 35.0% |
| GAAATATGTATGCAAGGTGA+AGG | - | chr7_1:9047315-9047334 | Msa1008580:intron | 35.0% | |
| ! | GCTTTTACACTTAAGTTCCT+TGG | - | chr7_1:9047554-9047573 | Msa1008580:intron | 35.0% |
| !! | AAACGACCATAAGAGTGTTA+AGG | - | chr7_1:9047838-9047857 | Msa1008580:intron | 35.0% |
| TAAGCAAAACACATACCGTT+TGG | + | chr7_1:9047871-9047890 | None:intergenic | 35.0% | |
| TAAACTCATCAACAAGATCC+TGG | + | chr7_1:9048009-9048028 | None:intergenic | 35.0% | |
| AGTTATTCAGTACTAGGGTT+TGG | - | chr7_1:9048100-9048119 | Msa1008580:CDS | 35.0% | |
| !!! | TTCAATTTTTCAAGGCCACC+AGG | - | chr7_1:9047988-9048007 | Msa1008580:CDS | 40.0% |
| TAGATCACGAGCTGCATTAT+GGG | + | chr7_1:9048042-9048061 | None:intergenic | 40.0% | |
| ATAGATCACGAGCTGCATTA+TGG | + | chr7_1:9048043-9048062 | None:intergenic | 40.0% | |
| !!! | TTCAATTTTTCAAGGCCACC+AGG | - | chr7_1:9047988-9048007 | Msa1008580:CDS | 40.0% |
| TAGATCACGAGCTGCATTAT+GGG | + | chr7_1:9048042-9048061 | None:intergenic | 40.0% | |
| ATAGATCACGAGCTGCATTA+TGG | + | chr7_1:9048043-9048062 | None:intergenic | 40.0% | |
| TGATGATCCCCTTGTTCTCT+GGG | + | chr7_1:9046921-9046940 | None:intergenic | 45.0% | |
| TAGAATTGATCTGGAGGGTG+TGG | - | chr7_1:9047162-9047181 | Msa1008580:intron | 45.0% | |
| GAAATCGAGTCTGCATGCAA+AGG | + | chr7_1:9047766-9047785 | None:intergenic | 45.0% | |
| GGAGCTCCTTAACACTCTTA+TGG | + | chr7_1:9047847-9047866 | None:intergenic | 45.0% | |
| TGTTAAGGAGCTCCACCAAA+CGG | - | chr7_1:9047853-9047872 | Msa1008580:intron | 45.0% | |
| GCAAAACACATACCGTTTGG+TGG | + | chr7_1:9047868-9047887 | None:intergenic | 45.0% | |
| ACTCATCAACAAGATCCTGG+TGG | + | chr7_1:9048006-9048025 | None:intergenic | 45.0% | |
| TGATGATCCCCTTGTTCTCT+GGG | + | chr7_1:9046921-9046940 | None:intergenic | 45.0% | |
| TAGAATTGATCTGGAGGGTG+TGG | - | chr7_1:9047162-9047181 | Msa1008580:intron | 45.0% | |
| GAAATCGAGTCTGCATGCAA+AGG | + | chr7_1:9047766-9047785 | None:intergenic | 45.0% | |
| GGAGCTCCTTAACACTCTTA+TGG | + | chr7_1:9047847-9047866 | None:intergenic | 45.0% | |
| TGTTAAGGAGCTCCACCAAA+CGG | - | chr7_1:9047853-9047872 | Msa1008580:intron | 45.0% | |
| GCAAAACACATACCGTTTGG+TGG | + | chr7_1:9047868-9047887 | None:intergenic | 45.0% | |
| ACTCATCAACAAGATCCTGG+TGG | + | chr7_1:9048006-9048025 | None:intergenic | 45.0% | |
| TTTGGCACTCCCAGAGAACA+AGG | - | chr7_1:9046909-9046928 | Msa1008580:intron | 50.0% | |
| TTGGCACTCCCAGAGAACAA+GGG | - | chr7_1:9046910-9046929 | Msa1008580:intron | 50.0% | |
| CTGATGATCCCCTTGTTCTC+TGG | + | chr7_1:9046922-9046941 | None:intergenic | 50.0% | |
| ! | AATTGATCTGGAGGGTGTGG+TGG | - | chr7_1:9047165-9047184 | Msa1008580:intron | 50.0% |
| TTTGGCACTCCCAGAGAACA+AGG | - | chr7_1:9046909-9046928 | Msa1008580:intron | 50.0% | |
| TTGGCACTCCCAGAGAACAA+GGG | - | chr7_1:9046910-9046929 | Msa1008580:intron | 50.0% | |
| CTGATGATCCCCTTGTTCTC+TGG | + | chr7_1:9046922-9046941 | None:intergenic | 50.0% | |
| ! | AATTGATCTGGAGGGTGTGG+TGG | - | chr7_1:9047165-9047184 | Msa1008580:intron | 50.0% |
| TGGCACTCCCAGAGAACAAG+GGG | - | chr7_1:9046911-9046930 | Msa1008580:intron | 55.0% | |
| TGGCACTCCCAGAGAACAAG+GGG | - | chr7_1:9046911-9046930 | Msa1008580:intron | 55.0% | |
| GGGTGTGGTGGCAAGAGTGA+AGG | - | chr7_1:9047177-9047196 | Msa1008580:intron | 60.0% | |
| GGGTGTGGTGGCAAGAGTGA+AGG | - | chr7_1:9047177-9047196 | Msa1008580:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 9046746 | 9048259 | 9046746 | ID=Msa1008580;Name=Msa1008580 |
| chr7_1 | mRNA | 9046746 | 9048259 | 9046746 | ID=Msa1008580-mRNA-1;Parent=Msa1008580;Name=Msa1008580-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|0.5|1|1|4|0|132 |
| chr7_1 | exon | 9048252 | 9048259 | 9048252 | ID=Msa1008580-mRNA-1:exon:2599;Parent=Msa1008580-mRNA-1 |
| chr7_1 | exon | 9047937 | 9048119 | 9047937 | ID=Msa1008580-mRNA-1:exon:2598;Parent=Msa1008580-mRNA-1 |
| chr7_1 | exon | 9047669 | 9047840 | 9047669 | ID=Msa1008580-mRNA-1:exon:2597;Parent=Msa1008580-mRNA-1 |
| chr7_1 | exon | 9046746 | 9046781 | 9046746 | ID=Msa1008580-mRNA-1:exon:2596;Parent=Msa1008580-mRNA-1 |
| chr7_1 | CDS | 9048252 | 9048259 | 9048252 | ID=Msa1008580-mRNA-1:cds;Parent=Msa1008580-mRNA-1 |
| chr7_1 | CDS | 9047937 | 9048119 | 9047937 | ID=Msa1008580-mRNA-1:cds;Parent=Msa1008580-mRNA-1 |
| chr7_1 | CDS | 9047669 | 9047840 | 9047669 | ID=Msa1008580-mRNA-1:cds;Parent=Msa1008580-mRNA-1 |
| chr7_1 | CDS | 9046746 | 9046781 | 9046746 | ID=Msa1008580-mRNA-1:cds;Parent=Msa1008580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
