Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009320 | XP_013447650.1 | 88.542 | 96 | 10 | 1 | 1 | 95 | 1 | 96 | 5.07e-49 | 176 |
| Msa1009320 | XP_013447650.1 | 90.000 | 170 | 17 | 0 | 102 | 271 | 182 | 351 | 7.55e-105 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009320 | sp|Q3E8W4|ANX2_ARATH | 33.929 | 168 | 90 | 6 | 101 | 266 | 657 | 805 | 8.47e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009320 | A0A072TX13 | 88.542 | 96 | 10 | 1 | 1 | 95 | 1 | 96 | 2.42e-49 | 176 |
| Msa1009320 | A0A072TX13 | 90.000 | 170 | 17 | 0 | 102 | 271 | 182 | 351 | 3.61e-105 | 319 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009320 | MtrunA17_Chr7g0219831 | 90.000 | 170 | 17 | 0 | 102 | 271 | 182 | 351 | 6.95e-109 | 319 |
| Msa1009320 | MtrunA17_Chr7g0219831 | 88.542 | 96 | 10 | 1 | 1 | 95 | 1 | 96 | 4.67e-53 | 176 |
| Msa1009320 | MtrunA17_Chr7g0219841 | 64.000 | 175 | 39 | 1 | 102 | 276 | 178 | 328 | 1.17e-68 | 216 |
| Msa1009320 | MtrunA17_Chr7g0219841 | 63.095 | 84 | 31 | 0 | 4 | 87 | 1 | 84 | 1.51e-29 | 114 |
| Msa1009320 | MtrunA17_Chr7g0220711 | 66.071 | 168 | 50 | 2 | 102 | 269 | 178 | 338 | 9.56e-67 | 211 |
| Msa1009320 | MtrunA17_Chr7g0220711 | 65.476 | 84 | 29 | 0 | 4 | 87 | 1 | 84 | 4.67e-31 | 118 |
| Msa1009320 | MtrunA17_Chr7g0219871 | 49.744 | 195 | 60 | 7 | 104 | 274 | 182 | 362 | 3.52e-42 | 148 |
| Msa1009320 | MtrunA17_Chr7g0219871 | 64.865 | 74 | 26 | 0 | 4 | 77 | 1 | 74 | 3.47e-27 | 108 |
| Msa1009320 | MtrunA17_Chr7g0219861 | 78.431 | 51 | 9 | 2 | 226 | 275 | 127 | 176 | 2.16e-17 | 77.8 |
| Msa1009320 | MtrunA17_Chr7g0245131 | 34.545 | 165 | 87 | 6 | 101 | 263 | 672 | 817 | 2.50e-17 | 82.0 |
| Msa1009320 | MtrunA17_Chr7g0274261 | 26.524 | 328 | 161 | 12 | 7 | 263 | 492 | 810 | 1.07e-15 | 77.0 |
| Msa1009320 | MtrunA17_Chr1g0202711 | 35.976 | 164 | 78 | 7 | 102 | 260 | 641 | 782 | 1.08e-14 | 73.9 |
| Msa1009320 | MtrunA17_Chr8g0352381 | 35.156 | 128 | 72 | 3 | 141 | 266 | 696 | 814 | 4.74e-13 | 69.3 |
| Msa1009320 | MtrunA17_Chr7g0248881 | 30.769 | 130 | 82 | 2 | 124 | 253 | 505 | 626 | 2.55e-12 | 67.0 |
| Msa1009320 | MtrunA17_Chr5g0420181 | 33.083 | 133 | 79 | 3 | 141 | 270 | 666 | 791 | 3.45e-12 | 66.6 |
| Msa1009320 | MtrunA17_Chr5g0420161 | 33.083 | 133 | 79 | 3 | 141 | 270 | 442 | 567 | 3.47e-12 | 66.2 |
| Msa1009320 | MtrunA17_Chr4g0053571 | 35.252 | 139 | 79 | 4 | 141 | 277 | 664 | 793 | 5.03e-12 | 65.9 |
| Msa1009320 | MtrunA17_Chr4g0053521 | 35.484 | 124 | 69 | 3 | 141 | 262 | 1226 | 1340 | 6.15e-12 | 65.9 |
| Msa1009320 | MtrunA17_Chr4g0053591 | 32.847 | 137 | 85 | 1 | 141 | 277 | 315 | 444 | 9.59e-12 | 65.1 |
| Msa1009320 | MtrunA17_Chr4g0053561 | 33.813 | 139 | 81 | 3 | 141 | 277 | 607 | 736 | 1.27e-11 | 64.7 |
| Msa1009320 | MtrunA17_Chr2g0318301 | 30.303 | 165 | 96 | 4 | 101 | 264 | 638 | 784 | 1.33e-11 | 64.7 |
| Msa1009320 | MtrunA17_Chr1g0190581 | 30.909 | 165 | 93 | 6 | 101 | 263 | 660 | 805 | 2.70e-11 | 63.9 |
| Msa1009320 | MtrunA17_Chr6g0455321 | 34.400 | 125 | 71 | 2 | 141 | 263 | 703 | 818 | 9.74e-11 | 62.0 |
| Msa1009320 | MtrunA17_Chr7g0219681 | 32.738 | 168 | 94 | 6 | 101 | 266 | 660 | 810 | 9.97e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009320 | AT5G28680.1 | 33.929 | 168 | 90 | 6 | 101 | 266 | 657 | 805 | 8.61e-17 | 80.9 |
| Msa1009320 | AT5G28680.2 | 33.929 | 168 | 90 | 6 | 101 | 266 | 657 | 805 | 8.61e-17 | 80.9 |
| Msa1009320 | AT3G04690.1 | 34.545 | 165 | 87 | 6 | 101 | 263 | 653 | 798 | 3.03e-16 | 79.0 |
| Msa1009320 | AT5G24010.1 | 34.545 | 165 | 85 | 6 | 101 | 262 | 625 | 769 | 4.71e-14 | 72.4 |
| Msa1009320 | AT3G51550.1 | 32.121 | 165 | 91 | 5 | 101 | 263 | 673 | 818 | 1.90e-13 | 70.9 |
| Msa1009320 | AT2G23200.1 | 31.013 | 158 | 91 | 3 | 102 | 259 | 626 | 765 | 2.24e-12 | 67.4 |
| Msa1009320 | AT4G39110.1 | 35.659 | 129 | 72 | 4 | 141 | 267 | 691 | 810 | 2.81e-12 | 67.4 |
| Msa1009320 | AT2G21480.1 | 34.091 | 132 | 76 | 4 | 141 | 270 | 690 | 812 | 7.95e-12 | 65.9 |
| Msa1009320 | AT3G46290.1 | 31.953 | 169 | 92 | 6 | 101 | 266 | 621 | 769 | 1.41e-11 | 65.1 |
| Msa1009320 | AT1G30570.1 | 31.250 | 176 | 97 | 6 | 101 | 273 | 656 | 810 | 3.50e-11 | 63.9 |
Find 54 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGTTTCATCAAAGTTAT+TGG | 0.238221 | 7_1:+10686260 | None:intergenic |
| ATCTAATCCAGCTAACATTT+TGG | 0.240668 | 7_1:-10685328 | Msa1009320:CDS |
| GATGAACTCCACAATATTAT+TGG | 0.262371 | 7_1:-10685906 | Msa1009320:intron |
| TTTGATAAGATGGTCAAGTT+AGG | 0.329967 | 7_1:-10685378 | Msa1009320:CDS |
| TTACCATGGTGCTTGGAAAA+AGG | 0.346723 | 7_1:+10685098 | None:intergenic |
| TGACACTTAGATTGGGAGAT+TGG | 0.349300 | 7_1:-10686149 | Msa1009320:CDS |
| CCTATCGTCGGCCTTTCATT+TGG | 0.354301 | 7_1:+10685198 | None:intergenic |
| GATCTTCAAGAGAAAATTGA+TGG | 0.357443 | 7_1:+10686295 | None:intergenic |
| ATTGATAGCGCCGCAATGTT+TGG | 0.361539 | 7_1:-10685262 | Msa1009320:CDS |
| GTGTCGAGTTTAATCATTGT+TGG | 0.384696 | 7_1:+10685930 | None:intergenic |
| GGAGAGGATGACACTTAGAT+TGG | 0.386000 | 7_1:-10686157 | Msa1009320:CDS |
| AAATGTTGGACATTGCTTCC+TGG | 0.386163 | 7_1:+10686332 | None:intergenic |
| AAATGTGATGTCTATTCCTT+TGG | 0.386619 | 7_1:-10685447 | Msa1009320:CDS |
| GCAATGTTTGGAAGTGTTCA+TGG | 0.398019 | 7_1:-10685250 | Msa1009320:CDS |
| CGCTATCAATCTCATGAGAA+TGG | 0.418530 | 7_1:+10685275 | None:intergenic |
| CATAGTTCTTTAATAAATGT+TGG | 0.425725 | 7_1:+10686318 | None:intergenic |
| GTTCTAAAACTCGCGCAACT+TGG | 0.437652 | 7_1:-10685987 | Msa1009320:CDS |
| TGAGCATGCTCTGGCACTGC+AGG | 0.438038 | 7_1:-10685157 | Msa1009320:CDS |
| AAATACTATCTTTGATAAGA+TGG | 0.443976 | 7_1:-10685388 | Msa1009320:CDS |
| TCAAGTTAGGGAACACAGAT+TGG | 0.450398 | 7_1:-10685365 | Msa1009320:CDS |
| GTCATCCTCTCCAATGCTAC+TGG | 0.455728 | 7_1:+10686168 | None:intergenic |
| AAAGGTTATCTAAAACATAA+TGG | 0.469888 | 7_1:-10686204 | Msa1009320:CDS |
| TTGACAGGTTCGACTGGCCA+TGG | 0.471347 | 7_1:-10685513 | Msa1009320:intron |
| TTGATAAGATGGTCAAGTTA+GGG | 0.477431 | 7_1:-10685377 | Msa1009320:CDS |
| AACCTCTCCAAAATGTTAGC+TGG | 0.478553 | 7_1:+10685321 | None:intergenic |
| TATTTGTGAAAGCATTGGTT+CGG | 0.481438 | 7_1:+10685469 | None:intergenic |
| ACATTTATTTGTGAAAGCAT+TGG | 0.486826 | 7_1:+10685464 | None:intergenic |
| GAGAGGATGACACTTAGATT+GGG | 0.506962 | 7_1:-10686156 | Msa1009320:CDS |
| GGTTGAACTTGAGCATGCTC+TGG | 0.512369 | 7_1:-10685166 | Msa1009320:CDS |
| TGGCAGCTTACCATGGTGCT+TGG | 0.513023 | 7_1:+10685091 | None:intergenic |
| TGATGTCTATTCCTTTGGTA+CGG | 0.514268 | 7_1:-10685442 | Msa1009320:CDS |
| GCTATCAATCTCATGAGAAT+GGG | 0.528960 | 7_1:+10685276 | None:intergenic |
| TTTAGAACGCTTCTCTTGCA+AGG | 0.533693 | 7_1:+10685959 | None:intergenic |
| TTCGACTGGCCATGGATACA+TGG | 0.535162 | 7_1:-10685505 | Msa1009320:CDS |
| GTGTATGAGTACATGTTCAA+TGG | 0.541523 | 7_1:-10686030 | Msa1009320:CDS |
| GCCGACGATAGGTGAGGTTG+AGG | 0.546327 | 7_1:-10685187 | Msa1009320:CDS |
| ATAAATTACCAATAATATTG+TGG | 0.549794 | 7_1:+10685898 | None:intergenic |
| CTGCAGGAGGAAGCAGATTG+TGG | 0.554239 | 7_1:-10685141 | Msa1009320:CDS |
| GCATTGGTTCGGACACACTC+TGG | 0.554480 | 7_1:+10685480 | None:intergenic |
| AAATGAGTATCCAGTAGCAT+TGG | 0.557214 | 7_1:-10686178 | Msa1009320:CDS |
| GGGAGATTGGATGTTCAAGA+AGG | 0.557493 | 7_1:-10686136 | Msa1009320:intron |
| ACTCTGGCGCCATGTATCCA+TGG | 0.572611 | 7_1:+10685496 | None:intergenic |
| TGAATATAGAACCAAATGAA+AGG | 0.579421 | 7_1:-10685209 | Msa1009320:CDS |
| CCAAATGAAAGGCCGACGAT+AGG | 0.582094 | 7_1:-10685198 | Msa1009320:CDS |
| GCATGCTCTGGCACTGCAGG+AGG | 0.586226 | 7_1:-10685154 | Msa1009320:CDS |
| TTCAAGTAGAACCGTACCAA+AGG | 0.586745 | 7_1:+10685431 | None:intergenic |
| CAAACCATAAAAGTTCATCC+AGG | 0.595640 | 7_1:-10686350 | Msa1009320:CDS |
| ACGGTTCTACTTGAAGTAGC+AGG | 0.599069 | 7_1:-10685423 | Msa1009320:CDS |
| GCCAGAATGGCAGCTTACCA+TGG | 0.613533 | 7_1:+10685084 | None:intergenic |
| ACCTCAACCTCACCTATCGT+CGG | 0.631236 | 7_1:+10685186 | None:intergenic |
| AGTATCCAGTAGCATTGGAG+AGG | 0.652193 | 7_1:-10686173 | Msa1009320:CDS |
| ATGAACACTTCCAAACATTG+CGG | 0.671973 | 7_1:+10685252 | None:intergenic |
| TGAAAGGCCGACGATAGGTG+AGG | 0.679048 | 7_1:-10685193 | Msa1009320:CDS |
| CTATACAGTATAGTGTACAA+AGG | 0.692107 | 7_1:-10686222 | Msa1009320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATTATTATTTTTTTA+AGG | - | chr7_1:10685691-10685710 | Msa1009320:intron | 0.0% |
| !!! | TTTATATTATTATTTTTTTA+AGG | - | chr7_1:10685691-10685710 | Msa1009320:intron | 0.0% |
| !!! | TTATTTTCTTTTATTTTTAG+AGG | - | chr7_1:10685594-10685613 | Msa1009320:intron | 10.0% |
| !! | AAATTATTGAATAACTAAAA+TGG | - | chr7_1:10685883-10685902 | Msa1009320:intron | 10.0% |
| !!! | TTATTTTCTTTTATTTTTAG+AGG | - | chr7_1:10685594-10685613 | Msa1009320:intron | 10.0% |
| !! | AAATTATTGAATAACTAAAA+TGG | - | chr7_1:10685883-10685902 | Msa1009320:intron | 10.0% |
| !! | ATAAATTACCAATAATATTG+TGG | + | chr7_1:10685578-10685597 | None:intergenic | 15.0% |
| !!! | TTTTAAGAAGTAGAAAATAT+GGG | + | chr7_1:10685815-10685834 | None:intergenic | 15.0% |
| !! | ATAAATTACCAATAATATTG+TGG | + | chr7_1:10685578-10685597 | None:intergenic | 15.0% |
| !!! | TTTTAAGAAGTAGAAAATAT+GGG | + | chr7_1:10685815-10685834 | None:intergenic | 15.0% |
| !! | CATAGTTCTTTAATAAATGT+TGG | + | chr7_1:10685158-10685177 | None:intergenic | 20.0% |
| !!! | AAAGGTTATCTAAAACATAA+TGG | - | chr7_1:10685269-10685288 | Msa1009320:CDS | 20.0% |
| !! | CTATTAAAGATGTCAAATTT+GGG | + | chr7_1:10685391-10685410 | None:intergenic | 20.0% |
| !! | TCAAATTCTACATCAAAAAA+AGG | + | chr7_1:10685723-10685742 | None:intergenic | 20.0% |
| !!! | CTTTTAAGAAGTAGAAAATA+TGG | + | chr7_1:10685816-10685835 | None:intergenic | 20.0% |
| !! | AAATACTATCTTTGATAAGA+TGG | - | chr7_1:10686085-10686104 | Msa1009320:intron | 20.0% |
| !! | CATAGTTCTTTAATAAATGT+TGG | + | chr7_1:10685158-10685177 | None:intergenic | 20.0% |
| !!! | AAAGGTTATCTAAAACATAA+TGG | - | chr7_1:10685269-10685288 | Msa1009320:CDS | 20.0% |
| !! | CTATTAAAGATGTCAAATTT+GGG | + | chr7_1:10685391-10685410 | None:intergenic | 20.0% |
| !! | TCAAATTCTACATCAAAAAA+AGG | + | chr7_1:10685723-10685742 | None:intergenic | 20.0% |
| !!! | CTTTTAAGAAGTAGAAAATA+TGG | + | chr7_1:10685816-10685835 | None:intergenic | 20.0% |
| !! | AAATACTATCTTTGATAAGA+TGG | - | chr7_1:10686085-10686104 | Msa1009320:intron | 20.0% |
| !! | TTATGGTTTGAGTATTTTAC+AGG | + | chr7_1:10685113-10685132 | None:intergenic | 25.0% |
| ! | TTGAGTTTCATCAAAGTTAT+TGG | + | chr7_1:10685216-10685235 | None:intergenic | 25.0% |
| ! | TTTGATGAAACTCAAAAACT+TGG | - | chr7_1:10685221-10685240 | Msa1009320:CDS | 25.0% |
| ! | CCTATTAAAGATGTCAAATT+TGG | + | chr7_1:10685392-10685411 | None:intergenic | 25.0% |
| ! | CCAAATTTGACATCTTTAAT+AGG | - | chr7_1:10685389-10685408 | Msa1009320:CDS | 25.0% |
| ! | TTTCTTAATATACCTTCTCT+TGG | - | chr7_1:10685746-10685765 | Msa1009320:intron | 25.0% |
| !! | ACATTTATTTGTGAAAGCAT+TGG | + | chr7_1:10686012-10686031 | None:intergenic | 25.0% |
| ! | TGAATATAGAACCAAATGAA+AGG | - | chr7_1:10686264-10686283 | Msa1009320:CDS | 25.0% |
| !! | TTATGGTTTGAGTATTTTAC+AGG | + | chr7_1:10685113-10685132 | None:intergenic | 25.0% |
| ! | TTGAGTTTCATCAAAGTTAT+TGG | + | chr7_1:10685216-10685235 | None:intergenic | 25.0% |
| ! | TTTGATGAAACTCAAAAACT+TGG | - | chr7_1:10685221-10685240 | Msa1009320:CDS | 25.0% |
| ! | CCTATTAAAGATGTCAAATT+TGG | + | chr7_1:10685392-10685411 | None:intergenic | 25.0% |
| ! | CCAAATTTGACATCTTTAAT+AGG | - | chr7_1:10685389-10685408 | Msa1009320:CDS | 25.0% |
| ! | TTTCTTAATATACCTTCTCT+TGG | - | chr7_1:10685746-10685765 | Msa1009320:intron | 25.0% |
| !! | ACATTTATTTGTGAAAGCAT+TGG | + | chr7_1:10686012-10686031 | None:intergenic | 25.0% |
| ! | TGAATATAGAACCAAATGAA+AGG | - | chr7_1:10686264-10686283 | Msa1009320:CDS | 25.0% |
| GATCTTCAAGAGAAAATTGA+TGG | + | chr7_1:10685181-10685200 | None:intergenic | 30.0% | |
| CTATACAGTATAGTGTACAA+AGG | - | chr7_1:10685251-10685270 | Msa1009320:CDS | 30.0% | |
| GATGAACTCCACAATATTAT+TGG | - | chr7_1:10685567-10685586 | Msa1009320:intron | 30.0% | |
| TGAAATTAGGTAAGGAATTC+TGG | - | chr7_1:10685623-10685642 | Msa1009320:intron | 30.0% | |
| GTAGAAAATATGGGCATTTA+GGG | + | chr7_1:10685806-10685825 | None:intergenic | 30.0% | |
| AGTAGAAAATATGGGCATTT+AGG | + | chr7_1:10685807-10685826 | None:intergenic | 30.0% | |
| !! | TATTTGTGAAAGCATTGGTT+CGG | + | chr7_1:10686007-10686026 | None:intergenic | 30.0% |
| AAATGTGATGTCTATTCCTT+TGG | - | chr7_1:10686026-10686045 | Msa1009320:CDS | 30.0% | |
| TTTGATAAGATGGTCAAGTT+AGG | - | chr7_1:10686095-10686114 | Msa1009320:intron | 30.0% | |
| TTGATAAGATGGTCAAGTTA+GGG | - | chr7_1:10686096-10686115 | Msa1009320:intron | 30.0% | |
| ! | ATCTAATCCAGCTAACATTT+TGG | - | chr7_1:10686145-10686164 | Msa1009320:CDS | 30.0% |
| GATCAAAAATTTCATCAGCT+GGG | + | chr7_1:10686178-10686197 | None:intergenic | 30.0% | |
| GATCTTCAAGAGAAAATTGA+TGG | + | chr7_1:10685181-10685200 | None:intergenic | 30.0% | |
| CTATACAGTATAGTGTACAA+AGG | - | chr7_1:10685251-10685270 | Msa1009320:CDS | 30.0% | |
| GATGAACTCCACAATATTAT+TGG | - | chr7_1:10685567-10685586 | Msa1009320:intron | 30.0% | |
| TGAAATTAGGTAAGGAATTC+TGG | - | chr7_1:10685623-10685642 | Msa1009320:intron | 30.0% | |
| GTAGAAAATATGGGCATTTA+GGG | + | chr7_1:10685806-10685825 | None:intergenic | 30.0% | |
| AGTAGAAAATATGGGCATTT+AGG | + | chr7_1:10685807-10685826 | None:intergenic | 30.0% | |
| !! | TATTTGTGAAAGCATTGGTT+CGG | + | chr7_1:10686007-10686026 | None:intergenic | 30.0% |
| AAATGTGATGTCTATTCCTT+TGG | - | chr7_1:10686026-10686045 | Msa1009320:CDS | 30.0% | |
| TTTGATAAGATGGTCAAGTT+AGG | - | chr7_1:10686095-10686114 | Msa1009320:intron | 30.0% | |
| TTGATAAGATGGTCAAGTTA+GGG | - | chr7_1:10686096-10686115 | Msa1009320:intron | 30.0% | |
| ! | ATCTAATCCAGCTAACATTT+TGG | - | chr7_1:10686145-10686164 | Msa1009320:CDS | 30.0% |
| GATCAAAAATTTCATCAGCT+GGG | + | chr7_1:10686178-10686197 | None:intergenic | 30.0% | |
| CAAACCATAAAAGTTCATCC+AGG | - | chr7_1:10685123-10685142 | Msa1009320:CDS | 35.0% | |
| AAATGAGTATCCAGTAGCAT+TGG | - | chr7_1:10685295-10685314 | Msa1009320:CDS | 35.0% | |
| TCAAATTTGGGTGATGAAGT+TGG | + | chr7_1:10685379-10685398 | None:intergenic | 35.0% | |
| GTGTATGAGTACATGTTCAA+TGG | - | chr7_1:10685443-10685462 | Msa1009320:CDS | 35.0% | |
| GTGTCGAGTTTAATCATTGT+TGG | + | chr7_1:10685546-10685565 | None:intergenic | 35.0% | |
| !! | TTAGAGGAAGCACTGAAATT+AGG | - | chr7_1:10685610-10685629 | Msa1009320:intron | 35.0% |
| ! | CACAAAATGCTTTTGTTGAC+AGG | - | chr7_1:10685945-10685964 | Msa1009320:CDS | 35.0% |
| TGATGTCTATTCCTTTGGTA+CGG | - | chr7_1:10686031-10686050 | Msa1009320:CDS | 35.0% | |
| GGATCAAAAATTTCATCAGC+TGG | + | chr7_1:10686179-10686198 | None:intergenic | 35.0% | |
| GCTATCAATCTCATGAGAAT+GGG | + | chr7_1:10686200-10686219 | None:intergenic | 35.0% | |
| ATGAACACTTCCAAACATTG+CGG | + | chr7_1:10686224-10686243 | None:intergenic | 35.0% | |
| GCAGATTGTGGAAAAAGTAA+TGG | - | chr7_1:10686344-10686363 | Msa1009320:CDS | 35.0% | |
| CAAACCATAAAAGTTCATCC+AGG | - | chr7_1:10685123-10685142 | Msa1009320:CDS | 35.0% | |
| AAATGAGTATCCAGTAGCAT+TGG | - | chr7_1:10685295-10685314 | Msa1009320:CDS | 35.0% | |
| TCAAATTTGGGTGATGAAGT+TGG | + | chr7_1:10685379-10685398 | None:intergenic | 35.0% | |
| GTGTATGAGTACATGTTCAA+TGG | - | chr7_1:10685443-10685462 | Msa1009320:CDS | 35.0% | |
| GTGTCGAGTTTAATCATTGT+TGG | + | chr7_1:10685546-10685565 | None:intergenic | 35.0% | |
| !! | TTAGAGGAAGCACTGAAATT+AGG | - | chr7_1:10685610-10685629 | Msa1009320:intron | 35.0% |
| ! | CACAAAATGCTTTTGTTGAC+AGG | - | chr7_1:10685945-10685964 | Msa1009320:CDS | 35.0% |
| TGATGTCTATTCCTTTGGTA+CGG | - | chr7_1:10686031-10686050 | Msa1009320:CDS | 35.0% | |
| GGATCAAAAATTTCATCAGC+TGG | + | chr7_1:10686179-10686198 | None:intergenic | 35.0% | |
| GCTATCAATCTCATGAGAAT+GGG | + | chr7_1:10686200-10686219 | None:intergenic | 35.0% | |
| ATGAACACTTCCAAACATTG+CGG | + | chr7_1:10686224-10686243 | None:intergenic | 35.0% | |
| GCAGATTGTGGAAAAAGTAA+TGG | - | chr7_1:10686344-10686363 | Msa1009320:CDS | 35.0% | |
| ! | GCTTCCTGGATGAACTTTTA+TGG | + | chr7_1:10685130-10685149 | None:intergenic | 40.0% |
| AAATGTTGGACATTGCTTCC+TGG | + | chr7_1:10685144-10685163 | None:intergenic | 40.0% | |
| GAGAGGATGACACTTAGATT+GGG | - | chr7_1:10685317-10685336 | Msa1009320:CDS | 40.0% | |
| TGACACTTAGATTGGGAGAT+TGG | - | chr7_1:10685324-10685343 | Msa1009320:CDS | 40.0% | |
| ! | TTTAGAACGCTTCTCTTGCA+AGG | + | chr7_1:10685517-10685536 | None:intergenic | 40.0% |
| !! | GGAAGCACTGAAATTAGGTA+AGG | - | chr7_1:10685615-10685634 | Msa1009320:intron | 40.0% |
| ! | GTTTTCATTGCACCAAGAGA+AGG | + | chr7_1:10685761-10685780 | None:intergenic | 40.0% |
| TTCAAGTAGAACCGTACCAA+AGG | + | chr7_1:10686045-10686064 | None:intergenic | 40.0% | |
| TCAAGTTAGGGAACACAGAT+TGG | - | chr7_1:10686108-10686127 | Msa1009320:intron | 40.0% | |
| !! | ATCCAGCTAACATTTTGGAG+AGG | - | chr7_1:10686150-10686169 | Msa1009320:CDS | 40.0% |
| AACCTCTCCAAAATGTTAGC+TGG | + | chr7_1:10686155-10686174 | None:intergenic | 40.0% | |
| CGCTATCAATCTCATGAGAA+TGG | + | chr7_1:10686201-10686220 | None:intergenic | 40.0% | |
| !! | GCAATGTTTGGAAGTGTTCA+TGG | - | chr7_1:10686223-10686242 | Msa1009320:CDS | 40.0% |
| ! | TTACCTTTTTCCAAGCACCA+TGG | - | chr7_1:10686372-10686391 | Msa1009320:CDS | 40.0% |
| TTACCATGGTGCTTGGAAAA+AGG | + | chr7_1:10686378-10686397 | None:intergenic | 40.0% | |
| ! | GCTTCCTGGATGAACTTTTA+TGG | + | chr7_1:10685130-10685149 | None:intergenic | 40.0% |
| AAATGTTGGACATTGCTTCC+TGG | + | chr7_1:10685144-10685163 | None:intergenic | 40.0% | |
| GAGAGGATGACACTTAGATT+GGG | - | chr7_1:10685317-10685336 | Msa1009320:CDS | 40.0% | |
| TGACACTTAGATTGGGAGAT+TGG | - | chr7_1:10685324-10685343 | Msa1009320:CDS | 40.0% | |
| ! | TTTAGAACGCTTCTCTTGCA+AGG | + | chr7_1:10685517-10685536 | None:intergenic | 40.0% |
| !! | GGAAGCACTGAAATTAGGTA+AGG | - | chr7_1:10685615-10685634 | Msa1009320:intron | 40.0% |
| ! | GTTTTCATTGCACCAAGAGA+AGG | + | chr7_1:10685761-10685780 | None:intergenic | 40.0% |
| TTCAAGTAGAACCGTACCAA+AGG | + | chr7_1:10686045-10686064 | None:intergenic | 40.0% | |
| TCAAGTTAGGGAACACAGAT+TGG | - | chr7_1:10686108-10686127 | Msa1009320:intron | 40.0% | |
| !! | ATCCAGCTAACATTTTGGAG+AGG | - | chr7_1:10686150-10686169 | Msa1009320:CDS | 40.0% |
| AACCTCTCCAAAATGTTAGC+TGG | + | chr7_1:10686155-10686174 | None:intergenic | 40.0% | |
| CGCTATCAATCTCATGAGAA+TGG | + | chr7_1:10686201-10686220 | None:intergenic | 40.0% | |
| !! | GCAATGTTTGGAAGTGTTCA+TGG | - | chr7_1:10686223-10686242 | Msa1009320:CDS | 40.0% |
| ! | TTACCTTTTTCCAAGCACCA+TGG | - | chr7_1:10686372-10686391 | Msa1009320:CDS | 40.0% |
| TTACCATGGTGCTTGGAAAA+AGG | + | chr7_1:10686378-10686397 | None:intergenic | 40.0% | |
| ! | AGTATCCAGTAGCATTGGAG+AGG | - | chr7_1:10685300-10685319 | Msa1009320:CDS | 45.0% |
| GGAGAGGATGACACTTAGAT+TGG | - | chr7_1:10685316-10685335 | Msa1009320:CDS | 45.0% | |
| GGGAGATTGGATGTTCAAGA+AGG | - | chr7_1:10685337-10685356 | Msa1009320:CDS | 45.0% | |
| ! | TTGGGTGATGAAGTTGGCTT+TGG | + | chr7_1:10685373-10685392 | None:intergenic | 45.0% |
| !! | GTTCTAAAACTCGCGCAACT+TGG | - | chr7_1:10685486-10685505 | Msa1009320:CDS | 45.0% |
| CTGTTGCGTGCATCATTAGT+AGG | - | chr7_1:10685652-10685671 | Msa1009320:intron | 45.0% | |
| ! | CTTTTGTTGACAGGTTCGAC+TGG | - | chr7_1:10685954-10685973 | Msa1009320:CDS | 45.0% |
| ACGGTTCTACTTGAAGTAGC+AGG | - | chr7_1:10686050-10686069 | Msa1009320:intron | 45.0% | |
| !! | ATTGATAGCGCCGCAATGTT+TGG | - | chr7_1:10686211-10686230 | Msa1009320:CDS | 45.0% |
| ! | AGTATCCAGTAGCATTGGAG+AGG | - | chr7_1:10685300-10685319 | Msa1009320:CDS | 45.0% |
| GGAGAGGATGACACTTAGAT+TGG | - | chr7_1:10685316-10685335 | Msa1009320:CDS | 45.0% | |
| GGGAGATTGGATGTTCAAGA+AGG | - | chr7_1:10685337-10685356 | Msa1009320:CDS | 45.0% | |
| ! | TTGGGTGATGAAGTTGGCTT+TGG | + | chr7_1:10685373-10685392 | None:intergenic | 45.0% |
| !! | GTTCTAAAACTCGCGCAACT+TGG | - | chr7_1:10685486-10685505 | Msa1009320:CDS | 45.0% |
| CTGTTGCGTGCATCATTAGT+AGG | - | chr7_1:10685652-10685671 | Msa1009320:intron | 45.0% | |
| ! | CTTTTGTTGACAGGTTCGAC+TGG | - | chr7_1:10685954-10685973 | Msa1009320:CDS | 45.0% |
| ACGGTTCTACTTGAAGTAGC+AGG | - | chr7_1:10686050-10686069 | Msa1009320:intron | 45.0% | |
| !! | ATTGATAGCGCCGCAATGTT+TGG | - | chr7_1:10686211-10686230 | Msa1009320:CDS | 45.0% |
| GTCATCCTCTCCAATGCTAC+TGG | + | chr7_1:10685308-10685327 | None:intergenic | 50.0% | |
| ! | TTCGACTGGCCATGGATACA+TGG | - | chr7_1:10685968-10685987 | Msa1009320:CDS | 50.0% |
| CCTATCGTCGGCCTTTCATT+TGG | + | chr7_1:10686278-10686297 | None:intergenic | 50.0% | |
| CCAAATGAAAGGCCGACGAT+AGG | - | chr7_1:10686275-10686294 | Msa1009320:CDS | 50.0% | |
| ACCTCAACCTCACCTATCGT+CGG | + | chr7_1:10686290-10686309 | None:intergenic | 50.0% | |
| GGTTGAACTTGAGCATGCTC+TGG | - | chr7_1:10686307-10686326 | Msa1009320:CDS | 50.0% | |
| GTCATCCTCTCCAATGCTAC+TGG | + | chr7_1:10685308-10685327 | None:intergenic | 50.0% | |
| ! | TTCGACTGGCCATGGATACA+TGG | - | chr7_1:10685968-10685987 | Msa1009320:CDS | 50.0% |
| CCTATCGTCGGCCTTTCATT+TGG | + | chr7_1:10686278-10686297 | None:intergenic | 50.0% | |
| CCAAATGAAAGGCCGACGAT+AGG | - | chr7_1:10686275-10686294 | Msa1009320:CDS | 50.0% | |
| ACCTCAACCTCACCTATCGT+CGG | + | chr7_1:10686290-10686309 | None:intergenic | 50.0% | |
| GGTTGAACTTGAGCATGCTC+TGG | - | chr7_1:10686307-10686326 | Msa1009320:CDS | 50.0% | |
| ! | TTGACAGGTTCGACTGGCCA+TGG | - | chr7_1:10685960-10685979 | Msa1009320:CDS | 55.0% |
| ACTCTGGCGCCATGTATCCA+TGG | + | chr7_1:10685980-10685999 | None:intergenic | 55.0% | |
| !! | GCATTGGTTCGGACACACTC+TGG | + | chr7_1:10685996-10686015 | None:intergenic | 55.0% |
| TGAAAGGCCGACGATAGGTG+AGG | - | chr7_1:10686280-10686299 | Msa1009320:CDS | 55.0% | |
| CTGCAGGAGGAAGCAGATTG+TGG | - | chr7_1:10686332-10686351 | Msa1009320:CDS | 55.0% | |
| ! | TTGACAGGTTCGACTGGCCA+TGG | - | chr7_1:10685960-10685979 | Msa1009320:CDS | 55.0% |
| ACTCTGGCGCCATGTATCCA+TGG | + | chr7_1:10685980-10685999 | None:intergenic | 55.0% | |
| !! | GCATTGGTTCGGACACACTC+TGG | + | chr7_1:10685996-10686015 | None:intergenic | 55.0% |
| TGAAAGGCCGACGATAGGTG+AGG | - | chr7_1:10686280-10686299 | Msa1009320:CDS | 55.0% | |
| CTGCAGGAGGAAGCAGATTG+TGG | - | chr7_1:10686332-10686351 | Msa1009320:CDS | 55.0% | |
| GCCGACGATAGGTGAGGTTG+AGG | - | chr7_1:10686286-10686305 | Msa1009320:CDS | 60.0% | |
| TGAGCATGCTCTGGCACTGC+AGG | - | chr7_1:10686316-10686335 | Msa1009320:CDS | 60.0% | |
| GCCGACGATAGGTGAGGTTG+AGG | - | chr7_1:10686286-10686305 | Msa1009320:CDS | 60.0% | |
| TGAGCATGCTCTGGCACTGC+AGG | - | chr7_1:10686316-10686335 | Msa1009320:CDS | 60.0% | |
| GCATGCTCTGGCACTGCAGG+AGG | - | chr7_1:10686319-10686338 | Msa1009320:CDS | 65.0% | |
| GCATGCTCTGGCACTGCAGG+AGG | - | chr7_1:10686319-10686338 | Msa1009320:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 10685098 | 10686397 | 10685098 | ID=Msa1009320;Name=Msa1009320 |
| chr7_1 | mRNA | 10685098 | 10686397 | 10685098 | ID=Msa1009320-mRNA-1;Parent=Msa1009320;Name=Msa1009320-mRNA-1;_AED=0.35;_eAED=0.38;_QI=0|0|0|1|1|1|3|0|278 |
| chr7_1 | exon | 10686137 | 10686397 | 10686137 | ID=Msa1009320-mRNA-1:exon:2891;Parent=Msa1009320-mRNA-1 |
| chr7_1 | exon | 10685907 | 10686051 | 10685907 | ID=Msa1009320-mRNA-1:exon:2890;Parent=Msa1009320-mRNA-1 |
| chr7_1 | exon | 10685098 | 10685528 | 10685098 | ID=Msa1009320-mRNA-1:exon:2889;Parent=Msa1009320-mRNA-1 |
| chr7_1 | CDS | 10686137 | 10686397 | 10686137 | ID=Msa1009320-mRNA-1:cds;Parent=Msa1009320-mRNA-1 |
| chr7_1 | CDS | 10685907 | 10686051 | 10685907 | ID=Msa1009320-mRNA-1:cds;Parent=Msa1009320-mRNA-1 |
| chr7_1 | CDS | 10685098 | 10685528 | 10685098 | ID=Msa1009320-mRNA-1:cds;Parent=Msa1009320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
