AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1009490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009490 MtrunA17_Chr5g0405951 63.256 215 37 6 1 173 23 237 1.24e-69 211
Msa1009490 MtrunA17_Chr7g0254991 34.872 195 86 8 4 168 116 299 5.23e-15 71.2
Msa1009490 MtrunA17_Chr3g0133971 62.500 56 16 1 109 164 352 402 1.22e-13 67.8
Msa1009490 MtrunA17_Chr4g0044771 62.069 58 17 1 109 166 301 353 2.88e-13 66.6
Msa1009490 MtrunA17_Chr3g0080341 65.385 52 13 1 109 160 251 297 2.01e-12 63.9
Msa1009490 MtrunA17_Chr2g0321411 35.976 164 80 6 7 166 117 259 3.17e-12 63.2
Msa1009490 MtrunA17_Chr8g0355121 40.777 103 48 4 66 160 191 288 1.12e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009490 AT4G35900.1 56.250 80 30 1 94 173 200 274 4.49e-19 82.4
Msa1009490 AT2G17770.2 52.941 85 35 1 89 173 105 184 6.98e-18 77.4
Msa1009490 AT3G56850.1 51.807 83 34 2 79 160 195 272 1.22e-13 67.4
Msa1009490 AT1G45249.1 60.345 58 18 1 109 166 337 389 4.28e-13 66.6
Msa1009490 AT2G41070.4 65.000 60 12 2 109 168 200 250 4.67e-13 65.9
Msa1009490 AT2G41070.3 65.000 60 12 2 109 168 191 241 4.95e-13 65.5
Msa1009490 AT2G41070.1 65.000 60 12 2 109 168 191 241 4.95e-13 65.5
Msa1009490 AT2G41070.2 65.000 60 12 2 109 168 191 241 4.95e-13 65.5
Msa1009490 AT1G45249.7 60.345 58 18 1 109 166 352 404 5.60e-13 66.2
Msa1009490 AT1G45249.6 60.345 58 18 1 109 166 352 404 5.60e-13 66.2
Msa1009490 AT2G41070.5 73.469 49 8 1 109 157 191 234 1.78e-12 63.9
Msa1009490 AT1G45249.3 54.688 64 23 1 109 166 337 400 2.22e-12 64.7
Msa1009490 AT4G34000.1 58.621 58 19 1 109 166 373 425 3.12e-12 64.3
Msa1009490 AT4G34000.4 58.621 58 19 1 109 166 373 425 3.12e-12 64.3
Msa1009490 AT4G34000.2 58.621 58 19 1 109 166 373 425 3.12e-12 64.3
Msa1009490 AT3G19290.4 41.935 93 48 2 74 166 318 404 6.51e-12 63.2
Msa1009490 AT2G36270.3 62.963 54 15 1 109 162 356 404 6.61e-12 63.2
Msa1009490 AT3G19290.1 41.935 93 48 2 74 166 318 404 7.47e-12 63.2
Msa1009490 AT3G19290.5 41.935 93 48 2 74 166 318 404 7.47e-12 63.2
Msa1009490 AT3G19290.3 41.935 93 48 2 74 166 318 404 7.48e-12 63.2
Msa1009490 AT2G36270.1 62.963 54 15 1 109 162 356 404 8.22e-12 62.8
Msa1009490 AT2G36270.2 62.963 54 15 1 109 162 356 404 8.22e-12 62.8
Msa1009490 AT1G49720.2 59.259 54 17 1 109 162 312 360 2.72e-11 61.2
Msa1009490 AT4G34000.3 62.745 51 14 1 109 159 373 418 3.07e-11 61.2
Msa1009490 AT1G49720.1 59.259 54 17 1 109 162 312 360 3.35e-11 61.2
Msa1009490 AT1G49720.3 59.259 54 17 1 109 162 312 360 3.35e-11 61.2

Find 27 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCTCGCAGAAACCCTTAT+TGG 0.225110 7_1:+10960618 None:intergenic
AAAACATTTCTGCACCAATA+AGG 0.253039 7_1:-10960632 Msa1009490:CDS
AGAAGAATAATCGATGCTTT+TGG 0.258209 7_1:+10960767 None:intergenic
TCTAATTCTTTCATTTCTTT+TGG 0.267657 7_1:-10960555 Msa1009490:CDS
AGTACTCGTAATTGTACTTT+TGG 0.310858 7_1:-10960840 Msa1009490:CDS
AAACATTTCTGCACCAATAA+GGG 0.372649 7_1:-10960631 Msa1009490:CDS
CATTGAACTAGGGCAATAAA+AGG 0.373167 7_1:+10960695 None:intergenic
TTATTGGTGCAGAAATGTTT+TGG 0.409602 7_1:+10960634 None:intergenic
ATAAGAGGATGATCAAGAAT+CGG 0.446318 7_1:-10960485 Msa1009490:CDS
AGAGCAGCAAGTTCAACTAT+TGG 0.448847 7_1:-10959731 Msa1009490:CDS
TTTGGGTGGGTCTGAAGTGA+GGG 0.456936 7_1:+10960785 None:intergenic
CTTGAGTGTGAAAGTCTTGA+AGG 0.469462 7_1:+10960808 None:intergenic
GATGGTGGGGTCATTGAACT+AGG 0.476787 7_1:+10960684 None:intergenic
TAAGAGGATGATCAAGAATC+GGG 0.505249 7_1:-10960484 Msa1009490:CDS
TCTTATTTCTCCTTTCACTA+CGG 0.532558 7_1:+10960502 None:intergenic
GCGTTCACGAGCTAGAAAAC+AGG 0.535637 7_1:-10960451 Msa1009490:CDS
TGAAAATCAGTGACAAGAGA+TGG 0.550991 7_1:+10960666 None:intergenic
ATCAGTGACAAGAGATGGTG+GGG 0.566918 7_1:+10960671 None:intergenic
CTGATATTAGCCGTAGTGAA+AGG 0.586903 7_1:-10960512 Msa1009490:CDS
AATCAGTGACAAGAGATGGT+GGG 0.594382 7_1:+10960670 None:intergenic
GCAGCAAGTTCAACTATTGG+AGG 0.594793 7_1:-10959728 Msa1009490:CDS
AAATCAGTGACAAGAGATGG+TGG 0.615325 7_1:+10960669 None:intergenic
ACTTAGAAGACAGCAACAAG+AGG 0.615687 7_1:-10959692 Msa1009490:intron
ATGGTGGGGTCATTGAACTA+GGG 0.621945 7_1:+10960685 None:intergenic
TCACCGTATGATCAGAATGT+GGG 0.625766 7_1:-10960588 Msa1009490:intron
GTAGTGAAAGGAGAAATAAG+AGG 0.627501 7_1:-10960500 Msa1009490:CDS
TTACGGGAAGCAGAAAGCGT+TGG 0.638395 7_1:-10958619 Msa1009490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTATAATGTTATTAAAAAA+TGG + chr7_1:10959214-10959233 None:intergenic 10.0%
!! TATTTAGAAATATATTAAAC+GGG + chr7_1:10959495-10959514 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGAAAGAA+AGG - chr7_1:10959578-10959597 Msa1009490:intron 10.0%
!! AATATTAATTAGAGTTATAA+AGG - chr7_1:10960365-10960384 Msa1009490:intron 10.0%
!!! AATTTAGGTTTTTTTTTTTT+TGG - chr7_1:10960786-10960805 Msa1009490:CDS 10.0%
!!! ATTTAGGTTTTTTTTTTTTT+GGG - chr7_1:10960787-10960806 Msa1009490:CDS 10.0%
!! GTTATAATGTTATTAAAAAA+TGG + chr7_1:10959214-10959233 None:intergenic 10.0%
!! TATTTAGAAATATATTAAAC+GGG + chr7_1:10959495-10959514 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGAAAGAA+AGG - chr7_1:10959578-10959597 Msa1009490:intron 10.0%
!! AATATTAATTAGAGTTATAA+AGG - chr7_1:10960365-10960384 Msa1009490:intron 10.0%
!!! AATTTAGGTTTTTTTTTTTT+TGG - chr7_1:10960786-10960805 Msa1009490:CDS 10.0%
!!! ATTTAGGTTTTTTTTTTTTT+GGG - chr7_1:10960787-10960806 Msa1009490:CDS 10.0%
!! ATTTAGAAATATATTAAACG+GGG + chr7_1:10959494-10959513 None:intergenic 15.0%
!!! AATTTAAAGTTTGTATATTG+TGG - chr7_1:10959534-10959553 Msa1009490:intron 15.0%
!!! TATGTATTTGGTATAAATTT+TGG - chr7_1:10959842-10959861 Msa1009490:intron 15.0%
!! TTCAAAAAAAAATTATGATG+TGG - chr7_1:10959985-10960004 Msa1009490:intron 15.0%
!!! ATGAACAATAACTTTTTTTT+TGG + chr7_1:10960084-10960103 None:intergenic 15.0%
!!! ATGAACAATAACTTTTTTTT+TGG + chr7_1:10960084-10960103 None:intergenic 15.0%
!! TATTGTATTAGAAAATGAAA+TGG - chr7_1:10960402-10960421 Msa1009490:intron 15.0%
!! GAAAAAAAATGTGATATATT+TGG + chr7_1:10960676-10960695 None:intergenic 15.0%
!! ATTTAGAAATATATTAAACG+GGG + chr7_1:10959494-10959513 None:intergenic 15.0%
!!! AATTTAAAGTTTGTATATTG+TGG - chr7_1:10959534-10959553 Msa1009490:intron 15.0%
!!! TATGTATTTGGTATAAATTT+TGG - chr7_1:10959842-10959861 Msa1009490:intron 15.0%
!! TTCAAAAAAAAATTATGATG+TGG - chr7_1:10959985-10960004 Msa1009490:intron 15.0%
!!! ATGAACAATAACTTTTTTTT+TGG + chr7_1:10960084-10960103 None:intergenic 15.0%
!!! ATGAACAATAACTTTTTTTT+TGG + chr7_1:10960084-10960103 None:intergenic 15.0%
!! TATTGTATTAGAAAATGAAA+TGG - chr7_1:10960402-10960421 Msa1009490:intron 15.0%
!! GAAAAAAAATGTGATATATT+TGG + chr7_1:10960676-10960695 None:intergenic 15.0%
!!! TCTAATTCTTTCATTTCTTT+TGG - chr7_1:10958891-10958910 Msa1009490:intron 20.0%
!! AATATAACACAGTATTTGTA+GGG + chr7_1:10959168-10959187 None:intergenic 20.0%
!! TAATATAACACAGTATTTGT+AGG + chr7_1:10959169-10959188 None:intergenic 20.0%
!! ATGATTTAATTGAATACATG+CGG + chr7_1:10959302-10959321 None:intergenic 20.0%
!! TGTGAATTAATCTAGAAAAT+TGG - chr7_1:10959351-10959370 Msa1009490:intron 20.0%
!! TATCATAGAATGATTTGATA+GGG - chr7_1:10959374-10959393 Msa1009490:intron 20.0%
!! TTTAGAAATATATTAAACGG+GGG + chr7_1:10959493-10959512 None:intergenic 20.0%
!! CAAATTAAAGAGAATGAAAT+GGG + chr7_1:10959791-10959810 None:intergenic 20.0%
!! ACAAATTAAAGAGAATGAAA+TGG + chr7_1:10959792-10959811 None:intergenic 20.0%
!!! GGTGAAATTTTTTATGTATT+TGG - chr7_1:10959830-10959849 Msa1009490:intron 20.0%
!! AACATAAAATATTTACGATG+TGG - chr7_1:10959961-10959980 Msa1009490:intron 20.0%
!! TAAGACAAATGTATAAACAA+AGG - chr7_1:10960243-10960262 Msa1009490:intron 20.0%
!! CAAATTAAAGACAATGAAAT+GGG + chr7_1:10960614-10960633 None:intergenic 20.0%
!! ACAAATTAAAGACAATGAAA+TGG + chr7_1:10960615-10960634 None:intergenic 20.0%
!!! TCTAATTCTTTCATTTCTTT+TGG - chr7_1:10958891-10958910 Msa1009490:intron 20.0%
!! AATATAACACAGTATTTGTA+GGG + chr7_1:10959168-10959187 None:intergenic 20.0%
!! TAATATAACACAGTATTTGT+AGG + chr7_1:10959169-10959188 None:intergenic 20.0%
!! ATGATTTAATTGAATACATG+CGG + chr7_1:10959302-10959321 None:intergenic 20.0%
!! TGTGAATTAATCTAGAAAAT+TGG - chr7_1:10959351-10959370 Msa1009490:intron 20.0%
!! TATCATAGAATGATTTGATA+GGG - chr7_1:10959374-10959393 Msa1009490:intron 20.0%
!! TTTAGAAATATATTAAACGG+GGG + chr7_1:10959493-10959512 None:intergenic 20.0%
!! CAAATTAAAGAGAATGAAAT+GGG + chr7_1:10959791-10959810 None:intergenic 20.0%
!! ACAAATTAAAGAGAATGAAA+TGG + chr7_1:10959792-10959811 None:intergenic 20.0%
!!! GGTGAAATTTTTTATGTATT+TGG - chr7_1:10959830-10959849 Msa1009490:intron 20.0%
!! AACATAAAATATTTACGATG+TGG - chr7_1:10959961-10959980 Msa1009490:intron 20.0%
!! TAAGACAAATGTATAAACAA+AGG - chr7_1:10960243-10960262 Msa1009490:intron 20.0%
!! CAAATTAAAGACAATGAAAT+GGG + chr7_1:10960614-10960633 None:intergenic 20.0%
!! ACAAATTAAAGACAATGAAA+TGG + chr7_1:10960615-10960634 None:intergenic 20.0%
! TGTTTGAAAAGAGATTCTTA+GGG + chr7_1:10959037-10959056 None:intergenic 25.0%
! ATATAACACAGTATTTGTAG+GGG + chr7_1:10959167-10959186 None:intergenic 25.0%
! TCAAATAGACATTTGTAGAA+AGG - chr7_1:10959323-10959342 Msa1009490:intron 25.0%
! GTATCATAGAATGATTTGAT+AGG - chr7_1:10959373-10959392 Msa1009490:intron 25.0%
!!! GATTCATTTACTTTTTTGTG+TGG - chr7_1:10959666-10959685 Msa1009490:intron 25.0%
!! TGTTCTTTTCAGTCAAAAAA+TGG - chr7_1:10959809-10959828 Msa1009490:intron 25.0%
! TAAATACAATAATCGCGAAA+CGG + chr7_1:10960122-10960141 None:intergenic 25.0%
! ATAATTCGGTTAATTCGAAA+CGG + chr7_1:10960204-10960223 None:intergenic 25.0%
! TGTGAAATGAGCAAATAATT+CGG + chr7_1:10960218-10960237 None:intergenic 25.0%
! TAACTGTTCTTGTTAAGTAT+TGG - chr7_1:10960283-10960302 Msa1009490:intron 25.0%
! GAAATATAATGAATTGAGAG+TGG - chr7_1:10960335-10960354 Msa1009490:intron 25.0%
!! ATTGATTCATTTACTTAGTG+TGG - chr7_1:10960489-10960508 Msa1009490:CDS 25.0%
! TGTTTGAAAAGAGATTCTTA+GGG + chr7_1:10959037-10959056 None:intergenic 25.0%
! ATATAACACAGTATTTGTAG+GGG + chr7_1:10959167-10959186 None:intergenic 25.0%
! TCAAATAGACATTTGTAGAA+AGG - chr7_1:10959323-10959342 Msa1009490:intron 25.0%
! GTATCATAGAATGATTTGAT+AGG - chr7_1:10959373-10959392 Msa1009490:intron 25.0%
!!! GATTCATTTACTTTTTTGTG+TGG - chr7_1:10959666-10959685 Msa1009490:intron 25.0%
!! TGTTCTTTTCAGTCAAAAAA+TGG - chr7_1:10959809-10959828 Msa1009490:intron 25.0%
! TAAATACAATAATCGCGAAA+CGG + chr7_1:10960122-10960141 None:intergenic 25.0%
! ATAATTCGGTTAATTCGAAA+CGG + chr7_1:10960204-10960223 None:intergenic 25.0%
! TGTGAAATGAGCAAATAATT+CGG + chr7_1:10960218-10960237 None:intergenic 25.0%
! TAACTGTTCTTGTTAAGTAT+TGG - chr7_1:10960283-10960302 Msa1009490:intron 25.0%
! GAAATATAATGAATTGAGAG+TGG - chr7_1:10960335-10960354 Msa1009490:intron 25.0%
!! ATTGATTCATTTACTTAGTG+TGG - chr7_1:10960489-10960508 Msa1009490:CDS 25.0%
! AGTACTCGTAATTGTACTTT+TGG - chr7_1:10958606-10958625 Msa1009490:CDS 30.0%
! GAAGAATAATCGATGCTTTT+GGG + chr7_1:10958681-10958700 None:intergenic 30.0%
! AGAAGAATAATCGATGCTTT+TGG + chr7_1:10958682-10958701 None:intergenic 30.0%
! TTATTGGTGCAGAAATGTTT+TGG + chr7_1:10958815-10958834 None:intergenic 30.0%
AAAACATTTCTGCACCAATA+AGG - chr7_1:10958814-10958833 Msa1009490:intron 30.0%
AAACATTTCTGCACCAATAA+GGG - chr7_1:10958815-10958834 Msa1009490:intron 30.0%
! TCTTATTTCTCCTTTCACTA+CGG + chr7_1:10958947-10958966 None:intergenic 30.0%
ATAAGAGGATGATCAAGAAT+CGG - chr7_1:10958961-10958980 Msa1009490:intron 30.0%
GTGTTTGAAAAGAGATTCTT+AGG + chr7_1:10959038-10959057 None:intergenic 30.0%
AGTTTGTATATTGTGGTGAA+AGG - chr7_1:10959541-10959560 Msa1009490:intron 30.0%
GGAGTATGCTTATAACATAA+AGG - chr7_1:10959599-10959618 Msa1009490:intron 30.0%
GTATGCTTATAACATAAAGG+TGG - chr7_1:10959602-10959621 Msa1009490:intron 30.0%
!!! CTTTTTTGTGTGGTTATTTC+AGG - chr7_1:10959676-10959695 Msa1009490:intron 30.0%
ACCAAGCATAATATAATGTG+TGG + chr7_1:10959924-10959943 None:intergenic 30.0%
TCACTTTGCATTTATGTTAG+TGG + chr7_1:10960317-10960336 None:intergenic 30.0%
! TTACTTAGTGTGGTTATTTC+AGG - chr7_1:10960499-10960518 Msa1009490:CDS 30.0%
GTACTAGTAGGATTGAATTT+AGG - chr7_1:10960771-10960790 Msa1009490:CDS 30.0%
! AGTACTCGTAATTGTACTTT+TGG - chr7_1:10958606-10958625 Msa1009490:CDS 30.0%
! GAAGAATAATCGATGCTTTT+GGG + chr7_1:10958681-10958700 None:intergenic 30.0%
! AGAAGAATAATCGATGCTTT+TGG + chr7_1:10958682-10958701 None:intergenic 30.0%
! TTATTGGTGCAGAAATGTTT+TGG + chr7_1:10958815-10958834 None:intergenic 30.0%
AAAACATTTCTGCACCAATA+AGG - chr7_1:10958814-10958833 Msa1009490:intron 30.0%
AAACATTTCTGCACCAATAA+GGG - chr7_1:10958815-10958834 Msa1009490:intron 30.0%
! TCTTATTTCTCCTTTCACTA+CGG + chr7_1:10958947-10958966 None:intergenic 30.0%
ATAAGAGGATGATCAAGAAT+CGG - chr7_1:10958961-10958980 Msa1009490:intron 30.0%
GTGTTTGAAAAGAGATTCTT+AGG + chr7_1:10959038-10959057 None:intergenic 30.0%
AGTTTGTATATTGTGGTGAA+AGG - chr7_1:10959541-10959560 Msa1009490:intron 30.0%
GGAGTATGCTTATAACATAA+AGG - chr7_1:10959599-10959618 Msa1009490:intron 30.0%
GTATGCTTATAACATAAAGG+TGG - chr7_1:10959602-10959621 Msa1009490:intron 30.0%
!!! CTTTTTTGTGTGGTTATTTC+AGG - chr7_1:10959676-10959695 Msa1009490:intron 30.0%
ACCAAGCATAATATAATGTG+TGG + chr7_1:10959924-10959943 None:intergenic 30.0%
TCACTTTGCATTTATGTTAG+TGG + chr7_1:10960317-10960336 None:intergenic 30.0%
! TTACTTAGTGTGGTTATTTC+AGG - chr7_1:10960499-10960518 Msa1009490:CDS 30.0%
GTACTAGTAGGATTGAATTT+AGG - chr7_1:10960771-10960790 Msa1009490:CDS 30.0%
! ACTCGTAATTGTACTTTTGG+TGG - chr7_1:10958609-10958628 Msa1009490:CDS 35.0%
!! AATAATCGATGCTTTTGGGT+GGG + chr7_1:10958677-10958696 None:intergenic 35.0%
!! ATTTTGATCTGAAGCAACGA+AGG + chr7_1:10958718-10958737 None:intergenic 35.0%
CATTGAACTAGGGCAATAAA+AGG + chr7_1:10958754-10958773 None:intergenic 35.0%
TGAAAATCAGTGACAAGAGA+TGG + chr7_1:10958783-10958802 None:intergenic 35.0%
GTAGTGAAAGGAGAAATAAG+AGG - chr7_1:10958946-10958965 Msa1009490:intron 35.0%
TAAGAGGATGATCAAGAATC+GGG - chr7_1:10958962-10958981 Msa1009490:intron 35.0%
TTGTATATTGTGGTGAAAGG+TGG - chr7_1:10959544-10959563 Msa1009490:intron 35.0%
GCCACACATTATATTATGCT+TGG - chr7_1:10959920-10959939 Msa1009490:intron 35.0%
AACTAACATGTTGCAAGTGT+TGG - chr7_1:10960009-10960028 Msa1009490:intron 35.0%
AAACAAAGGAGAGAGAAAAG+TGG - chr7_1:10960257-10960276 Msa1009490:intron 35.0%
TCGAATCGCTCAATTATCAT+AGG - chr7_1:10960454-10960473 Msa1009490:CDS 35.0%
CTCAATTATCATAGGACAGA+GGG - chr7_1:10960462-10960481 Msa1009490:CDS 35.0%
CAATTCCACATAGTACTAGT+AGG - chr7_1:10960759-10960778 Msa1009490:CDS 35.0%
TCAATCCTACTAGTACTATG+TGG + chr7_1:10960767-10960786 None:intergenic 35.0%
TGTCAATGTGAATGCAGTTA+CGG - chr7_1:10960810-10960829 Msa1009490:CDS 35.0%
! ACTCGTAATTGTACTTTTGG+TGG - chr7_1:10958609-10958628 Msa1009490:CDS 35.0%
!! AATAATCGATGCTTTTGGGT+GGG + chr7_1:10958677-10958696 None:intergenic 35.0%
!! ATTTTGATCTGAAGCAACGA+AGG + chr7_1:10958718-10958737 None:intergenic 35.0%
CATTGAACTAGGGCAATAAA+AGG + chr7_1:10958754-10958773 None:intergenic 35.0%
TGAAAATCAGTGACAAGAGA+TGG + chr7_1:10958783-10958802 None:intergenic 35.0%
GTAGTGAAAGGAGAAATAAG+AGG - chr7_1:10958946-10958965 Msa1009490:intron 35.0%
TAAGAGGATGATCAAGAATC+GGG - chr7_1:10958962-10958981 Msa1009490:intron 35.0%
TTGTATATTGTGGTGAAAGG+TGG - chr7_1:10959544-10959563 Msa1009490:intron 35.0%
GCCACACATTATATTATGCT+TGG - chr7_1:10959920-10959939 Msa1009490:intron 35.0%
AACTAACATGTTGCAAGTGT+TGG - chr7_1:10960009-10960028 Msa1009490:intron 35.0%
AAACAAAGGAGAGAGAAAAG+TGG - chr7_1:10960257-10960276 Msa1009490:intron 35.0%
TCGAATCGCTCAATTATCAT+AGG - chr7_1:10960454-10960473 Msa1009490:CDS 35.0%
CTCAATTATCATAGGACAGA+GGG - chr7_1:10960462-10960481 Msa1009490:CDS 35.0%
CAATTCCACATAGTACTAGT+AGG - chr7_1:10960759-10960778 Msa1009490:CDS 35.0%
TCAATCCTACTAGTACTATG+TGG + chr7_1:10960767-10960786 None:intergenic 35.0%
TGTCAATGTGAATGCAGTTA+CGG - chr7_1:10960810-10960829 Msa1009490:CDS 35.0%
CTTGAGTGTGAAAGTCTTGA+AGG + chr7_1:10958641-10958660 None:intergenic 40.0%
! GAATAATCGATGCTTTTGGG+TGG + chr7_1:10958678-10958697 None:intergenic 40.0%
AATCAGTGACAAGAGATGGT+GGG + chr7_1:10958779-10958798 None:intergenic 40.0%
AAATCAGTGACAAGAGATGG+TGG + chr7_1:10958780-10958799 None:intergenic 40.0%
ACATTCTGATCATACGGTGA+AGG + chr7_1:10958858-10958877 None:intergenic 40.0%
TTCACCGTATGATCAGAATG+TGG - chr7_1:10958857-10958876 Msa1009490:intron 40.0%
TCACCGTATGATCAGAATGT+GGG - chr7_1:10958858-10958877 Msa1009490:intron 40.0%
ACACCCACATTCTGATCATA+CGG + chr7_1:10958864-10958883 None:intergenic 40.0%
CTGATATTAGCCGTAGTGAA+AGG - chr7_1:10958934-10958953 Msa1009490:intron 40.0%
GGTGGGAATAGAGATTCTTA+GGG - chr7_1:10959105-10959124 Msa1009490:intron 40.0%
GGAATAGAGATTCTTAGGGA+CGG - chr7_1:10959109-10959128 Msa1009490:intron 40.0%
ATTCTTAGGGACGGATATAG+AGG - chr7_1:10959118-10959137 Msa1009490:intron 40.0%
TTCTTAGGGACGGATATAGA+GGG - chr7_1:10959119-10959138 Msa1009490:intron 40.0%
AACACAGTATTTGTAGGGGT+GGG + chr7_1:10959163-10959182 None:intergenic 40.0%
TAACACAGTATTTGTAGGGG+TGG + chr7_1:10959164-10959183 None:intergenic 40.0%
AGAGCAGCAAGTTCAACTAT+TGG - chr7_1:10959715-10959734 Msa1009490:CDS 40.0%
ACTTAGAAGACAGCAACAAG+AGG - chr7_1:10959754-10959773 Msa1009490:intron 40.0%
!! GTTGCAAGTGTTGGTGATTT+AGG - chr7_1:10960018-10960037 Msa1009490:intron 40.0%
!! CAAGTGTTGGTGATTTAGGT+CGG - chr7_1:10960022-10960041 Msa1009490:intron 40.0%
TACAATAATCGCGAAACGGA+GGG + chr7_1:10960118-10960137 None:intergenic 40.0%
ATACAATAATCGCGAAACGG+AGG + chr7_1:10960119-10960138 None:intergenic 40.0%
TTCGGTTAATTCGAAACGGA+GGG + chr7_1:10960200-10960219 None:intergenic 40.0%
ATTCGGTTAATTCGAAACGG+AGG + chr7_1:10960201-10960220 None:intergenic 40.0%
GCTCAATTATCATAGGACAG+AGG - chr7_1:10960461-10960480 Msa1009490:CDS 40.0%
ACTTCGAAAACAGCAACAAG+AGG - chr7_1:10960577-10960596 Msa1009490:intron 40.0%
GTCAATGTGAATGCAGTTAC+GGG - chr7_1:10960811-10960830 Msa1009490:CDS 40.0%
CTTGAGTGTGAAAGTCTTGA+AGG + chr7_1:10958641-10958660 None:intergenic 40.0%
! GAATAATCGATGCTTTTGGG+TGG + chr7_1:10958678-10958697 None:intergenic 40.0%
AATCAGTGACAAGAGATGGT+GGG + chr7_1:10958779-10958798 None:intergenic 40.0%
AAATCAGTGACAAGAGATGG+TGG + chr7_1:10958780-10958799 None:intergenic 40.0%
ACATTCTGATCATACGGTGA+AGG + chr7_1:10958858-10958877 None:intergenic 40.0%
TTCACCGTATGATCAGAATG+TGG - chr7_1:10958857-10958876 Msa1009490:intron 40.0%
TCACCGTATGATCAGAATGT+GGG - chr7_1:10958858-10958877 Msa1009490:intron 40.0%
ACACCCACATTCTGATCATA+CGG + chr7_1:10958864-10958883 None:intergenic 40.0%
CTGATATTAGCCGTAGTGAA+AGG - chr7_1:10958934-10958953 Msa1009490:intron 40.0%
GGTGGGAATAGAGATTCTTA+GGG - chr7_1:10959105-10959124 Msa1009490:intron 40.0%
GGAATAGAGATTCTTAGGGA+CGG - chr7_1:10959109-10959128 Msa1009490:intron 40.0%
ATTCTTAGGGACGGATATAG+AGG - chr7_1:10959118-10959137 Msa1009490:intron 40.0%
TTCTTAGGGACGGATATAGA+GGG - chr7_1:10959119-10959138 Msa1009490:intron 40.0%
AACACAGTATTTGTAGGGGT+GGG + chr7_1:10959163-10959182 None:intergenic 40.0%
TAACACAGTATTTGTAGGGG+TGG + chr7_1:10959164-10959183 None:intergenic 40.0%
AGAGCAGCAAGTTCAACTAT+TGG - chr7_1:10959715-10959734 Msa1009490:CDS 40.0%
ACTTAGAAGACAGCAACAAG+AGG - chr7_1:10959754-10959773 Msa1009490:intron 40.0%
!! GTTGCAAGTGTTGGTGATTT+AGG - chr7_1:10960018-10960037 Msa1009490:intron 40.0%
!! CAAGTGTTGGTGATTTAGGT+CGG - chr7_1:10960022-10960041 Msa1009490:intron 40.0%
TACAATAATCGCGAAACGGA+GGG + chr7_1:10960118-10960137 None:intergenic 40.0%
ATACAATAATCGCGAAACGG+AGG + chr7_1:10960119-10960138 None:intergenic 40.0%
TTCGGTTAATTCGAAACGGA+GGG + chr7_1:10960200-10960219 None:intergenic 40.0%
ATTCGGTTAATTCGAAACGG+AGG + chr7_1:10960201-10960220 None:intergenic 40.0%
GCTCAATTATCATAGGACAG+AGG - chr7_1:10960461-10960480 Msa1009490:CDS 40.0%
ACTTCGAAAACAGCAACAAG+AGG - chr7_1:10960577-10960596 Msa1009490:intron 40.0%
GTCAATGTGAATGCAGTTAC+GGG - chr7_1:10960811-10960830 Msa1009490:CDS 40.0%
! ATGGTGGGGTCATTGAACTA+GGG + chr7_1:10958764-10958783 None:intergenic 45.0%
ATCAGTGACAAGAGATGGTG+GGG + chr7_1:10958778-10958797 None:intergenic 45.0%
ATCTCTATTCCCACCCACAT+AGG + chr7_1:10959100-10959119 None:intergenic 45.0%
GGGTGGGAATAGAGATTCTT+AGG - chr7_1:10959104-10959123 Msa1009490:intron 45.0%
TCTTAGGGACGGATATAGAG+GGG - chr7_1:10959120-10959139 Msa1009490:intron 45.0%
ACACAGTATTTGTAGGGGTG+GGG + chr7_1:10959162-10959181 None:intergenic 45.0%
GCAGCAAGTTCAACTATTGG+AGG - chr7_1:10959718-10959737 Msa1009490:CDS 45.0%
GCAGAAAGTTCAGCTATTGC+AGG - chr7_1:10960541-10960560 Msa1009490:CDS 45.0%
! ATGGTGGGGTCATTGAACTA+GGG + chr7_1:10958764-10958783 None:intergenic 45.0%
ATCAGTGACAAGAGATGGTG+GGG + chr7_1:10958778-10958797 None:intergenic 45.0%
ATCTCTATTCCCACCCACAT+AGG + chr7_1:10959100-10959119 None:intergenic 45.0%
GGGTGGGAATAGAGATTCTT+AGG - chr7_1:10959104-10959123 Msa1009490:intron 45.0%
TCTTAGGGACGGATATAGAG+GGG - chr7_1:10959120-10959139 Msa1009490:intron 45.0%
ACACAGTATTTGTAGGGGTG+GGG + chr7_1:10959162-10959181 None:intergenic 45.0%
GCAGCAAGTTCAACTATTGG+AGG - chr7_1:10959718-10959737 Msa1009490:CDS 45.0%
GCAGAAAGTTCAGCTATTGC+AGG - chr7_1:10960541-10960560 Msa1009490:CDS 45.0%
!! TTATTTAGAAATATATTAAA+CGG + chr7_1:10959496-10959515 None:intergenic 5.0%
!! TTATTTAGAAATATATTAAA+CGG + chr7_1:10959496-10959515 None:intergenic 5.0%
! TTTGGGTGGGTCTGAAGTGA+GGG + chr7_1:10958664-10958683 None:intergenic 50.0%
!! TTTTGGGTGGGTCTGAAGTG+AGG + chr7_1:10958665-10958684 None:intergenic 50.0%
!! GATGGTGGGGTCATTGAACT+AGG + chr7_1:10958765-10958784 None:intergenic 50.0%
ACGCTCGCAGAAACCCTTAT+TGG + chr7_1:10958831-10958850 None:intergenic 50.0%
GCGTTCACGAGCTAGAAAAC+AGG - chr7_1:10958995-10959014 Msa1009490:intron 50.0%
ACCCACATAGGCATGGCAAT+GGG + chr7_1:10959088-10959107 None:intergenic 50.0%
ATTGCCATGCCTATGTGGGT+GGG - chr7_1:10959088-10959107 Msa1009490:intron 50.0%
TATTCCCACCCACATAGGCA+TGG + chr7_1:10959095-10959114 None:intergenic 50.0%
CTTAGGGACGGATATAGAGG+GGG - chr7_1:10959121-10959140 Msa1009490:intron 50.0%
ACAGTATTTGTAGGGGTGGG+GGG + chr7_1:10959160-10959179 None:intergenic 50.0%
CACAGTATTTGTAGGGGTGG+GGG + chr7_1:10959161-10959180 None:intergenic 50.0%
! TTACGGGAAGCAGAAAGCGT+TGG - chr7_1:10960827-10960846 Msa1009490:CDS 50.0%
! TTTGGGTGGGTCTGAAGTGA+GGG + chr7_1:10958664-10958683 None:intergenic 50.0%
!! TTTTGGGTGGGTCTGAAGTG+AGG + chr7_1:10958665-10958684 None:intergenic 50.0%
!! GATGGTGGGGTCATTGAACT+AGG + chr7_1:10958765-10958784 None:intergenic 50.0%
ACGCTCGCAGAAACCCTTAT+TGG + chr7_1:10958831-10958850 None:intergenic 50.0%
GCGTTCACGAGCTAGAAAAC+AGG - chr7_1:10958995-10959014 Msa1009490:intron 50.0%
ACCCACATAGGCATGGCAAT+GGG + chr7_1:10959088-10959107 None:intergenic 50.0%
ATTGCCATGCCTATGTGGGT+GGG - chr7_1:10959088-10959107 Msa1009490:intron 50.0%
TATTCCCACCCACATAGGCA+TGG + chr7_1:10959095-10959114 None:intergenic 50.0%
CTTAGGGACGGATATAGAGG+GGG - chr7_1:10959121-10959140 Msa1009490:intron 50.0%
ACAGTATTTGTAGGGGTGGG+GGG + chr7_1:10959160-10959179 None:intergenic 50.0%
CACAGTATTTGTAGGGGTGG+GGG + chr7_1:10959161-10959180 None:intergenic 50.0%
! TTACGGGAAGCAGAAAGCGT+TGG - chr7_1:10960827-10960846 Msa1009490:CDS 50.0%
GCGGGGTGAGGAAGGATATA+AGG + chr7_1:10959065-10959084 None:intergenic 55.0%
ACATAGGCATGGCAATGGGG+CGG + chr7_1:10959084-10959103 None:intergenic 55.0%
CCCACATAGGCATGGCAATG+GGG + chr7_1:10959087-10959106 None:intergenic 55.0%
CCCCATTGCCATGCCTATGT+GGG - chr7_1:10959084-10959103 Msa1009490:intron 55.0%
CACCCACATAGGCATGGCAA+TGG + chr7_1:10959089-10959108 None:intergenic 55.0%
CATTGCCATGCCTATGTGGG+TGG - chr7_1:10959087-10959106 Msa1009490:intron 55.0%
GCGGGGTGAGGAAGGATATA+AGG + chr7_1:10959065-10959084 None:intergenic 55.0%
ACATAGGCATGGCAATGGGG+CGG + chr7_1:10959084-10959103 None:intergenic 55.0%
CCCACATAGGCATGGCAATG+GGG + chr7_1:10959087-10959106 None:intergenic 55.0%
CCCCATTGCCATGCCTATGT+GGG - chr7_1:10959084-10959103 Msa1009490:intron 55.0%
CACCCACATAGGCATGGCAA+TGG + chr7_1:10959089-10959108 None:intergenic 55.0%
CATTGCCATGCCTATGTGGG+TGG - chr7_1:10959087-10959106 Msa1009490:intron 55.0%
ATAGGCATGGCAATGGGGCG+GGG + chr7_1:10959082-10959101 None:intergenic 60.0%
CATAGGCATGGCAATGGGGC+GGG + chr7_1:10959083-10959102 None:intergenic 60.0%
GCCCCATTGCCATGCCTATG+TGG - chr7_1:10959083-10959102 Msa1009490:intron 60.0%
TATTTGTAGGGGTGGGGGGC+TGG + chr7_1:10959156-10959175 None:intergenic 60.0%
ATAGGCATGGCAATGGGGCG+GGG + chr7_1:10959082-10959101 None:intergenic 60.0%
CATAGGCATGGCAATGGGGC+GGG + chr7_1:10959083-10959102 None:intergenic 60.0%
GCCCCATTGCCATGCCTATG+TGG - chr7_1:10959083-10959102 Msa1009490:intron 60.0%
TATTTGTAGGGGTGGGGGGC+TGG + chr7_1:10959156-10959175 None:intergenic 60.0%
GCAATGGGGCGGGGTGAGGA+AGG + chr7_1:10959073-10959092 None:intergenic 70.0%
CATGGCAATGGGGCGGGGTG+AGG + chr7_1:10959077-10959096 None:intergenic 70.0%
GCAATGGGGCGGGGTGAGGA+AGG + chr7_1:10959073-10959092 None:intergenic 70.0%
CATGGCAATGGGGCGGGGTG+AGG + chr7_1:10959077-10959096 None:intergenic 70.0%
!!! AGGGGTGGGGGGCTGGTCGC+TGG + chr7_1:10959149-10959168 None:intergenic 80.0%
!!! AGGGGTGGGGGGCTGGTCGC+TGG + chr7_1:10959149-10959168 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 10958603 10960865 10958603 ID=Msa1009490;Name=Msa1009490
chr7_1 mRNA 10958603 10960865 10958603 ID=Msa1009490-mRNA-1;Parent=Msa1009490;Name=Msa1009490-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.75|0.33|0.5|4|0|173
chr7_1 exon 10960620 10960865 10960620 ID=Msa1009490-mRNA-1:exon:2943;Parent=Msa1009490-mRNA-1
chr7_1 exon 10960437 10960595 10960437 ID=Msa1009490-mRNA-1:exon:2942;Parent=Msa1009490-mRNA-1
chr7_1 exon 10959693 10959770 10959693 ID=Msa1009490-mRNA-1:exon:2941;Parent=Msa1009490-mRNA-1
chr7_1 exon 10958603 10958641 10958603 ID=Msa1009490-mRNA-1:exon:2940;Parent=Msa1009490-mRNA-1
chr7_1 CDS 10960620 10960865 10960620 ID=Msa1009490-mRNA-1:cds;Parent=Msa1009490-mRNA-1
chr7_1 CDS 10960437 10960595 10960437 ID=Msa1009490-mRNA-1:cds;Parent=Msa1009490-mRNA-1
chr7_1 CDS 10959693 10959770 10959693 ID=Msa1009490-mRNA-1:cds;Parent=Msa1009490-mRNA-1
chr7_1 CDS 10958603 10958641 10958603 ID=Msa1009490-mRNA-1:cds;Parent=Msa1009490-mRNA-1
Gene Sequence

>Msa1009490

ATGAGTACTCGTAATTGTACTTTTGGTGGTGTTATCCTTCAAGACTTTCACACTCAAGCCCTCACTTCAGACCCACCCAAAAGCATCGATTATTCTTCTAATAATTTATCTTCCTTCGTTGCTTCAGATCAAAATAACAATAATGCTTCCTTTTATTGCCCTAGTTCAATGACCCCACCATCTCTTGTCACTGATTTTCACTTTGTTCACCAAAACATTTCTGCACCAATAAGGGTTTCTGCGAGCAATGTGGGTGTTGCTGCATCTAATTCTTTCATTTCTTTTGGTAAGAGATCTTGTGAAGCAACTGATATTAGCCGTAGTGAAAGGAGAAATAAGAGGATGATCAAGAATCGGGAATCTGCTGCGCGTTCACGAGCTAGAAAACAGGCAAAAATTCTTTCTGCTTACACGATTGAACTAGAGCAGCAAGTTCAACTATTGGAGGAAGAGAATGCAAGACTTAGAAGACAGCAACAAGAGTTACGGGAAGCAGAAAGCGTTGGTCAGCAAAAGAAATAG

Protein sequence

>Msa1009490

MSTRNCTFGGVILQDFHTQALTSDPPKSIDYSSNNLSSFVASDQNNNNASFYCPSSMTPPSLVTDFHFVHQNISAPIRVSASNVGVAASNSFISFGKRSCEATDISRSERRNKRMIKNRESAARSRARKQAKILSAYTIELEQQVQLLEEENARLRRQQQELREAESVGQQKK*