Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009490 | AES95190.2 | 63.256 | 215 | 37 | 6 | 1 | 173 | 23 | 237 | 1.35e-65 | 211 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009490 | sp|Q84JK2|FD_ARATH | 56.250 | 80 | 30 | 1 | 94 | 173 | 200 | 274 | 4.41e-18 | 82.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009490 | G7JXL9 | 63.256 | 215 | 37 | 6 | 1 | 173 | 23 | 237 | 6.44e-66 | 211 |
Gene ID | Type | Classification |
---|---|---|
Msa1009490 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009490 | MtrunA17_Chr5g0405951 | 63.256 | 215 | 37 | 6 | 1 | 173 | 23 | 237 | 1.24e-69 | 211 |
Msa1009490 | MtrunA17_Chr7g0254991 | 34.872 | 195 | 86 | 8 | 4 | 168 | 116 | 299 | 5.23e-15 | 71.2 |
Msa1009490 | MtrunA17_Chr3g0133971 | 62.500 | 56 | 16 | 1 | 109 | 164 | 352 | 402 | 1.22e-13 | 67.8 |
Msa1009490 | MtrunA17_Chr4g0044771 | 62.069 | 58 | 17 | 1 | 109 | 166 | 301 | 353 | 2.88e-13 | 66.6 |
Msa1009490 | MtrunA17_Chr3g0080341 | 65.385 | 52 | 13 | 1 | 109 | 160 | 251 | 297 | 2.01e-12 | 63.9 |
Msa1009490 | MtrunA17_Chr2g0321411 | 35.976 | 164 | 80 | 6 | 7 | 166 | 117 | 259 | 3.17e-12 | 63.2 |
Msa1009490 | MtrunA17_Chr8g0355121 | 40.777 | 103 | 48 | 4 | 66 | 160 | 191 | 288 | 1.12e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009490 | AT4G35900.1 | 56.250 | 80 | 30 | 1 | 94 | 173 | 200 | 274 | 4.49e-19 | 82.4 |
Msa1009490 | AT2G17770.2 | 52.941 | 85 | 35 | 1 | 89 | 173 | 105 | 184 | 6.98e-18 | 77.4 |
Msa1009490 | AT3G56850.1 | 51.807 | 83 | 34 | 2 | 79 | 160 | 195 | 272 | 1.22e-13 | 67.4 |
Msa1009490 | AT1G45249.1 | 60.345 | 58 | 18 | 1 | 109 | 166 | 337 | 389 | 4.28e-13 | 66.6 |
Msa1009490 | AT2G41070.4 | 65.000 | 60 | 12 | 2 | 109 | 168 | 200 | 250 | 4.67e-13 | 65.9 |
Msa1009490 | AT2G41070.3 | 65.000 | 60 | 12 | 2 | 109 | 168 | 191 | 241 | 4.95e-13 | 65.5 |
Msa1009490 | AT2G41070.1 | 65.000 | 60 | 12 | 2 | 109 | 168 | 191 | 241 | 4.95e-13 | 65.5 |
Msa1009490 | AT2G41070.2 | 65.000 | 60 | 12 | 2 | 109 | 168 | 191 | 241 | 4.95e-13 | 65.5 |
Msa1009490 | AT1G45249.7 | 60.345 | 58 | 18 | 1 | 109 | 166 | 352 | 404 | 5.60e-13 | 66.2 |
Msa1009490 | AT1G45249.6 | 60.345 | 58 | 18 | 1 | 109 | 166 | 352 | 404 | 5.60e-13 | 66.2 |
Msa1009490 | AT2G41070.5 | 73.469 | 49 | 8 | 1 | 109 | 157 | 191 | 234 | 1.78e-12 | 63.9 |
Msa1009490 | AT1G45249.3 | 54.688 | 64 | 23 | 1 | 109 | 166 | 337 | 400 | 2.22e-12 | 64.7 |
Msa1009490 | AT4G34000.1 | 58.621 | 58 | 19 | 1 | 109 | 166 | 373 | 425 | 3.12e-12 | 64.3 |
Msa1009490 | AT4G34000.4 | 58.621 | 58 | 19 | 1 | 109 | 166 | 373 | 425 | 3.12e-12 | 64.3 |
Msa1009490 | AT4G34000.2 | 58.621 | 58 | 19 | 1 | 109 | 166 | 373 | 425 | 3.12e-12 | 64.3 |
Msa1009490 | AT3G19290.4 | 41.935 | 93 | 48 | 2 | 74 | 166 | 318 | 404 | 6.51e-12 | 63.2 |
Msa1009490 | AT2G36270.3 | 62.963 | 54 | 15 | 1 | 109 | 162 | 356 | 404 | 6.61e-12 | 63.2 |
Msa1009490 | AT3G19290.1 | 41.935 | 93 | 48 | 2 | 74 | 166 | 318 | 404 | 7.47e-12 | 63.2 |
Msa1009490 | AT3G19290.5 | 41.935 | 93 | 48 | 2 | 74 | 166 | 318 | 404 | 7.47e-12 | 63.2 |
Msa1009490 | AT3G19290.3 | 41.935 | 93 | 48 | 2 | 74 | 166 | 318 | 404 | 7.48e-12 | 63.2 |
Msa1009490 | AT2G36270.1 | 62.963 | 54 | 15 | 1 | 109 | 162 | 356 | 404 | 8.22e-12 | 62.8 |
Msa1009490 | AT2G36270.2 | 62.963 | 54 | 15 | 1 | 109 | 162 | 356 | 404 | 8.22e-12 | 62.8 |
Msa1009490 | AT1G49720.2 | 59.259 | 54 | 17 | 1 | 109 | 162 | 312 | 360 | 2.72e-11 | 61.2 |
Msa1009490 | AT4G34000.3 | 62.745 | 51 | 14 | 1 | 109 | 159 | 373 | 418 | 3.07e-11 | 61.2 |
Msa1009490 | AT1G49720.1 | 59.259 | 54 | 17 | 1 | 109 | 162 | 312 | 360 | 3.35e-11 | 61.2 |
Msa1009490 | AT1G49720.3 | 59.259 | 54 | 17 | 1 | 109 | 162 | 312 | 360 | 3.35e-11 | 61.2 |
Find 27 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACGCTCGCAGAAACCCTTAT+TGG | 0.225110 | 7_1:+10960618 | None:intergenic |
AAAACATTTCTGCACCAATA+AGG | 0.253039 | 7_1:-10960632 | Msa1009490:CDS |
AGAAGAATAATCGATGCTTT+TGG | 0.258209 | 7_1:+10960767 | None:intergenic |
TCTAATTCTTTCATTTCTTT+TGG | 0.267657 | 7_1:-10960555 | Msa1009490:CDS |
AGTACTCGTAATTGTACTTT+TGG | 0.310858 | 7_1:-10960840 | Msa1009490:CDS |
AAACATTTCTGCACCAATAA+GGG | 0.372649 | 7_1:-10960631 | Msa1009490:CDS |
CATTGAACTAGGGCAATAAA+AGG | 0.373167 | 7_1:+10960695 | None:intergenic |
TTATTGGTGCAGAAATGTTT+TGG | 0.409602 | 7_1:+10960634 | None:intergenic |
ATAAGAGGATGATCAAGAAT+CGG | 0.446318 | 7_1:-10960485 | Msa1009490:CDS |
AGAGCAGCAAGTTCAACTAT+TGG | 0.448847 | 7_1:-10959731 | Msa1009490:CDS |
TTTGGGTGGGTCTGAAGTGA+GGG | 0.456936 | 7_1:+10960785 | None:intergenic |
CTTGAGTGTGAAAGTCTTGA+AGG | 0.469462 | 7_1:+10960808 | None:intergenic |
GATGGTGGGGTCATTGAACT+AGG | 0.476787 | 7_1:+10960684 | None:intergenic |
TAAGAGGATGATCAAGAATC+GGG | 0.505249 | 7_1:-10960484 | Msa1009490:CDS |
TCTTATTTCTCCTTTCACTA+CGG | 0.532558 | 7_1:+10960502 | None:intergenic |
GCGTTCACGAGCTAGAAAAC+AGG | 0.535637 | 7_1:-10960451 | Msa1009490:CDS |
TGAAAATCAGTGACAAGAGA+TGG | 0.550991 | 7_1:+10960666 | None:intergenic |
ATCAGTGACAAGAGATGGTG+GGG | 0.566918 | 7_1:+10960671 | None:intergenic |
CTGATATTAGCCGTAGTGAA+AGG | 0.586903 | 7_1:-10960512 | Msa1009490:CDS |
AATCAGTGACAAGAGATGGT+GGG | 0.594382 | 7_1:+10960670 | None:intergenic |
GCAGCAAGTTCAACTATTGG+AGG | 0.594793 | 7_1:-10959728 | Msa1009490:CDS |
AAATCAGTGACAAGAGATGG+TGG | 0.615325 | 7_1:+10960669 | None:intergenic |
ACTTAGAAGACAGCAACAAG+AGG | 0.615687 | 7_1:-10959692 | Msa1009490:intron |
ATGGTGGGGTCATTGAACTA+GGG | 0.621945 | 7_1:+10960685 | None:intergenic |
TCACCGTATGATCAGAATGT+GGG | 0.625766 | 7_1:-10960588 | Msa1009490:intron |
GTAGTGAAAGGAGAAATAAG+AGG | 0.627501 | 7_1:-10960500 | Msa1009490:CDS |
TTACGGGAAGCAGAAAGCGT+TGG | 0.638395 | 7_1:-10958619 | Msa1009490:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTATAATGTTATTAAAAAA+TGG | + | chr7_1:10959214-10959233 | None:intergenic | 10.0% |
!! | TATTTAGAAATATATTAAAC+GGG | + | chr7_1:10959495-10959514 | None:intergenic | 10.0% |
!!! | TTTTTTTTTTTTTGAAAGAA+AGG | - | chr7_1:10959578-10959597 | Msa1009490:intron | 10.0% |
!! | AATATTAATTAGAGTTATAA+AGG | - | chr7_1:10960365-10960384 | Msa1009490:intron | 10.0% |
!!! | AATTTAGGTTTTTTTTTTTT+TGG | - | chr7_1:10960786-10960805 | Msa1009490:CDS | 10.0% |
!!! | ATTTAGGTTTTTTTTTTTTT+GGG | - | chr7_1:10960787-10960806 | Msa1009490:CDS | 10.0% |
!! | GTTATAATGTTATTAAAAAA+TGG | + | chr7_1:10959214-10959233 | None:intergenic | 10.0% |
!! | TATTTAGAAATATATTAAAC+GGG | + | chr7_1:10959495-10959514 | None:intergenic | 10.0% |
!!! | TTTTTTTTTTTTTGAAAGAA+AGG | - | chr7_1:10959578-10959597 | Msa1009490:intron | 10.0% |
!! | AATATTAATTAGAGTTATAA+AGG | - | chr7_1:10960365-10960384 | Msa1009490:intron | 10.0% |
!!! | AATTTAGGTTTTTTTTTTTT+TGG | - | chr7_1:10960786-10960805 | Msa1009490:CDS | 10.0% |
!!! | ATTTAGGTTTTTTTTTTTTT+GGG | - | chr7_1:10960787-10960806 | Msa1009490:CDS | 10.0% |
!! | ATTTAGAAATATATTAAACG+GGG | + | chr7_1:10959494-10959513 | None:intergenic | 15.0% |
!!! | AATTTAAAGTTTGTATATTG+TGG | - | chr7_1:10959534-10959553 | Msa1009490:intron | 15.0% |
!!! | TATGTATTTGGTATAAATTT+TGG | - | chr7_1:10959842-10959861 | Msa1009490:intron | 15.0% |
!! | TTCAAAAAAAAATTATGATG+TGG | - | chr7_1:10959985-10960004 | Msa1009490:intron | 15.0% |
!!! | ATGAACAATAACTTTTTTTT+TGG | + | chr7_1:10960084-10960103 | None:intergenic | 15.0% |
!!! | ATGAACAATAACTTTTTTTT+TGG | + | chr7_1:10960084-10960103 | None:intergenic | 15.0% |
!! | TATTGTATTAGAAAATGAAA+TGG | - | chr7_1:10960402-10960421 | Msa1009490:intron | 15.0% |
!! | GAAAAAAAATGTGATATATT+TGG | + | chr7_1:10960676-10960695 | None:intergenic | 15.0% |
!! | ATTTAGAAATATATTAAACG+GGG | + | chr7_1:10959494-10959513 | None:intergenic | 15.0% |
!!! | AATTTAAAGTTTGTATATTG+TGG | - | chr7_1:10959534-10959553 | Msa1009490:intron | 15.0% |
!!! | TATGTATTTGGTATAAATTT+TGG | - | chr7_1:10959842-10959861 | Msa1009490:intron | 15.0% |
!! | TTCAAAAAAAAATTATGATG+TGG | - | chr7_1:10959985-10960004 | Msa1009490:intron | 15.0% |
!!! | ATGAACAATAACTTTTTTTT+TGG | + | chr7_1:10960084-10960103 | None:intergenic | 15.0% |
!!! | ATGAACAATAACTTTTTTTT+TGG | + | chr7_1:10960084-10960103 | None:intergenic | 15.0% |
!! | TATTGTATTAGAAAATGAAA+TGG | - | chr7_1:10960402-10960421 | Msa1009490:intron | 15.0% |
!! | GAAAAAAAATGTGATATATT+TGG | + | chr7_1:10960676-10960695 | None:intergenic | 15.0% |
!!! | TCTAATTCTTTCATTTCTTT+TGG | - | chr7_1:10958891-10958910 | Msa1009490:intron | 20.0% |
!! | AATATAACACAGTATTTGTA+GGG | + | chr7_1:10959168-10959187 | None:intergenic | 20.0% |
!! | TAATATAACACAGTATTTGT+AGG | + | chr7_1:10959169-10959188 | None:intergenic | 20.0% |
!! | ATGATTTAATTGAATACATG+CGG | + | chr7_1:10959302-10959321 | None:intergenic | 20.0% |
!! | TGTGAATTAATCTAGAAAAT+TGG | - | chr7_1:10959351-10959370 | Msa1009490:intron | 20.0% |
!! | TATCATAGAATGATTTGATA+GGG | - | chr7_1:10959374-10959393 | Msa1009490:intron | 20.0% |
!! | TTTAGAAATATATTAAACGG+GGG | + | chr7_1:10959493-10959512 | None:intergenic | 20.0% |
!! | CAAATTAAAGAGAATGAAAT+GGG | + | chr7_1:10959791-10959810 | None:intergenic | 20.0% |
!! | ACAAATTAAAGAGAATGAAA+TGG | + | chr7_1:10959792-10959811 | None:intergenic | 20.0% |
!!! | GGTGAAATTTTTTATGTATT+TGG | - | chr7_1:10959830-10959849 | Msa1009490:intron | 20.0% |
!! | AACATAAAATATTTACGATG+TGG | - | chr7_1:10959961-10959980 | Msa1009490:intron | 20.0% |
!! | TAAGACAAATGTATAAACAA+AGG | - | chr7_1:10960243-10960262 | Msa1009490:intron | 20.0% |
!! | CAAATTAAAGACAATGAAAT+GGG | + | chr7_1:10960614-10960633 | None:intergenic | 20.0% |
!! | ACAAATTAAAGACAATGAAA+TGG | + | chr7_1:10960615-10960634 | None:intergenic | 20.0% |
!!! | TCTAATTCTTTCATTTCTTT+TGG | - | chr7_1:10958891-10958910 | Msa1009490:intron | 20.0% |
!! | AATATAACACAGTATTTGTA+GGG | + | chr7_1:10959168-10959187 | None:intergenic | 20.0% |
!! | TAATATAACACAGTATTTGT+AGG | + | chr7_1:10959169-10959188 | None:intergenic | 20.0% |
!! | ATGATTTAATTGAATACATG+CGG | + | chr7_1:10959302-10959321 | None:intergenic | 20.0% |
!! | TGTGAATTAATCTAGAAAAT+TGG | - | chr7_1:10959351-10959370 | Msa1009490:intron | 20.0% |
!! | TATCATAGAATGATTTGATA+GGG | - | chr7_1:10959374-10959393 | Msa1009490:intron | 20.0% |
!! | TTTAGAAATATATTAAACGG+GGG | + | chr7_1:10959493-10959512 | None:intergenic | 20.0% |
!! | CAAATTAAAGAGAATGAAAT+GGG | + | chr7_1:10959791-10959810 | None:intergenic | 20.0% |
!! | ACAAATTAAAGAGAATGAAA+TGG | + | chr7_1:10959792-10959811 | None:intergenic | 20.0% |
!!! | GGTGAAATTTTTTATGTATT+TGG | - | chr7_1:10959830-10959849 | Msa1009490:intron | 20.0% |
!! | AACATAAAATATTTACGATG+TGG | - | chr7_1:10959961-10959980 | Msa1009490:intron | 20.0% |
!! | TAAGACAAATGTATAAACAA+AGG | - | chr7_1:10960243-10960262 | Msa1009490:intron | 20.0% |
!! | CAAATTAAAGACAATGAAAT+GGG | + | chr7_1:10960614-10960633 | None:intergenic | 20.0% |
!! | ACAAATTAAAGACAATGAAA+TGG | + | chr7_1:10960615-10960634 | None:intergenic | 20.0% |
! | TGTTTGAAAAGAGATTCTTA+GGG | + | chr7_1:10959037-10959056 | None:intergenic | 25.0% |
! | ATATAACACAGTATTTGTAG+GGG | + | chr7_1:10959167-10959186 | None:intergenic | 25.0% |
! | TCAAATAGACATTTGTAGAA+AGG | - | chr7_1:10959323-10959342 | Msa1009490:intron | 25.0% |
! | GTATCATAGAATGATTTGAT+AGG | - | chr7_1:10959373-10959392 | Msa1009490:intron | 25.0% |
!!! | GATTCATTTACTTTTTTGTG+TGG | - | chr7_1:10959666-10959685 | Msa1009490:intron | 25.0% |
!! | TGTTCTTTTCAGTCAAAAAA+TGG | - | chr7_1:10959809-10959828 | Msa1009490:intron | 25.0% |
! | TAAATACAATAATCGCGAAA+CGG | + | chr7_1:10960122-10960141 | None:intergenic | 25.0% |
! | ATAATTCGGTTAATTCGAAA+CGG | + | chr7_1:10960204-10960223 | None:intergenic | 25.0% |
! | TGTGAAATGAGCAAATAATT+CGG | + | chr7_1:10960218-10960237 | None:intergenic | 25.0% |
! | TAACTGTTCTTGTTAAGTAT+TGG | - | chr7_1:10960283-10960302 | Msa1009490:intron | 25.0% |
! | GAAATATAATGAATTGAGAG+TGG | - | chr7_1:10960335-10960354 | Msa1009490:intron | 25.0% |
!! | ATTGATTCATTTACTTAGTG+TGG | - | chr7_1:10960489-10960508 | Msa1009490:CDS | 25.0% |
! | TGTTTGAAAAGAGATTCTTA+GGG | + | chr7_1:10959037-10959056 | None:intergenic | 25.0% |
! | ATATAACACAGTATTTGTAG+GGG | + | chr7_1:10959167-10959186 | None:intergenic | 25.0% |
! | TCAAATAGACATTTGTAGAA+AGG | - | chr7_1:10959323-10959342 | Msa1009490:intron | 25.0% |
! | GTATCATAGAATGATTTGAT+AGG | - | chr7_1:10959373-10959392 | Msa1009490:intron | 25.0% |
!!! | GATTCATTTACTTTTTTGTG+TGG | - | chr7_1:10959666-10959685 | Msa1009490:intron | 25.0% |
!! | TGTTCTTTTCAGTCAAAAAA+TGG | - | chr7_1:10959809-10959828 | Msa1009490:intron | 25.0% |
! | TAAATACAATAATCGCGAAA+CGG | + | chr7_1:10960122-10960141 | None:intergenic | 25.0% |
! | ATAATTCGGTTAATTCGAAA+CGG | + | chr7_1:10960204-10960223 | None:intergenic | 25.0% |
! | TGTGAAATGAGCAAATAATT+CGG | + | chr7_1:10960218-10960237 | None:intergenic | 25.0% |
! | TAACTGTTCTTGTTAAGTAT+TGG | - | chr7_1:10960283-10960302 | Msa1009490:intron | 25.0% |
! | GAAATATAATGAATTGAGAG+TGG | - | chr7_1:10960335-10960354 | Msa1009490:intron | 25.0% |
!! | ATTGATTCATTTACTTAGTG+TGG | - | chr7_1:10960489-10960508 | Msa1009490:CDS | 25.0% |
! | AGTACTCGTAATTGTACTTT+TGG | - | chr7_1:10958606-10958625 | Msa1009490:CDS | 30.0% |
! | GAAGAATAATCGATGCTTTT+GGG | + | chr7_1:10958681-10958700 | None:intergenic | 30.0% |
! | AGAAGAATAATCGATGCTTT+TGG | + | chr7_1:10958682-10958701 | None:intergenic | 30.0% |
! | TTATTGGTGCAGAAATGTTT+TGG | + | chr7_1:10958815-10958834 | None:intergenic | 30.0% |
AAAACATTTCTGCACCAATA+AGG | - | chr7_1:10958814-10958833 | Msa1009490:intron | 30.0% | |
AAACATTTCTGCACCAATAA+GGG | - | chr7_1:10958815-10958834 | Msa1009490:intron | 30.0% | |
! | TCTTATTTCTCCTTTCACTA+CGG | + | chr7_1:10958947-10958966 | None:intergenic | 30.0% |
ATAAGAGGATGATCAAGAAT+CGG | - | chr7_1:10958961-10958980 | Msa1009490:intron | 30.0% | |
GTGTTTGAAAAGAGATTCTT+AGG | + | chr7_1:10959038-10959057 | None:intergenic | 30.0% | |
AGTTTGTATATTGTGGTGAA+AGG | - | chr7_1:10959541-10959560 | Msa1009490:intron | 30.0% | |
GGAGTATGCTTATAACATAA+AGG | - | chr7_1:10959599-10959618 | Msa1009490:intron | 30.0% | |
GTATGCTTATAACATAAAGG+TGG | - | chr7_1:10959602-10959621 | Msa1009490:intron | 30.0% | |
!!! | CTTTTTTGTGTGGTTATTTC+AGG | - | chr7_1:10959676-10959695 | Msa1009490:intron | 30.0% |
ACCAAGCATAATATAATGTG+TGG | + | chr7_1:10959924-10959943 | None:intergenic | 30.0% | |
TCACTTTGCATTTATGTTAG+TGG | + | chr7_1:10960317-10960336 | None:intergenic | 30.0% | |
! | TTACTTAGTGTGGTTATTTC+AGG | - | chr7_1:10960499-10960518 | Msa1009490:CDS | 30.0% |
GTACTAGTAGGATTGAATTT+AGG | - | chr7_1:10960771-10960790 | Msa1009490:CDS | 30.0% | |
! | AGTACTCGTAATTGTACTTT+TGG | - | chr7_1:10958606-10958625 | Msa1009490:CDS | 30.0% |
! | GAAGAATAATCGATGCTTTT+GGG | + | chr7_1:10958681-10958700 | None:intergenic | 30.0% |
! | AGAAGAATAATCGATGCTTT+TGG | + | chr7_1:10958682-10958701 | None:intergenic | 30.0% |
! | TTATTGGTGCAGAAATGTTT+TGG | + | chr7_1:10958815-10958834 | None:intergenic | 30.0% |
AAAACATTTCTGCACCAATA+AGG | - | chr7_1:10958814-10958833 | Msa1009490:intron | 30.0% | |
AAACATTTCTGCACCAATAA+GGG | - | chr7_1:10958815-10958834 | Msa1009490:intron | 30.0% | |
! | TCTTATTTCTCCTTTCACTA+CGG | + | chr7_1:10958947-10958966 | None:intergenic | 30.0% |
ATAAGAGGATGATCAAGAAT+CGG | - | chr7_1:10958961-10958980 | Msa1009490:intron | 30.0% | |
GTGTTTGAAAAGAGATTCTT+AGG | + | chr7_1:10959038-10959057 | None:intergenic | 30.0% | |
AGTTTGTATATTGTGGTGAA+AGG | - | chr7_1:10959541-10959560 | Msa1009490:intron | 30.0% | |
GGAGTATGCTTATAACATAA+AGG | - | chr7_1:10959599-10959618 | Msa1009490:intron | 30.0% | |
GTATGCTTATAACATAAAGG+TGG | - | chr7_1:10959602-10959621 | Msa1009490:intron | 30.0% | |
!!! | CTTTTTTGTGTGGTTATTTC+AGG | - | chr7_1:10959676-10959695 | Msa1009490:intron | 30.0% |
ACCAAGCATAATATAATGTG+TGG | + | chr7_1:10959924-10959943 | None:intergenic | 30.0% | |
TCACTTTGCATTTATGTTAG+TGG | + | chr7_1:10960317-10960336 | None:intergenic | 30.0% | |
! | TTACTTAGTGTGGTTATTTC+AGG | - | chr7_1:10960499-10960518 | Msa1009490:CDS | 30.0% |
GTACTAGTAGGATTGAATTT+AGG | - | chr7_1:10960771-10960790 | Msa1009490:CDS | 30.0% | |
! | ACTCGTAATTGTACTTTTGG+TGG | - | chr7_1:10958609-10958628 | Msa1009490:CDS | 35.0% |
!! | AATAATCGATGCTTTTGGGT+GGG | + | chr7_1:10958677-10958696 | None:intergenic | 35.0% |
!! | ATTTTGATCTGAAGCAACGA+AGG | + | chr7_1:10958718-10958737 | None:intergenic | 35.0% |
CATTGAACTAGGGCAATAAA+AGG | + | chr7_1:10958754-10958773 | None:intergenic | 35.0% | |
TGAAAATCAGTGACAAGAGA+TGG | + | chr7_1:10958783-10958802 | None:intergenic | 35.0% | |
GTAGTGAAAGGAGAAATAAG+AGG | - | chr7_1:10958946-10958965 | Msa1009490:intron | 35.0% | |
TAAGAGGATGATCAAGAATC+GGG | - | chr7_1:10958962-10958981 | Msa1009490:intron | 35.0% | |
TTGTATATTGTGGTGAAAGG+TGG | - | chr7_1:10959544-10959563 | Msa1009490:intron | 35.0% | |
GCCACACATTATATTATGCT+TGG | - | chr7_1:10959920-10959939 | Msa1009490:intron | 35.0% | |
AACTAACATGTTGCAAGTGT+TGG | - | chr7_1:10960009-10960028 | Msa1009490:intron | 35.0% | |
AAACAAAGGAGAGAGAAAAG+TGG | - | chr7_1:10960257-10960276 | Msa1009490:intron | 35.0% | |
TCGAATCGCTCAATTATCAT+AGG | - | chr7_1:10960454-10960473 | Msa1009490:CDS | 35.0% | |
CTCAATTATCATAGGACAGA+GGG | - | chr7_1:10960462-10960481 | Msa1009490:CDS | 35.0% | |
CAATTCCACATAGTACTAGT+AGG | - | chr7_1:10960759-10960778 | Msa1009490:CDS | 35.0% | |
TCAATCCTACTAGTACTATG+TGG | + | chr7_1:10960767-10960786 | None:intergenic | 35.0% | |
TGTCAATGTGAATGCAGTTA+CGG | - | chr7_1:10960810-10960829 | Msa1009490:CDS | 35.0% | |
! | ACTCGTAATTGTACTTTTGG+TGG | - | chr7_1:10958609-10958628 | Msa1009490:CDS | 35.0% |
!! | AATAATCGATGCTTTTGGGT+GGG | + | chr7_1:10958677-10958696 | None:intergenic | 35.0% |
!! | ATTTTGATCTGAAGCAACGA+AGG | + | chr7_1:10958718-10958737 | None:intergenic | 35.0% |
CATTGAACTAGGGCAATAAA+AGG | + | chr7_1:10958754-10958773 | None:intergenic | 35.0% | |
TGAAAATCAGTGACAAGAGA+TGG | + | chr7_1:10958783-10958802 | None:intergenic | 35.0% | |
GTAGTGAAAGGAGAAATAAG+AGG | - | chr7_1:10958946-10958965 | Msa1009490:intron | 35.0% | |
TAAGAGGATGATCAAGAATC+GGG | - | chr7_1:10958962-10958981 | Msa1009490:intron | 35.0% | |
TTGTATATTGTGGTGAAAGG+TGG | - | chr7_1:10959544-10959563 | Msa1009490:intron | 35.0% | |
GCCACACATTATATTATGCT+TGG | - | chr7_1:10959920-10959939 | Msa1009490:intron | 35.0% | |
AACTAACATGTTGCAAGTGT+TGG | - | chr7_1:10960009-10960028 | Msa1009490:intron | 35.0% | |
AAACAAAGGAGAGAGAAAAG+TGG | - | chr7_1:10960257-10960276 | Msa1009490:intron | 35.0% | |
TCGAATCGCTCAATTATCAT+AGG | - | chr7_1:10960454-10960473 | Msa1009490:CDS | 35.0% | |
CTCAATTATCATAGGACAGA+GGG | - | chr7_1:10960462-10960481 | Msa1009490:CDS | 35.0% | |
CAATTCCACATAGTACTAGT+AGG | - | chr7_1:10960759-10960778 | Msa1009490:CDS | 35.0% | |
TCAATCCTACTAGTACTATG+TGG | + | chr7_1:10960767-10960786 | None:intergenic | 35.0% | |
TGTCAATGTGAATGCAGTTA+CGG | - | chr7_1:10960810-10960829 | Msa1009490:CDS | 35.0% | |
CTTGAGTGTGAAAGTCTTGA+AGG | + | chr7_1:10958641-10958660 | None:intergenic | 40.0% | |
! | GAATAATCGATGCTTTTGGG+TGG | + | chr7_1:10958678-10958697 | None:intergenic | 40.0% |
AATCAGTGACAAGAGATGGT+GGG | + | chr7_1:10958779-10958798 | None:intergenic | 40.0% | |
AAATCAGTGACAAGAGATGG+TGG | + | chr7_1:10958780-10958799 | None:intergenic | 40.0% | |
ACATTCTGATCATACGGTGA+AGG | + | chr7_1:10958858-10958877 | None:intergenic | 40.0% | |
TTCACCGTATGATCAGAATG+TGG | - | chr7_1:10958857-10958876 | Msa1009490:intron | 40.0% | |
TCACCGTATGATCAGAATGT+GGG | - | chr7_1:10958858-10958877 | Msa1009490:intron | 40.0% | |
ACACCCACATTCTGATCATA+CGG | + | chr7_1:10958864-10958883 | None:intergenic | 40.0% | |
CTGATATTAGCCGTAGTGAA+AGG | - | chr7_1:10958934-10958953 | Msa1009490:intron | 40.0% | |
GGTGGGAATAGAGATTCTTA+GGG | - | chr7_1:10959105-10959124 | Msa1009490:intron | 40.0% | |
GGAATAGAGATTCTTAGGGA+CGG | - | chr7_1:10959109-10959128 | Msa1009490:intron | 40.0% | |
ATTCTTAGGGACGGATATAG+AGG | - | chr7_1:10959118-10959137 | Msa1009490:intron | 40.0% | |
TTCTTAGGGACGGATATAGA+GGG | - | chr7_1:10959119-10959138 | Msa1009490:intron | 40.0% | |
AACACAGTATTTGTAGGGGT+GGG | + | chr7_1:10959163-10959182 | None:intergenic | 40.0% | |
TAACACAGTATTTGTAGGGG+TGG | + | chr7_1:10959164-10959183 | None:intergenic | 40.0% | |
AGAGCAGCAAGTTCAACTAT+TGG | - | chr7_1:10959715-10959734 | Msa1009490:CDS | 40.0% | |
ACTTAGAAGACAGCAACAAG+AGG | - | chr7_1:10959754-10959773 | Msa1009490:intron | 40.0% | |
!! | GTTGCAAGTGTTGGTGATTT+AGG | - | chr7_1:10960018-10960037 | Msa1009490:intron | 40.0% |
!! | CAAGTGTTGGTGATTTAGGT+CGG | - | chr7_1:10960022-10960041 | Msa1009490:intron | 40.0% |
TACAATAATCGCGAAACGGA+GGG | + | chr7_1:10960118-10960137 | None:intergenic | 40.0% | |
ATACAATAATCGCGAAACGG+AGG | + | chr7_1:10960119-10960138 | None:intergenic | 40.0% | |
TTCGGTTAATTCGAAACGGA+GGG | + | chr7_1:10960200-10960219 | None:intergenic | 40.0% | |
ATTCGGTTAATTCGAAACGG+AGG | + | chr7_1:10960201-10960220 | None:intergenic | 40.0% | |
GCTCAATTATCATAGGACAG+AGG | - | chr7_1:10960461-10960480 | Msa1009490:CDS | 40.0% | |
ACTTCGAAAACAGCAACAAG+AGG | - | chr7_1:10960577-10960596 | Msa1009490:intron | 40.0% | |
GTCAATGTGAATGCAGTTAC+GGG | - | chr7_1:10960811-10960830 | Msa1009490:CDS | 40.0% | |
CTTGAGTGTGAAAGTCTTGA+AGG | + | chr7_1:10958641-10958660 | None:intergenic | 40.0% | |
! | GAATAATCGATGCTTTTGGG+TGG | + | chr7_1:10958678-10958697 | None:intergenic | 40.0% |
AATCAGTGACAAGAGATGGT+GGG | + | chr7_1:10958779-10958798 | None:intergenic | 40.0% | |
AAATCAGTGACAAGAGATGG+TGG | + | chr7_1:10958780-10958799 | None:intergenic | 40.0% | |
ACATTCTGATCATACGGTGA+AGG | + | chr7_1:10958858-10958877 | None:intergenic | 40.0% | |
TTCACCGTATGATCAGAATG+TGG | - | chr7_1:10958857-10958876 | Msa1009490:intron | 40.0% | |
TCACCGTATGATCAGAATGT+GGG | - | chr7_1:10958858-10958877 | Msa1009490:intron | 40.0% | |
ACACCCACATTCTGATCATA+CGG | + | chr7_1:10958864-10958883 | None:intergenic | 40.0% | |
CTGATATTAGCCGTAGTGAA+AGG | - | chr7_1:10958934-10958953 | Msa1009490:intron | 40.0% | |
GGTGGGAATAGAGATTCTTA+GGG | - | chr7_1:10959105-10959124 | Msa1009490:intron | 40.0% | |
GGAATAGAGATTCTTAGGGA+CGG | - | chr7_1:10959109-10959128 | Msa1009490:intron | 40.0% | |
ATTCTTAGGGACGGATATAG+AGG | - | chr7_1:10959118-10959137 | Msa1009490:intron | 40.0% | |
TTCTTAGGGACGGATATAGA+GGG | - | chr7_1:10959119-10959138 | Msa1009490:intron | 40.0% | |
AACACAGTATTTGTAGGGGT+GGG | + | chr7_1:10959163-10959182 | None:intergenic | 40.0% | |
TAACACAGTATTTGTAGGGG+TGG | + | chr7_1:10959164-10959183 | None:intergenic | 40.0% | |
AGAGCAGCAAGTTCAACTAT+TGG | - | chr7_1:10959715-10959734 | Msa1009490:CDS | 40.0% | |
ACTTAGAAGACAGCAACAAG+AGG | - | chr7_1:10959754-10959773 | Msa1009490:intron | 40.0% | |
!! | GTTGCAAGTGTTGGTGATTT+AGG | - | chr7_1:10960018-10960037 | Msa1009490:intron | 40.0% |
!! | CAAGTGTTGGTGATTTAGGT+CGG | - | chr7_1:10960022-10960041 | Msa1009490:intron | 40.0% |
TACAATAATCGCGAAACGGA+GGG | + | chr7_1:10960118-10960137 | None:intergenic | 40.0% | |
ATACAATAATCGCGAAACGG+AGG | + | chr7_1:10960119-10960138 | None:intergenic | 40.0% | |
TTCGGTTAATTCGAAACGGA+GGG | + | chr7_1:10960200-10960219 | None:intergenic | 40.0% | |
ATTCGGTTAATTCGAAACGG+AGG | + | chr7_1:10960201-10960220 | None:intergenic | 40.0% | |
GCTCAATTATCATAGGACAG+AGG | - | chr7_1:10960461-10960480 | Msa1009490:CDS | 40.0% | |
ACTTCGAAAACAGCAACAAG+AGG | - | chr7_1:10960577-10960596 | Msa1009490:intron | 40.0% | |
GTCAATGTGAATGCAGTTAC+GGG | - | chr7_1:10960811-10960830 | Msa1009490:CDS | 40.0% | |
! | ATGGTGGGGTCATTGAACTA+GGG | + | chr7_1:10958764-10958783 | None:intergenic | 45.0% |
ATCAGTGACAAGAGATGGTG+GGG | + | chr7_1:10958778-10958797 | None:intergenic | 45.0% | |
ATCTCTATTCCCACCCACAT+AGG | + | chr7_1:10959100-10959119 | None:intergenic | 45.0% | |
GGGTGGGAATAGAGATTCTT+AGG | - | chr7_1:10959104-10959123 | Msa1009490:intron | 45.0% | |
TCTTAGGGACGGATATAGAG+GGG | - | chr7_1:10959120-10959139 | Msa1009490:intron | 45.0% | |
ACACAGTATTTGTAGGGGTG+GGG | + | chr7_1:10959162-10959181 | None:intergenic | 45.0% | |
GCAGCAAGTTCAACTATTGG+AGG | - | chr7_1:10959718-10959737 | Msa1009490:CDS | 45.0% | |
GCAGAAAGTTCAGCTATTGC+AGG | - | chr7_1:10960541-10960560 | Msa1009490:CDS | 45.0% | |
! | ATGGTGGGGTCATTGAACTA+GGG | + | chr7_1:10958764-10958783 | None:intergenic | 45.0% |
ATCAGTGACAAGAGATGGTG+GGG | + | chr7_1:10958778-10958797 | None:intergenic | 45.0% | |
ATCTCTATTCCCACCCACAT+AGG | + | chr7_1:10959100-10959119 | None:intergenic | 45.0% | |
GGGTGGGAATAGAGATTCTT+AGG | - | chr7_1:10959104-10959123 | Msa1009490:intron | 45.0% | |
TCTTAGGGACGGATATAGAG+GGG | - | chr7_1:10959120-10959139 | Msa1009490:intron | 45.0% | |
ACACAGTATTTGTAGGGGTG+GGG | + | chr7_1:10959162-10959181 | None:intergenic | 45.0% | |
GCAGCAAGTTCAACTATTGG+AGG | - | chr7_1:10959718-10959737 | Msa1009490:CDS | 45.0% | |
GCAGAAAGTTCAGCTATTGC+AGG | - | chr7_1:10960541-10960560 | Msa1009490:CDS | 45.0% | |
!! | TTATTTAGAAATATATTAAA+CGG | + | chr7_1:10959496-10959515 | None:intergenic | 5.0% |
!! | TTATTTAGAAATATATTAAA+CGG | + | chr7_1:10959496-10959515 | None:intergenic | 5.0% |
! | TTTGGGTGGGTCTGAAGTGA+GGG | + | chr7_1:10958664-10958683 | None:intergenic | 50.0% |
!! | TTTTGGGTGGGTCTGAAGTG+AGG | + | chr7_1:10958665-10958684 | None:intergenic | 50.0% |
!! | GATGGTGGGGTCATTGAACT+AGG | + | chr7_1:10958765-10958784 | None:intergenic | 50.0% |
ACGCTCGCAGAAACCCTTAT+TGG | + | chr7_1:10958831-10958850 | None:intergenic | 50.0% | |
GCGTTCACGAGCTAGAAAAC+AGG | - | chr7_1:10958995-10959014 | Msa1009490:intron | 50.0% | |
ACCCACATAGGCATGGCAAT+GGG | + | chr7_1:10959088-10959107 | None:intergenic | 50.0% | |
ATTGCCATGCCTATGTGGGT+GGG | - | chr7_1:10959088-10959107 | Msa1009490:intron | 50.0% | |
TATTCCCACCCACATAGGCA+TGG | + | chr7_1:10959095-10959114 | None:intergenic | 50.0% | |
CTTAGGGACGGATATAGAGG+GGG | - | chr7_1:10959121-10959140 | Msa1009490:intron | 50.0% | |
ACAGTATTTGTAGGGGTGGG+GGG | + | chr7_1:10959160-10959179 | None:intergenic | 50.0% | |
CACAGTATTTGTAGGGGTGG+GGG | + | chr7_1:10959161-10959180 | None:intergenic | 50.0% | |
! | TTACGGGAAGCAGAAAGCGT+TGG | - | chr7_1:10960827-10960846 | Msa1009490:CDS | 50.0% |
! | TTTGGGTGGGTCTGAAGTGA+GGG | + | chr7_1:10958664-10958683 | None:intergenic | 50.0% |
!! | TTTTGGGTGGGTCTGAAGTG+AGG | + | chr7_1:10958665-10958684 | None:intergenic | 50.0% |
!! | GATGGTGGGGTCATTGAACT+AGG | + | chr7_1:10958765-10958784 | None:intergenic | 50.0% |
ACGCTCGCAGAAACCCTTAT+TGG | + | chr7_1:10958831-10958850 | None:intergenic | 50.0% | |
GCGTTCACGAGCTAGAAAAC+AGG | - | chr7_1:10958995-10959014 | Msa1009490:intron | 50.0% | |
ACCCACATAGGCATGGCAAT+GGG | + | chr7_1:10959088-10959107 | None:intergenic | 50.0% | |
ATTGCCATGCCTATGTGGGT+GGG | - | chr7_1:10959088-10959107 | Msa1009490:intron | 50.0% | |
TATTCCCACCCACATAGGCA+TGG | + | chr7_1:10959095-10959114 | None:intergenic | 50.0% | |
CTTAGGGACGGATATAGAGG+GGG | - | chr7_1:10959121-10959140 | Msa1009490:intron | 50.0% | |
ACAGTATTTGTAGGGGTGGG+GGG | + | chr7_1:10959160-10959179 | None:intergenic | 50.0% | |
CACAGTATTTGTAGGGGTGG+GGG | + | chr7_1:10959161-10959180 | None:intergenic | 50.0% | |
! | TTACGGGAAGCAGAAAGCGT+TGG | - | chr7_1:10960827-10960846 | Msa1009490:CDS | 50.0% |
GCGGGGTGAGGAAGGATATA+AGG | + | chr7_1:10959065-10959084 | None:intergenic | 55.0% | |
ACATAGGCATGGCAATGGGG+CGG | + | chr7_1:10959084-10959103 | None:intergenic | 55.0% | |
CCCACATAGGCATGGCAATG+GGG | + | chr7_1:10959087-10959106 | None:intergenic | 55.0% | |
CCCCATTGCCATGCCTATGT+GGG | - | chr7_1:10959084-10959103 | Msa1009490:intron | 55.0% | |
CACCCACATAGGCATGGCAA+TGG | + | chr7_1:10959089-10959108 | None:intergenic | 55.0% | |
CATTGCCATGCCTATGTGGG+TGG | - | chr7_1:10959087-10959106 | Msa1009490:intron | 55.0% | |
GCGGGGTGAGGAAGGATATA+AGG | + | chr7_1:10959065-10959084 | None:intergenic | 55.0% | |
ACATAGGCATGGCAATGGGG+CGG | + | chr7_1:10959084-10959103 | None:intergenic | 55.0% | |
CCCACATAGGCATGGCAATG+GGG | + | chr7_1:10959087-10959106 | None:intergenic | 55.0% | |
CCCCATTGCCATGCCTATGT+GGG | - | chr7_1:10959084-10959103 | Msa1009490:intron | 55.0% | |
CACCCACATAGGCATGGCAA+TGG | + | chr7_1:10959089-10959108 | None:intergenic | 55.0% | |
CATTGCCATGCCTATGTGGG+TGG | - | chr7_1:10959087-10959106 | Msa1009490:intron | 55.0% | |
ATAGGCATGGCAATGGGGCG+GGG | + | chr7_1:10959082-10959101 | None:intergenic | 60.0% | |
CATAGGCATGGCAATGGGGC+GGG | + | chr7_1:10959083-10959102 | None:intergenic | 60.0% | |
GCCCCATTGCCATGCCTATG+TGG | - | chr7_1:10959083-10959102 | Msa1009490:intron | 60.0% | |
TATTTGTAGGGGTGGGGGGC+TGG | + | chr7_1:10959156-10959175 | None:intergenic | 60.0% | |
ATAGGCATGGCAATGGGGCG+GGG | + | chr7_1:10959082-10959101 | None:intergenic | 60.0% | |
CATAGGCATGGCAATGGGGC+GGG | + | chr7_1:10959083-10959102 | None:intergenic | 60.0% | |
GCCCCATTGCCATGCCTATG+TGG | - | chr7_1:10959083-10959102 | Msa1009490:intron | 60.0% | |
TATTTGTAGGGGTGGGGGGC+TGG | + | chr7_1:10959156-10959175 | None:intergenic | 60.0% | |
GCAATGGGGCGGGGTGAGGA+AGG | + | chr7_1:10959073-10959092 | None:intergenic | 70.0% | |
CATGGCAATGGGGCGGGGTG+AGG | + | chr7_1:10959077-10959096 | None:intergenic | 70.0% | |
GCAATGGGGCGGGGTGAGGA+AGG | + | chr7_1:10959073-10959092 | None:intergenic | 70.0% | |
CATGGCAATGGGGCGGGGTG+AGG | + | chr7_1:10959077-10959096 | None:intergenic | 70.0% | |
!!! | AGGGGTGGGGGGCTGGTCGC+TGG | + | chr7_1:10959149-10959168 | None:intergenic | 80.0% |
!!! | AGGGGTGGGGGGCTGGTCGC+TGG | + | chr7_1:10959149-10959168 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 10958603 | 10960865 | 10958603 | ID=Msa1009490;Name=Msa1009490 |
chr7_1 | mRNA | 10958603 | 10960865 | 10958603 | ID=Msa1009490-mRNA-1;Parent=Msa1009490;Name=Msa1009490-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.75|0.33|0.5|4|0|173 |
chr7_1 | exon | 10960620 | 10960865 | 10960620 | ID=Msa1009490-mRNA-1:exon:2943;Parent=Msa1009490-mRNA-1 |
chr7_1 | exon | 10960437 | 10960595 | 10960437 | ID=Msa1009490-mRNA-1:exon:2942;Parent=Msa1009490-mRNA-1 |
chr7_1 | exon | 10959693 | 10959770 | 10959693 | ID=Msa1009490-mRNA-1:exon:2941;Parent=Msa1009490-mRNA-1 |
chr7_1 | exon | 10958603 | 10958641 | 10958603 | ID=Msa1009490-mRNA-1:exon:2940;Parent=Msa1009490-mRNA-1 |
chr7_1 | CDS | 10960620 | 10960865 | 10960620 | ID=Msa1009490-mRNA-1:cds;Parent=Msa1009490-mRNA-1 |
chr7_1 | CDS | 10960437 | 10960595 | 10960437 | ID=Msa1009490-mRNA-1:cds;Parent=Msa1009490-mRNA-1 |
chr7_1 | CDS | 10959693 | 10959770 | 10959693 | ID=Msa1009490-mRNA-1:cds;Parent=Msa1009490-mRNA-1 |
chr7_1 | CDS | 10958603 | 10958641 | 10958603 | ID=Msa1009490-mRNA-1:cds;Parent=Msa1009490-mRNA-1 |
Gene Sequence |
Protein sequence |