AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1009550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009550 MtrunA17_Chr7g0220111 97.590 249 6 0 1 249 1 249 0.0 501
Msa1009550 MtrunA17_Chr6g0455511 88.095 252 25 4 1 249 1 250 1.52e-162 449
Msa1009550 MtrunA17_Chr3g0122251 64.173 254 76 5 1 248 1 245 2.26e-104 302
Msa1009550 MtrunA17_Chr5g0420091 62.844 218 77 3 1 217 1 215 7.12e-93 272
Msa1009550 MtrunA17_Chr4g0061671 64.607 178 62 1 1 178 1 177 6.66e-77 230
Msa1009550 MtrunA17_Chr8g0351051 48.438 256 120 7 1 249 1 251 5.19e-69 213
Msa1009550 MtrunA17_Chr4g0061691 58.580 169 69 1 1 168 1 169 7.54e-59 186
Msa1009550 MtrunA17_Chr8g0366231 47.534 223 106 5 1 221 1 214 6.55e-56 179
Msa1009550 MtrunA17_Chr8g0377551 53.968 189 74 5 63 248 1 179 2.07e-54 173
Msa1009550 MtrunA17_Chr6g0474371 51.445 173 82 1 1 171 1 173 2.11e-53 171
Msa1009550 MtrunA17_Chr5g0420081 42.986 221 118 2 1 220 1 214 1.45e-49 162
Msa1009550 MtrunA17_Chr7g0220121 38.372 258 143 5 1 249 1 251 2.54e-49 162
Msa1009550 MtrunA17_Chr1g0204111 48.555 173 86 2 1 171 17 188 7.59e-49 161
Msa1009550 MtrunA17_Chr8g0380021 41.935 217 123 3 1 215 17 232 9.00e-48 158
Msa1009550 MtrunA17_Chr4g0057151 50.000 168 82 2 1 167 1 167 6.49e-47 155
Msa1009550 MtrunA17_Chr3g0077501 48.023 177 86 4 1 174 1 174 3.12e-46 154
Msa1009550 MtrunA17_Chr3g0097101 42.793 222 116 5 1 219 16 229 1.44e-45 152
Msa1009550 MtrunA17_Chr2g0284911 45.652 184 97 3 1 183 16 197 1.56e-45 153
Msa1009550 MtrunA17_Chr8g0351031 43.269 208 105 4 1 201 1 202 7.98e-45 150
Msa1009550 MtrunA17_Chr7g0246431 49.112 169 84 2 1 168 1 168 2.44e-43 145
Msa1009550 MtrunA17_Chr2g0279821 43.258 178 100 1 1 178 1 177 5.45e-42 143
Msa1009550 MtrunA17_Chr8g0351041 46.707 167 76 4 1 160 1 161 4.21e-40 136
Msa1009550 MtrunA17_Chr5g0411691 42.135 178 101 2 1 178 1 176 5.06e-39 135
Msa1009550 MtrunA17_Chr4g0049541 41.573 178 103 1 1 178 1 177 8.21e-39 134
Msa1009550 MtrunA17_Chr4g0018421 44.379 169 92 2 1 167 1 169 1.13e-38 133
Msa1009550 MtrunA17_Chr8g0377561 96.721 61 2 0 1 61 1 61 4.11e-36 123
Msa1009550 MtrunA17_Chr1g0164791 40.805 174 96 3 1 168 1 173 3.54e-35 125
Msa1009550 MtrunA17_Chr5g0427401 38.356 219 121 6 1 215 1 209 8.88e-35 124
Msa1009550 MtrunA17_Chr4g0020221 44.944 178 92 3 1 174 1 176 2.84e-33 121
Msa1009550 MtrunA17_Chr3g0125241 44.521 146 76 2 1 145 26 167 2.91e-33 119
Msa1009550 MtrunA17_Chr7g0246381 80.882 68 13 0 1 68 1 68 3.09e-33 115
Msa1009550 MtrunA17_Chr5g0412271 41.279 172 91 3 1 167 1 167 1.64e-31 115
Msa1009550 MtrunA17_Chr5g0412461 41.860 172 90 3 1 167 1 167 1.70e-31 115
Msa1009550 MtrunA17_Chr2g0308251 66.667 75 25 0 1 75 1 75 1.51e-29 106
Msa1009550 MtrunA17_Chr3g0142191 42.405 158 85 3 1 157 1 153 2.58e-29 110
Msa1009550 MtrunA17_Chr1g0159661 39.080 174 97 3 1 173 1 166 4.06e-29 108
Msa1009550 MtrunA17_Chr5g0404951 38.674 181 96 5 1 173 1 174 4.68e-28 107
Msa1009550 MtrunA17_Chr4g0049901 38.542 192 107 6 1 186 27 213 5.06e-27 104
Msa1009550 MtrunA17_Chr1g0173161 78.333 60 13 0 1 60 1 60 1.98e-26 98.2
Msa1009550 MtrunA17_Chr5g0427921 65.000 60 21 0 1 60 1 60 9.83e-22 85.5
Msa1009550 MtrunA17_Chr2g0308271 33.505 194 113 4 57 249 28 206 3.18e-21 88.2
Msa1009550 MtrunA17_Chr4g0044071 64.912 57 20 0 1 57 1 57 3.93e-21 85.5
Msa1009550 MtrunA17_Chr3g0134451 57.143 70 30 0 1 70 1 70 1.19e-20 89.0
Msa1009550 MtrunA17_Chr5g0425191 66.667 57 19 0 1 57 1 57 1.29e-20 84.0
Msa1009550 MtrunA17_Chr1g0166611 80.000 45 9 0 16 60 20 64 7.87e-19 80.1
Msa1009550 MtrunA17_Chr2g0292791 52.174 69 32 1 2 70 9 76 2.37e-17 78.6
Msa1009550 MtrunA17_Chr2g0325971 49.275 69 34 1 2 70 9 76 8.57e-17 77.0
Msa1009550 MtrunA17_Chr1g0208561 50.704 71 32 2 2 70 7 76 8.92e-17 76.6
Msa1009550 MtrunA17_Chr3g0089141 50.704 71 32 2 2 70 7 76 1.07e-16 76.6
Msa1009550 MtrunA17_Chr1g0208581 49.275 69 34 1 2 70 9 76 1.40e-16 76.3
Msa1009550 MtrunA17_Chr3g0099421 52.174 69 32 1 2 70 34 101 2.27e-16 76.3
Msa1009550 MtrunA17_Chr8g0379021 36.364 143 70 6 2 127 12 150 3.11e-16 74.3
Msa1009550 MtrunA17_Chr3g0099411 49.275 69 34 1 2 70 9 76 8.21e-16 73.9
Msa1009550 MtrunA17_Chr8g0355091 49.275 69 34 1 2 70 9 76 9.34e-16 74.3
Msa1009550 MtrunA17_Chr5g0419601 51.429 70 33 1 1 70 8 76 1.03e-15 73.9
Msa1009550 MtrunA17_Chr1g0206701 49.275 69 34 1 2 70 9 76 1.14e-15 73.9
Msa1009550 MtrunA17_Chr8g0357771 31.609 174 102 4 1 167 1 164 1.31e-15 72.8
Msa1009550 MtrunA17_Chr1g0206721 49.275 69 34 1 2 70 9 76 1.33e-15 73.9
Msa1009550 MtrunA17_Chr2g0333981 34.043 141 78 4 1 127 11 150 2.65e-15 71.6
Msa1009550 MtrunA17_Chr2g0317451 50.725 69 33 1 2 70 9 76 2.97e-15 72.8
Msa1009550 MtrunA17_Chr2g0317481 50.725 69 33 1 2 70 9 76 3.16e-15 72.8
Msa1009550 MtrunA17_Chr1g0149391 50.725 69 33 1 2 70 9 76 3.22e-15 72.8
Msa1009550 MtrunA17_Chr1g0187361 47.826 69 35 1 2 70 9 76 4.06e-15 72.4
Msa1009550 MtrunA17_Chr8g0376821 52.632 57 27 0 1 57 1 57 5.40e-15 70.9
Msa1009550 MtrunA17_Chr5g0417661 54.717 53 24 0 1 53 56 108 1.13e-14 68.9
Msa1009550 MtrunA17_Chr1g0169761 52.632 57 27 0 1 57 1 57 1.84e-14 69.3
Msa1009550 MtrunA17_Chr1g0188671 47.826 69 35 1 2 70 47 114 2.11e-14 70.9
Msa1009550 MtrunA17_Chr4g0052061 47.541 61 32 0 1 61 1 61 2.44e-14 68.6
Msa1009550 MtrunA17_Chr1g0206991 46.377 69 36 1 2 70 9 76 2.72e-14 68.9
Msa1009550 MtrunA17_Chr5g0422941 49.275 69 34 1 2 70 9 76 2.75e-14 70.1
Msa1009550 MtrunA17_Chr1g0175611 50.877 57 28 0 1 57 1 57 4.23e-14 68.2
Msa1009550 MtrunA17_Chr5g0422421 49.275 69 34 1 2 70 9 76 5.80e-14 69.3
Msa1009550 MtrunA17_Chr1g0180591 49.123 57 29 0 1 57 1 57 7.55e-14 67.8
Msa1009550 MtrunA17_Chr4g0074101 49.123 57 29 0 1 57 1 57 9.35e-14 67.8
Msa1009550 MtrunA17_Chr1g0175601 50.877 57 28 0 1 57 1 57 1.71e-13 67.0
Msa1009550 MtrunA17_Chr2g0300441 46.479 71 35 2 2 70 7 76 3.36e-13 67.0
Msa1009550 MtrunA17_Chr4g0060841 50.943 53 26 0 1 53 1 53 6.26e-13 67.4
Msa1009550 MtrunA17_Chr2g0300421 51.724 58 26 1 2 57 7 64 6.50e-13 65.1
Msa1009550 MtrunA17_Chr4g0018951 36.232 138 77 6 16 147 26 158 8.11e-13 64.7
Msa1009550 MtrunA17_Chr3g0089151 43.478 69 38 1 2 70 9 76 9.14e-13 63.5
Msa1009550 MtrunA17_Chr4g0052081 45.763 59 32 0 1 59 1 59 1.05e-12 64.7
Msa1009550 MtrunA17_Chr3g0119901 41.429 70 40 1 1 70 8 76 1.62e-12 64.7
Msa1009550 MtrunA17_Chr8g0356071 44.262 61 34 0 1 61 1 61 3.50e-12 62.8
Msa1009550 MtrunA17_Chr5g0427961 33.645 107 71 0 61 167 4 110 4.37e-12 62.8
Msa1009550 MtrunA17_Chr3g0085241 41.429 70 40 1 1 70 40 108 5.01e-12 63.9
Msa1009550 MtrunA17_Chr1g0206691 48.333 60 30 1 11 70 1 59 3.88e-11 61.2
Msa1009550 MtrunA17_Chr3g0111841 51.852 54 26 0 8 61 2 55 4.36e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009550 AT3G02310.1 73.622 254 58 7 1 249 1 250 1.31e-129 367
Msa1009550 AT5G15800.1 73.725 255 57 6 1 249 1 251 4.69e-122 348
Msa1009550 AT5G15800.2 71.863 263 59 7 1 249 1 262 1.07e-120 345
Msa1009550 AT3G02310.2 84.795 171 25 1 1 170 1 171 3.51e-102 295
Msa1009550 AT1G24260.1 61.508 252 84 3 1 248 1 243 3.42e-98 287
Msa1009550 AT1G24260.2 61.265 253 84 3 1 248 1 244 4.08e-98 287
Msa1009550 AT1G24260.3 59.524 252 76 4 1 248 1 230 5.11e-92 271
Msa1009550 AT2G03710.1 52.471 263 106 4 1 249 1 258 3.69e-86 257
Msa1009550 AT2G03710.2 52.471 263 105 5 1 249 1 257 2.21e-84 252
Msa1009550 AT2G03710.3 65.116 172 59 1 1 171 1 172 2.80e-75 227
Msa1009550 AT2G45650.1 49.804 255 119 6 1 249 1 252 3.47e-71 219
Msa1009550 AT1G69120.2 53.448 174 80 1 1 173 1 174 1.30e-58 186
Msa1009550 AT1G69120.1 53.448 174 80 1 1 173 1 174 8.02e-58 184
Msa1009550 AT1G26310.1 54.545 176 77 1 1 173 1 176 7.33e-57 182
Msa1009550 AT5G60910.1 43.200 250 126 5 1 249 1 235 1.21e-54 176
Msa1009550 AT3G61120.1 52.601 173 80 2 1 173 1 171 1.98e-52 170
Msa1009550 AT4G09960.6 44.503 191 102 3 1 189 2 190 1.12e-49 163
Msa1009550 AT4G09960.1 44.503 191 102 3 1 189 1 189 1.13e-49 163
Msa1009550 AT4G09960.5 44.503 191 102 3 1 189 11 199 1.90e-49 162
Msa1009550 AT4G09960.3 44.503 191 102 3 1 189 27 215 5.07e-49 162
Msa1009550 AT2G45660.1 50.000 172 82 3 1 170 1 170 4.18e-47 156
Msa1009550 AT4G09960.2 44.103 195 93 6 1 183 1 191 7.36e-47 155
Msa1009550 AT4G09960.4 49.367 158 76 3 1 156 96 251 2.49e-46 157
Msa1009550 AT3G30260.1 51.948 154 69 2 1 151 1 152 3.54e-46 154
Msa1009550 AT3G58780.1 42.927 205 113 3 1 203 16 218 1.73e-45 153
Msa1009550 AT3G58780.5 42.927 205 113 3 1 203 22 224 2.00e-45 153
Msa1009550 AT2G45660.2 50.633 158 74 3 1 156 1 156 4.16e-45 149
Msa1009550 AT4G18960.1 45.745 188 97 4 2 187 18 202 6.17e-45 151
Msa1009550 AT2G42830.1 47.429 175 88 3 1 173 16 188 1.60e-44 150
Msa1009550 AT4G11880.2 51.282 156 76 0 1 156 1 156 2.05e-43 145
Msa1009550 AT4G11880.3 51.282 156 76 0 1 156 1 156 2.05e-43 145
Msa1009550 AT2G42830.2 48.734 158 77 3 1 156 16 171 3.12e-43 147
Msa1009550 AT3G58780.2 41.951 205 108 3 1 203 16 211 4.01e-43 146
Msa1009550 AT4G22950.2 47.093 172 90 1 1 172 1 171 8.34e-43 143
Msa1009550 AT4G37940.1 42.697 178 101 1 1 178 1 177 2.28e-42 144
Msa1009550 AT4G11880.4 50.000 172 86 0 1 172 1 172 3.87e-42 143
Msa1009550 AT4G11880.1 50.000 172 86 0 1 172 1 172 3.87e-42 143
Msa1009550 AT4G22950.3 47.904 167 86 1 1 167 1 166 5.50e-42 143
Msa1009550 AT4G22950.1 47.904 167 86 1 1 167 1 166 5.50e-42 143
Msa1009550 AT3G58780.4 51.007 149 69 3 1 147 16 162 1.11e-41 144
Msa1009550 AT3G58780.3 38.428 229 114 3 1 203 16 243 2.13e-41 143
Msa1009550 AT3G57230.1 42.135 178 102 1 1 178 1 177 5.01e-41 141
Msa1009550 AT3G57230.4 42.135 178 102 1 1 178 1 177 5.01e-41 141
Msa1009550 AT5G62165.3 45.109 184 95 3 1 183 1 179 4.19e-40 137
Msa1009550 AT5G62165.1 45.109 184 95 3 1 183 1 179 4.19e-40 137
Msa1009550 AT5G62165.2 45.109 184 95 3 1 183 1 179 4.19e-40 137
Msa1009550 AT3G57230.2 48.252 143 73 1 1 143 1 142 3.73e-39 133
Msa1009550 AT2G22630.1 40.449 178 105 1 1 178 1 177 2.43e-38 134
Msa1009550 AT2G22630.2 40.449 178 105 1 1 178 1 177 2.43e-38 134
Msa1009550 AT5G51870.1 41.146 192 107 3 1 190 1 188 2.46e-38 133
Msa1009550 AT4G37940.4 44.872 156 85 1 1 156 1 155 7.04e-38 132
Msa1009550 AT2G14210.1 44.311 167 93 0 1 167 1 167 8.80e-38 132
Msa1009550 AT2G14210.2 44.311 167 93 0 1 167 1 167 1.25e-37 132
Msa1009550 AT5G51870.4 40.594 202 114 3 1 200 1 198 1.98e-37 131
Msa1009550 AT5G62165.17 46.497 157 82 2 1 156 1 156 2.67e-37 129
Msa1009550 AT5G62165.12 46.497 157 82 2 1 156 1 156 2.67e-37 129
Msa1009550 AT5G62165.11 46.497 157 82 2 1 156 1 156 2.67e-37 129
Msa1009550 AT5G13790.2 41.629 221 121 4 1 217 1 217 2.71e-37 132
Msa1009550 AT5G51870.3 40.594 202 114 3 1 200 11 208 2.82e-37 131
Msa1009550 AT5G23260.2 39.336 211 116 4 1 210 1 200 3.29e-37 131
Msa1009550 AT5G23260.4 39.336 211 116 4 1 210 17 216 4.88e-37 131
Msa1009550 AT4G37940.3 47.183 142 74 1 1 142 1 141 5.40e-37 129
Msa1009550 AT5G13790.1 41.176 221 119 3 1 217 1 214 6.57e-37 131
Msa1009550 AT5G62165.6 46.259 147 77 2 1 146 1 146 4.17e-35 123
Msa1009550 AT5G62165.9 46.259 147 77 2 1 146 1 146 4.17e-35 123
Msa1009550 AT5G62165.7 46.259 147 77 2 1 146 1 146 4.17e-35 123
Msa1009550 AT5G62165.8 46.259 147 77 2 1 146 1 146 4.17e-35 123
Msa1009550 AT5G62165.13 46.259 147 77 2 1 146 1 146 4.17e-35 123
Msa1009550 AT5G62165.10 45.223 157 84 2 1 156 1 156 4.44e-35 124
Msa1009550 AT5G62165.4 45.223 157 84 2 1 156 1 156 4.44e-35 124
Msa1009550 AT5G51860.2 41.143 175 100 2 1 173 1 174 1.23e-34 123
Msa1009550 AT1G71692.1 40.761 184 101 1 1 176 1 184 1.32e-34 124
Msa1009550 AT3G57390.3 43.333 180 93 2 1 172 1 179 2.06e-34 124
Msa1009550 AT5G51860.1 38.342 193 110 3 1 191 1 186 2.88e-34 122
Msa1009550 AT5G65050.2 42.262 168 90 2 1 168 1 161 4.49e-34 121
Msa1009550 AT5G23260.1 38.863 211 112 5 1 210 17 211 5.26e-34 123
Msa1009550 AT3G57390.1 43.333 180 93 2 1 172 1 179 5.69e-34 123
Msa1009550 AT2G22540.3 39.881 168 99 2 1 167 1 167 6.64e-34 122
Msa1009550 AT2G22540.1 39.881 168 99 2 1 167 1 167 6.64e-34 122
Msa1009550 AT5G20240.1 40.230 174 95 3 1 173 1 166 1.27e-33 121
Msa1009550 AT5G65050.3 42.262 168 90 2 1 168 1 161 1.41e-33 120
Msa1009550 AT5G10140.4 41.860 172 89 3 1 168 1 165 1.48e-33 120
Msa1009550 AT5G51870.2 45.205 146 77 2 1 144 1 145 2.56e-33 119
Msa1009550 AT5G65050.5 41.071 168 81 2 1 168 1 150 2.89e-33 119
Msa1009550 AT5G65060.3 39.683 189 100 4 1 182 1 182 4.55e-33 119
Msa1009550 AT5G51870.5 45.205 146 77 2 1 144 24 168 1.12e-32 118
Msa1009550 AT5G65060.1 41.071 168 92 3 1 168 1 161 1.50e-32 118
Msa1009550 AT5G10140.2 44.898 147 74 2 1 147 1 140 1.82e-32 117
Msa1009550 AT5G10140.1 44.898 147 74 2 1 147 1 140 1.83e-32 117
Msa1009550 AT5G10140.3 44.898 147 74 2 1 147 1 140 2.69e-32 117
Msa1009550 AT5G65050.1 40.698 172 91 3 1 168 1 165 6.13e-32 115
Msa1009550 AT5G65060.2 39.881 168 83 3 1 168 1 150 1.18e-31 115
Msa1009550 AT5G20240.2 45.714 140 71 2 1 139 1 136 1.95e-31 113
Msa1009550 AT5G23260.3 42.857 147 81 2 1 146 1 145 2.61e-31 115
Msa1009550 AT4G24540.1 41.573 178 96 3 1 174 1 174 4.58e-31 114
Msa1009550 AT5G65070.1 40.526 190 99 4 1 188 1 178 5.45e-31 114
Msa1009550 AT5G62165.14 70.833 72 20 1 1 72 1 71 4.27e-30 108
Msa1009550 AT5G65080.3 41.401 157 83 3 1 156 8 156 5.08e-29 108
Msa1009550 AT2G22540.2 36.905 168 99 2 1 167 1 162 1.02e-28 109
Msa1009550 AT3G54340.1 37.037 189 114 2 1 188 1 185 7.91e-28 106
Msa1009550 AT5G65070.2 36.279 215 104 5 1 188 1 209 1.23e-27 106
Msa1009550 AT1G31140.1 41.497 147 85 1 1 146 1 147 1.73e-27 105
Msa1009550 AT1G31140.2 42.949 156 72 3 1 146 1 149 2.36e-27 105
Msa1009550 AT1G77080.5 37.989 179 104 2 1 179 1 172 5.77e-26 100
Msa1009550 AT5G65070.4 42.282 149 75 3 1 147 1 140 2.75e-25 97.8
Msa1009550 AT5G65080.2 39.355 155 86 2 1 155 8 154 2.94e-25 99.4
Msa1009550 AT1G77080.11 38.690 168 96 2 1 168 1 161 3.18e-25 98.6
Msa1009550 AT1G77080.4 38.690 168 96 2 1 168 1 161 5.72e-25 98.2
Msa1009550 AT5G65070.3 35.586 222 97 6 1 188 1 210 2.15e-24 97.8
Msa1009550 AT5G65070.5 36.413 184 85 5 1 156 1 180 5.90e-24 95.9
Msa1009550 AT1G77080.8 34.375 192 98 3 1 168 1 188 3.37e-22 91.7
Msa1009550 AT1G77080.2 36.905 168 95 3 1 168 1 157 6.72e-21 87.4
Msa1009550 AT1G77980.1 54.054 74 34 0 1 74 1 74 1.01e-20 89.7
Msa1009550 AT1G22130.1 55.714 70 31 0 1 70 1 70 1.46e-20 89.4
Msa1009550 AT1G69120.3 41.071 112 65 1 63 173 1 112 4.63e-20 85.1
Msa1009550 AT1G77080.12 36.538 156 88 3 1 156 1 145 1.75e-18 79.7
Msa1009550 AT1G77950.3 52.857 70 33 0 1 70 1 70 4.40e-18 81.3
Msa1009550 AT1G77950.2 52.857 70 33 0 1 70 1 70 4.40e-18 81.3
Msa1009550 AT1G77950.1 52.857 70 33 0 1 70 1 70 4.40e-18 81.3
Msa1009550 AT1G77950.4 52.857 70 33 0 1 70 1 70 4.40e-18 81.3
Msa1009550 AT4G37435.1 59.649 57 23 0 1 57 1 57 9.17e-17 76.3
Msa1009550 AT1G01530.1 52.941 68 31 1 1 68 6 72 4.55e-16 75.5
Msa1009550 AT5G60910.2 31.915 188 112 5 63 249 1 173 9.17e-16 73.6
Msa1009550 AT2G03060.3 37.143 105 57 2 1 104 1 97 9.58e-16 76.3
Msa1009550 AT2G03060.7 37.143 105 57 2 1 104 1 97 9.58e-16 76.3
Msa1009550 AT2G03060.1 37.143 105 57 2 1 104 1 97 9.58e-16 76.3
Msa1009550 AT2G03060.2 37.143 105 57 2 1 104 1 97 1.19e-15 75.9
Msa1009550 AT1G65360.1 43.421 76 42 1 1 76 6 80 4.47e-15 72.4
Msa1009550 AT1G18750.4 52.632 57 27 0 1 57 1 57 1.26e-14 72.8
Msa1009550 AT1G18750.1 52.632 57 27 0 1 57 1 57 1.42e-14 72.8
Msa1009550 AT1G18750.3 52.632 57 27 0 1 57 1 57 1.98e-14 72.4
Msa1009550 AT4G36590.1 53.333 60 28 0 2 61 7 66 6.93e-14 69.7
Msa1009550 AT5G60440.1 46.377 69 36 1 2 70 7 74 7.92e-14 70.1
Msa1009550 AT1G69540.1 30.769 156 86 5 1 156 1 134 2.53e-13 68.9
Msa1009550 AT1G69540.2 30.769 156 86 5 1 156 1 134 3.02e-13 68.9
Msa1009550 AT1G72350.1 46.377 69 34 1 2 70 43 108 3.40e-13 67.4
Msa1009550 AT2G24840.1 45.714 70 37 1 1 70 62 130 5.64e-13 67.4
Msa1009550 AT3G04100.1 43.836 73 40 1 2 74 14 85 6.37e-13 66.2
Msa1009550 AT3G66656.1 47.368 57 30 0 1 57 1 57 6.86e-13 65.5
Msa1009550 AT2G34440.1 45.614 57 31 0 1 57 1 57 1.04e-12 65.1
Msa1009550 AT1G29962.1 50.000 60 30 0 2 61 8 67 1.26e-11 62.0
Msa1009550 AT1G47760.1 45.614 57 31 0 1 57 1 57 1.76e-11 61.6
Msa1009550 AT4G37940.2 31.897 116 79 0 63 178 1 116 2.52e-11 60.8
Msa1009550 AT1G28460.1 48.333 60 31 0 2 61 8 67 6.82e-11 60.1

Find 41 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTTTCAGTTCTGATTAT+AGG 0.166644 7_1:+11196881 Msa1009550:intron
TGATTGCCTGTAGTGATTTC+TGG 0.197665 7_1:-11196130 None:intergenic
AAACAGATCCTTGTCAATTA+AGG 0.281875 7_1:+11195351 Msa1009550:CDS
ATTGGCTGATCTTCAAAATA+AGG 0.303924 7_1:+11195226 Msa1009550:CDS
AATAGCTACCTCAAGTTCTT+TGG 0.310821 7_1:-11193822 None:intergenic
CAGCACCATAACTGCACTTC+TGG 0.351179 7_1:-11193781 None:intergenic
TGAGCAGCTTGAACGGCAAT+TGG 0.374852 7_1:+11194371 Msa1009550:CDS
GCAATCCTACATTGCAGATT+GGG 0.382564 7_1:+11196232 Msa1009550:CDS
CTTGGGGCCACTAAGTTCTA+AGG 0.401577 7_1:+11194344 Msa1009550:CDS
ACAATTCATGCTGGACCAAT+TGG 0.407437 7_1:+11195208 Msa1009550:CDS
CAAGTGAATGGATTTGTTCC+TGG 0.418508 7_1:+11196955 Msa1009550:CDS
TCAGAGCTTCTTCCAGCAGC+TGG 0.423930 7_1:+11196206 Msa1009550:CDS
ACATTTGCAAAGAGAAGAAA+TGG 0.428741 7_1:+11192006 Msa1009550:CDS
GCATGCTCAAAACTCTTGAT+AGG 0.431018 7_1:+11193756 Msa1009550:intron
TCAAGATCCTTAGAACTTAG+TGG 0.434757 7_1:-11194351 None:intergenic
TGCAATCCTACATTGCAGAT+TGG 0.436020 7_1:+11196231 Msa1009550:CDS
GAAATCACTACAGGCAATCA+TGG 0.441544 7_1:+11196133 Msa1009550:CDS
GAGGAAGAGTTGAGTTGAAG+AGG 0.453499 7_1:+11191956 Msa1009550:CDS
ATATTGCATGCTTTGATCAC+CGG 0.459468 7_1:-11196160 None:intergenic
GGTGATCAAAGCATGCAATA+TGG 0.460751 7_1:+11196162 Msa1009550:CDS
GTTTCAGCTTCAAGTATTCA+CGG 0.476057 7_1:-11194165 None:intergenic
AGGTACCAGAAGTGCAGTTA+TGG 0.477506 7_1:+11193776 Msa1009550:CDS
TTCTGTTCTTTGTGATGCTG+AGG 0.481866 7_1:+11192053 Msa1009550:CDS
GCTACCTCAAGTTCTTTGGC+AGG 0.490765 7_1:-11193818 None:intergenic
TAGGATTGCAATCCAGCTGC+TGG 0.491957 7_1:-11196218 None:intergenic
CAAGCTCAACAACAAGTGAA+TGG 0.495301 7_1:+11196943 Msa1009550:CDS
TATTACCCAATCTGCAATGT+AGG 0.507401 7_1:-11196237 None:intergenic
CTCAATTATAGCATCCATCC+AGG 0.520557 7_1:-11196973 None:intergenic
CTTATCATCTTCTCTACTCG+TGG 0.542095 7_1:+11192081 Msa1009550:CDS
TCAATTCCAGAAATCACTAC+AGG 0.554040 7_1:+11196124 Msa1009550:CDS
TACAGGCAATCATGGGAAGC+CGG 0.554692 7_1:+11196141 Msa1009550:CDS
AGGATCTTGAGCAGCTTGAA+CGG 0.572971 7_1:+11194364 Msa1009550:CDS
TTTGCAGACACAATTCATGC+TGG 0.573767 7_1:+11195199 Msa1009550:intron
TTTGTTACAGGAACATATGT+TGG 0.580851 7_1:+11195321 Msa1009550:intron
TGAATGGATTTGTTCCTGGA+TGG 0.588184 7_1:+11196959 Msa1009550:CDS
AAATCACTACAGGCAATCAT+GGG 0.592196 7_1:+11196134 Msa1009550:CDS
CAAACCTGCCAAAGAACTTG+AGG 0.622488 7_1:+11193814 Msa1009550:CDS
ATTCATCTCTGAAGCATGTG+AGG 0.631937 7_1:+11194394 Msa1009550:CDS
TGTGTTTACCTTAATTGACA+AGG 0.634588 7_1:-11195359 None:intergenic
GAAGCATGTGAGGTCAACAA+AGG 0.670052 7_1:+11194404 Msa1009550:CDS
AAAATCTTCAAAGAACACAG+AGG 0.732334 7_1:+11194197 Msa1009550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATTTATATACTTC+TGG + chr7_1:11192815-11192834 Msa1009550:intron 10.0%
!! AAATATGAAAATTTAATGTT+AGG - chr7_1:11194230-11194249 None:intergenic 10.0%
!! ATTTATAATTTATTAAACCA+AGG - chr7_1:11195916-11195935 None:intergenic 10.0%
!! AAAAATCAAATCAAAATTCA+TGG - chr7_1:11192374-11192393 None:intergenic 15.0%
!! TAAGATTTAAGAAAAAAACA+AGG - chr7_1:11192619-11192638 None:intergenic 15.0%
!! TATCTATTGCAAATATTATA+AGG + chr7_1:11193062-11193081 Msa1009550:intron 15.0%
!!! GATAACTTTTAGTAAAAATA+AGG + chr7_1:11193260-11193279 Msa1009550:intron 15.0%
!! AATATAATACATTACAATTG+TGG - chr7_1:11193480-11193499 None:intergenic 15.0%
!!! ATGTTCTATTATTTTTCATT+TGG + chr7_1:11194114-11194133 Msa1009550:intron 15.0%
!! CCATAAAATAATTCAAATTT+AGG - chr7_1:11194891-11194910 None:intergenic 15.0%
!!! CCTAAATTTGAATTATTTTA+TGG + chr7_1:11194888-11194907 Msa1009550:intron 15.0%
!! AATACAATCTTATTATGAAT+GGG - chr7_1:11194986-11195005 None:intergenic 15.0%
!!! TGATTTTCTCAAATTATTAA+TGG - chr7_1:11195743-11195762 None:intergenic 15.0%
!!! AAATAAAAGAAACTTTTAGA+TGG + chr7_1:11196014-11196033 Msa1009550:intron 15.0%
!! TAAGTATTCAAAATTAGAAA+TGG + chr7_1:11196329-11196348 Msa1009550:intron 15.0%
!! TTATTTATTTATTTGTCATC+CGG - chr7_1:11196583-11196602 None:intergenic 15.0%
!! TCAAAACATATATATAAAGA+TGG - chr7_1:11196851-11196870 None:intergenic 15.0%
!!! ACTGTCTTTGTTTTATTTTT+AGG + chr7_1:11192516-11192535 Msa1009550:intron 20.0%
!!! ATTAATTTCCATGTTTTCTT+TGG + chr7_1:11192664-11192683 Msa1009550:intron 20.0%
!!! AATTAAGTTGTTTATCTTTC+TGG + chr7_1:11192721-11192740 Msa1009550:intron 20.0%
!! TTAATAAATGCATTACTCTA+TGG - chr7_1:11192791-11192810 None:intergenic 20.0%
!!! AAAATTGTCTTTTGTTTATG+AGG + chr7_1:11192840-11192859 Msa1009550:intron 20.0%
!!! AAAAAAACATTTGTTTTCCA+TGG - chr7_1:11193124-11193143 None:intergenic 20.0%
!! AAAATAAGGAATATTGAAAC+TGG + chr7_1:11193274-11193293 Msa1009550:intron 20.0%
!! TTGAAGATTTATTCATTTGA+TGG + chr7_1:11193402-11193421 Msa1009550:intron 20.0%
!!! ATATCAGTGTTGATTATAAA+TGG - chr7_1:11193852-11193871 None:intergenic 20.0%
!!! TAAAATGAGTGTATTTTGTA+CGG - chr7_1:11193907-11193926 None:intergenic 20.0%
!!! CTAAAAGATTTCTGAAATAT+TGG - chr7_1:11194317-11194336 None:intergenic 20.0%
!!! CAATATTTCAGAAATCTTTT+AGG + chr7_1:11194315-11194334 Msa1009550:intron 20.0%
!! TAGAACTTTCTTAATTAACA+TGG + chr7_1:11194447-11194466 Msa1009550:intron 20.0%
!!! GAATTTCATTTTCTAATCAA+AGG - chr7_1:11194707-11194726 None:intergenic 20.0%
!!! GTATAACTTCAATTTTTCTT+AGG + chr7_1:11194850-11194869 Msa1009550:intron 20.0%
!! GAATACAATCTTATTATGAA+TGG - chr7_1:11194987-11195006 None:intergenic 20.0%
!! ATAAGAAAATGTAAATCAAG+TGG - chr7_1:11195092-11195111 None:intergenic 20.0%
!! TACATCACAATAATATTCAA+GGG - chr7_1:11195143-11195162 None:intergenic 20.0%
!!! AATTAATAAAGCATCTTCTT+TGG + chr7_1:11195273-11195292 Msa1009550:intron 20.0%
!!! ATTAATAAAGCATCTTCTTT+GGG + chr7_1:11195274-11195293 Msa1009550:intron 20.0%
!! TGTACAAGAAATATCTATTA+TGG + chr7_1:11195660-11195679 Msa1009550:intron 20.0%
!!! TTTTCTCAAATTATTAATGG+TGG - chr7_1:11195740-11195759 None:intergenic 20.0%
!! TAGTCAAATATATTATCAGA+AGG - chr7_1:11196081-11196100 None:intergenic 20.0%
!! AGAAATGGTTTATGAAATTT+AGG + chr7_1:11196344-11196363 Msa1009550:intron 20.0%
!! AAAACATATTGAAACAAACA+CGG + chr7_1:11196651-11196670 Msa1009550:intron 20.0%
!!! GAAAGCAATGTTTTAAAAAT+TGG - chr7_1:11196806-11196825 None:intergenic 20.0%
! AAATGTTTATGTCCTTTGTA+CGG + chr7_1:11192468-11192487 Msa1009550:intron 25.0%
!!! GTCTTTGTTTTATTTTTAGG+AGG + chr7_1:11192519-11192538 Msa1009550:intron 25.0%
! AAGCAATGTTTCAATGAAAA+AGG - chr7_1:11192566-11192585 None:intergenic 25.0%
! TTTATAAGTCTTTCAATCCA+TGG + chr7_1:11193104-11193123 Msa1009550:intron 25.0%
! TTTATTCATTTGATGGAAAC+TGG + chr7_1:11193409-11193428 Msa1009550:intron 25.0%
! TTATTCATTTGATGGAAACT+GGG + chr7_1:11193410-11193429 Msa1009550:intron 25.0%
! GCACAAGAATGTTATTAAAA+TGG + chr7_1:11193517-11193536 Msa1009550:intron 25.0%
! GTTATTAAAATGGCACAATA+TGG + chr7_1:11193527-11193546 Msa1009550:intron 25.0%
! ACGGTTAACAATTTAAGTAA+AGG + chr7_1:11193580-11193599 Msa1009550:intron 25.0%
! CGGTTAACAATTTAAGTAAA+GGG + chr7_1:11193581-11193600 Msa1009550:intron 25.0%
!!! TTTGACATTTTTTTTCTTCC+TGG + chr7_1:11193721-11193740 Msa1009550:intron 25.0%
! TTAACTAAATTTCGTGTAGT+CGG + chr7_1:11194807-11194826 Msa1009550:intron 25.0%
!! TCAATTTTTCTTAGGTCATT+TGG + chr7_1:11194858-11194877 Msa1009550:intron 25.0%
! ACATCACAATAATATTCAAG+GGG - chr7_1:11195142-11195161 None:intergenic 25.0%
! CTACATCACAATAATATTCA+AGG - chr7_1:11195144-11195163 None:intergenic 25.0%
!!! CTCATATTTGTTTTGAATTG+CGG + chr7_1:11195407-11195426 Msa1009550:intron 25.0%
!! CACATTTTCTTGCAATATAA+AGG - chr7_1:11195454-11195473 None:intergenic 25.0%
! CTTTATATTGCAAGAAAATG+TGG + chr7_1:11195452-11195471 Msa1009550:intron 25.0%
!! CTGCAACATTAAGTATTTTT+AGG - chr7_1:11195519-11195538 None:intergenic 25.0%
!!! TGACTATAATTTGTTTCAGT+TGG + chr7_1:11196095-11196114 Msa1009550:intron 25.0%
!!! AATACTTAAAAGTGTCCTAA+GGG - chr7_1:11196317-11196336 None:intergenic 25.0%
! ATAATCAGAACTGAAAGATA+GGG - chr7_1:11196881-11196900 None:intergenic 25.0%
! TATAATCAGAACTGAAAGAT+AGG - chr7_1:11196882-11196901 None:intergenic 25.0%
!! TATCTTTCAGTTCTGATTAT+AGG + chr7_1:11196881-11196900 Msa1009550:intron 25.0%
ACATTTGCAAAGAGAAGAAA+TGG + chr7_1:11192006-11192025 Msa1009550:CDS 30.0%
CAAGTACATGTAGATCTAAT+AGG - chr7_1:11192238-11192257 None:intergenic 30.0%
!!! TTAGGAGGTTTTTTGAGATT+AGG + chr7_1:11192534-11192553 Msa1009550:intron 30.0%
GGGCTATTAGATAATAGATA+GGG + chr7_1:11192883-11192902 Msa1009550:intron 30.0%
TCAGTGAATTCAAGAATTCA+AGG - chr7_1:11192995-11193014 None:intergenic 30.0%
TAAGGAATATTGAAACTGGT+TGG + chr7_1:11193278-11193297 Msa1009550:intron 30.0%
TTGACATCACTATGTAAACA+CGG + chr7_1:11193561-11193580 Msa1009550:intron 30.0%
GCATAGACAATTTACATTGA+AGG - chr7_1:11193670-11193689 None:intergenic 30.0%
TATTCCGAACACATTCTATA+CGG - chr7_1:11193978-11193997 None:intergenic 30.0%
AAAATCTTCAAAGAACACAG+AGG + chr7_1:11194197-11194216 Msa1009550:CDS 30.0%
!! AAATCTTTTAGGTGAAGACT+TGG + chr7_1:11194326-11194345 Msa1009550:CDS 30.0%
!! AATCTTTTAGGTGAAGACTT+GGG + chr7_1:11194327-11194346 Msa1009550:CDS 30.0%
AGTTGTAACACTATTACCTT+AGG + chr7_1:11194479-11194498 Msa1009550:intron 30.0%
! TCGTTCAATTTAGCATTGAA+TGG - chr7_1:11194524-11194543 None:intergenic 30.0%
TACAAAGATGACAGAATAAG+TGG - chr7_1:11194833-11194852 None:intergenic 30.0%
ACGAGATTCAAATCATGAAT+CGG - chr7_1:11195031-11195050 None:intergenic 30.0%
TTCATGATTTGAATCTCGTT+TGG + chr7_1:11195032-11195051 Msa1009550:intron 30.0%
!! TATTTTGAAGATCAGCCAAT+TGG - chr7_1:11195226-11195245 None:intergenic 30.0%
ATTGGCTGATCTTCAAAATA+AGG + chr7_1:11195226-11195245 Msa1009550:CDS 30.0%
GATCTTCAAAATAAGGTACA+TGG + chr7_1:11195233-11195252 Msa1009550:intron 30.0%
!! TGAAGCTATTGTTTTGTTAC+AGG + chr7_1:11195309-11195328 Msa1009550:intron 30.0%
TTTGTTACAGGAACATATGT+TGG + chr7_1:11195321-11195340 Msa1009550:intron 30.0%
AAACAGATCCTTGTCAATTA+AGG + chr7_1:11195351-11195370 Msa1009550:CDS 30.0%
TGTGTTTACCTTAATTGACA+AGG - chr7_1:11195362-11195381 None:intergenic 30.0%
GAGATGAATATCATGTATAC+TGG - chr7_1:11195390-11195409 None:intergenic 30.0%
TAAAACAATTGTTCTTCCCA+TGG + chr7_1:11195586-11195605 Msa1009550:intron 30.0%
TTGTTGCATTCTTCTATATC+TGG + chr7_1:11195626-11195645 Msa1009550:intron 30.0%
!!! ATGGTTTTAAATAGCACTTG+CGG + chr7_1:11195679-11195698 Msa1009550:intron 30.0%
! TACAGACCACGATTTAAAAT+TGG + chr7_1:11195884-11195903 Msa1009550:intron 30.0%
! CTAAGTCCAATTTTAAATCG+TGG - chr7_1:11195893-11195912 None:intergenic 30.0%
! TTTAAAATTGGACTTAGCCT+TGG + chr7_1:11195896-11195915 Msa1009550:intron 30.0%
!! CTATAATTTGTTTCAGTTGG+AGG + chr7_1:11196098-11196117 Msa1009550:intron 30.0%
ACCTCTTGCGTAATAATTTA+TGG + chr7_1:11196275-11196294 Msa1009550:intron 30.0%
CCTCTTGCGTAATAATTTAT+GGG + chr7_1:11196276-11196295 Msa1009550:intron 30.0%
!! GAATACTTAAAAGTGTCCTA+AGG - chr7_1:11196318-11196337 None:intergenic 30.0%
TGATTTAACCAAAGTTGAAC+CGG + chr7_1:11196561-11196580 Msa1009550:intron 30.0%
CAACCTAACTGCATTATAAT+TGG + chr7_1:11196719-11196738 Msa1009550:intron 30.0%
GATCCAATTATAATGCAGTT+AGG - chr7_1:11196725-11196744 None:intergenic 30.0%
AACCAAAAGTAACCGTACAA+AGG - chr7_1:11192483-11192502 None:intergenic 35.0%
!! TTTTCTTTGGAAGCTTGGTT+AGG + chr7_1:11192677-11192696 Msa1009550:intron 35.0%
! ATGAGGAACTTTTTGCAGAA+AGG + chr7_1:11192857-11192876 Msa1009550:intron 35.0%
! GAACTTTTTGCAGAAAGGAA+GGG + chr7_1:11192862-11192881 Msa1009550:intron 35.0%
! AACTTTTTGCAGAAAGGAAG+GGG + chr7_1:11192863-11192882 Msa1009550:intron 35.0%
GGGGCTATTAGATAATAGAT+AGG + chr7_1:11192882-11192901 Msa1009550:intron 35.0%
GATATTGCTAGAAATTGTGC+TGG + chr7_1:11193028-11193047 Msa1009550:intron 35.0%
! ATTTACATTGAAGGTGTGTC+AGG - chr7_1:11193661-11193680 None:intergenic 35.0%
AATAGCTACCTCAAGTTCTT+TGG - chr7_1:11193825-11193844 None:intergenic 35.0%
! AGTGTATTTTGTACGGTGTT+GGG - chr7_1:11193900-11193919 None:intergenic 35.0%
!! TACACTCATTTTAGTGCGTT+TGG + chr7_1:11193914-11193933 Msa1009550:intron 35.0%
GAAACCGTATAGAATGTGTT+CGG + chr7_1:11193971-11193990 Msa1009550:intron 35.0%
GTTTCAGCTTCAAGTATTCA+CGG - chr7_1:11194168-11194187 None:intergenic 35.0%
!! ATCTTTTAGGTGAAGACTTG+GGG + chr7_1:11194328-11194347 Msa1009550:CDS 35.0%
TCAAGATCCTTAGAACTTAG+TGG - chr7_1:11194354-11194373 None:intergenic 35.0%
TACGACTCATATGTAACCTA+AGG - chr7_1:11194498-11194517 None:intergenic 35.0%
! TGTTTGGTTTCAACATGTGT+CGG - chr7_1:11194682-11194701 None:intergenic 35.0%
! TTTCTAATCAAAGGCGTGTT+TGG - chr7_1:11194698-11194717 None:intergenic 35.0%
ATGAATCTCTAGTGTGTATC+TGG + chr7_1:11194729-11194748 Msa1009550:intron 35.0%
AAGAAACTACATTGAGCAGT+TGG - chr7_1:11195068-11195087 None:intergenic 35.0%
GTATGATGGTTTATGAAGCA+CGG - chr7_1:11195846-11195865 None:intergenic 35.0%
TCAATTCCAGAAATCACTAC+AGG + chr7_1:11196124-11196143 Msa1009550:CDS 35.0%
AAATCACTACAGGCAATCAT+GGG + chr7_1:11196134-11196153 Msa1009550:CDS 35.0%
ATATTGCATGCTTTGATCAC+CGG - chr7_1:11196163-11196182 None:intergenic 35.0%
TATTACCCAATCTGCAATGT+AGG - chr7_1:11196240-11196259 None:intergenic 35.0%
CCCATAAATTATTACGCAAG+AGG - chr7_1:11196279-11196298 None:intergenic 35.0%
CAATTGAACCAATTACCTAG+AGG - chr7_1:11196534-11196553 None:intergenic 35.0%
! CTCTAGGTAATTGGTTCAAT+TGG + chr7_1:11196532-11196551 Msa1009550:intron 35.0%
AAACAAACACGGTTGAAAAC+CGG + chr7_1:11196662-11196681 Msa1009550:intron 35.0%
CGATTGAATACAGGTTAAAC+CGG - chr7_1:11196684-11196703 None:intergenic 35.0%
GTTTAACCTGTATTCAATCG+TGG + chr7_1:11196684-11196703 Msa1009550:intron 35.0%
ATTGAACCACGATTGAATAC+AGG - chr7_1:11196693-11196712 None:intergenic 35.0%
! GAACAAGTCGGTTTACTATT+TGG - chr7_1:11196751-11196770 None:intergenic 35.0%
CCGATTTAATTGGTTGAACT+GGG - chr7_1:11196773-11196792 None:intergenic 35.0%
CCCAGTTCAACCAATTAAAT+CGG + chr7_1:11196770-11196789 Msa1009550:intron 35.0%
! ACCGATTTAATTGGTTGAAC+TGG - chr7_1:11196774-11196793 None:intergenic 35.0%
! ATCGAACTGACCGATTTAAT+TGG - chr7_1:11196783-11196802 None:intergenic 35.0%
TTCTGTTCTTTGTGATGCTG+AGG + chr7_1:11192053-11192072 Msa1009550:CDS 40.0%
CTTATCATCTTCTCTACTCG+TGG + chr7_1:11192081-11192100 Msa1009550:CDS 40.0%
!! GTCCTTTGTACGGTTACTTT+TGG + chr7_1:11192478-11192497 Msa1009550:intron 40.0%
CCAAGCTTCCAAAGAAAACA+TGG - chr7_1:11192675-11192694 None:intergenic 40.0%
!! CCATGTTTTCTTTGGAAGCT+TGG + chr7_1:11192672-11192691 Msa1009550:intron 40.0%
TGCATTACTCTATGGTTCAG+AGG - chr7_1:11192783-11192802 None:intergenic 40.0%
! GGAACTTTTTGCAGAAAGGA+AGG + chr7_1:11192861-11192880 Msa1009550:intron 40.0%
GCATGCTCAAAACTCTTGAT+AGG + chr7_1:11193756-11193775 Msa1009550:intron 40.0%
!! GTGTATTTTGTACGGTGTTG+GGG - chr7_1:11193899-11193918 None:intergenic 40.0%
! GAGTGTATTTTGTACGGTGT+TGG - chr7_1:11193901-11193920 None:intergenic 40.0%
!! ATTCATCTCTGAAGCATGTG+AGG + chr7_1:11194394-11194413 Msa1009550:CDS 40.0%
CACATGTGTCTGTATCATGT+TGG + chr7_1:11194647-11194666 Msa1009550:intron 40.0%
TTATTGTGATGTAGTCCTGC+TGG + chr7_1:11195150-11195169 Msa1009550:intron 40.0%
AACAGTTCAATGTAACCAGC+AGG - chr7_1:11195168-11195187 None:intergenic 40.0%
TTTGCAGACACAATTCATGC+TGG + chr7_1:11195199-11195218 Msa1009550:intron 40.0%
ACAATTCATGCTGGACCAAT+TGG + chr7_1:11195208-11195227 Msa1009550:CDS 40.0%
AACCGCAATTTCATCTGCAT+CGG - chr7_1:11195478-11195497 None:intergenic 40.0%
TTGCGGTTGTGATTTCATTG+TGG + chr7_1:11195490-11195509 Msa1009550:intron 40.0%
CCTAATCTTCTTGTAGCCAT+GGG - chr7_1:11195605-11195624 None:intergenic 40.0%
ACCTAATCTTCTTGTAGCCA+TGG - chr7_1:11195606-11195625 None:intergenic 40.0%
CAATTACGGTTGCAGTATGA+TGG - chr7_1:11195860-11195879 None:intergenic 40.0%
GTGGTCTGTAACTGCAATTA+CGG - chr7_1:11195874-11195893 None:intergenic 40.0%
TGATTGCCTGTAGTGATTTC+TGG - chr7_1:11196133-11196152 None:intergenic 40.0%
GAAATCACTACAGGCAATCA+TGG + chr7_1:11196133-11196152 Msa1009550:CDS 40.0%
GGTGATCAAAGCATGCAATA+TGG + chr7_1:11196162-11196181 Msa1009550:CDS 40.0%
TGCAATCCTACATTGCAGAT+TGG + chr7_1:11196231-11196250 Msa1009550:CDS 40.0%
GCAATCCTACATTGCAGATT+GGG + chr7_1:11196232-11196251 Msa1009550:CDS 40.0%
TCATGTTAACAACTGCCCTT+AGG + chr7_1:11196299-11196318 Msa1009550:intron 40.0%
GGTCTCACTCATTTGATCTT+TGG - chr7_1:11196513-11196532 None:intergenic 40.0%
ATCAAATGAGTGAGACCTCT+AGG + chr7_1:11196516-11196535 Msa1009550:intron 40.0%
TTTGTCATCCGGTTCAACTT+TGG - chr7_1:11196572-11196591 None:intergenic 40.0%
CAAGCTCAACAACAAGTGAA+TGG + chr7_1:11196943-11196962 Msa1009550:CDS 40.0%
! CAAGTGAATGGATTTGTTCC+TGG + chr7_1:11196955-11196974 Msa1009550:CDS 40.0%
! TGAATGGATTTGTTCCTGGA+TGG + chr7_1:11196959-11196978 Msa1009550:CDS 40.0%
!! GAGGAAGAGTTGAGTTGAAG+AGG + chr7_1:11191956-11191975 Msa1009550:CDS 45.0%
CTTGGTTAGGTGACTCTTGA+TGG + chr7_1:11192690-11192709 Msa1009550:intron 45.0%
!! GCATGCTGTTTCAACAAACC+AGG - chr7_1:11193742-11193761 None:intergenic 45.0%
! AGGTACCAGAAGTGCAGTTA+TGG + chr7_1:11193776-11193795 Msa1009550:CDS 45.0%
CAAACCTGCCAAAGAACTTG+AGG + chr7_1:11193814-11193833 Msa1009550:CDS 45.0%
AGGATCTTGAGCAGCTTGAA+CGG + chr7_1:11194364-11194383 Msa1009550:CDS 45.0%
GAAGCATGTGAGGTCAACAA+AGG + chr7_1:11194404-11194423 Msa1009550:CDS 45.0%
AGGGGAGATGCTATTGCATA+AGG - chr7_1:11195124-11195143 None:intergenic 45.0%
TAATGTTGCAGCCGCAATTG+TGG + chr7_1:11195528-11195547 Msa1009550:intron 45.0%
TGCTACTGCAACCACAATTG+CGG - chr7_1:11195542-11195561 None:intergenic 45.0%
TGGTTGCAGTAGCAATCACA+CGG + chr7_1:11195548-11195567 Msa1009550:intron 45.0%
CCCATGGCTACAAGAAGATT+AGG + chr7_1:11195602-11195621 Msa1009550:intron 45.0%
GAGTGAGACCTCTAGGTAAT+TGG + chr7_1:11196523-11196542 Msa1009550:intron 45.0%
TGGTTGAACTGGGAACAAGT+CGG - chr7_1:11196763-11196782 None:intergenic 45.0%
!!! TTATTTTTTAATCAATTTTT+TGG + chr7_1:11192325-11192344 Msa1009550:intron 5.0%
AACCGCATGTGTCAGCAACT+CGG + chr7_1:11193618-11193637 Msa1009550:intron 50.0%
CAGCACCATAACTGCACTTC+TGG - chr7_1:11193784-11193803 None:intergenic 50.0%
GCTACCTCAAGTTCTTTGGC+AGG - chr7_1:11193821-11193840 None:intergenic 50.0%
CTTGGGGCCACTAAGTTCTA+AGG + chr7_1:11194344-11194363 Msa1009550:CDS 50.0%
TGAGCAGCTTGAACGGCAAT+TGG + chr7_1:11194371-11194390 Msa1009550:CDS 50.0%
GGCCGATGCAGATGAAATTG+CGG + chr7_1:11195473-11195492 Msa1009550:intron 50.0%
CAGTAGCAATCACACGGTTG+CGG + chr7_1:11195554-11195573 Msa1009550:intron 50.0%
TCCTCAGACAAGGTGTGTCT+CGG - chr7_1:11195819-11195838 None:intergenic 50.0%
TACAGGCAATCATGGGAAGC+CGG + chr7_1:11196141-11196160 Msa1009550:CDS 50.0%
TAGGATTGCAATCCAGCTGC+TGG - chr7_1:11196221-11196240 None:intergenic 50.0%
CACCGAGTTGCTGACACATG+CGG - chr7_1:11193623-11193642 None:intergenic 55.0%
CGGTTGTTGCTGCTACGCTA+CGG + chr7_1:11195427-11195446 Msa1009550:intron 55.0%
ACCGAGACACACCTTGTCTG+AGG + chr7_1:11195815-11195834 Msa1009550:intron 55.0%
TCAGAGCTTCTTCCAGCAGC+TGG + chr7_1:11196206-11196225 Msa1009550:CDS 55.0%
GCACGGACACTCCTCAGACA+AGG - chr7_1:11195829-11195848 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 11191949 11196990 11191949 ID=Msa1009550;Name=Msa1009550
chr7_1 mRNA 11191949 11196990 11191949 ID=Msa1009550-mRNA-1;Parent=Msa1009550;Name=Msa1009550-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|8|0|249
chr7_1 exon 11191949 11192133 11191949 ID=Msa1009550-mRNA-1:exon:2973;Parent=Msa1009550-mRNA-1
chr7_1 exon 11193757 11193835 11193757 ID=Msa1009550-mRNA-1:exon:2974;Parent=Msa1009550-mRNA-1
chr7_1 exon 11194157 11194218 11194157 ID=Msa1009550-mRNA-1:exon:2975;Parent=Msa1009550-mRNA-1
chr7_1 exon 11194326 11194425 11194326 ID=Msa1009550-mRNA-1:exon:2976;Parent=Msa1009550-mRNA-1
chr7_1 exon 11195206 11195247 11195206 ID=Msa1009550-mRNA-1:exon:2977;Parent=Msa1009550-mRNA-1
chr7_1 exon 11195331 11195372 11195331 ID=Msa1009550-mRNA-1:exon:2978;Parent=Msa1009550-mRNA-1
chr7_1 exon 11196114 11196253 11196114 ID=Msa1009550-mRNA-1:exon:2979;Parent=Msa1009550-mRNA-1
chr7_1 exon 11196891 11196990 11196891 ID=Msa1009550-mRNA-1:exon:2980;Parent=Msa1009550-mRNA-1
chr7_1 CDS 11191949 11192133 11191949 ID=Msa1009550-mRNA-1:cds;Parent=Msa1009550-mRNA-1
chr7_1 CDS 11193757 11193835 11193757 ID=Msa1009550-mRNA-1:cds;Parent=Msa1009550-mRNA-1
chr7_1 CDS 11194157 11194218 11194157 ID=Msa1009550-mRNA-1:cds;Parent=Msa1009550-mRNA-1
chr7_1 CDS 11194326 11194425 11194326 ID=Msa1009550-mRNA-1:cds;Parent=Msa1009550-mRNA-1
chr7_1 CDS 11195206 11195247 11195206 ID=Msa1009550-mRNA-1:cds;Parent=Msa1009550-mRNA-1
chr7_1 CDS 11195331 11195372 11195331 ID=Msa1009550-mRNA-1:cds;Parent=Msa1009550-mRNA-1
chr7_1 CDS 11196114 11196253 11196114 ID=Msa1009550-mRNA-1:cds;Parent=Msa1009550-mRNA-1
chr7_1 CDS 11196891 11196990 11196891 ID=Msa1009550-mRNA-1:cds;Parent=Msa1009550-mRNA-1
Gene Sequence

>Msa1009550

ATGGGAAGAGGAAGAGTTGAGTTGAAGAGGATAGAGAACAAGATAAACAGACAAGTTACATTTGCAAAGAGAAGAAATGGTCTTCTTAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTACTCGTGGAAAGCTTTATGAATTTTGTAGCACATCTAACATGCTCAAAACTCTTGATAGGTACCAGAAGTGCAGTTATGGTGCTGTAGAAGTTAGCAAACCTGCCAAAGAACTTGAGAGCAGCTACCGTGAATACTTGAAGCTGAAACAAAGATTTGAAAATCTTCAAAGAACACAGAGAAATCTTTTAGGTGAAGACTTGGGGCCACTAAGTTCTAAGGATCTTGAGCAGCTTGAACGGCAATTGGATTCATCTCTGAAGCATGTGAGGTCAACAAAGACACAATTCATGCTGGACCAATTGGCTGATCTTCAAAATAAGGAACATATGTTGGTTGAAGCAAACAGATCCTTGTCAATTAAGTTGGAGGAAATCAATTCCAGAAATCACTACAGGCAATCATGGGAAGCCGGTGATCAAAGCATGCAATATGGTGATCAGCAGAATGCTCACTCTCAGAGCTTCTTCCAGCAGCTGGATTGCAATCCTACATTGCAGATTGGTTCTGATTATAGGTACAACAATGTAGCTTCAGATCAGATAGCTTCAACAAGTCAAGCTCAACAACAAGTGAATGGATTTGTTCCTGGATGGATGCTATAA
Protein sequence

>Msa1009550

MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTSNMLKTLDRYQKCSYGAVEVSKPAKELESSYREYLKLKQRFENLQRTQRNLLGEDLGPLSSKDLEQLERQLDSSLKHVRSTKTQFMLDQLADLQNKEHMLVEANRSLSIKLEEINSRNHYRQSWEAGDQSMQYGDQQNAHSQSFFQQLDCNPTLQIGSDYRYNNVASDQIASTSQAQQQVNGFVPGWML*