AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1010410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1010410 MtrunA17_Chr6g0485301 77.637 237 43 2 194 420 213 449 3.93e-122 363
Msa1010410 MtrunA17_Chr8g0390631 60.473 296 96 5 137 419 153 440 1.29e-113 342
Msa1010410 MtrunA17_Chr8g0390651 69.620 237 62 2 194 420 214 450 6.63e-110 332
Msa1010410 MtrunA17_Chr6g0485311 58.784 296 101 5 137 419 159 446 2.35e-100 308
Msa1010410 MtrunA17_Chr6g0469321 84.375 160 24 1 1 159 1 160 2.41e-86 260
Msa1010410 MtrunA17_Chr8g0365221 46.414 237 117 2 194 420 252 488 3.84e-71 233
Msa1010410 MtrunA17_Chr3g0117861 49.583 240 103 4 194 419 253 488 2.34e-69 228
Msa1010410 MtrunA17_Chr4g0059221 46.610 236 116 2 194 419 255 490 3.15e-67 223
Msa1010410 MtrunA17_Chr3g0118121 36.134 238 139 4 194 419 205 441 9.40e-44 159
Msa1010410 MtrunA17_Chr4g0059521 35.714 238 140 4 194 419 205 441 1.15e-43 159
Msa1010410 MtrunA17_Chr3g0118081 35.146 239 142 4 194 420 235 472 2.19e-42 156
Msa1010410 MtrunA17_Chr2g0310091 37.500 224 133 3 191 408 252 474 1.04e-39 149
Msa1010410 MtrunA17_Chr1g0149841 67.290 107 35 0 48 154 186 292 4.22e-31 124
Msa1010410 MtrunA17_Chr2g0294411 28.916 249 163 7 183 420 237 482 4.11e-24 104
Msa1010410 MtrunA17_Chr3g0137101 68.919 74 22 1 70 143 215 287 4.79e-24 104
Msa1010410 MtrunA17_Chr1g0149831 76.923 52 9 1 70 121 145 193 8.50e-18 82.0
Msa1010410 MtrunA17_Chr7g0275891 43.651 126 45 6 70 180 208 322 2.69e-15 76.6
Msa1010410 MtrunA17_Chr2g0279751 29.825 228 143 7 194 407 204 428 8.47e-15 76.3
Msa1010410 MtrunA17_Chr1g0149961 24.255 235 164 4 194 420 212 440 1.21e-14 75.5
Msa1010410 MtrunA17_Chr4g0049641 29.204 226 143 7 194 405 231 453 1.22e-14 75.9
Msa1010410 MtrunA17_Chr2g0294911 53.125 64 30 0 70 133 228 291 1.92e-14 75.5
Msa1010410 MtrunA17_Chr4g0067981 53.521 71 30 1 63 133 225 292 4.24e-14 74.3
Msa1010410 MtrunA17_Chr1g0161431 65.385 52 18 0 70 121 217 268 4.84e-14 73.9
Msa1010410 MtrunA17_Chr7g0262111 58.889 90 33 2 1 86 290 379 4.96e-14 73.9
Msa1010410 MtrunA17_Chr2g0300801 26.531 196 142 2 215 409 241 435 1.11e-13 72.8
Msa1010410 MtrunA17_Chr4g0074171 24.153 236 163 6 194 420 212 440 3.14e-13 71.2
Msa1010410 MtrunA17_Chr2g0304841 56.164 73 27 3 70 141 230 298 1.32e-12 69.7
Msa1010410 MtrunA17_Chr1g0149851 43.925 107 48 3 77 179 230 328 3.42e-12 68.2
Msa1010410 MtrunA17_Chr2g0313821 41.558 77 40 3 14 86 311 386 3.24e-11 65.1
Msa1010410 MtrunA17_Chr1g0193811 48.276 58 29 1 10 66 307 364 4.22e-11 64.7
Msa1010410 MtrunA17_Chr4g0031961 48.649 74 31 1 70 143 148 214 5.97e-11 63.2
Msa1010410 MtrunA17_Chr4g0074401 47.561 82 31 3 64 141 210 283 8.74e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1010410 AT3G24503.1 62.712 236 78 2 194 419 212 447 3.82e-96 297
Msa1010410 AT3G48000.1 48.963 241 105 4 194 420 249 485 3.88e-71 233
Msa1010410 AT1G23800.1 48.963 241 105 4 194 420 245 481 7.67e-70 230
Msa1010410 AT3G48170.1 36.134 238 139 4 194 419 205 441 2.67e-44 161
Msa1010410 AT1G74920.2 35.983 239 140 4 194 420 200 437 4.06e-44 160
Msa1010410 AT1G74920.1 35.983 239 140 4 194 420 205 442 4.92e-44 160
Msa1010410 AT1G79440.1 36.000 225 133 3 194 408 242 465 1.98e-35 137
Msa1010410 AT1G23800.2 49.635 137 51 4 194 316 245 377 1.78e-31 124
Msa1010410 AT3G66658.2 28.151 238 159 6 194 420 246 482 2.87e-22 99.8
Msa1010410 AT3G66658.1 28.151 238 159 6 194 420 246 482 3.62e-22 99.4
Msa1010410 AT1G54100.2 30.653 199 126 5 215 407 240 432 5.28e-19 89.4
Msa1010410 AT1G54100.1 30.653 199 126 5 215 407 240 432 5.28e-19 89.4
Msa1010410 AT2G14170.1 31.556 225 139 5 194 405 303 525 1.04e-16 82.8
Msa1010410 AT2G14170.3 31.556 225 139 5 194 405 303 525 1.05e-16 82.8
Msa1010410 AT2G14170.2 31.556 225 139 5 194 405 194 416 1.73e-16 81.6
Msa1010410 AT3G16857.3 50.617 81 34 1 70 150 184 258 8.80e-16 79.7
Msa1010410 AT3G16857.2 50.617 81 34 1 70 150 254 328 1.00e-15 79.7
Msa1010410 AT3G16857.1 50.617 81 34 1 70 150 254 328 1.27e-15 79.3
Msa1010410 AT2G25180.1 53.333 75 29 2 70 143 212 281 8.20e-15 77.0
Msa1010410 AT5G58080.1 45.545 101 47 3 70 167 211 306 1.07e-13 73.6
Msa1010410 AT1G75130.1 55.932 59 25 1 1 58 288 346 5.66e-13 70.9
Msa1010410 AT2G24270.2 24.590 244 152 8 194 420 252 480 1.94e-12 69.3
Msa1010410 AT2G24270.3 24.590 244 152 8 194 420 212 440 2.23e-12 68.9
Msa1010410 AT2G24270.1 24.590 244 152 8 194 420 212 440 2.23e-12 68.9
Msa1010410 AT2G24270.4 24.590 244 152 8 194 420 212 440 2.50e-12 68.9
Msa1010410 AT2G46950.2 56.000 50 21 1 10 58 360 409 9.58e-12 67.0
Msa1010410 AT2G46950.1 56.000 50 21 1 10 58 360 409 9.62e-12 67.4
Msa1010410 AT2G01760.3 72.093 43 12 0 70 112 152 194 1.10e-11 65.9
Msa1010410 AT2G01760.1 72.093 43 12 0 70 112 217 259 1.58e-11 65.9
Msa1010410 AT4G31920.1 46.154 78 33 2 70 143 200 272 1.79e-11 66.2
Msa1010410 AT2G01760.2 72.093 43 12 0 70 112 245 287 2.03e-11 65.9
Msa1010410 AT2G46960.1 51.852 54 25 1 6 58 186 239 7.00e-11 63.9

Find 82 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGGTAAGGTTAGCTTTAC+TGG 0.225096 7_1:-13483850 Msa1010410:CDS
AGTAATTGTGACAAAGAATT+TGG 0.234315 7_1:-13483281 Msa1010410:CDS
CGAGGACCTTGTTGAACTTT+AGG 0.236292 7_1:+13483559 None:intergenic
AAACCAGCTTCACTTGAATT+AGG 0.247929 7_1:-13483781 Msa1010410:CDS
TATTAACCATGTTGATATTA+AGG 0.251515 7_1:-13483953 Msa1010410:CDS
TTAGATAGAGTCTATACTTC+TGG 0.271571 7_1:+13484181 None:intergenic
GAAAAGAGGGTTAATCAATT+AGG 0.296536 7_1:-13484285 Msa1010410:CDS
ACAACACAAGATGAGATATT+TGG 0.306145 7_1:-13483385 Msa1010410:CDS
AACTTCATGAGTGCCATTAC+AGG 0.320131 7_1:+13483361 None:intergenic
CAACATCTAACTTGTTAACT+TGG 0.322163 7_1:-13484389 Msa1010410:CDS
CTCATGAAGTTCAAGACTAT+TGG 0.328116 7_1:-13483349 Msa1010410:CDS
GGAAGATAAGTGTTTGTTCC+AGG 0.357701 7_1:+13483985 None:intergenic
TTCAACAAGACGTGAAATAA+TGG 0.361036 7_1:-13483827 Msa1010410:CDS
TCCAACTCCACTTCTTAAAT+AGG 0.361147 7_1:+13484089 None:intergenic
TTAACATTGGAGAAAATTGT+AGG 0.377777 7_1:+13483421 None:intergenic
GAATGTAAAACCTACTTTGC+TGG 0.377877 7_1:-13484420 Msa1010410:CDS
AGTGCCAACAATAAAAGATA+TGG 0.406439 7_1:-13483313 Msa1010410:CDS
ACAGAAGGTGCAATGGTATT+CGG 0.412468 7_1:-13484026 Msa1010410:CDS
CTCGATGTAGTACCTGGATT+TGG 0.433604 7_1:-13483886 Msa1010410:CDS
TTTATTGTTGGCACTTCTGA+TGG 0.435959 7_1:+13483321 None:intergenic
CCTCCTAATTCAAGTGAAGC+TGG 0.438912 7_1:+13483778 None:intergenic
GGAAAACAAACAAGATCATA+TGG 0.443079 7_1:-13484142 Msa1010410:CDS
TGCATCTGAACTACTAGTTA+AGG 0.446478 7_1:+13484113 None:intergenic
TGTTGAACTTTAGGATCAAA+AGG 0.452062 7_1:+13483568 None:intergenic
TGAATTTGAGAAGATGTTAG+TGG 0.466452 7_1:-13483620 Msa1010410:CDS
TAGAGAAGAAATTGAAAAGA+GGG 0.475706 7_1:-13484298 Msa1010410:CDS
CTAAAGTTCAACAAGGTCCT+CGG 0.483519 7_1:-13483558 Msa1010410:CDS
CTCATCTTGTGTTGTATGCA+TGG 0.484702 7_1:+13483393 None:intergenic
ATTCTTTCATATATTGAGCA+TGG 0.484714 7_1:-13483511 Msa1010410:CDS
ACATGGTTAATAGATTCTCT+TGG 0.487239 7_1:+13483964 None:intergenic
AACAATAAAAGATATGGCTT+AGG 0.489878 7_1:-13483307 Msa1010410:CDS
CATTAGCATCGTATTTAACA+AGG 0.497087 7_1:-13483695 Msa1010410:CDS
TCCTATTTAAGAAGTGGAGT+TGG 0.497128 7_1:-13484090 Msa1010410:CDS
CTAGAGAAGAAATTGAAAAG+AGG 0.498815 7_1:-13484299 Msa1010410:CDS
GATGCATCCTATTTAAGAAG+TGG 0.500111 7_1:-13484096 Msa1010410:CDS
AAGACACGTGAAGAAATTGA+TGG 0.504719 7_1:-13484327 Msa1010410:CDS
TCTCGTGTGTTTGTTCAAGA+AGG 0.505481 7_1:-13483652 Msa1010410:CDS
AAAGCAAGAGCTTGGGCTGT+TGG 0.506234 7_1:-13483595 Msa1010410:CDS
GGAGTACTCGATGTAGTACC+TGG 0.509801 7_1:-13483892 Msa1010410:CDS
TGAGATATTTGGCCCTGTAA+TGG 0.512015 7_1:-13483374 Msa1010410:CDS
AACATCTAACTTGTTAACTT+GGG 0.513062 7_1:-13484388 Msa1010410:CDS
CCTGCAGTTGCACCAAATCC+AGG 0.513945 7_1:+13483874 None:intergenic
ATTGAGCATGGACAGAAAGA+TGG 0.515764 7_1:-13483499 Msa1010410:CDS
TATTAGCAAAATATCAAGAA+TGG 0.516199 7_1:-13484356 Msa1010410:CDS
AGTTTCTACAAGAATGAAGT+TGG 0.522151 7_1:-13484480 Msa1010410:CDS
TAAAGTTCAACAAGGTCCTC+GGG 0.523355 7_1:-13483557 Msa1010410:CDS
TTTGGTGCAACTGCAGGAAC+TGG 0.523481 7_1:-13483868 Msa1010410:CDS
TGGAGAAGATAGACTACAGC+TGG 0.525660 7_1:-13484457 Msa1010410:CDS
TATTTAAGAAGTGGAGTTGG+AGG 0.527033 7_1:-13484087 Msa1010410:CDS
CCTGGATTTGGTGCAACTGC+AGG 0.534107 7_1:-13483874 Msa1010410:CDS
ATCTGAAATTCCATCCGGTA+TGG 0.542059 7_1:+13483915 None:intergenic
AGTGGACAAAGCAAGAGCTT+GGG 0.542455 7_1:-13483602 Msa1010410:CDS
CCAGCTTCACTTGAATTAGG+AGG 0.544210 7_1:-13483778 Msa1010410:CDS
TAGTGGACAAAGCAAGAGCT+TGG 0.545318 7_1:-13483603 Msa1010410:CDS
ATACTTTACTTGAAAACAGA+AGG 0.547861 7_1:-13484041 Msa1010410:CDS
TGTTCGAATGGACCTTGATA+CGG 0.551812 7_1:+13483246 None:intergenic
CCAAATAACTCATGTTCGAA+TGG 0.554923 7_1:+13483234 None:intergenic
ATATAGCAAGCACCGTATCA+AGG 0.555289 7_1:-13483258 Msa1010410:CDS
TTCTACAAGAATGAAGTTGG+TGG 0.559129 7_1:-13484477 Msa1010410:CDS
CTTGAAAACAGAAGGTGCAA+TGG 0.560167 7_1:-13484033 Msa1010410:CDS
ATGCATGGCCTCCTTAACAT+TGG 0.566139 7_1:+13483408 None:intergenic
GATGGAGTAACTCTTTCGAC+AGG 0.572416 7_1:-13483481 Msa1010410:CDS
ACTCCATCTGAAATTCCATC+CGG 0.572802 7_1:+13483910 None:intergenic
TCTATACTTCTGGAGACGGC+TGG 0.574309 7_1:+13484191 None:intergenic
TGCAACTGCAGGAACTGGTA+AGG 0.578355 7_1:-13483863 Msa1010410:CDS
TGAAAAGCTGACATGGGAGA+AGG 0.578825 7_1:-13484217 Msa1010410:CDS
ACTTCATGAGTGCCATTACA+GGG 0.580986 7_1:+13483362 None:intergenic
AAGGTCCTCGGGCTGACAAG+AGG 0.587054 7_1:-13483546 Msa1010410:CDS
ATACCGGATGGAATTTCAGA+TGG 0.588955 7_1:-13483913 Msa1010410:CDS
GAGTTCGTTAAAGACCATAC+CGG 0.606961 7_1:-13483929 Msa1010410:CDS
AGACACGTGAAGAAATTGAT+GGG 0.609154 7_1:-13484326 Msa1010410:CDS
AGAGTCTATACTTCTGGAGA+CGG 0.609987 7_1:+13484187 None:intergenic
TCAAGCACAAAGAAACAACC+TGG 0.619867 7_1:-13484003 Msa1010410:CDS
TGAATGTTGAAAAGCTGACA+TGG 0.624466 7_1:-13484224 Msa1010410:CDS
AATTTCCTCTTGTCAGCCCG+AGG 0.625717 7_1:+13483541 None:intergenic
AACTCTCCTTAATATCAACA+TGG 0.638325 7_1:+13483947 None:intergenic
ATTAGCATCGTATTTAACAA+GGG 0.639693 7_1:-13483694 Msa1010410:CDS
TCGTTAAAGACCATACCGGA+TGG 0.643022 7_1:-13483925 Msa1010410:CDS
AAAGCTGACATGGGAGAAGG+CGG 0.658945 7_1:-13484214 Msa1010410:CDS
TTTGATCCTAAAGTTCAACA+AGG 0.673250 7_1:-13483565 Msa1010410:CDS
TAATCAATTAGGCATTGACA+AGG 0.692865 7_1:-13484274 Msa1010410:CDS
GAATGTTGAAAAGCTGACAT+GGG 0.714309 7_1:-13484223 Msa1010410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGCATTATAAAAAATTAAGA+GGG + chr7_1:13483982-13484001 None:intergenic 15.0%
!! AGCATTATAAAAAATTAAGA+GGG + chr7_1:13483982-13484001 None:intergenic 15.0%
!! TATTAGCAAAATATCAAGAA+TGG - chr7_1:13483370-13483389 Msa1010410:CDS 20.0%
!! TATTAACCATGTTGATATTA+AGG - chr7_1:13483773-13483792 Msa1010410:CDS 20.0%
!! GCATTATAAAAAATTAAGAG+GGG + chr7_1:13483981-13484000 None:intergenic 20.0%
!! CAGCATTATAAAAAATTAAG+AGG + chr7_1:13483983-13484002 None:intergenic 20.0%
!! TATTAGCAAAATATCAAGAA+TGG - chr7_1:13483370-13483389 Msa1010410:CDS 20.0%
!! TATTAACCATGTTGATATTA+AGG - chr7_1:13483773-13483792 Msa1010410:CDS 20.0%
!! GCATTATAAAAAATTAAGAG+GGG + chr7_1:13483981-13484000 None:intergenic 20.0%
!! CAGCATTATAAAAAATTAAG+AGG + chr7_1:13483983-13484002 None:intergenic 20.0%
!!! AACATCTAACTTGTTAACTT+GGG - chr7_1:13483338-13483357 Msa1010410:CDS 25.0%
! TAGAGAAGAAATTGAAAAGA+GGG - chr7_1:13483428-13483447 Msa1010410:CDS 25.0%
!! ATCAGTTCAAGAATCTTTTT+CGG + chr7_1:13483483-13483502 None:intergenic 25.0%
! TCTAAAAAAAGTTAGTTGTG+TGG - chr7_1:13483563-13483582 Msa1010410:CDS 25.0%
! ATACTTTACTTGAAAACAGA+AGG - chr7_1:13483685-13483704 Msa1010410:CDS 25.0%
! ATTAGCATCGTATTTAACAA+GGG - chr7_1:13484032-13484051 Msa1010410:CDS 25.0%
! ATTCTTTCATATATTGAGCA+TGG - chr7_1:13484215-13484234 Msa1010410:CDS 25.0%
! TTAACATTGGAGAAAATTGT+AGG + chr7_1:13484308-13484327 None:intergenic 25.0%
!! TACAATTTTCTCCAATGTTA+AGG - chr7_1:13484307-13484326 Msa1010410:CDS 25.0%
!! TAAGCCATATCTTTTATTGT+TGG + chr7_1:13484420-13484439 None:intergenic 25.0%
! AACAATAAAAGATATGGCTT+AGG - chr7_1:13484419-13484438 Msa1010410:CDS 25.0%
! AGTAATTGTGACAAAGAATT+TGG - chr7_1:13484445-13484464 Msa1010410:CDS 25.0%
!!! AACATCTAACTTGTTAACTT+GGG - chr7_1:13483338-13483357 Msa1010410:CDS 25.0%
! TAGAGAAGAAATTGAAAAGA+GGG - chr7_1:13483428-13483447 Msa1010410:CDS 25.0%
!! ATCAGTTCAAGAATCTTTTT+CGG + chr7_1:13483483-13483502 None:intergenic 25.0%
! TCTAAAAAAAGTTAGTTGTG+TGG - chr7_1:13483563-13483582 Msa1010410:CDS 25.0%
! ATACTTTACTTGAAAACAGA+AGG - chr7_1:13483685-13483704 Msa1010410:CDS 25.0%
! ATTAGCATCGTATTTAACAA+GGG - chr7_1:13484032-13484051 Msa1010410:CDS 25.0%
! ATTCTTTCATATATTGAGCA+TGG - chr7_1:13484215-13484234 Msa1010410:CDS 25.0%
! TTAACATTGGAGAAAATTGT+AGG + chr7_1:13484308-13484327 None:intergenic 25.0%
!! TACAATTTTCTCCAATGTTA+AGG - chr7_1:13484307-13484326 Msa1010410:CDS 25.0%
!! TAAGCCATATCTTTTATTGT+TGG + chr7_1:13484420-13484439 None:intergenic 25.0%
! AACAATAAAAGATATGGCTT+AGG - chr7_1:13484419-13484438 Msa1010410:CDS 25.0%
! AGTAATTGTGACAAAGAATT+TGG - chr7_1:13484445-13484464 Msa1010410:CDS 25.0%
AGTTTCTACAAGAATGAAGT+TGG - chr7_1:13483246-13483265 Msa1010410:CDS 30.0%
!! CAACATCTAACTTGTTAACT+TGG - chr7_1:13483337-13483356 Msa1010410:CDS 30.0%
CTAGAGAAGAAATTGAAAAG+AGG - chr7_1:13483427-13483446 Msa1010410:CDS 30.0%
GAAAAGAGGGTTAATCAATT+AGG - chr7_1:13483441-13483460 Msa1010410:CDS 30.0%
!! TAATCAATTAGGCATTGACA+AGG - chr7_1:13483452-13483471 Msa1010410:CDS 30.0%
TTAGATAGAGTCTATACTTC+TGG + chr7_1:13483548-13483567 None:intergenic 30.0%
GGAAAACAAACAAGATCATA+TGG - chr7_1:13483584-13483603 Msa1010410:CDS 30.0%
ACATGGTTAATAGATTCTCT+TGG + chr7_1:13483765-13483784 None:intergenic 30.0%
AACTCTCCTTAATATCAACA+TGG + chr7_1:13483782-13483801 None:intergenic 30.0%
TTCAACAAGACGTGAAATAA+TGG - chr7_1:13483899-13483918 Msa1010410:CDS 30.0%
CATTAGCATCGTATTTAACA+AGG - chr7_1:13484031-13484050 Msa1010410:CDS 30.0%
TGAATTTGAGAAGATGTTAG+TGG - chr7_1:13484106-13484125 Msa1010410:CDS 30.0%
!! TGTTGAACTTTAGGATCAAA+AGG + chr7_1:13484161-13484180 None:intergenic 30.0%
TTTGATCCTAAAGTTCAACA+AGG - chr7_1:13484161-13484180 Msa1010410:CDS 30.0%
TCGACAGGTAGTAAAAAAAT+TGG - chr7_1:13484260-13484279 Msa1010410:CDS 30.0%
! AATTTTCTCCAATGTTAAGG+AGG - chr7_1:13484310-13484329 Msa1010410:CDS 30.0%
ACAACACAAGATGAGATATT+TGG - chr7_1:13484341-13484360 Msa1010410:CDS 30.0%
AGTGCCAACAATAAAAGATA+TGG - chr7_1:13484413-13484432 Msa1010410:CDS 30.0%
AGTTTCTACAAGAATGAAGT+TGG - chr7_1:13483246-13483265 Msa1010410:CDS 30.0%
!! CAACATCTAACTTGTTAACT+TGG - chr7_1:13483337-13483356 Msa1010410:CDS 30.0%
CTAGAGAAGAAATTGAAAAG+AGG - chr7_1:13483427-13483446 Msa1010410:CDS 30.0%
GAAAAGAGGGTTAATCAATT+AGG - chr7_1:13483441-13483460 Msa1010410:CDS 30.0%
!! TAATCAATTAGGCATTGACA+AGG - chr7_1:13483452-13483471 Msa1010410:CDS 30.0%
TTAGATAGAGTCTATACTTC+TGG + chr7_1:13483548-13483567 None:intergenic 30.0%
GGAAAACAAACAAGATCATA+TGG - chr7_1:13483584-13483603 Msa1010410:CDS 30.0%
ACATGGTTAATAGATTCTCT+TGG + chr7_1:13483765-13483784 None:intergenic 30.0%
AACTCTCCTTAATATCAACA+TGG + chr7_1:13483782-13483801 None:intergenic 30.0%
TTCAACAAGACGTGAAATAA+TGG - chr7_1:13483899-13483918 Msa1010410:CDS 30.0%
CATTAGCATCGTATTTAACA+AGG - chr7_1:13484031-13484050 Msa1010410:CDS 30.0%
TGAATTTGAGAAGATGTTAG+TGG - chr7_1:13484106-13484125 Msa1010410:CDS 30.0%
!! TGTTGAACTTTAGGATCAAA+AGG + chr7_1:13484161-13484180 None:intergenic 30.0%
TTTGATCCTAAAGTTCAACA+AGG - chr7_1:13484161-13484180 Msa1010410:CDS 30.0%
TCGACAGGTAGTAAAAAAAT+TGG - chr7_1:13484260-13484279 Msa1010410:CDS 30.0%
! AATTTTCTCCAATGTTAAGG+AGG - chr7_1:13484310-13484329 Msa1010410:CDS 30.0%
ACAACACAAGATGAGATATT+TGG - chr7_1:13484341-13484360 Msa1010410:CDS 30.0%
AGTGCCAACAATAAAAGATA+TGG - chr7_1:13484413-13484432 Msa1010410:CDS 30.0%
TTCTACAAGAATGAAGTTGG+TGG - chr7_1:13483249-13483268 Msa1010410:CDS 35.0%
GAATGTAAAACCTACTTTGC+TGG - chr7_1:13483306-13483325 Msa1010410:CDS 35.0%
! TGTATCTTTTCCAGCAAAGT+AGG + chr7_1:13483319-13483338 None:intergenic 35.0%
AAGACACGTGAAGAAATTGA+TGG - chr7_1:13483399-13483418 Msa1010410:CDS 35.0%
AGACACGTGAAGAAATTGAT+GGG - chr7_1:13483400-13483419 Msa1010410:CDS 35.0%
TGAATGTTGAAAAGCTGACA+TGG - chr7_1:13483502-13483521 Msa1010410:CDS 35.0%
GAATGTTGAAAAGCTGACAT+GGG - chr7_1:13483503-13483522 Msa1010410:CDS 35.0%
TGCATCTGAACTACTAGTTA+AGG + chr7_1:13483616-13483635 None:intergenic 35.0%
GATGCATCCTATTTAAGAAG+TGG - chr7_1:13483630-13483649 Msa1010410:CDS 35.0%
TCCTATTTAAGAAGTGGAGT+TGG - chr7_1:13483636-13483655 Msa1010410:CDS 35.0%
TCCAACTCCACTTCTTAAAT+AGG + chr7_1:13483640-13483659 None:intergenic 35.0%
TATTTAAGAAGTGGAGTTGG+AGG - chr7_1:13483639-13483658 Msa1010410:CDS 35.0%
AAACCAGCTTCACTTGAATT+AGG - chr7_1:13483945-13483964 Msa1010410:CDS 35.0%
CTCATGAAGTTCAAGACTAT+TGG - chr7_1:13484377-13484396 Msa1010410:CDS 35.0%
TTTATTGTTGGCACTTCTGA+TGG + chr7_1:13484408-13484427 None:intergenic 35.0%
TTCTACAAGAATGAAGTTGG+TGG - chr7_1:13483249-13483268 Msa1010410:CDS 35.0%
GAATGTAAAACCTACTTTGC+TGG - chr7_1:13483306-13483325 Msa1010410:CDS 35.0%
! TGTATCTTTTCCAGCAAAGT+AGG + chr7_1:13483319-13483338 None:intergenic 35.0%
AAGACACGTGAAGAAATTGA+TGG - chr7_1:13483399-13483418 Msa1010410:CDS 35.0%
AGACACGTGAAGAAATTGAT+GGG - chr7_1:13483400-13483419 Msa1010410:CDS 35.0%
TGAATGTTGAAAAGCTGACA+TGG - chr7_1:13483502-13483521 Msa1010410:CDS 35.0%
GAATGTTGAAAAGCTGACAT+GGG - chr7_1:13483503-13483522 Msa1010410:CDS 35.0%
TGCATCTGAACTACTAGTTA+AGG + chr7_1:13483616-13483635 None:intergenic 35.0%
GATGCATCCTATTTAAGAAG+TGG - chr7_1:13483630-13483649 Msa1010410:CDS 35.0%
TCCTATTTAAGAAGTGGAGT+TGG - chr7_1:13483636-13483655 Msa1010410:CDS 35.0%
TCCAACTCCACTTCTTAAAT+AGG + chr7_1:13483640-13483659 None:intergenic 35.0%
TATTTAAGAAGTGGAGTTGG+AGG - chr7_1:13483639-13483658 Msa1010410:CDS 35.0%
AAACCAGCTTCACTTGAATT+AGG - chr7_1:13483945-13483964 Msa1010410:CDS 35.0%
CTCATGAAGTTCAAGACTAT+TGG - chr7_1:13484377-13484396 Msa1010410:CDS 35.0%
TTTATTGTTGGCACTTCTGA+TGG + chr7_1:13484408-13484427 None:intergenic 35.0%
! AGAGTCTATACTTCTGGAGA+CGG + chr7_1:13483542-13483561 None:intergenic 40.0%
! CTTGAAAACAGAAGGTGCAA+TGG - chr7_1:13483693-13483712 Msa1010410:CDS 40.0%
! ACAGAAGGTGCAATGGTATT+CGG - chr7_1:13483700-13483719 Msa1010410:CDS 40.0%
TCAAGCACAAAGAAACAACC+TGG - chr7_1:13483723-13483742 Msa1010410:CDS 40.0%
GGAAGATAAGTGTTTGTTCC+AGG + chr7_1:13483744-13483763 None:intergenic 40.0%
GAGTTCGTTAAAGACCATAC+CGG - chr7_1:13483797-13483816 Msa1010410:CDS 40.0%
! ATCTGAAATTCCATCCGGTA+TGG + chr7_1:13483814-13483833 None:intergenic 40.0%
ATACCGGATGGAATTTCAGA+TGG - chr7_1:13483813-13483832 Msa1010410:CDS 40.0%
! ACTCCATCTGAAATTCCATC+CGG + chr7_1:13483819-13483838 None:intergenic 40.0%
!! ACTGGTAAGGTTAGCTTTAC+TGG - chr7_1:13483876-13483895 Msa1010410:CDS 40.0%
TCTCGTGTGTTTGTTCAAGA+AGG - chr7_1:13484074-13484093 Msa1010410:CDS 40.0%
CTAAAGTTCAACAAGGTCCT+CGG - chr7_1:13484168-13484187 Msa1010410:CDS 40.0%
TAAAGTTCAACAAGGTCCTC+GGG - chr7_1:13484169-13484188 Msa1010410:CDS 40.0%
ATTGAGCATGGACAGAAAGA+TGG - chr7_1:13484227-13484246 Msa1010410:CDS 40.0%
CTCATCTTGTGTTGTATGCA+TGG + chr7_1:13484336-13484355 None:intergenic 40.0%
TGAGATATTTGGCCCTGTAA+TGG - chr7_1:13484352-13484371 Msa1010410:CDS 40.0%
! ACTTCATGAGTGCCATTACA+GGG + chr7_1:13484367-13484386 None:intergenic 40.0%
! AACTTCATGAGTGCCATTAC+AGG + chr7_1:13484368-13484387 None:intergenic 40.0%
! ATATAGCAAGCACCGTATCA+AGG - chr7_1:13484468-13484487 Msa1010410:CDS 40.0%
TGTTCGAATGGACCTTGATA+CGG + chr7_1:13484483-13484502 None:intergenic 40.0%
! AGAGTCTATACTTCTGGAGA+CGG + chr7_1:13483542-13483561 None:intergenic 40.0%
! CTTGAAAACAGAAGGTGCAA+TGG - chr7_1:13483693-13483712 Msa1010410:CDS 40.0%
! ACAGAAGGTGCAATGGTATT+CGG - chr7_1:13483700-13483719 Msa1010410:CDS 40.0%
TCAAGCACAAAGAAACAACC+TGG - chr7_1:13483723-13483742 Msa1010410:CDS 40.0%
GGAAGATAAGTGTTTGTTCC+AGG + chr7_1:13483744-13483763 None:intergenic 40.0%
GAGTTCGTTAAAGACCATAC+CGG - chr7_1:13483797-13483816 Msa1010410:CDS 40.0%
! ATCTGAAATTCCATCCGGTA+TGG + chr7_1:13483814-13483833 None:intergenic 40.0%
ATACCGGATGGAATTTCAGA+TGG - chr7_1:13483813-13483832 Msa1010410:CDS 40.0%
! ACTCCATCTGAAATTCCATC+CGG + chr7_1:13483819-13483838 None:intergenic 40.0%
!! ACTGGTAAGGTTAGCTTTAC+TGG - chr7_1:13483876-13483895 Msa1010410:CDS 40.0%
TCTCGTGTGTTTGTTCAAGA+AGG - chr7_1:13484074-13484093 Msa1010410:CDS 40.0%
CTAAAGTTCAACAAGGTCCT+CGG - chr7_1:13484168-13484187 Msa1010410:CDS 40.0%
TAAAGTTCAACAAGGTCCTC+GGG - chr7_1:13484169-13484188 Msa1010410:CDS 40.0%
ATTGAGCATGGACAGAAAGA+TGG - chr7_1:13484227-13484246 Msa1010410:CDS 40.0%
CTCATCTTGTGTTGTATGCA+TGG + chr7_1:13484336-13484355 None:intergenic 40.0%
TGAGATATTTGGCCCTGTAA+TGG - chr7_1:13484352-13484371 Msa1010410:CDS 40.0%
! ACTTCATGAGTGCCATTACA+GGG + chr7_1:13484367-13484386 None:intergenic 40.0%
! AACTTCATGAGTGCCATTAC+AGG + chr7_1:13484368-13484387 None:intergenic 40.0%
! ATATAGCAAGCACCGTATCA+AGG - chr7_1:13484468-13484487 Msa1010410:CDS 40.0%
TGTTCGAATGGACCTTGATA+CGG + chr7_1:13484483-13484502 None:intergenic 40.0%
TGGAGAAGATAGACTACAGC+TGG - chr7_1:13483269-13483288 Msa1010410:CDS 45.0%
TGAAAAGCTGACATGGGAGA+AGG - chr7_1:13483509-13483528 Msa1010410:CDS 45.0%
TCGTTAAAGACCATACCGGA+TGG - chr7_1:13483801-13483820 Msa1010410:CDS 45.0%
CTCGATGTAGTACCTGGATT+TGG - chr7_1:13483840-13483859 Msa1010410:CDS 45.0%
CCTCCTAATTCAAGTGAAGC+TGG + chr7_1:13483951-13483970 None:intergenic 45.0%
CCAGCTTCACTTGAATTAGG+AGG - chr7_1:13483948-13483967 Msa1010410:CDS 45.0%
! TAGTGGACAAAGCAAGAGCT+TGG - chr7_1:13484123-13484142 Msa1010410:CDS 45.0%
AGTGGACAAAGCAAGAGCTT+GGG - chr7_1:13484124-13484143 Msa1010410:CDS 45.0%
CGAGGACCTTGTTGAACTTT+AGG + chr7_1:13484170-13484189 None:intergenic 45.0%
GATGGAGTAACTCTTTCGAC+AGG - chr7_1:13484245-13484264 Msa1010410:CDS 45.0%
ATGCATGGCCTCCTTAACAT+TGG + chr7_1:13484321-13484340 None:intergenic 45.0%
TGGAGAAGATAGACTACAGC+TGG - chr7_1:13483269-13483288 Msa1010410:CDS 45.0%
TGAAAAGCTGACATGGGAGA+AGG - chr7_1:13483509-13483528 Msa1010410:CDS 45.0%
TCGTTAAAGACCATACCGGA+TGG - chr7_1:13483801-13483820 Msa1010410:CDS 45.0%
CTCGATGTAGTACCTGGATT+TGG - chr7_1:13483840-13483859 Msa1010410:CDS 45.0%
CCTCCTAATTCAAGTGAAGC+TGG + chr7_1:13483951-13483970 None:intergenic 45.0%
CCAGCTTCACTTGAATTAGG+AGG - chr7_1:13483948-13483967 Msa1010410:CDS 45.0%
! TAGTGGACAAAGCAAGAGCT+TGG - chr7_1:13484123-13484142 Msa1010410:CDS 45.0%
AGTGGACAAAGCAAGAGCTT+GGG - chr7_1:13484124-13484143 Msa1010410:CDS 45.0%
CGAGGACCTTGTTGAACTTT+AGG + chr7_1:13484170-13484189 None:intergenic 45.0%
GATGGAGTAACTCTTTCGAC+AGG - chr7_1:13484245-13484264 Msa1010410:CDS 45.0%
ATGCATGGCCTCCTTAACAT+TGG + chr7_1:13484321-13484340 None:intergenic 45.0%
AAAGCTGACATGGGAGAAGG+CGG - chr7_1:13483512-13483531 Msa1010410:CDS 50.0%
! TCTATACTTCTGGAGACGGC+TGG + chr7_1:13483538-13483557 None:intergenic 50.0%
! GGAGTACTCGATGTAGTACC+TGG - chr7_1:13483834-13483853 Msa1010410:CDS 50.0%
! TTTGGTGCAACTGCAGGAAC+TGG - chr7_1:13483858-13483877 Msa1010410:CDS 50.0%
TGCAACTGCAGGAACTGGTA+AGG - chr7_1:13483863-13483882 Msa1010410:CDS 50.0%
AAAGCAAGAGCTTGGGCTGT+TGG - chr7_1:13484131-13484150 Msa1010410:CDS 50.0%
AATTTCCTCTTGTCAGCCCG+AGG + chr7_1:13484188-13484207 None:intergenic 50.0%
AAAGCTGACATGGGAGAAGG+CGG - chr7_1:13483512-13483531 Msa1010410:CDS 50.0%
! TCTATACTTCTGGAGACGGC+TGG + chr7_1:13483538-13483557 None:intergenic 50.0%
! GGAGTACTCGATGTAGTACC+TGG - chr7_1:13483834-13483853 Msa1010410:CDS 50.0%
! TTTGGTGCAACTGCAGGAAC+TGG - chr7_1:13483858-13483877 Msa1010410:CDS 50.0%
TGCAACTGCAGGAACTGGTA+AGG - chr7_1:13483863-13483882 Msa1010410:CDS 50.0%
AAAGCAAGAGCTTGGGCTGT+TGG - chr7_1:13484131-13484150 Msa1010410:CDS 50.0%
AATTTCCTCTTGTCAGCCCG+AGG + chr7_1:13484188-13484207 None:intergenic 50.0%
CCTGCAGTTGCACCAAATCC+AGG + chr7_1:13483855-13483874 None:intergenic 55.0%
!! CCTGGATTTGGTGCAACTGC+AGG - chr7_1:13483852-13483871 Msa1010410:CDS 55.0%
CCTGCAGTTGCACCAAATCC+AGG + chr7_1:13483855-13483874 None:intergenic 55.0%
!! CCTGGATTTGGTGCAACTGC+AGG - chr7_1:13483852-13483871 Msa1010410:CDS 55.0%
AAGGTCCTCGGGCTGACAAG+AGG - chr7_1:13484180-13484199 Msa1010410:CDS 60.0%
AAGGTCCTCGGGCTGACAAG+AGG - chr7_1:13484180-13484199 Msa1010410:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 13483243 13484505 13483243 ID=Msa1010410;Name=Msa1010410
chr7_1 mRNA 13483243 13484505 13483243 ID=Msa1010410-mRNA-1;Parent=Msa1010410;Name=Msa1010410-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|420
chr7_1 exon 13483243 13484505 13483243 ID=Msa1010410-mRNA-1:exon:3419;Parent=Msa1010410-mRNA-1
chr7_1 CDS 13483243 13484505 13483243 ID=Msa1010410-mRNA-1:cds;Parent=Msa1010410-mRNA-1
Gene Sequence

>Msa1010410

ATGAGTTTCTACAAGAATGAAGTTGGTGGAGAAGATAGACTACAGCTGGATGAAATTATTGATGAATGTAAAACCTACTTTGCTGGAAAAGATACAACATCTAACTTGTTAACTTGGGCACTTCTTCTATTAGCAAAATATCAAGAATGGCAAAGTAAGACACGTGAAGAAATTGATGGGAGTACTAGAGAAGAAATTGAAAAGAGGGTTAATCAATTAGGCATTGACAAGGCTGTACCGAAAAAGATTCTTGAACTGATGAATGTTGAAAAGCTGACATGGGAGAAGGCGGCCAGCCGTCTCCAGAAGTATAGACTCTATCTAAAAAAAGTTAGTTGTGTGGAAAACAAACAAGATCATATGGAAGCAGCCTTAACTAGTAGTTCAGATGCATCCTATTTAAGAAGTGGAGTTGGAGGACATTTGCATACATTGAATCGCTATACTTTACTTGAAAACAGAAGGTGCAATGGTATTCGGTCAAGCACAAAGAAACAACCTGGAACAAACACTTATCTTCCAAGAGAATCTATTAACCATGTTGATATTAAGGAGAGTTCGTTAAAGACCATACCGGATGGAATTTCAGATGGAGTACTCGATGTAGTACCTGGATTTGGTGCAACTGCAGGAACTGGTAAGGTTAGCTTTACTGGTTCAACAAGACGTGAAATAATGGTATCTGCAGCTAGAAGTAATTTGAAACCAGCTTCACTTGAATTAGGAGGAAAATCACCCCTCTTAATTTTTTATAATGCTGATGTTGATAAAGCTGTTAAACTTGCTCTCATTAGCATCGTATTTAACAAGGGAGAAATTTGTGTTGCGAGTTCTCGTGTGTTTGTTCAAGAAGGAATCTATGATGAATTTGAGAAGATGTTAGTGGACAAAGCAAGAGCTTGGGCTGTTGGTGATCCTTTTGATCCTAAAGTTCAACAAGGTCCTCGGGCTGACAAGAGGAAATTTGAAAAAATTCTTTCATATATTGAGCATGGACAGAAAGATGGAGTAACTCTTTCGACAGGTAGTAAAAAAATTGGAGACAAGAGTTACTACAATGAGCCTACAATTTTCTCCAATGTTAAGGAGGCCATGCATACAACACAAGATGAGATATTTGGCCCTGTAATGGCACTCATGAAGTTCAAGACTATTGGAAAAGCCATCAGAAGTGCCAACAATAAAAGATATGGCTTAGGAGCAGTAATTGTGACAAAGAATTTGGATATAGCAAGCACCGTATCAAGGTCCATTCGAACATGA

Protein sequence

>Msa1010410

MSFYKNEVGGEDRLQLDEIIDECKTYFAGKDTTSNLLTWALLLLAKYQEWQSKTREEIDGSTREEIEKRVNQLGIDKAVPKKILELMNVEKLTWEKAASRLQKYRLYLKKVSCVENKQDHMEAALTSSSDASYLRSGVGGHLHTLNRYTLLENRRCNGIRSSTKKQPGTNTYLPRESINHVDIKESSLKTIPDGISDGVLDVVPGFGATAGTGKVSFTGSTRREIMVSAARSNLKPASLELGGKSPLLIFYNADVDKAVKLALISIVFNKGEICVASSRVFVQEGIYDEFEKMLVDKARAWAVGDPFDPKVQQGPRADKRKFEKILSYIEHGQKDGVTLSTGSKKIGDKSYYNEPTIFSNVKEAMHTTQDEIFGPVMALMKFKTIGKAIRSANNKRYGLGAVIVTKNLDIASTVSRSIRT*