AlfalfaGEDB | Msa1010980

M. sativa cultivar zhongmu-4 / Msa1010980

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010980	XP_013450231.1	83.779	524	64	4	1	524	1	503	0.0	836

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010980	sp\|Q7XJK8\|PHE2_ARATH	28.731	268	162	7	6	264	2	249	9.02e-20	92.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010980	A0A072U3F6	83.779	524	64	4	1	524	1	503	0.0	836

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TFs/TRs:

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Gene ID	Type	Classification
Msa1010980	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010980	MtrunA17_Chr7g0267601	83.779	524	64	4	1	524	1	503	0.0	836
Msa1010980	MtrunA17_Chr4g0008701	83.015	524	84	2	1	524	1	519	0.0	827
Msa1010980	MtrunA17_Chr3g0128721	43.814	582	257	11	1	524	1	570	2.30e-131	394
Msa1010980	MtrunA17_Chr8g0361741	52.734	256	117	1	13	268	13	264	3.25e-70	226
Msa1010980	MtrunA17_Chr3g0107381	33.333	165	106	2	1	164	1	162	3.14e-24	100
Msa1010980	MtrunA17_Chr5g0432691	32.051	156	106	0	7	162	4	159	1.98e-22	94.0
Msa1010980	MtrunA17_Chr8g0351751	37.405	131	80	1	4	132	1	131	5.51e-22	95.1
Msa1010980	MtrunA17_Chr3g0107331	34.000	150	98	1	6	154	2	151	2.28e-21	90.9
Msa1010980	MtrunA17_Chr4g0014321	35.246	122	79	0	6	127	3	124	3.36e-21	92.4
Msa1010980	MtrunA17_Chr3g0107351	31.373	153	104	1	6	157	2	154	3.21e-20	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1010980	AT1G65300.1	28.731	268	162	7	6	264	2	249	9.17e-21	92.8
Msa1010980	AT2G40210.1	28.313	166	116	2	4	169	1	163	3.87e-19	89.7
Msa1010980	AT3G05860.3	31.387	137	90	2	1	136	1	134	9.58e-17	80.5
Msa1010980	AT3G05860.1	31.387	137	90	2	1	136	1	134	1.09e-16	80.5
Msa1010980	AT3G05860.2	31.387	137	90	2	1	136	1	134	2.17e-16	78.6
Msa1010980	AT5G26650.1	31.579	114	78	0	7	120	2	115	5.66e-16	80.1
Msa1010980	AT5G27960.1	31.579	114	78	0	7	120	2	115	1.57e-15	78.2
Msa1010980	AT1G31630.1	32.174	115	77	1	6	120	2	115	4.59e-15	77.0
Msa1010980	AT5G06500.1	28.767	146	103	1	4	149	1	145	4.64e-15	75.5
Msa1010980	AT1G65330.1	32.743	113	76	0	8	120	4	116	7.90e-15	75.5

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Find 99 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATATTGGTGCCAACGT+TGG	0.577514	7_1:+14619670	None:intergenic
AAAGTTGACAAAATGACCAG+TGG	0.664405	7_1:-14619559	Msa1010980:CDS
AACAAATTTGATGATGGCAT+GGG	0.594149	7_1:-14619430	Msa1010980:CDS
AACAATATAGGTAGCAATAT+TGG	0.211965	7_1:-14619247	Msa1010980:CDS
AACACACCTACACCACCACT+AGG	0.650603	7_1:+14619205	None:intergenic
AATATGGCCATCTCCTACGG+TGG	0.571701	7_1:-14620004	Msa1010980:CDS
ACAACATAGATAGCAACATG+TGG	0.691102	7_1:-14619018	Msa1010980:CDS
ACAATATAGGTAGCAATATT+GGG	0.381596	7_1:-14619246	Msa1010980:CDS
ACACCATGATTTGTATGTGG+TGG	0.720749	7_1:+14618884	None:intergenic
ACATCACATGAAAATCATAG+TGG	0.625105	7_1:-14619319	Msa1010980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGATACAAAACCATCAATA+TGG	-	chr7_1:14618788-14618807	Msa1010980:CDS	30.0%
TTGACTCATACTTGGTTATT+AGG	+	chr7_1:14618837-14618856	None:intergenic	30.0%
ATGCATCAAATTGAAAACGA+AGG	-	chr7_1:14618985-14619004	Msa1010980:CDS	30.0%
GTTATCAAAATCGCCAAAAT+CGG	+	chr7_1:14619361-14619380	None:intergenic	30.0%
ACATCACATGAAAATCATAG+TGG	-	chr7_1:14619489-14619508	Msa1010980:CDS	30.0%
GTGATACAAAACCATCAATA+TGG	-	chr7_1:14618788-14618807	Msa1010980:CDS	30.0%
TTGACTCATACTTGGTTATT+AGG	+	chr7_1:14618837-14618856	None:intergenic	30.0%
ATGCATCAAATTGAAAACGA+AGG	-	chr7_1:14618985-14619004	Msa1010980:CDS	30.0%
GTTATCAAAATCGCCAAAAT+CGG	+	chr7_1:14619361-14619380	None:intergenic	30.0%
ACATCACATGAAAATCATAG+TGG	-	chr7_1:14619489-14619508	Msa1010980:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	14618628	14620202	14618628	ID=Msa1010980;Name=Msa1010980
chr7_1	mRNA	14618628	14620202	14618628	ID=Msa1010980-mRNA-1;Parent=Msa1010980;Name=Msa1010980-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|524
chr7_1	exon	14618628	14620202	14618628	ID=Msa1010980-mRNA-1:exon:3790;Parent=Msa1010980-mRNA-1
chr7_1	CDS	14618628	14620202	14618628	ID=Msa1010980-mRNA-1:cds;Parent=Msa1010980-mRNA-1

Gene Sequence

>Msa1010980

ATGACTAGAATCAAAAAAAAGAAGATCACATCCAAATTGATTGAGAATAATACTCAAAGAAAGGCGCGTTATAAGAAAAGATTGAAAGGGTTGTTCACCAAAATGGAGCAGGTGACAATCTTATGTGGAATTGAGGCATGTGCGGTTGTGTTTGGGCCAGGTGATACAAAACCATCAATATGGCCATCTCCTACGGTGGCTGAAGACCTAATAACCAAGTATGAGTCAATGTCATTGGATGTACAATCGAAAAATAAGACTGACCAATTGACTTTTTTGAAGGATAAGGGCAAAAAACTTGAAGCAAGCCTTGCAAAGATCGAAAAAGAAAATGAAGAGACTTTAATGGGAGCTTATATGCATCAAATTGAAAACGAAGGTAAGTCTTTAGATGATTTTGATCATGATGTGCTGAATCGTTTGATTGCTTTTACACTTGAAAAAATTAAGATCACTAGAAAGATGTCTAGGCATTTAGAAAAGGAGATCTTGCCTCTTAATAATCCTTCTCCAACGTTGGCACCAATATCTTTTACTTTAGAAGATGGTGGTGGGGTACAATCTGGGGTTAACATGTATGGACATGTTTTGAACCAACAACCCTTGTTAGATTTGGTCGAGAAAGTTGACAAAATGACCAGTGGTTTCAATAACAACCATGGAAGTAGCATGAAGATACCTCCACTAACAGATCTTAGTGGTGGTGGTTGTGATAACTTGGCTAATCAAGCCGATTTTGGCGATTTTGATAACAAATTTGATGATGGCATGGGAATACCATCACCTGAAAATTCTAGTGGTGGTTTTTATGCAGCGTTTTTTCAAGATAATTTGCAAGATTTTGATAGTATCATGGAGATAACATCACATGAAAATCATAGTGGTAGTGTTCATGATATGTTTCTTCCTCGTGGAAATCGGGGGAATTTTATTAACAATATAGGTAGCAATATTGGGATACAATCACATGAAAATCCTAGTGGTGGTGTAGGTGTGTTGCCTCCTCAAGGATATTTTGGAGGTCAAAGCAACTTTCAAGGTTTTGATGACATTACAGGTAGCAATACAAGGATACTACCACATGCAAATCTGAATGAGAATGTTGATTTGTTGCCTCCTCAAGAAAATTTTGAAGATCAAGAAAACTTTGGAGGTTTTGATGACAACATAGATAGCAACATGTGGATACAACATGCAAATTTTAGTGGTGGTGATACATTGCTTCCTCAAGAAAATTTTGGAGACCGATTTAACTTTGAAGATTTTGATAACAACACAGGTAGCAACATGTTGATACCACCACATACAAATCATGGTGTTGGTAATGTTGATGTTTTGTCTCATCAAAGAAATTTTGAAGTTCAGAAAAACTTTGGAGGTTTTGATGATGATACATGTAGCAACATGTGGAAACCTCCACATGAAAATCCAAGCAATGGTGGTGTTGATATGATGACTTTTCATCAAAACAATTTTGGCGGCAATATTAATGGAGATGGGATGCGGAGTTTTAATGCGAACTTTGTTGACAATAATTACAGGAACAACTTCAACCCTGGATTTCCTTCAGAATAA

Protein sequence

>Msa1010980

MTRIKKKKITSKLIENNTQRKARYKKRLKGLFTKMEQVTILCGIEACAVVFGPGDTKPSIWPSPTVAEDLITKYESMSLDVQSKNKTDQLTFLKDKGKKLEASLAKIEKENEETLMGAYMHQIENEGKSLDDFDHDVLNRLIAFTLEKIKITRKMSRHLEKEILPLNNPSPTLAPISFTLEDGGGVQSGVNMYGHVLNQQPLLDLVEKVDKMTSGFNNNHGSSMKIPPLTDLSGGGCDNLANQADFGDFDNKFDDGMGIPSPENSSGGFYAAFFQDNLQDFDSIMEITSHENHSGSVHDMFLPRGNRGNFINNIGSNIGIQSHENPSGGVGVLPPQGYFGGQSNFQGFDDITGSNTRILPHANLNENVDLLPPQENFEDQENFGGFDDNIDSNMWIQHANFSGGDTLLPQENFGDRFNFEDFDNNTGSNMLIPPHTNHGVGNVDVLSHQRNFEVQKNFGGFDDDTCSNMWKPPHENPSNGGVDMMTFHQNNFGGNINGDGMRSFNANFVDNNYRNNFNPGFPSE*