AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1012820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012820 MtrunA17_Chr7g0224271 98.373 676 9 1 1 676 1 674 0.0 1381
Msa1012820 MtrunA17_Chr4g0057891 41.604 399 211 6 290 676 133 521 1.71e-96 307
Msa1012820 MtrunA17_Chr8g0376381 41.895 401 191 10 286 675 153 522 1.78e-94 302
Msa1012820 MtrunA17_Chr2g0306641 42.250 400 190 10 292 676 115 488 3.20e-93 298
Msa1012820 MtrunA17_Chr3g0110971 35.878 524 268 13 186 675 98 587 5.53e-93 300
Msa1012820 MtrunA17_Chr7g0245601 41.910 377 186 6 306 675 442 792 1.81e-92 304
Msa1012820 MtrunA17_Chr8g0357601 40.863 394 206 6 294 675 174 552 3.77e-88 286
Msa1012820 MtrunA17_Chr5g0447691 40.204 393 205 5 295 675 170 544 4.60e-88 285
Msa1012820 MtrunA17_Chr4g0057291 38.303 389 217 7 296 674 286 661 5.52e-82 273
Msa1012820 MtrunA17_Chr1g0159461 39.589 389 201 6 301 675 224 592 7.63e-81 268
Msa1012820 MtrunA17_Chr2g0319091 36.490 433 239 5 260 674 164 578 5.61e-79 262
Msa1012820 MtrunA17_Chr4g0038761 38.710 372 209 6 306 675 88 442 2.61e-78 257
Msa1012820 MtrunA17_Chr3g0101141 32.734 556 296 10 164 675 21 542 4.14e-78 259
Msa1012820 MtrunA17_Chr5g0445331 33.406 461 267 7 235 675 92 532 9.16e-78 258
Msa1012820 MtrunA17_Chr3g0125811 37.887 388 209 5 301 675 202 570 2.90e-76 255
Msa1012820 MtrunA17_Chr4g0076091 35.878 393 221 5 297 676 170 544 3.64e-71 241
Msa1012820 MtrunA17_Chr2g0290241 33.666 401 219 8 297 676 52 426 4.94e-69 231
Msa1012820 MtrunA17_Chr4g0031721 34.000 400 234 6 288 674 301 683 3.23e-65 228
Msa1012820 MtrunA17_Chr1g0183641 35.128 390 224 10 292 676 113 478 7.87e-65 222
Msa1012820 MtrunA17_Chr5g0424131 36.930 417 210 17 290 676 107 500 1.59e-64 222
Msa1012820 MtrunA17_Chr1g0200401 34.140 413 220 14 292 675 70 459 6.96e-64 219
Msa1012820 MtrunA17_Chr3g0114841 37.101 407 219 14 292 676 110 501 2.01e-63 219
Msa1012820 MtrunA17_Chr3g0085681 30.140 428 227 5 303 675 26 436 8.87e-62 212
Msa1012820 MtrunA17_Chr7g0238891 32.398 392 234 5 297 675 367 740 4.35e-59 212
Msa1012820 MtrunA17_Chr4g0031701 31.910 398 234 5 293 672 245 623 9.29e-59 209
Msa1012820 MtrunA17_Chr4g0031731 31.910 398 234 5 293 672 245 623 1.30e-57 206
Msa1012820 MtrunA17_Chr2g0328391 31.807 393 237 6 296 674 293 668 1.11e-56 204
Msa1012820 MtrunA17_Chr4g0031741 31.714 391 234 7 297 674 279 649 1.65e-56 203
Msa1012820 MtrunA17_Chr2g0328341 30.848 389 240 6 297 674 267 637 2.11e-56 202
Msa1012820 MtrunA17_Chr4g0031711 31.671 401 237 7 292 674 351 732 1.99e-55 201
Msa1012820 MtrunA17_Chr2g0328381 30.334 389 242 6 297 674 270 640 7.92e-55 198
Msa1012820 MtrunA17_Chr2g0328411 29.771 393 242 5 295 674 282 653 4.19e-54 197
Msa1012820 MtrunA17_Chr2g0328431 30.227 397 235 8 295 674 282 653 1.59e-51 189
Msa1012820 MtrunA17_Chr4g0039661 33.962 371 208 8 318 675 209 555 1.15e-50 185
Msa1012820 MtrunA17_Chr2g0294461 31.514 403 248 9 288 675 196 585 2.31e-49 182
Msa1012820 MtrunA17_Chr3g0085361 30.747 348 181 5 383 675 8 350 2.73e-48 173
Msa1012820 MtrunA17_Chr5g0401131 30.923 401 240 11 295 675 107 490 7.34e-48 176
Msa1012820 MtrunA17_Chr2g0294471 29.703 404 251 11 288 675 190 576 1.66e-46 174
Msa1012820 MtrunA17_Chr2g0328401 27.933 358 226 5 297 642 285 622 5.44e-45 170
Msa1012820 MtrunA17_Chr2g0328361 28.093 388 227 7 297 674 269 614 1.80e-44 168
Msa1012820 MtrunA17_Chr7g0270031 29.723 397 253 9 288 675 175 554 3.29e-44 167
Msa1012820 MtrunA17_Chr8g0383981 32.426 404 221 15 289 674 126 495 4.70e-42 159
Msa1012820 MtrunA17_Chr2g0328371 34.286 245 150 4 389 622 1 245 3.57e-41 150
Msa1012820 MtrunA17_Chr1g0194621 28.571 406 265 11 285 675 123 518 4.96e-41 157
Msa1012820 MtrunA17_Chr5g0396491 36.797 231 124 2 291 518 45 256 7.41e-40 153
Msa1012820 MtrunA17_Chr5g0396491 43.624 149 84 0 527 675 330 478 5.55e-39 150
Msa1012820 MtrunA17_Chr4g0038851 44.595 148 82 0 528 675 322 469 1.76e-39 151
Msa1012820 MtrunA17_Chr4g0038851 35.088 228 132 2 291 518 37 248 1.04e-34 137
Msa1012820 MtrunA17_Chr7g0236851 34.007 297 175 8 394 674 365 656 1.37e-38 152
Msa1012820 MtrunA17_Chr7g0230771 29.124 388 238 11 299 676 372 732 7.96e-36 144
Msa1012820 MtrunA17_Chr7g0230731 29.124 388 238 11 299 676 369 729 4.60e-35 142
Msa1012820 MtrunA17_Chr6g0468561 29.383 405 216 13 303 675 296 662 4.42e-34 138
Msa1012820 MtrunA17_Chr2g0329591 26.329 395 253 10 302 675 74 451 6.75e-33 132
Msa1012820 MtrunA17_Chr4g0053901 25.714 420 254 9 302 674 59 467 1.53e-32 131
Msa1012820 MtrunA17_Chr4g0012071 28.238 386 235 12 303 676 197 552 5.63e-32 130
Msa1012820 MtrunA17_Chr5g0401421 25.592 422 254 12 302 674 35 445 3.21e-31 127
Msa1012820 MtrunA17_Chr8g0373561 27.226 393 242 14 299 676 179 542 7.98e-29 121
Msa1012820 MtrunA17_Chr8g0344101 23.587 407 251 12 301 675 222 600 1.93e-19 92.8
Msa1012820 MtrunA17_Chr2g0323111 26.286 175 120 3 507 674 133 305 4.69e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012820 AT1G66350.1 44.103 390 184 11 293 676 146 507 1.35e-97 310
Msa1012820 AT3G03450.1 42.092 392 198 8 293 675 174 545 4.08e-95 304
Msa1012820 AT3G54220.1 41.709 398 196 6 287 674 278 649 1.12e-92 301
Msa1012820 AT1G14920.1 40.712 393 197 9 293 675 163 529 3.99e-90 291
Msa1012820 AT5G17490.1 42.967 391 190 10 293 675 151 516 2.29e-89 288
Msa1012820 AT2G01570.1 40.458 393 198 10 293 675 215 581 3.53e-87 285
Msa1012820 AT5G41920.1 40.759 395 202 9 289 675 30 400 2.01e-86 277
Msa1012820 AT2G04890.1 39.949 393 209 5 289 675 42 413 7.01e-84 271
Msa1012820 AT5G48150.1 39.481 385 204 5 303 675 123 490 5.96e-83 271
Msa1012820 AT5G48150.4 39.481 385 204 5 303 675 123 490 5.96e-83 271
Msa1012820 AT5G48150.2 39.481 385 204 5 303 675 123 490 5.96e-83 271
Msa1012820 AT5G48150.3 39.481 385 204 5 303 675 123 490 5.96e-83 271
Msa1012820 AT1G50600.3 38.560 389 209 6 299 675 156 526 2.03e-73 246
Msa1012820 AT1G50600.1 39.075 389 207 7 299 675 227 597 5.62e-73 247
Msa1012820 AT1G50600.2 39.075 389 207 7 299 675 231 601 8.02e-73 247
Msa1012820 AT1G21450.1 36.434 387 217 4 301 675 224 593 2.83e-72 245
Msa1012820 AT1G55580.1 37.438 406 226 8 298 675 40 445 1.51e-71 239
Msa1012820 AT4G17230.1 36.061 391 220 4 297 675 153 525 5.26e-68 232
Msa1012820 AT4G17230.2 36.061 391 220 4 297 675 153 525 5.26e-68 232
Msa1012820 AT1G63100.1 34.596 396 227 7 297 674 247 628 4.14e-67 232
Msa1012820 AT1G63100.2 34.596 396 227 7 297 674 272 653 7.31e-67 232
Msa1012820 AT1G07520.2 31.762 403 245 8 288 674 140 528 6.36e-59 207
Msa1012820 AT1G07520.4 31.762 403 245 8 288 674 140 528 6.36e-59 207
Msa1012820 AT1G07520.3 31.592 402 247 7 288 674 305 693 2.28e-58 209
Msa1012820 AT1G07520.1 31.592 402 247 7 288 674 304 692 2.33e-58 209
Msa1012820 AT3G46600.1 30.326 399 246 5 290 675 200 579 3.65e-57 204
Msa1012820 AT5G59450.1 29.442 394 246 6 297 675 222 598 4.78e-57 204
Msa1012820 AT3G46600.3 30.326 399 246 5 290 675 168 547 8.57e-57 202
Msa1012820 AT3G46600.2 30.670 388 237 5 301 675 3 371 3.92e-56 196
Msa1012820 AT1G07530.1 31.538 390 235 6 299 674 393 764 2.84e-55 202
Msa1012820 AT2G29065.1 29.820 389 244 7 302 674 252 627 1.16e-54 198
Msa1012820 AT5G66770.1 35.038 391 217 10 299 675 217 584 1.53e-53 194
Msa1012820 AT2G29060.2 30.612 392 238 7 299 674 281 654 8.24e-53 193
Msa1012820 AT2G29060.1 30.612 392 238 7 299 674 318 691 1.24e-52 193
Msa1012820 AT2G37650.2 30.827 399 229 7 297 675 330 701 1.57e-52 193
Msa1012820 AT2G37650.1 31.078 399 228 8 297 675 342 713 1.95e-52 193
Msa1012820 AT4G08250.1 32.432 407 228 14 290 674 95 476 3.91e-49 179
Msa1012820 AT3G50650.1 33.962 371 205 9 322 675 195 542 6.06e-46 172
Msa1012820 AT4G37650.1 29.397 398 243 10 302 675 146 529 2.79e-43 164
Msa1012820 AT5G52510.1 30.250 400 224 9 303 675 269 640 6.44e-40 156
Msa1012820 AT1G50420.1 45.333 150 82 0 527 676 331 480 6.67e-39 150
Msa1012820 AT1G50420.1 38.496 226 125 2 293 518 48 259 5.96e-38 147
Msa1012820 AT3G49950.1 28.678 401 237 10 301 674 29 407 5.93e-33 132
Msa1012820 AT2G45160.1 27.829 327 204 9 369 676 327 640 2.03e-28 121
Msa1012820 AT4G00150.1 27.431 401 238 13 284 676 200 555 2.76e-28 120
Msa1012820 AT4G36710.1 26.884 398 256 11 289 675 112 485 5.49e-28 118
Msa1012820 AT3G60630.1 28.852 305 191 10 390 676 327 623 1.05e-27 119
Msa1012820 AT3G13840.1 24.557 395 245 14 302 675 148 510 1.78e-14 77.0

Find 164 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCCAATATCAACAATTT+TGG 0.134391 7_1:+18302537 Msa1012820:CDS
TGTTGCATATATTGATTATT+TGG 0.203768 7_1:-18302406 None:intergenic
GTAGAAGCTTGTGGTGAATT+AGG 0.209436 7_1:-18302226 None:intergenic
TGTATTCATGTGATGGTTAT+AGG 0.213345 7_1:+18304321 Msa1012820:CDS
CTATCCAAAATTGTTGATAT+TGG 0.238972 7_1:-18302541 None:intergenic
AATAGTAATAATCAACAAAA+AGG 0.242712 7_1:+18302346 Msa1012820:CDS
TGCTTCAAACGCCTCGAAAA+TGG 0.246534 7_1:-18303628 None:intergenic
GACTCAATCAAGGATATTAT+TGG 0.253341 7_1:+18304295 Msa1012820:CDS
GGCATGAGAGGTTGGAGAAA+TGG 0.280692 7_1:+18304216 Msa1012820:CDS
GATGGTAAGTTTAGGCTTTG+TGG 0.292426 7_1:-18302073 None:intergenic
GTTAGGGTTAATGTTTCTAA+TGG 0.293041 7_1:-18302203 None:intergenic
TAGAAGCTTGTGGTGAATTA+GGG 0.297220 7_1:-18302225 None:intergenic
GGCAAGCCTGGTAGACAATT+TGG 0.300466 7_1:-18303569 None:intergenic
CTTGATTGAGTCACTGCATT+AGG 0.311878 7_1:-18304284 None:intergenic
GTATCATCAAATGGGATCTA+TGG 0.314373 7_1:+18302669 Msa1012820:CDS
TCATGAAATCATTATCTAAA+TGG 0.317694 7_1:-18302171 None:intergenic
TCTCTCAAATTTGACTTAGA+TGG 0.323118 7_1:+18302094 Msa1012820:CDS
AACCGTCTCCACCGTGTTCC+TGG 0.336032 7_1:+18303933 Msa1012820:CDS
ATTTGTTTGATTTGAAGAAT+TGG 0.347254 7_1:-18301987 None:intergenic
TTGACGATGACTTGGTTGTT+AGG 0.350400 7_1:-18303452 None:intergenic
CATCGACCTTGATATCCTTC+AGG 0.351187 7_1:+18303668 Msa1012820:CDS
ACTCAATCAAGGATATTATT+GGG 0.352700 7_1:+18304296 Msa1012820:CDS
TCTAAGAACTCTTCAATTGC+TGG 0.367894 7_1:-18302448 None:intergenic
GCTTGTGGTGAATTAGGGTT+AGG 0.379242 7_1:-18302220 None:intergenic
TATAGGTTAACTGAGGATAA+AGG 0.379685 7_1:+18304338 Msa1012820:CDS
ATAAAGGTTGTTTGTTGCTT+GGG 0.381702 7_1:+18304354 Msa1012820:CDS
GTCACTGCATTAGGACTTAG+AGG 0.385725 7_1:-18304275 None:intergenic
CTAACAGTTCCTATTCCAAT+TGG 0.386725 7_1:+18302772 Msa1012820:CDS
TGGTGCTTGGTCTCTTATCA+TGG 0.387315 7_1:-18303979 None:intergenic
GATAAAGGTTGTTTGTTGCT+TGG 0.388205 7_1:+18304353 Msa1012820:CDS
GATAGAGAGGCATGAGAGGT+TGG 0.388288 7_1:+18304208 Msa1012820:CDS
GCTTCCCACATTGAACTATC+TGG 0.392042 7_1:-18302136 None:intergenic
AGGACTTCCATAGGGTTTGA+TGG 0.398057 7_1:-18303537 None:intergenic
TCCTCAAGTTGTTCTCCAAC+GGG 0.400097 7_1:-18303852 None:intergenic
AATGCAAAGCCTCGAGAAAT+CGG 0.401833 7_1:-18304058 None:intergenic
GCCAATGCCTGCATGAATGC+AGG 0.402364 7_1:-18303702 None:intergenic
ATGCAAATTCAAAGCCTATC+AGG 0.406320 7_1:+18302283 Msa1012820:CDS
CACAAGCTTTACAACAAGAA+AGG 0.417444 7_1:+18302707 Msa1012820:CDS
ATTTGAGAGATGGTAAGTTT+AGG 0.417615 7_1:-18302081 None:intergenic
TTTGTTTGATTTGAAGAATT+GGG 0.419908 7_1:-18301986 None:intergenic
TTAGGGTTAATGTTTCTAAT+GGG 0.423047 7_1:-18302202 None:intergenic
CAGGCATTGGCTGCACGGCC+CGG 0.426882 7_1:+18303714 Msa1012820:CDS
GAGTGATATGTATCATCAAA+TGG 0.430639 7_1:+18302660 Msa1012820:CDS
TCCACAAGTGTCACTATGTT+TGG 0.431028 7_1:-18303999 None:intergenic
ATATATTTGCACCGGAGATT+CGG 0.433485 7_1:+18304156 Msa1012820:CDS
CTCGAAAATGGCTTGGTTAG+CGG 0.435294 7_1:-18303616 None:intergenic
GGCCGTGCATCGAATCAGTT+AGG 0.436845 7_1:+18303769 Msa1012820:CDS
TCATGCAGGCATTGGCTGCA+CGG 0.438295 7_1:+18303709 Msa1012820:CDS
CCGGAGGAAAGGAGCACCAC+CGG 0.441381 7_1:-18303733 None:intergenic
GGAGAAATGGAGGAAGATAA+TGG 0.442415 7_1:+18304229 Msa1012820:CDS
AAAATGATGAATTCACTTTG+TGG 0.443783 7_1:+18301929 None:intergenic
ATTACCTGCTCAATTCCAAT+TGG 0.449064 7_1:-18302787 None:intergenic
GTGTTCCTGGCAATCATCTC+GGG 0.453444 7_1:+18303946 Msa1012820:CDS
GCTACGATGTTCCGAATCTC+CGG 0.453601 7_1:-18304167 None:intergenic
ATCGAATCAGTTAGGGAAAC+CGG 0.454197 7_1:+18303777 Msa1012820:CDS
CAAAATTCTTCAAGCTATTG+TGG 0.454394 7_1:+18302574 Msa1012820:CDS
TAAATCACTACAAGAATTTG+TGG 0.454463 7_1:-18302029 None:intergenic
TGCTCAATTCCAATTGGAAT+AGG 0.456239 7_1:-18302781 None:intergenic
GGTCTCTTATCATGGACAAC+AGG 0.459964 7_1:-18303971 None:intergenic
AGCAAGAAGCAAGCCATAAC+GGG 0.462121 7_1:+18304021 Msa1012820:CDS
GCCCTTGGTGCTGATTCCAC+TGG 0.463860 7_1:-18304119 None:intergenic
CCGTGTAGGCGAGGCTTTGG+CGG 0.466492 7_1:+18303899 Msa1012820:CDS
CGTGTTCCTGGCAATCATCT+CGG 0.467483 7_1:+18303945 Msa1012820:CDS
ACATTGAACTATCTGGTGAT+TGG 0.469373 7_1:-18302129 None:intergenic
TACTGCTCCACCTTAGCCCT+TGG 0.470876 7_1:-18304134 None:intergenic
CTTGTGGTGAATTAGGGTTA+GGG 0.477041 7_1:-18302219 None:intergenic
AACACGGTGGAGACGGTTAA+CGG 0.479130 7_1:-18303928 None:intergenic
ATGAGAGGTTGGAGAAATGG+AGG 0.480103 7_1:+18304219 Msa1012820:CDS
CACTGGAAAAGTGGCGTCCA+AGG 0.485225 7_1:-18304102 None:intergenic
TATTCCAATTGGAATTGAGC+AGG 0.485481 7_1:+18302783 Msa1012820:CDS
TGACGATGACTTGGTTGTTA+GGG 0.486440 7_1:-18303451 None:intergenic
TTCCATAGGGTTTGATGGGA+AGG 0.488537 7_1:-18303532 None:intergenic
GCATTGGCTGCACGGCCCGG+TGG 0.490051 7_1:+18303717 Msa1012820:CDS
ATCGACCTTGATATCCTTCA+GGG 0.491571 7_1:+18303669 Msa1012820:CDS
GCCTGCATTCATGCAGGCAT+TGG 0.492416 7_1:+18303701 Msa1012820:CDS
GTGTCACTATGTTTGGTGCT+TGG 0.501545 7_1:-18303992 None:intergenic
CCGCCAAAGCCTCGCCTACA+CGG 0.501971 7_1:-18303899 None:intergenic
AGTGATATGTATCATCAAAT+GGG 0.505152 7_1:+18302661 Msa1012820:CDS
TACCTTCCCATCAAACCCTA+TGG 0.506323 7_1:+18303530 Msa1012820:CDS
TCCCTAACTGATTCGATGCA+CGG 0.507816 7_1:-18303771 None:intergenic
AGAGGATAGAGAGGCATGAG+AGG 0.511494 7_1:+18304204 Msa1012820:CDS
CCGGTGGTGCTCCTTTCCTC+CGG 0.515736 7_1:+18303733 Msa1012820:CDS
CAAACGCCTCGAAAATGGCT+TGG 0.518445 7_1:-18303623 None:intergenic
AAGGTGAGGAGAGGATAGAG+AGG 0.521365 7_1:+18304195 Msa1012820:CDS
GGAAGATAATGGAAGGGAAA+GGG 0.523029 7_1:+18304240 Msa1012820:CDS
CCAATGGCCTGCATTCATGC+AGG 0.532300 7_1:+18303695 Msa1012820:CDS
TTCCTCCGGATCACCGGCGT+AGG 0.532300 7_1:+18303747 Msa1012820:CDS
GCTCCTTTCCTCCGGATCAC+CGG 0.533425 7_1:+18303741 Msa1012820:CDS
TAGATCTTGAGGACTTCCAT+AGG 0.534706 7_1:-18303546 None:intergenic
CCCTTCGAGTTCCACCCCGT+TGG 0.536028 7_1:+18303837 Msa1012820:CDS
CCAACGGGGTGGAACTCGAA+GGG 0.537973 7_1:-18303837 None:intergenic
CAGGCCATTGGTAGCCCTGA+AGG 0.538080 7_1:-18303683 None:intergenic
TGCCAGGAACACGGTGGAGA+CGG 0.538538 7_1:-18303935 None:intergenic
AGAATCTCTAAGTGCAAGAC+TGG 0.538771 7_1:+18303422 Msa1012820:CDS
GGACTTCCATAGGGTTTGAT+GGG 0.540263 7_1:-18303536 None:intergenic
GGAATCAGCACCAAGGGCTA+AGG 0.543556 7_1:+18304124 Msa1012820:CDS
ATCCTCAAGTTGTTCTCCAA+CGG 0.543558 7_1:-18303853 None:intergenic
CTAATGCAGTGACTCAATCA+AGG 0.544135 7_1:+18304285 Msa1012820:CDS
TTGGGTTTGTATTCATGTGA+TGG 0.544918 7_1:+18304314 Msa1012820:CDS
GGAAACCGGACGATGCTTGA+CGG 0.549465 7_1:+18303791 Msa1012820:CDS
AGACAATTTGGTAGATCTTG+AGG 0.549770 7_1:-18303557 None:intergenic
AAGGTTGTTTGTTGCTTGGG+TGG 0.550029 7_1:+18304357 Msa1012820:CDS
TCCAGTGGAATCAGCACCAA+GGG 0.550198 7_1:+18304118 Msa1012820:CDS
AGATCTTGAGGACTTCCATA+GGG 0.551151 7_1:-18303545 None:intergenic
AGGTTCCCGAGATGATTGCC+AGG 0.551741 7_1:-18303951 None:intergenic
GAGCAAGAAGCAAGCCATAA+CGG 0.555779 7_1:+18304020 Msa1012820:CDS
TCTAAGTCAAATTTGAGAGA+TGG 0.557349 7_1:-18302091 None:intergenic
TGTAACTATAACTATGCTCA+AGG 0.559054 7_1:+18302259 Msa1012820:CDS
ATCAGCACCAAGGGCTAAGG+TGG 0.559830 7_1:+18304127 Msa1012820:CDS
TAACTCCGTCAAGCATCGTC+CGG 0.560723 7_1:-18303796 None:intergenic
GATGACGATGATAATGATGA+TGG 0.562002 7_1:-18303489 None:intergenic
ATGGAAGGGAAAGGGTTCAA+AGG 0.562746 7_1:+18304248 Msa1012820:CDS
GGTAGCCCTGAAGGATATCA+AGG 0.563155 7_1:-18303674 None:intergenic
GGATATCAAGGTCGATGACA+TGG 0.564199 7_1:-18303662 None:intergenic
GATCTACCAAATTGTCTACC+AGG 0.564411 7_1:+18303563 Msa1012820:CDS
CGGAGGAAAGGAGCACCACC+GGG 0.564457 7_1:-18303732 None:intergenic
GGTAGATAAACATGATGAGG+AGG 0.565470 7_1:-18303511 None:intergenic
GAAGGTAGATAAACATGATG+AGG 0.572092 7_1:-18303514 None:intergenic
AAATGGAGGAAGATAATGGA+AGG 0.574690 7_1:+18304233 Msa1012820:CDS
GAGGTGGTGAACAACCTGAT+AGG 0.574741 7_1:-18302297 None:intergenic
ACGCCGGTGATCCGGAGGAA+AGG 0.576975 7_1:-18303744 None:intergenic
CTATTATCGCTGCTTCTGCA+TGG 0.579656 7_1:+18304390 Msa1012820:CDS
ACATGAAGCTACTCTTTGCA+TGG 0.581987 7_1:-18303394 None:intergenic
TCCAACGGGGTGGAACTCGA+AGG 0.584775 7_1:-18303838 None:intergenic
TCCTCCGGATCACCGGCGTA+GGG 0.584832 7_1:+18303748 Msa1012820:CDS
CCTGCATGAATGCAGGCCAT+TGG 0.587372 7_1:-18303695 None:intergenic
GTTTAACCGCCGTGTAGGCG+AGG 0.587763 7_1:+18303890 Msa1012820:CDS
GTGTTACTACTCTATTGAGC+TGG 0.588376 7_1:-18303359 None:intergenic
GTGAATACATGCTAGCAAGA+AGG 0.591113 7_1:+18303328 Msa1012820:CDS
TGTGCTGAAGCAGTGGCAAA+AGG 0.593207 7_1:+18303306 Msa1012820:CDS
CTACTCTATTGAGCTGGTGT+AGG 0.595572 7_1:-18303353 None:intergenic
TGCTGATTCCACTGGAAAAG+TGG 0.596664 7_1:-18304111 None:intergenic
CGGAACATCGTAGCATGTGA+AGG 0.597195 7_1:+18304176 Msa1012820:CDS
GAATTAAATACTCTATGAAG+TGG 0.597232 7_1:-18302382 None:intergenic
GCCGTGCATCGAATCAGTTA+GGG 0.599094 7_1:+18303770 Msa1012820:CDS
CAACGGGGTGGAACTCGAAG+GGG 0.601149 7_1:-18303836 None:intergenic
TCTAGCATGTGCTGAAGCAG+TGG 0.602572 7_1:+18303299 Msa1012820:CDS
CGAGATGATTGCCAGGAACA+CGG 0.603757 7_1:-18303944 None:intergenic
ATCACCAGATAGTTCAATGT+GGG 0.605621 7_1:+18302132 Msa1012820:CDS
ATATCCTTCAGGGCTACCAA+TGG 0.606276 7_1:+18303679 Msa1012820:CDS
GCCCTACGCCGGTGATCCGG+AGG 0.610803 7_1:-18303749 None:intergenic
AGGAAGATAATGGAAGGGAA+AGG 0.613642 7_1:+18304239 Msa1012820:CDS
CCCCGTTGGAGAACAACTTG+AGG 0.617458 7_1:+18303851 Msa1012820:CDS
CATCGTAGCATGTGAAGGTG+AGG 0.619286 7_1:+18304181 Msa1012820:CDS
CTTTGCATGGAGTCACCTAG+TGG 0.624018 7_1:-18303381 None:intergenic
GGAGCAGTATATATTTGCAC+CGG 0.624565 7_1:+18304148 Msa1012820:CDS
TTCCAGTGGAATCAGCACCA+AGG 0.632372 7_1:+18304117 Msa1012820:CDS
AATGGAGGAAGATAATGGAA+GGG 0.644464 7_1:+18304234 Msa1012820:CDS
ATTTGACTTAGATGGTGATG+TGG 0.646549 7_1:+18302102 Msa1012820:CDS
AATAGAGTAGTAACACCACT+AGG 0.648126 7_1:+18303366 Msa1012820:CDS
CACATGTTTAACCGCCGTGT+AGG 0.660169 7_1:+18303885 Msa1012820:CDS
CAAGTTGTTCTCCAACGGGG+TGG 0.668903 7_1:-18303848 None:intergenic
ACACGGCGGTTAAACATGTG+CGG 0.674730 7_1:-18303882 None:intergenic
TAGCATGTGAAGGTGAGGAG+AGG 0.683443 7_1:+18304186 Msa1012820:CDS
ACCAAACATAGTGACACTTG+TGG 0.687522 7_1:+18303998 Msa1012820:CDS
TATATGTAGGAACAAGACAG+TGG 0.702151 7_1:+18303255 Msa1012820:intron
TTATTGTAAGTAGAAGCTTG+TGG 0.706364 7_1:-18302235 None:intergenic
CCAATTTGTGATGCAAAACG+AGG 0.711917 7_1:-18302316 None:intergenic
TGATGGTTATAGGTTAACTG+AGG 0.712462 7_1:+18304331 Msa1012820:CDS
AATCACCAGATAGTTCAATG+TGG 0.716750 7_1:+18302131 Msa1012820:CDS
CCTCAAGTTGTTCTCCAACG+GGG 0.734185 7_1:-18303851 None:intergenic
ATTTGTGATGCAAAACGAGG+TGG 0.735195 7_1:-18302313 None:intergenic
GATGATTGCCAGGAACACGG+TGG 0.742020 7_1:-18303941 None:intergenic
CCAAAGCCTCGCCTACACGG+CGG 0.759718 7_1:-18303896 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAATTAATTAAGATTTT+AGG - chr7_1:18302838-18302857 None:intergenic 10.0%
!! TTAAATATTTAATACAGAAA+TGG - chr7_1:18303134-18303153 None:intergenic 10.0%
!! AATAGTAATAATCAACAAAA+AGG + chr7_1:18302346-18302365 Msa1012820:CDS 15.0%
!! ATAGTAATAATCAACAAAAA+GGG + chr7_1:18302347-18302366 Msa1012820:CDS 15.0%
!! TATGTTAATTTATTCAGTTA+GGG - chr7_1:18302882-18302901 None:intergenic 15.0%
!! TTATGTTAATTTATTCAGTT+AGG - chr7_1:18302883-18302902 None:intergenic 15.0%
!!! TTTGTTTGATTTGAAGAATT+GGG - chr7_1:18301989-18302008 None:intergenic 20.0%
!!! ATTTGTTTGATTTGAAGAAT+TGG - chr7_1:18301990-18302009 None:intergenic 20.0%
!! TCATGAAATCATTATCTAAA+TGG - chr7_1:18302174-18302193 None:intergenic 20.0%
!!! TGTTGCATATATTGATTATT+TGG - chr7_1:18302409-18302428 None:intergenic 20.0%
!! ATATTTAATACAGAAATGGA+AGG - chr7_1:18303130-18303149 None:intergenic 20.0%
!! GCTATATATCTAATATATGT+AGG + chr7_1:18303242-18303261 Msa1012820:intron 20.0%
! TAAATCACTACAAGAATTTG+TGG - chr7_1:18302032-18302051 None:intergenic 25.0%
!! TTAGGGTTAATGTTTCTAAT+GGG - chr7_1:18302205-18302224 None:intergenic 25.0%
! AATAATCAACAAAAAGGGAA+AGG + chr7_1:18302352-18302371 Msa1012820:CDS 25.0%
! GAATTAAATACTCTATGAAG+TGG - chr7_1:18302385-18302404 None:intergenic 25.0%
!! AACTCCAATATCAACAATTT+TGG + chr7_1:18302537-18302556 Msa1012820:CDS 25.0%
! CTATCCAAAATTGTTGATAT+TGG - chr7_1:18302544-18302563 None:intergenic 25.0%
! AGTGATATGTATCATCAAAT+GGG + chr7_1:18302661-18302680 Msa1012820:CDS 25.0%
! TTAATTTATTCAGTTAGGGA+GGG - chr7_1:18302878-18302897 None:intergenic 25.0%
! ATTGGTTATGTAATCCATAA+AGG + chr7_1:18303076-18303095 Msa1012820:intron 25.0%
!! AGTGTGCAAATTTTATGTAA+GGG - chr7_1:18303593-18303612 None:intergenic 25.0%
!! AAGTGTGCAAATTTTATGTA+AGG - chr7_1:18303594-18303613 None:intergenic 25.0%
! ACTCAATCAAGGATATTATT+GGG + chr7_1:18304296-18304315 Msa1012820:CDS 25.0%
ATTTGAGAGATGGTAAGTTT+AGG - chr7_1:18302084-18302103 None:intergenic 30.0%
TCTAAGTCAAATTTGAGAGA+TGG - chr7_1:18302094-18302113 None:intergenic 30.0%
! TCTCTCAAATTTGACTTAGA+TGG + chr7_1:18302094-18302113 Msa1012820:CDS 30.0%
! GTTAGGGTTAATGTTTCTAA+TGG - chr7_1:18302206-18302225 None:intergenic 30.0%
TTATTGTAAGTAGAAGCTTG+TGG - chr7_1:18302238-18302257 None:intergenic 30.0%
TGTAACTATAACTATGCTCA+AGG + chr7_1:18302259-18302278 Msa1012820:CDS 30.0%
! GAGTTCTTAGAAGATTTTCA+AGG + chr7_1:18302460-18302479 Msa1012820:CDS 30.0%
!! TGATCACTTTTCATCAACAA+AGG + chr7_1:18302489-18302508 Msa1012820:CDS 30.0%
!!! TTCTTCTGAATGTTTTGACA+TGG + chr7_1:18302513-18302532 Msa1012820:CDS 30.0%
CAAAATTCTTCAAGCTATTG+TGG + chr7_1:18302574-18302593 Msa1012820:CDS 30.0%
! GAAGAATCTACTATTTTGCA+TGG + chr7_1:18302607-18302626 Msa1012820:CDS 30.0%
GAGTGATATGTATCATCAAA+TGG + chr7_1:18302660-18302679 Msa1012820:CDS 30.0%
!! TTTTAGGTGAAGAAAGACAA+AGG - chr7_1:18302822-18302841 None:intergenic 30.0%
TAATTTATTCAGTTAGGGAG+GGG - chr7_1:18302877-18302896 None:intergenic 30.0%
GTTAATTTATTCAGTTAGGG+AGG - chr7_1:18302879-18302898 None:intergenic 30.0%
TGTAATCCATAAAGGAATAG+TGG + chr7_1:18303084-18303103 Msa1012820:intron 30.0%
!!! TGATGATGGTGTTAACTTTT+TGG - chr7_1:18303478-18303497 None:intergenic 30.0%
GACTCAATCAAGGATATTAT+TGG + chr7_1:18304295-18304314 Msa1012820:CDS 30.0%
TGTATTCATGTGATGGTTAT+AGG + chr7_1:18304321-18304340 Msa1012820:CDS 30.0%
TATAGGTTAACTGAGGATAA+AGG + chr7_1:18304338-18304357 Msa1012820:CDS 30.0%
! ATAAAGGTTGTTTGTTGCTT+GGG + chr7_1:18304354-18304373 Msa1012820:CDS 30.0%
! ATTTGACTTAGATGGTGATG+TGG + chr7_1:18302102-18302121 Msa1012820:CDS 35.0%
ACATTGAACTATCTGGTGAT+TGG - chr7_1:18302132-18302151 None:intergenic 35.0%
AATCACCAGATAGTTCAATG+TGG + chr7_1:18302131-18302150 Msa1012820:CDS 35.0%
ATCACCAGATAGTTCAATGT+GGG + chr7_1:18302132-18302151 Msa1012820:CDS 35.0%
TAGAAGCTTGTGGTGAATTA+GGG - chr7_1:18302228-18302247 None:intergenic 35.0%
ATGCAAATTCAAAGCCTATC+AGG + chr7_1:18302283-18302302 Msa1012820:CDS 35.0%
TCTAAGAACTCTTCAATTGC+TGG - chr7_1:18302451-18302470 None:intergenic 35.0%
! GAATCTACTATTTTGCATGG+TGG + chr7_1:18302610-18302629 Msa1012820:CDS 35.0%
GTATCATCAAATGGGATCTA+TGG + chr7_1:18302669-18302688 Msa1012820:CDS 35.0%
CACAAGCTTTACAACAAGAA+AGG + chr7_1:18302707-18302726 Msa1012820:CDS 35.0%
! GCATCTTTTGATGTTTCTCT+TGG - chr7_1:18302735-18302754 None:intergenic 35.0%
CTAACAGTTCCTATTCCAAT+TGG + chr7_1:18302772-18302791 Msa1012820:CDS 35.0%
TGCTCAATTCCAATTGGAAT+AGG - chr7_1:18302784-18302803 None:intergenic 35.0%
TATTCCAATTGGAATTGAGC+AGG + chr7_1:18302783-18302802 Msa1012820:CDS 35.0%
ATTACCTGCTCAATTCCAAT+TGG - chr7_1:18302790-18302809 None:intergenic 35.0%
! GTCTAAAGTCATGATTGATG+CGG + chr7_1:18302953-18302972 Msa1012820:intron 35.0%
GGACGTTAGATTTACGATAT+TGG + chr7_1:18303058-18303077 Msa1012820:intron 35.0%
TATATGTAGGAACAAGACAG+TGG + chr7_1:18303255-18303274 Msa1012820:intron 35.0%
AATAGAGTAGTAACACCACT+AGG + chr7_1:18303366-18303385 Msa1012820:CDS 35.0%
! GATGACGATGATAATGATGA+TGG - chr7_1:18303492-18303511 None:intergenic 35.0%
GAAGGTAGATAAACATGATG+AGG - chr7_1:18303517-18303536 None:intergenic 35.0%
AGACAATTTGGTAGATCTTG+AGG - chr7_1:18303560-18303579 None:intergenic 35.0%
ATATATTTGCACCGGAGATT+CGG + chr7_1:18304156-18304175 Msa1012820:CDS 35.0%
!! AAATGGAGGAAGATAATGGA+AGG + chr7_1:18304233-18304252 Msa1012820:CDS 35.0%
!! AATGGAGGAAGATAATGGAA+GGG + chr7_1:18304234-18304253 Msa1012820:CDS 35.0%
TTGGGTTTGTATTCATGTGA+TGG + chr7_1:18304314-18304333 Msa1012820:CDS 35.0%
TGATGGTTATAGGTTAACTG+AGG + chr7_1:18304331-18304350 Msa1012820:CDS 35.0%
! GATAAAGGTTGTTTGTTGCT+TGG + chr7_1:18304353-18304372 Msa1012820:CDS 35.0%
GATGGTAAGTTTAGGCTTTG+TGG - chr7_1:18302076-18302095 None:intergenic 40.0%
CTTGTGGTGAATTAGGGTTA+GGG - chr7_1:18302222-18302241 None:intergenic 40.0%
GTAGAAGCTTGTGGTGAATT+AGG - chr7_1:18302229-18302248 None:intergenic 40.0%
ATTTGTGATGCAAAACGAGG+TGG - chr7_1:18302316-18302335 None:intergenic 40.0%
CCAATTTGTGATGCAAAACG+AGG - chr7_1:18302319-18302338 None:intergenic 40.0%
! CCTCGTTTTGCATCACAAAT+TGG + chr7_1:18302316-18302335 Msa1012820:CDS 40.0%
TGTTGTGTCCTCTATGTCTA+TGG + chr7_1:18303037-18303056 Msa1012820:intron 40.0%
TCTAACGTCCATAGACATAG+AGG - chr7_1:18303048-18303067 None:intergenic 40.0%
GTGAATACATGCTAGCAAGA+AGG + chr7_1:18303328-18303347 Msa1012820:CDS 40.0%
! GTGTTACTACTCTATTGAGC+TGG - chr7_1:18303362-18303381 None:intergenic 40.0%
ACATGAAGCTACTCTTTGCA+TGG - chr7_1:18303397-18303416 None:intergenic 40.0%
AGAATCTCTAAGTGCAAGAC+TGG + chr7_1:18303422-18303441 Msa1012820:CDS 40.0%
!! TGACGATGACTTGGTTGTTA+GGG - chr7_1:18303454-18303473 None:intergenic 40.0%
!! TTGACGATGACTTGGTTGTT+AGG - chr7_1:18303455-18303474 None:intergenic 40.0%
!!! CTTTTTGGTTGACGATGACT+TGG - chr7_1:18303463-18303482 None:intergenic 40.0%
GGTAGATAAACATGATGAGG+AGG - chr7_1:18303514-18303533 None:intergenic 40.0%
AGATCTTGAGGACTTCCATA+GGG - chr7_1:18303548-18303567 None:intergenic 40.0%
TAGATCTTGAGGACTTCCAT+AGG - chr7_1:18303549-18303568 None:intergenic 40.0%
GATCTACCAAATTGTCTACC+AGG + chr7_1:18303563-18303582 Msa1012820:CDS 40.0%
! ATTTTATGTAAGGGCAAGCC+TGG - chr7_1:18303584-18303603 None:intergenic 40.0%
ATCGACCTTGATATCCTTCA+GGG + chr7_1:18303669-18303688 Msa1012820:CDS 40.0%
ATCGAATCAGTTAGGGAAAC+CGG + chr7_1:18303777-18303796 Msa1012820:CDS 40.0%
! ATCCTCAAGTTGTTCTCCAA+CGG - chr7_1:18303856-18303875 None:intergenic 40.0%
ACCAAACATAGTGACACTTG+TGG + chr7_1:18303998-18304017 Msa1012820:CDS 40.0%
! TCCACAAGTGTCACTATGTT+TGG - chr7_1:18304002-18304021 None:intergenic 40.0%
AGAAATCGGCCCAAAAAGTA+CGG - chr7_1:18304047-18304066 None:intergenic 40.0%
AATGCAAAGCCTCGAGAAAT+CGG - chr7_1:18304061-18304080 None:intergenic 40.0%
GGAGCAGTATATATTTGCAC+CGG + chr7_1:18304148-18304167 Msa1012820:CDS 40.0%
GGAGAAATGGAGGAAGATAA+TGG + chr7_1:18304229-18304248 Msa1012820:CDS 40.0%
!! AGGAAGATAATGGAAGGGAA+AGG + chr7_1:18304239-18304258 Msa1012820:CDS 40.0%
!! GGAAGATAATGGAAGGGAAA+GGG + chr7_1:18304240-18304259 Msa1012820:CDS 40.0%
CTTGATTGAGTCACTGCATT+AGG - chr7_1:18304287-18304306 None:intergenic 40.0%
CTAATGCAGTGACTCAATCA+AGG + chr7_1:18304285-18304304 Msa1012820:CDS 40.0%
GCTTCCCACATTGAACTATC+TGG - chr7_1:18302139-18302158 None:intergenic 45.0%
GCTTGTGGTGAATTAGGGTT+AGG - chr7_1:18302223-18302242 None:intergenic 45.0%
CTACTCTATTGAGCTGGTGT+AGG - chr7_1:18303356-18303375 None:intergenic 45.0%
TACCTTCCCATCAAACCCTA+TGG + chr7_1:18303530-18303549 Msa1012820:CDS 45.0%
TTCCATAGGGTTTGATGGGA+AGG - chr7_1:18303535-18303554 None:intergenic 45.0%
GGACTTCCATAGGGTTTGAT+GGG - chr7_1:18303539-18303558 None:intergenic 45.0%
AGGACTTCCATAGGGTTTGA+TGG - chr7_1:18303540-18303559 None:intergenic 45.0%
!! CTCGAAAATGGCTTGGTTAG+CGG - chr7_1:18303619-18303638 None:intergenic 45.0%
TGCTTCAAACGCCTCGAAAA+TGG - chr7_1:18303631-18303650 None:intergenic 45.0%
GGATATCAAGGTCGATGACA+TGG - chr7_1:18303665-18303684 None:intergenic 45.0%
CATCGACCTTGATATCCTTC+AGG + chr7_1:18303668-18303687 Msa1012820:CDS 45.0%
ATATCCTTCAGGGCTACCAA+TGG + chr7_1:18303679-18303698 Msa1012820:CDS 45.0%
!! TCCCTAACTGATTCGATGCA+CGG - chr7_1:18303774-18303793 None:intergenic 45.0%
! TCCTCAAGTTGTTCTCCAAC+GGG - chr7_1:18303855-18303874 None:intergenic 45.0%
GGTCTCTTATCATGGACAAC+AGG - chr7_1:18303974-18303993 None:intergenic 45.0%
TGGTGCTTGGTCTCTTATCA+TGG - chr7_1:18303982-18304001 None:intergenic 45.0%
!! GTGTCACTATGTTTGGTGCT+TGG - chr7_1:18303995-18304014 None:intergenic 45.0%
GAGCAAGAAGCAAGCCATAA+CGG + chr7_1:18304020-18304039 Msa1012820:CDS 45.0%
AGCAAGAAGCAAGCCATAAC+GGG + chr7_1:18304021-18304040 Msa1012820:CDS 45.0%
!!! CATAACGGGCCGTACTTTTT+GGG + chr7_1:18304035-18304054 Msa1012820:CDS 45.0%
! CTCTGCAATTTTCGACTCCT+TGG + chr7_1:18304085-18304104 Msa1012820:CDS 45.0%
!! TGCTGATTCCACTGGAAAAG+TGG - chr7_1:18304114-18304133 None:intergenic 45.0%
ATGAGAGGTTGGAGAAATGG+AGG + chr7_1:18304219-18304238 Msa1012820:CDS 45.0%
ATGGAAGGGAAAGGGTTCAA+AGG + chr7_1:18304248-18304267 Msa1012820:CDS 45.0%
GTCACTGCATTAGGACTTAG+AGG - chr7_1:18304278-18304297 None:intergenic 45.0%
! AAGGTTGTTTGTTGCTTGGG+TGG + chr7_1:18304357-18304376 Msa1012820:CDS 45.0%
CTATTATCGCTGCTTCTGCA+TGG + chr7_1:18304390-18304409 Msa1012820:CDS 45.0%
GAGGTGGTGAACAACCTGAT+AGG - chr7_1:18302300-18302319 None:intergenic 50.0%
GCTGCGCCACTATTCCTTTA+TGG - chr7_1:18303093-18303112 None:intergenic 50.0%
TCTAGCATGTGCTGAAGCAG+TGG + chr7_1:18303299-18303318 Msa1012820:CDS 50.0%
TGTGCTGAAGCAGTGGCAAA+AGG + chr7_1:18303306-18303325 Msa1012820:CDS 50.0%
CTTTGCATGGAGTCACCTAG+TGG - chr7_1:18303384-18303403 None:intergenic 50.0%
GGCAAGCCTGGTAGACAATT+TGG - chr7_1:18303572-18303591 None:intergenic 50.0%
!! CGCTAACCAAGCCATTTTCG+AGG + chr7_1:18303617-18303636 Msa1012820:CDS 50.0%
CAAACGCCTCGAAAATGGCT+TGG - chr7_1:18303626-18303645 None:intergenic 50.0%
GGTAGCCCTGAAGGATATCA+AGG - chr7_1:18303677-18303696 None:intergenic 50.0%
GCCGTGCATCGAATCAGTTA+GGG + chr7_1:18303770-18303789 Msa1012820:CDS 50.0%
! TAACTCCGTCAAGCATCGTC+CGG - chr7_1:18303799-18303818 None:intergenic 50.0%
! CCTCAAGTTGTTCTCCAACG+GGG - chr7_1:18303854-18303873 None:intergenic 50.0%
ACACGGCGGTTAAACATGTG+CGG - chr7_1:18303885-18303904 None:intergenic 50.0%
CACATGTTTAACCGCCGTGT+AGG + chr7_1:18303885-18303904 Msa1012820:CDS 50.0%
AACACGGTGGAGACGGTTAA+CGG - chr7_1:18303931-18303950 None:intergenic 50.0%
CGAGATGATTGCCAGGAACA+CGG - chr7_1:18303947-18303966 None:intergenic 50.0%
CGTGTTCCTGGCAATCATCT+CGG + chr7_1:18303945-18303964 Msa1012820:CDS 50.0%
GTGTTCCTGGCAATCATCTC+GGG + chr7_1:18303946-18303965 Msa1012820:CDS 50.0%
! CCAAAAAGTACGGCCCGTTA+TGG - chr7_1:18304037-18304056 None:intergenic 50.0%
!!! CCATAACGGGCCGTACTTTT+TGG + chr7_1:18304034-18304053 Msa1012820:CDS 50.0%
!! CTTTTTGGGCCGATTTCTCG+AGG + chr7_1:18304049-18304068 Msa1012820:CDS 50.0%
TTCCAGTGGAATCAGCACCA+AGG + chr7_1:18304117-18304136 Msa1012820:CDS 50.0%
TCCAGTGGAATCAGCACCAA+GGG + chr7_1:18304118-18304137 Msa1012820:CDS 50.0%
GCTACGATGTTCCGAATCTC+CGG - chr7_1:18304170-18304189 None:intergenic 50.0%
CGGAACATCGTAGCATGTGA+AGG + chr7_1:18304176-18304195 Msa1012820:CDS 50.0%
CATCGTAGCATGTGAAGGTG+AGG + chr7_1:18304181-18304200 Msa1012820:CDS 50.0%
TAGCATGTGAAGGTGAGGAG+AGG + chr7_1:18304186-18304205 Msa1012820:CDS 50.0%
AAGGTGAGGAGAGGATAGAG+AGG + chr7_1:18304195-18304214 Msa1012820:CDS 50.0%
! AGAGGATAGAGAGGCATGAG+AGG + chr7_1:18304204-18304223 Msa1012820:CDS 50.0%
! GATAGAGAGGCATGAGAGGT+TGG + chr7_1:18304208-18304227 Msa1012820:CDS 50.0%
GGCATGAGAGGTTGGAGAAA+TGG + chr7_1:18304216-18304235 Msa1012820:CDS 50.0%
CCTGCATGAATGCAGGCCAT+TGG - chr7_1:18303698-18303717 None:intergenic 55.0%
CCAATGGCCTGCATTCATGC+AGG + chr7_1:18303695-18303714 Msa1012820:CDS 55.0%
GCCTGCATTCATGCAGGCAT+TGG + chr7_1:18303701-18303720 Msa1012820:CDS 55.0%
GCCAATGCCTGCATGAATGC+AGG - chr7_1:18303705-18303724 None:intergenic 55.0%
!! TCATGCAGGCATTGGCTGCA+CGG + chr7_1:18303709-18303728 Msa1012820:CDS 55.0%
GGCCGTGCATCGAATCAGTT+AGG + chr7_1:18303769-18303788 Msa1012820:CDS 55.0%
GGAAACCGGACGATGCTTGA+CGG + chr7_1:18303791-18303810 Msa1012820:CDS 55.0%
CAAGTTGTTCTCCAACGGGG+TGG - chr7_1:18303851-18303870 None:intergenic 55.0%
CCCCGTTGGAGAACAACTTG+AGG + chr7_1:18303851-18303870 Msa1012820:CDS 55.0%
GATGATTGCCAGGAACACGG+TGG - chr7_1:18303944-18303963 None:intergenic 55.0%
AGGTTCCCGAGATGATTGCC+AGG - chr7_1:18303954-18303973 None:intergenic 55.0%
CACTGGAAAAGTGGCGTCCA+AGG - chr7_1:18304105-18304124 None:intergenic 55.0%
!!! CTTGGACGCCACTTTTCCAG+TGG + chr7_1:18304103-18304122 Msa1012820:CDS 55.0%
GGAATCAGCACCAAGGGCTA+AGG + chr7_1:18304124-18304143 Msa1012820:CDS 55.0%
ATCAGCACCAAGGGCTAAGG+TGG + chr7_1:18304127-18304146 Msa1012820:CDS 55.0%
TACTGCTCCACCTTAGCCCT+TGG - chr7_1:18304137-18304156 None:intergenic 55.0%
! CAGGCCATTGGTAGCCCTGA+AGG - chr7_1:18303686-18303705 None:intergenic 60.0%
GCTCCTTTCCTCCGGATCAC+CGG + chr7_1:18303741-18303760 Msa1012820:CDS 60.0%
CAACGGGGTGGAACTCGAAG+GGG - chr7_1:18303839-18303858 None:intergenic 60.0%
CCAACGGGGTGGAACTCGAA+GGG - chr7_1:18303840-18303859 None:intergenic 60.0%
TCCAACGGGGTGGAACTCGA+AGG - chr7_1:18303841-18303860 None:intergenic 60.0%
GTTTAACCGCCGTGTAGGCG+AGG + chr7_1:18303890-18303909 Msa1012820:CDS 60.0%
AACCGTCTCCACCGTGTTCC+TGG + chr7_1:18303933-18303952 Msa1012820:CDS 60.0%
TGCCAGGAACACGGTGGAGA+CGG - chr7_1:18303938-18303957 None:intergenic 60.0%
!! GCCCTTGGTGCTGATTCCAC+TGG - chr7_1:18304122-18304141 None:intergenic 60.0%
!! CGGAGGAAAGGAGCACCACC+GGG - chr7_1:18303735-18303754 None:intergenic 65.0%
!! CCGGAGGAAAGGAGCACCAC+CGG - chr7_1:18303736-18303755 None:intergenic 65.0%
CCGGTGGTGCTCCTTTCCTC+CGG + chr7_1:18303733-18303752 Msa1012820:CDS 65.0%
ACGCCGGTGATCCGGAGGAA+AGG - chr7_1:18303747-18303766 None:intergenic 65.0%
TTCCTCCGGATCACCGGCGT+AGG + chr7_1:18303747-18303766 Msa1012820:CDS 65.0%
TCCTCCGGATCACCGGCGTA+GGG + chr7_1:18303748-18303767 Msa1012820:CDS 65.0%
TTCGATGCACGGCCCTACGC+CGG - chr7_1:18303763-18303782 None:intergenic 65.0%
! CCCTTCGAGTTCCACCCCGT+TGG + chr7_1:18303837-18303856 Msa1012820:CDS 65.0%
CCAAAGCCTCGCCTACACGG+CGG - chr7_1:18303899-18303918 None:intergenic 65.0%
CCGCCAAAGCCTCGCCTACA+CGG - chr7_1:18303902-18303921 None:intergenic 65.0%
! CCGTGTAGGCGAGGCTTTGG+CGG + chr7_1:18303899-18303918 Msa1012820:CDS 65.0%
!! CAGGCATTGGCTGCACGGCC+CGG + chr7_1:18303714-18303733 Msa1012820:CDS 70.0%
ACGGCCCTACGCCGGTGATC+CGG - chr7_1:18303755-18303774 None:intergenic 70.0%
CCGCCGTGTAGGCGAGGCTT+TGG + chr7_1:18303896-18303915 Msa1012820:CDS 70.0%
!! GCATTGGCTGCACGGCCCGG+TGG + chr7_1:18303717-18303736 Msa1012820:CDS 75.0%
GCCCTACGCCGGTGATCCGG+AGG - chr7_1:18303752-18303771 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 18301932 18304421 18301932 ID=Msa1012820;Name=Msa1012820
chr7_1 mRNA 18301932 18304421 18301932 ID=Msa1012820-mRNA-1;Parent=Msa1012820;Name=Msa1012820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|676
chr7_1 exon 18301932 18302804 18301932 ID=Msa1012820-mRNA-1:exon:4587;Parent=Msa1012820-mRNA-1
chr7_1 exon 18303264 18304421 18303264 ID=Msa1012820-mRNA-1:exon:4588;Parent=Msa1012820-mRNA-1
chr7_1 CDS 18301932 18302804 18301932 ID=Msa1012820-mRNA-1:cds;Parent=Msa1012820-mRNA-1
chr7_1 CDS 18303264 18304421 18303264 ID=Msa1012820-mRNA-1:cds;Parent=Msa1012820-mRNA-1
Gene Sequence

>Msa1012820

ATGATGAATTCACTTTGTGGAAGCTCAAATTCTCTCAAAGAAAAATGTCTTCAACCCAATTCTTCAAATCAAACAAATACTCACTCAAAGAAAAATGCCACAAATTCTTGTAGTGATTTAGAGCAAATTAATGTTCTAACTCCACAAAGCCTAAACTTACCATCTCTCAAATTTGACTTAGATGGTGATGTGGAAGTCCAATCACCAGATAGTTCAATGTGGGAAGCATTTTTCAATGACCATTTAGATAATGATTTCATGATATCATCACCCATTAGAAACATTAACCCTAACCCTAATTCACCACAAGCTTCTACTTACAATAATTGTAACTATAACTATGCTCAAGGCATGCAAATTCAAAGCCTATCAGGTTGTTCACCACCTCGTTTTGCATCACAAATTGGTTCATTAAATAGTAATAATCAACAAAAAGGGAAAGGACTTAGTCCACTTCATAGAGTATTTAATTCACCAAATAATCAATATATGCAACATGTTGAAAATCTTTCATTGCCAGCAATTGAAGAGTTCTTAGAAGATTTTCAAGGTGATGTTGATCACTTTTCATCAACAAAGGTTTCTTCTGAATGTTTTGACATGGAAACTCCAATATCAACAATTTTGGATAGTTTAACAATGCAAAATTCTTCAAGCTATTGTGGTTCAGTTAATGAAGAATCTACTATTTTGCATGGTGGTAATTCTTCTTCTCAACTTTCTCAAGAGAGTGATATGTATCATCAAATGGGATCTATGGCTAGTGCTTCTCTTTCACAAGCTTTACAACAAGAAAGGTACCAAGAGAAACATCAAAAGATGCAAGCTCAACAACAGAGTCTAACAGTTCCTATTCCAATTGGAATTGAGCAGGAACAAGACAGTGGACTTCAACTAGTGCACTTACTTCTAGCATGTGCTGAAGCAGTGGCAAAAGGTGAATACATGCTAGCAAGAAGGTACCTACACCAGCTCAATAGAGTAGTAACACCACTAGGTGACTCCATGCAAAGAGTAGCTTCATGTTTCACAGAATCTCTAAGTGCAAGACTGGCTGCAACCCTAACAACCAAGTCATCGTCAACCAAAAAGTTAACACCATCATCATTATCATCGTCATCCTCCTCATCATGTTTATCTACCTTCCCATCAAACCCTATGGAAGTCCTCAAGATCTACCAAATTGTCTACCAGGCTTGCCCTTACATAAAATTTGCACACTTTACCGCTAACCAAGCCATTTTCGAGGCGTTTGAAGCAGAAGAGCGTGTCCATGTCATCGACCTTGATATCCTTCAGGGCTACCAATGGCCTGCATTCATGCAGGCATTGGCTGCACGGCCCGGTGGTGCTCCTTTCCTCCGGATCACCGGCGTAGGGCCGTGCATCGAATCAGTTAGGGAAACCGGACGATGCTTGACGGAGTTAGCTCATTCTCTTCGTATCCCCTTCGAGTTCCACCCCGTTGGAGAACAACTTGAGGATCTTAAACCGCACATGTTTAACCGCCGTGTAGGCGAGGCTTTGGCGGTTAACACCGTTAACCGTCTCCACCGTGTTCCTGGCAATCATCTCGGGAACCTGTTGTCCATGATAAGAGACCAAGCACCAAACATAGTGACACTTGTGGAGCAAGAAGCAAGCCATAACGGGCCGTACTTTTTGGGCCGATTTCTCGAGGCTTTGCATTACTACTCTGCAATTTTCGACTCCTTGGACGCCACTTTTCCAGTGGAATCAGCACCAAGGGCTAAGGTGGAGCAGTATATATTTGCACCGGAGATTCGGAACATCGTAGCATGTGAAGGTGAGGAGAGGATAGAGAGGCATGAGAGGTTGGAGAAATGGAGGAAGATAATGGAAGGGAAAGGGTTCAAAGGAGTGCCTCTAAGTCCTAATGCAGTGACTCAATCAAGGATATTATTGGGTTTGTATTCATGTGATGGTTATAGGTTAACTGAGGATAAAGGTTGTTTGTTGCTTGGGTGGCAAGACAGAGCTATTATCGCTGCTTCTGCATGGCGATGCTGA
Protein sequence

>Msa1012820

MMNSLCGSSNSLKEKCLQPNSSNQTNTHSKKNATNSCSDLEQINVLTPQSLNLPSLKFDLDGDVEVQSPDSSMWEAFFNDHLDNDFMISSPIRNINPNPNSPQASTYNNCNYNYAQGMQIQSLSGCSPPRFASQIGSLNSNNQQKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDFQGDVDHFSSTKVSSECFDMETPISTILDSLTMQNSSSYCGSVNEESTILHGGNSSSQLSQESDMYHQMGSMASASLSQALQQERYQEKHQKMQAQQQSLTVPIPIGIEQEQDSGLQLVHLLLACAEAVAKGEYMLARRYLHQLNRVVTPLGDSMQRVASCFTESLSARLAATLTTKSSSTKKLTPSSLSSSSSSSCLSTFPSNPMEVLKIYQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPCIESVRETGRCLTELAHSLRIPFEFHPVGEQLEDLKPHMFNRRVGEALAVNTVNRLHRVPGNHLGNLLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPVESAPRAKVEQYIFAPEIRNIVACEGEERIERHERLEKWRKIMEGKGFKGVPLSPNAVTQSRILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWRC*