AlfalfaGEDB | Msa1012820

M. sativa cultivar zhongmu-4 / Msa1012820

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1012820	XP_003622095.1	98.373	676	9	1	1	676	1	674	0.0	1381

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1012820	sp\|G7L166\|RAM1_MEDTR	98.373	676	9	1	1	676	1	674	0.0	1381

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1012820	V7CXS5	78.129	695	101	13	1	676	1	663	0.0	1060

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TFs/TRs:

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Gene ID	Type	Classification
Msa1012820	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1012820	MtrunA17_Chr7g0224271	98.373	676	9	1	1	676	1	674	0.0	1381
Msa1012820	MtrunA17_Chr4g0057891	41.604	399	211	6	290	676	133	521	1.71e-96	307
Msa1012820	MtrunA17_Chr8g0376381	41.895	401	191	10	286	675	153	522	1.78e-94	302
Msa1012820	MtrunA17_Chr2g0306641	42.250	400	190	10	292	676	115	488	3.20e-93	298
Msa1012820	MtrunA17_Chr3g0110971	35.878	524	268	13	186	675	98	587	5.53e-93	300
Msa1012820	MtrunA17_Chr7g0245601	41.910	377	186	6	306	675	442	792	1.81e-92	304
Msa1012820	MtrunA17_Chr8g0357601	40.863	394	206	6	294	675	174	552	3.77e-88	286
Msa1012820	MtrunA17_Chr5g0447691	40.204	393	205	5	295	675	170	544	4.60e-88	285
Msa1012820	MtrunA17_Chr4g0057291	38.303	389	217	7	296	674	286	661	5.52e-82	273
Msa1012820	MtrunA17_Chr1g0159461	39.589	389	201	6	301	675	224	592	7.63e-81	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1012820	AT1G66350.1	44.103	390	184	11	293	676	146	507	1.35e-97	310
Msa1012820	AT3G03450.1	42.092	392	198	8	293	675	174	545	4.08e-95	304
Msa1012820	AT3G54220.1	41.709	398	196	6	287	674	278	649	1.12e-92	301
Msa1012820	AT1G14920.1	40.712	393	197	9	293	675	163	529	3.99e-90	291
Msa1012820	AT5G17490.1	42.967	391	190	10	293	675	151	516	2.29e-89	288
Msa1012820	AT2G01570.1	40.458	393	198	10	293	675	215	581	3.53e-87	285
Msa1012820	AT5G41920.1	40.759	395	202	9	289	675	30	400	2.01e-86	277
Msa1012820	AT2G04890.1	39.949	393	209	5	289	675	42	413	7.01e-84	271
Msa1012820	AT5G48150.1	39.481	385	204	5	303	675	123	490	5.96e-83	271
Msa1012820	AT5G48150.4	39.481	385	204	5	303	675	123	490	5.96e-83	271

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Find 164 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATGAATTCACTTTG+TGG	0.443783	7_1:+18301929	None:intergenic
AAATGGAGGAAGATAATGGA+AGG	0.574690	7_1:+18304233	Msa1012820:CDS
AACACGGTGGAGACGGTTAA+CGG	0.479130	7_1:-18303928	None:intergenic
AACCGTCTCCACCGTGTTCC+TGG	0.336032	7_1:+18303933	Msa1012820:CDS
AACTCCAATATCAACAATTT+TGG	0.134391	7_1:+18302537	Msa1012820:CDS
AAGGTGAGGAGAGGATAGAG+AGG	0.521365	7_1:+18304195	Msa1012820:CDS
AAGGTTGTTTGTTGCTTGGG+TGG	0.550029	7_1:+18304357	Msa1012820:CDS
AATAGAGTAGTAACACCACT+AGG	0.648126	7_1:+18303366	Msa1012820:CDS
AATAGTAATAATCAACAAAA+AGG	0.242712	7_1:+18302346	Msa1012820:CDS
AATCACCAGATAGTTCAATG+TGG	0.716750	7_1:+18302131	Msa1012820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGAGAGATGGTAAGTTT+AGG	-	chr7_1:18302084-18302103	None:intergenic	30.0%
TCTAAGTCAAATTTGAGAGA+TGG	-	chr7_1:18302094-18302113	None:intergenic	30.0%
TTATTGTAAGTAGAAGCTTG+TGG	-	chr7_1:18302238-18302257	None:intergenic	30.0%
TGTAACTATAACTATGCTCA+AGG	+	chr7_1:18302259-18302278	Msa1012820:CDS	30.0%
CAAAATTCTTCAAGCTATTG+TGG	+	chr7_1:18302574-18302593	Msa1012820:CDS	30.0%
GAGTGATATGTATCATCAAA+TGG	+	chr7_1:18302660-18302679	Msa1012820:CDS	30.0%
TAATTTATTCAGTTAGGGAG+GGG	-	chr7_1:18302877-18302896	None:intergenic	30.0%
GTTAATTTATTCAGTTAGGG+AGG	-	chr7_1:18302879-18302898	None:intergenic	30.0%
TGTAATCCATAAAGGAATAG+TGG	+	chr7_1:18303084-18303103	Msa1012820:intron	30.0%
GACTCAATCAAGGATATTAT+TGG	+	chr7_1:18304295-18304314	Msa1012820:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	18301932	18304421	18301932	ID=Msa1012820;Name=Msa1012820
chr7_1	mRNA	18301932	18304421	18301932	ID=Msa1012820-mRNA-1;Parent=Msa1012820;Name=Msa1012820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|2\|0\|676
chr7_1	exon	18301932	18302804	18301932	ID=Msa1012820-mRNA-1:exon:4587;Parent=Msa1012820-mRNA-1
chr7_1	exon	18303264	18304421	18303264	ID=Msa1012820-mRNA-1:exon:4588;Parent=Msa1012820-mRNA-1
chr7_1	CDS	18301932	18302804	18301932	ID=Msa1012820-mRNA-1:cds;Parent=Msa1012820-mRNA-1
chr7_1	CDS	18303264	18304421	18303264	ID=Msa1012820-mRNA-1:cds;Parent=Msa1012820-mRNA-1

Gene Sequence

>Msa1012820

ATGATGAATTCACTTTGTGGAAGCTCAAATTCTCTCAAAGAAAAATGTCTTCAACCCAATTCTTCAAATCAAACAAATACTCACTCAAAGAAAAATGCCACAAATTCTTGTAGTGATTTAGAGCAAATTAATGTTCTAACTCCACAAAGCCTAAACTTACCATCTCTCAAATTTGACTTAGATGGTGATGTGGAAGTCCAATCACCAGATAGTTCAATGTGGGAAGCATTTTTCAATGACCATTTAGATAATGATTTCATGATATCATCACCCATTAGAAACATTAACCCTAACCCTAATTCACCACAAGCTTCTACTTACAATAATTGTAACTATAACTATGCTCAAGGCATGCAAATTCAAAGCCTATCAGGTTGTTCACCACCTCGTTTTGCATCACAAATTGGTTCATTAAATAGTAATAATCAACAAAAAGGGAAAGGACTTAGTCCACTTCATAGAGTATTTAATTCACCAAATAATCAATATATGCAACATGTTGAAAATCTTTCATTGCCAGCAATTGAAGAGTTCTTAGAAGATTTTCAAGGTGATGTTGATCACTTTTCATCAACAAAGGTTTCTTCTGAATGTTTTGACATGGAAACTCCAATATCAACAATTTTGGATAGTTTAACAATGCAAAATTCTTCAAGCTATTGTGGTTCAGTTAATGAAGAATCTACTATTTTGCATGGTGGTAATTCTTCTTCTCAACTTTCTCAAGAGAGTGATATGTATCATCAAATGGGATCTATGGCTAGTGCTTCTCTTTCACAAGCTTTACAACAAGAAAGGTACCAAGAGAAACATCAAAAGATGCAAGCTCAACAACAGAGTCTAACAGTTCCTATTCCAATTGGAATTGAGCAGGAACAAGACAGTGGACTTCAACTAGTGCACTTACTTCTAGCATGTGCTGAAGCAGTGGCAAAAGGTGAATACATGCTAGCAAGAAGGTACCTACACCAGCTCAATAGAGTAGTAACACCACTAGGTGACTCCATGCAAAGAGTAGCTTCATGTTTCACAGAATCTCTAAGTGCAAGACTGGCTGCAACCCTAACAACCAAGTCATCGTCAACCAAAAAGTTAACACCATCATCATTATCATCGTCATCCTCCTCATCATGTTTATCTACCTTCCCATCAAACCCTATGGAAGTCCTCAAGATCTACCAAATTGTCTACCAGGCTTGCCCTTACATAAAATTTGCACACTTTACCGCTAACCAAGCCATTTTCGAGGCGTTTGAAGCAGAAGAGCGTGTCCATGTCATCGACCTTGATATCCTTCAGGGCTACCAATGGCCTGCATTCATGCAGGCATTGGCTGCACGGCCCGGTGGTGCTCCTTTCCTCCGGATCACCGGCGTAGGGCCGTGCATCGAATCAGTTAGGGAAACCGGACGATGCTTGACGGAGTTAGCTCATTCTCTTCGTATCCCCTTCGAGTTCCACCCCGTTGGAGAACAACTTGAGGATCTTAAACCGCACATGTTTAACCGCCGTGTAGGCGAGGCTTTGGCGGTTAACACCGTTAACCGTCTCCACCGTGTTCCTGGCAATCATCTCGGGAACCTGTTGTCCATGATAAGAGACCAAGCACCAAACATAGTGACACTTGTGGAGCAAGAAGCAAGCCATAACGGGCCGTACTTTTTGGGCCGATTTCTCGAGGCTTTGCATTACTACTCTGCAATTTTCGACTCCTTGGACGCCACTTTTCCAGTGGAATCAGCACCAAGGGCTAAGGTGGAGCAGTATATATTTGCACCGGAGATTCGGAACATCGTAGCATGTGAAGGTGAGGAGAGGATAGAGAGGCATGAGAGGTTGGAGAAATGGAGGAAGATAATGGAAGGGAAAGGGTTCAAAGGAGTGCCTCTAAGTCCTAATGCAGTGACTCAATCAAGGATATTATTGGGTTTGTATTCATGTGATGGTTATAGGTTAACTGAGGATAAAGGTTGTTTGTTGCTTGGGTGGCAAGACAGAGCTATTATCGCTGCTTCTGCATGGCGATGCTGA

Protein sequence

>Msa1012820

MMNSLCGSSNSLKEKCLQPNSSNQTNTHSKKNATNSCSDLEQINVLTPQSLNLPSLKFDLDGDVEVQSPDSSMWEAFFNDHLDNDFMISSPIRNINPNPNSPQASTYNNCNYNYAQGMQIQSLSGCSPPRFASQIGSLNSNNQQKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDFQGDVDHFSSTKVSSECFDMETPISTILDSLTMQNSSSYCGSVNEESTILHGGNSSSQLSQESDMYHQMGSMASASLSQALQQERYQEKHQKMQAQQQSLTVPIPIGIEQEQDSGLQLVHLLLACAEAVAKGEYMLARRYLHQLNRVVTPLGDSMQRVASCFTESLSARLAATLTTKSSSTKKLTPSSLSSSSSSSCLSTFPSNPMEVLKIYQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPCIESVRETGRCLTELAHSLRIPFEFHPVGEQLEDLKPHMFNRRVGEALAVNTVNRLHRVPGNHLGNLLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPVESAPRAKVEQYIFAPEIRNIVACEGEERIERHERLEKWRKIMEGKGFKGVPLSPNAVTQSRILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWRC*