Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1013840 | XP_013442252.2 | 78.378 | 333 | 27 | 2 | 1 | 333 | 1 | 288 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1013840 | sp|Q1PF16|BH019_ARATH | 44.792 | 192 | 93 | 6 | 147 | 326 | 103 | 293 | 4.85e-45 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1013840 | A0A072TFX4 | 77.742 | 310 | 24 | 2 | 24 | 333 | 1 | 265 | 1.45e-170 | 484 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1013840 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1013840 | MtrunA17_Chr7g0225901 | 76.573 | 286 | 22 | 2 | 24 | 309 | 1 | 241 | 2.26e-156 | 438 |
| Msa1013840 | MtrunA17_Chr6g0468491 | 70.898 | 323 | 72 | 5 | 24 | 333 | 1 | 314 | 5.03e-156 | 439 |
| Msa1013840 | MtrunA17_Chr2g0307131 | 65.374 | 361 | 90 | 7 | 1 | 332 | 1 | 355 | 6.01e-150 | 426 |
| Msa1013840 | MtrunA17_Chr2g0307141 | 65.565 | 363 | 92 | 7 | 1 | 333 | 1 | 360 | 3.32e-141 | 404 |
| Msa1013840 | MtrunA17_Chr4g0033291 | 64.348 | 345 | 95 | 8 | 1 | 333 | 1 | 329 | 4.41e-136 | 389 |
| Msa1013840 | MtrunA17_Chr4g0033391 | 64.392 | 337 | 94 | 8 | 1 | 330 | 1 | 318 | 6.14e-135 | 386 |
| Msa1013840 | MtrunA17_Chr4g0033281 | 61.207 | 348 | 92 | 8 | 1 | 330 | 1 | 323 | 1.64e-122 | 355 |
| Msa1013840 | MtrunA17_Chr6g0468461 | 61.194 | 335 | 79 | 9 | 1 | 308 | 1 | 311 | 9.44e-120 | 348 |
| Msa1013840 | MtrunA17_Chr4g0054581 | 51.804 | 388 | 123 | 10 | 1 | 333 | 1 | 379 | 3.53e-112 | 330 |
| Msa1013840 | MtrunA17_Chr4g0054621 | 45.355 | 366 | 143 | 14 | 1 | 333 | 1 | 342 | 1.02e-79 | 246 |
| Msa1013840 | MtrunA17_Chr5g0400621 | 43.077 | 325 | 164 | 7 | 18 | 332 | 20 | 333 | 2.56e-62 | 201 |
| Msa1013840 | MtrunA17_Chr5g0400661 | 36.152 | 343 | 176 | 10 | 14 | 328 | 7 | 334 | 2.18e-52 | 176 |
| Msa1013840 | MtrunA17_Chr2g0280161 | 44.976 | 209 | 97 | 4 | 133 | 330 | 151 | 352 | 7.21e-51 | 172 |
| Msa1013840 | MtrunA17_Chr5g0400641 | 53.049 | 164 | 68 | 4 | 159 | 317 | 1 | 160 | 8.87e-48 | 158 |
| Msa1013840 | MtrunA17_Chr4g0002801 | 44.595 | 222 | 102 | 8 | 125 | 329 | 114 | 331 | 1.24e-47 | 163 |
| Msa1013840 | MtrunA17_Chr4g0054561 | 37.868 | 272 | 154 | 6 | 64 | 323 | 52 | 320 | 2.72e-46 | 159 |
| Msa1013840 | MtrunA17_Chr4g0054551 | 35.294 | 272 | 161 | 5 | 64 | 323 | 52 | 320 | 5.22e-44 | 154 |
| Msa1013840 | MtrunA17_Chr4g0002781 | 40.889 | 225 | 110 | 7 | 125 | 329 | 129 | 350 | 1.71e-43 | 153 |
| Msa1013840 | MtrunA17_Chr4g0049331 | 43.915 | 189 | 94 | 3 | 148 | 330 | 127 | 309 | 9.05e-43 | 150 |
| Msa1013840 | MtrunA17_Chr8g0336681 | 46.369 | 179 | 85 | 4 | 155 | 324 | 155 | 331 | 4.91e-42 | 149 |
| Msa1013840 | MtrunA17_Chr7g0249811 | 41.262 | 206 | 112 | 2 | 124 | 329 | 133 | 329 | 2.62e-40 | 144 |
| Msa1013840 | MtrunA17_Chr5g0400671 | 43.503 | 177 | 95 | 3 | 153 | 328 | 151 | 323 | 2.77e-39 | 141 |
| Msa1013840 | MtrunA17_Chr4g0054571 | 35.671 | 328 | 174 | 11 | 14 | 330 | 30 | 331 | 1.37e-38 | 139 |
| Msa1013840 | MtrunA17_Chr2g0333641 | 41.711 | 187 | 103 | 4 | 139 | 323 | 120 | 302 | 2.24e-38 | 138 |
| Msa1013840 | MtrunA17_Chr2g0333621 | 40.609 | 197 | 112 | 3 | 139 | 332 | 121 | 315 | 1.08e-37 | 137 |
| Msa1013840 | MtrunA17_Chr2g0333541 | 40.265 | 226 | 112 | 5 | 112 | 327 | 55 | 267 | 4.76e-36 | 131 |
| Msa1013840 | MtrunA17_Chr2g0333611 | 40.449 | 178 | 96 | 3 | 157 | 330 | 46 | 217 | 1.95e-34 | 125 |
| Msa1013840 | MtrunA17_Chr4g0002851 | 34.839 | 155 | 69 | 3 | 179 | 326 | 65 | 194 | 3.58e-23 | 95.1 |
| Msa1013840 | MtrunA17_Chr7g0233441 | 36.129 | 155 | 75 | 4 | 179 | 326 | 57 | 194 | 4.30e-23 | 94.7 |
| Msa1013840 | MtrunA17_Chr4g0002831 | 33.929 | 168 | 87 | 4 | 166 | 326 | 52 | 202 | 1.23e-21 | 91.3 |
| Msa1013840 | MtrunA17_Chr8g0366751 | 32.432 | 185 | 105 | 5 | 135 | 300 | 434 | 617 | 3.67e-17 | 82.4 |
| Msa1013840 | MtrunA17_Chr1g0185621 | 28.834 | 163 | 98 | 4 | 142 | 289 | 457 | 616 | 1.40e-15 | 77.8 |
| Msa1013840 | MtrunA17_Chr5g0411341 | 29.944 | 177 | 104 | 5 | 142 | 300 | 474 | 648 | 7.08e-15 | 75.5 |
| Msa1013840 | MtrunA17_Chr8g0346151 | 31.933 | 119 | 67 | 3 | 156 | 265 | 279 | 392 | 1.50e-14 | 74.3 |
| Msa1013840 | MtrunA17_Chr8g0346161 | 29.586 | 169 | 90 | 5 | 138 | 285 | 263 | 423 | 2.17e-14 | 73.6 |
| Msa1013840 | MtrunA17_Chr3g0131691 | 26.263 | 198 | 129 | 4 | 135 | 319 | 277 | 470 | 4.33e-14 | 72.8 |
| Msa1013840 | MtrunA17_Chr7g0275821 | 29.861 | 144 | 93 | 3 | 156 | 299 | 252 | 387 | 6.06e-13 | 69.3 |
| Msa1013840 | MtrunA17_Chr8g0386921 | 42.466 | 73 | 42 | 0 | 148 | 220 | 398 | 470 | 6.96e-13 | 69.3 |
| Msa1013840 | MtrunA17_Chr7g0260841 | 30.573 | 157 | 83 | 6 | 79 | 209 | 252 | 408 | 2.27e-12 | 67.8 |
| Msa1013840 | MtrunA17_Chr1g0211081 | 28.877 | 187 | 102 | 7 | 137 | 292 | 295 | 481 | 7.36e-12 | 66.2 |
| Msa1013840 | MtrunA17_Chr8g0365711 | 25.641 | 156 | 105 | 4 | 158 | 305 | 246 | 398 | 7.01e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1013840 | AT2G22760.1 | 44.792 | 192 | 93 | 6 | 147 | 326 | 103 | 293 | 4.93e-46 | 158 |
| Msa1013840 | AT4G37850.2 | 42.647 | 204 | 102 | 5 | 139 | 330 | 127 | 327 | 1.11e-44 | 155 |
| Msa1013840 | AT4G37850.1 | 42.647 | 204 | 102 | 5 | 139 | 330 | 127 | 327 | 1.11e-44 | 155 |
| Msa1013840 | AT2G22750.2 | 45.455 | 198 | 99 | 4 | 140 | 331 | 111 | 305 | 8.52e-40 | 142 |
| Msa1013840 | AT2G22750.1 | 45.455 | 198 | 98 | 5 | 140 | 331 | 111 | 304 | 2.97e-38 | 138 |
| Msa1013840 | AT2G22760.2 | 43.353 | 173 | 86 | 5 | 147 | 308 | 103 | 274 | 3.91e-38 | 137 |
| Msa1013840 | AT2G22750.3 | 33.140 | 344 | 196 | 9 | 8 | 331 | 4 | 333 | 3.06e-36 | 134 |
| Msa1013840 | AT2G22770.1 | 38.009 | 221 | 109 | 5 | 133 | 326 | 98 | 317 | 6.53e-36 | 132 |
| Msa1013840 | AT2G22750.5 | 32.641 | 337 | 195 | 8 | 15 | 331 | 5 | 329 | 1.39e-35 | 132 |
| Msa1013840 | AT2G22750.4 | 33.140 | 344 | 195 | 10 | 8 | 331 | 4 | 332 | 8.36e-35 | 130 |
| Msa1013840 | AT4G17880.1 | 32.727 | 165 | 104 | 4 | 142 | 300 | 397 | 560 | 1.85e-16 | 80.5 |
| Msa1013840 | AT1G32640.1 | 29.936 | 157 | 96 | 3 | 156 | 307 | 452 | 599 | 4.89e-16 | 79.3 |
| Msa1013840 | AT5G46760.1 | 29.189 | 185 | 114 | 7 | 142 | 313 | 396 | 576 | 4.33e-15 | 76.6 |
| Msa1013840 | AT1G63650.3 | 29.586 | 169 | 96 | 5 | 156 | 304 | 405 | 570 | 4.19e-14 | 73.6 |
| Msa1013840 | AT1G63650.1 | 29.586 | 169 | 96 | 5 | 156 | 304 | 405 | 570 | 4.19e-14 | 73.6 |
| Msa1013840 | AT1G63650.2 | 29.586 | 169 | 96 | 5 | 156 | 304 | 405 | 570 | 4.19e-14 | 73.6 |
| Msa1013840 | AT5G41315.3 | 28.161 | 174 | 97 | 4 | 156 | 304 | 446 | 616 | 3.30e-13 | 70.9 |
| Msa1013840 | AT5G41315.1 | 28.161 | 174 | 97 | 4 | 156 | 304 | 441 | 611 | 3.53e-13 | 70.9 |
| Msa1013840 | AT5G41315.2 | 28.161 | 174 | 97 | 4 | 156 | 304 | 449 | 619 | 3.69e-13 | 70.9 |
| Msa1013840 | AT4G16430.1 | 40.244 | 82 | 44 | 1 | 140 | 216 | 299 | 380 | 1.66e-12 | 68.6 |
| Msa1013840 | AT3G26744.1 | 29.091 | 165 | 107 | 2 | 157 | 311 | 308 | 472 | 1.74e-12 | 68.6 |
| Msa1013840 | AT3G26744.4 | 29.091 | 165 | 107 | 2 | 157 | 311 | 308 | 472 | 1.74e-12 | 68.6 |
| Msa1013840 | AT3G26744.2 | 29.091 | 165 | 107 | 2 | 157 | 311 | 308 | 472 | 1.74e-12 | 68.6 |
| Msa1013840 | AT2G46510.1 | 41.772 | 79 | 41 | 2 | 142 | 215 | 376 | 454 | 2.13e-12 | 68.2 |
| Msa1013840 | AT1G01260.1 | 29.870 | 154 | 101 | 3 | 97 | 250 | 378 | 524 | 3.59e-12 | 67.8 |
| Msa1013840 | AT1G01260.2 | 29.870 | 154 | 101 | 3 | 97 | 250 | 378 | 524 | 3.59e-12 | 67.8 |
| Msa1013840 | AT1G01260.3 | 29.870 | 154 | 101 | 3 | 97 | 250 | 378 | 524 | 3.59e-12 | 67.8 |
| Msa1013840 | AT1G12860.1 | 29.240 | 171 | 114 | 4 | 157 | 321 | 268 | 437 | 1.08e-11 | 65.9 |
| Msa1013840 | AT3G26744.6 | 28.846 | 156 | 101 | 2 | 157 | 302 | 308 | 463 | 1.39e-11 | 65.9 |
| Msa1013840 | AT1G12860.2 | 30.263 | 152 | 100 | 3 | 157 | 302 | 268 | 419 | 2.36e-11 | 64.7 |
Find 57 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGTAGTGGATGAATT+TGG | 0.179475 | 7_1:+20893953 | None:intergenic |
| CAAGTGGAAGCAAGAGTCTT+AGG | 0.227099 | 7_1:-20892842 | Msa1013840:CDS |
| AGTAAAATTGTACATCAATA+AGG | 0.242006 | 7_1:+20892011 | None:intergenic |
| CCCGAATTTCCTTATAGATT+TGG | 0.259158 | 7_1:-20894167 | Msa1013840:CDS |
| TCTTATTCCTAACCTTAAAA+AGG | 0.267726 | 7_1:-20893741 | Msa1013840:intron |
| TCCAAATCTATAAGGAAATT+CGG | 0.272428 | 7_1:+20894166 | None:intergenic |
| TATTTGTCACTCTTGTTTAC+AGG | 0.276858 | 7_1:+20892038 | None:intergenic |
| AATAGTAGTGTCTTACCTTT+TGG | 0.280739 | 7_1:-20892725 | Msa1013840:CDS |
| CAACAGCTGGTTATCTGATT+TGG | 0.283101 | 7_1:-20895462 | Msa1013840:intron |
| AATTTGTAGTGGATGAATTT+GGG | 0.291366 | 7_1:+20893954 | None:intergenic |
| ACAAATTCCTTACAATTTAG+TGG | 0.309622 | 7_1:-20893938 | Msa1013840:CDS |
| GATGAGTTAGAAGAAAGTTT+TGG | 0.345146 | 7_1:+20894010 | None:intergenic |
| CAGAAGAGTCATCGAGAAAA+AGG | 0.350658 | 7_1:-20893850 | Msa1013840:CDS |
| TTCAAATCCACTAAATTGTA+AGG | 0.351709 | 7_1:+20893931 | None:intergenic |
| GGGGCTTATAGTTAAAATTA+TGG | 0.355304 | 7_1:-20892780 | Msa1013840:CDS |
| ATCAACAGTGTTTGACTTCA+AGG | 0.362949 | 7_1:-20894096 | Msa1013840:CDS |
| GAAGCTCTTCCAAATCTATA+AGG | 0.363733 | 7_1:+20894158 | None:intergenic |
| CCAAATCTATAAGGAAATTC+GGG | 0.373199 | 7_1:+20894167 | None:intergenic |
| ACTCTTGCTTCCACTTGAAA+TGG | 0.394913 | 7_1:+20892848 | None:intergenic |
| ACCAGTGTCTCCAACTGAAA+TGG | 0.420736 | 7_1:-20893900 | Msa1013840:CDS |
| GAGAGCCTTCATAGTGTTGT+TGG | 0.422784 | 7_1:-20892875 | Msa1013840:CDS |
| TAGGGAAATATATGTTGATT+CGG | 0.438258 | 7_1:-20892823 | Msa1013840:CDS |
| GTAAAATTGTACATCAATAA+GGG | 0.442727 | 7_1:+20892012 | None:intergenic |
| ATCACTATAAATGCCTGGTT+TGG | 0.451938 | 7_1:+20892919 | None:intergenic |
| AAGTGGAAGCAAGAGTCTTA+GGG | 0.455524 | 7_1:-20892841 | Msa1013840:CDS |
| AGGCTACAACATGAACATAA+AGG | 0.462195 | 7_1:-20892144 | Msa1013840:CDS |
| TCCATTTCAGTTGGAGACAC+TGG | 0.482760 | 7_1:+20893899 | None:intergenic |
| TGATTTCTTCCATCGTCTCA+AGG | 0.484415 | 7_1:+20897507 | None:intergenic |
| AACATGAGCAAAGAGTTTGT+TGG | 0.506016 | 7_1:-20892064 | Msa1013840:three_prime_UTR |
| GGTCTCTACCTGAGCAATGA+TGG | 0.507552 | 7_1:+20892682 | None:intergenic |
| AAAAGGTCTCGTGGTAATCA+TGG | 0.510954 | 7_1:-20893833 | Msa1013840:CDS |
| CAAGTGGTTGTGACCAAACC+AGG | 0.515887 | 7_1:-20892932 | Msa1013840:CDS |
| GGATCCAATGCAAAGAGCAC+AGG | 0.517019 | 7_1:-20892802 | Msa1013840:CDS |
| AAATTATGGTCGAAATTCAA+AGG | 0.523147 | 7_1:-20892766 | Msa1013840:CDS |
| CGACGTGACCATCATTGCTC+AGG | 0.526856 | 7_1:-20892690 | Msa1013840:intron |
| TTGTCATCACTATAAATGCC+TGG | 0.527391 | 7_1:+20892914 | None:intergenic |
| GTAAACCAACAACACTATGA+AGG | 0.536411 | 7_1:+20892870 | None:intergenic |
| CGAATACAATTTAATTGCTG+AGG | 0.543999 | 7_1:-20894197 | Msa1013840:CDS |
| TCATGGTCATGATCATATCA+TGG | 0.552733 | 7_1:-20893816 | Msa1013840:CDS |
| GATTTCTTCCATCGTCTCAA+GGG | 0.559884 | 7_1:+20897508 | None:intergenic |
| CAAATCAGATAACCAGCTGT+TGG | 0.564229 | 7_1:+20895463 | None:intergenic |
| GATCCAATGCAAAGAGCACA+GGG | 0.577809 | 7_1:-20892801 | Msa1013840:CDS |
| TTTGGGGTGTTGTCAAAACA+TGG | 0.585137 | 7_1:+20893971 | None:intergenic |
| AAGGCTCTCATCACATGAAG+AGG | 0.585610 | 7_1:+20892889 | None:intergenic |
| TATCATCATCAACCAACAGC+TGG | 0.596947 | 7_1:-20895475 | Msa1013840:CDS |
| TCGATGATAGAATCTCCAAA+AGG | 0.598134 | 7_1:+20892710 | None:intergenic |
| ACTTCAATGCTGCCATGCGT+AGG | 0.601033 | 7_1:+20892108 | None:intergenic |
| TGTTGGTTTACCATTTCAAG+TGG | 0.603001 | 7_1:-20892858 | Msa1013840:CDS |
| AAGTGTTACCCTTGAGACGA+TGG | 0.609310 | 7_1:-20897516 | Msa1013840:exon |
| AAATTGTAAGGAATTTGTAG+TGG | 0.612033 | 7_1:+20893943 | None:intergenic |
| TCCAATGCAAAGAGCACAGG+GGG | 0.615078 | 7_1:-20892799 | Msa1013840:CDS |
| GTTGCTGAGAGCTGTGTGAG+TGG | 0.619632 | 7_1:+20894072 | None:intergenic |
| AACAAAGATAGAGTCACAAG+TGG | 0.633558 | 7_1:-20892948 | Msa1013840:CDS |
| ATTTGTAGTGGATGAATTTG+GGG | 0.649171 | 7_1:+20893955 | None:intergenic |
| TGTATACTGAATTTAAAACA+AGG | 0.682646 | 7_1:+20897538 | None:intergenic |
| ACTTGTGAAGAACCTACGCA+TGG | 0.684270 | 7_1:-20892120 | Msa1013840:CDS |
| ATCCAATGCAAAGAGCACAG+GGG | 0.772272 | 7_1:-20892800 | Msa1013840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTGAAAATAATTTTAATT+AGG | - | chr7_1:20894197-20894216 | Msa1013840:CDS | 10.0% |
| !!! | CTTGAAAATAATTTTAATTA+GGG | - | chr7_1:20894198-20894217 | Msa1013840:CDS | 10.0% |
| !! | TATATTGTTTAATACTAATA+TGG | - | chr7_1:20894422-20894441 | Msa1013840:intron | 10.0% |
| !! | ATATTGTTTAATACTAATAT+GGG | - | chr7_1:20894423-20894442 | Msa1013840:intron | 10.0% |
| !! | AAAAATAATTGTCAATTTAT+TGG | - | chr7_1:20896118-20896137 | Msa1013840:intron | 10.0% |
| !!! | TAATACAATTTTTTAGTTTT+TGG | - | chr7_1:20897016-20897035 | Msa1013840:intron | 10.0% |
| !!! | AATCTTAATTATTTTATAGA+TGG | - | chr7_1:20897321-20897340 | Msa1013840:intron | 10.0% |
| !! | TAAAAAAATAGCATTAGAAT+AGG | - | chr7_1:20892348-20892367 | Msa1013840:intron | 15.0% |
| !! | TAAAAAAATAGCATTAGAAT+AGG | - | chr7_1:20892348-20892367 | Msa1013840:intron | 15.0% |
| !! | AATATAAACATAGTACAAAA+TGG | + | chr7_1:20894572-20894591 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAAGAAGCTAAAA+TGG | - | chr7_1:20894601-20894620 | Msa1013840:intron | 15.0% |
| !!! | TTGTAGAAACATTATATTTT+AGG | + | chr7_1:20894869-20894888 | None:intergenic | 15.0% |
| !! | ATCAAAAGATATTCAATATT+TGG | + | chr7_1:20895996-20896015 | None:intergenic | 15.0% |
| !! | AGTAAATGAATAAAGAAATA+TGG | - | chr7_1:20896198-20896217 | Msa1013840:intron | 15.0% |
| !!! | TAAGTTTAAAACATAATTAG+TGG | - | chr7_1:20896260-20896279 | Msa1013840:intron | 15.0% |
| !! | ATACAAAAATACTATAATCT+TGG | - | chr7_1:20896378-20896397 | Msa1013840:intron | 15.0% |
| !! | TGTATTAAAAAAAATGTTAG+TGG | + | chr7_1:20897003-20897022 | None:intergenic | 15.0% |
| !! | TATAATAATAGTAATAGTGA+TGG | + | chr7_1:20897044-20897063 | None:intergenic | 15.0% |
| !! | ATAATTGTTATCATCTTATA+AGG | - | chr7_1:20897093-20897112 | Msa1013840:intron | 15.0% |
| !!! | TGTATACTGAATTTAAAACA+AGG | + | chr7_1:20891957-20891976 | None:intergenic | 20.0% |
| !!! | TCTTATTTATAGAAGGAAAT+TGG | + | chr7_1:20892151-20892170 | None:intergenic | 20.0% |
| !!! | TCTTATTTATAGAAGGAAAT+TGG | + | chr7_1:20892151-20892170 | None:intergenic | 20.0% |
| !! | CATTTGTGAATTTAGAAAAT+AGG | + | chr7_1:20894085-20894104 | None:intergenic | 20.0% |
| !!! | CTATTTTCTAAATTCACAAA+TGG | - | chr7_1:20894083-20894102 | Msa1013840:CDS | 20.0% |
| !!! | TTATCCATTTTGTTTGTAAT+AGG | + | chr7_1:20894365-20894384 | None:intergenic | 20.0% |
| !! | CATTTGTGAATTTAGAAAAT+AGG | + | chr7_1:20894085-20894104 | None:intergenic | 20.0% |
| !!! | CTATTTTCTAAATTCACAAA+TGG | - | chr7_1:20894083-20894102 | Msa1013840:CDS | 20.0% |
| !! | GTTAATGTTATGAAATGTTT+AGG | + | chr7_1:20894823-20894842 | None:intergenic | 20.0% |
| !!! | TTTTAGAATATAAGGTAACA+AGG | + | chr7_1:20895015-20895034 | None:intergenic | 20.0% |
| !!! | CTTATGGTTTTTAGAATATA+AGG | + | chr7_1:20895023-20895042 | None:intergenic | 20.0% |
| !! | CATTTGTGAATTTCAAAAAT+AGG | + | chr7_1:20895219-20895238 | None:intergenic | 20.0% |
| !!! | CTATTTTTGAAATTCACAAA+TGG | - | chr7_1:20895217-20895236 | Msa1013840:intron | 20.0% |
| !!! | ATTAAATTTTGTTCGATGAA+AGG | + | chr7_1:20895945-20895964 | None:intergenic | 20.0% |
| !! | ATGAATAAAGAAATATGGTT+TGG | - | chr7_1:20896203-20896222 | Msa1013840:intron | 20.0% |
| !!! | GTGGTAAAAAATATTTTTGA+CGG | - | chr7_1:20896287-20896306 | Msa1013840:intron | 20.0% |
| !! | ATAATCTTGGTTACATTATT+TGG | - | chr7_1:20896391-20896410 | Msa1013840:intron | 20.0% |
| !! | CGATATTGTAAAAATATGTT+AGG | - | chr7_1:20896433-20896452 | Msa1013840:intron | 20.0% |
| !! | TATTGTAAAAATATGTTAGG+TGG | - | chr7_1:20896436-20896455 | Msa1013840:intron | 20.0% |
| !! | ATGTTAGTGGTAAAATTAAA+GGG | + | chr7_1:20896990-20897009 | None:intergenic | 20.0% |
| !! | AATGTTAGTGGTAAAATTAA+AGG | + | chr7_1:20896991-20897010 | None:intergenic | 20.0% |
| !!! | TATAAGGAGTATTTTATTCT+AGG | - | chr7_1:20897109-20897128 | Msa1013840:intron | 20.0% |
| !!! | ACTACAACATTTTTTGTTTT+AGG | - | chr7_1:20897144-20897163 | Msa1013840:intron | 20.0% |
| !!! | ATTTTGTTGTCTTTTGATTT+AGG | - | chr7_1:20897260-20897279 | Msa1013840:intron | 20.0% |
| !!! | ATTATTTTATAGATGGATGA+AGG | - | chr7_1:20897328-20897347 | Msa1013840:intron | 20.0% |
| !! | GTAAAATTGTACATCAATAA+GGG | + | chr7_1:20897483-20897502 | None:intergenic | 20.0% |
| !! | AGTAAAATTGTACATCAATA+AGG | + | chr7_1:20897484-20897503 | None:intergenic | 20.0% |
| !!! | AATTATATTTCCTTTTTGGC+TGG | + | chr7_1:20892039-20892058 | None:intergenic | 25.0% |
| !! | CTGCAATTATATTTCCTTTT+TGG | + | chr7_1:20892043-20892062 | None:intergenic | 25.0% |
| ! | TAGTTGAGAAAATTCAACTT+TGG | + | chr7_1:20892070-20892089 | None:intergenic | 25.0% |
| ! | ATTTAAAGAGAAATTGTCCA+GGG | - | chr7_1:20892855-20892874 | Msa1013840:CDS | 25.0% |
| ! | AAAGATTAAGTATGTCCTTA+TGG | - | chr7_1:20892958-20892977 | Msa1013840:CDS | 25.0% |
| !!! | AATTATTTTTCCTTTTTGGC+TGG | + | chr7_1:20893474-20893493 | None:intergenic | 25.0% |
| !!! | CTGCAATTATTTTTCCTTTT+TGG | + | chr7_1:20893478-20893497 | None:intergenic | 25.0% |
| ! | AGTTGAGAAAATTACAACTT+TGG | + | chr7_1:20893505-20893524 | None:intergenic | 25.0% |
| !! | GATTTGGTAAGAAAATCAAA+AGG | - | chr7_1:20894046-20894065 | Msa1013840:CDS | 25.0% |
| ! | GTGAATTTAGAAAATAGGAA+GGG | + | chr7_1:20894080-20894099 | None:intergenic | 25.0% |
| ! | TGTGAATTTAGAAAATAGGA+AGG | + | chr7_1:20894081-20894100 | None:intergenic | 25.0% |
| ! | GAATCCAATTCTTAAACATT+CGG | - | chr7_1:20894282-20894301 | Msa1013840:intron | 25.0% |
| ! | CTATCCTATTACAAACAAAA+TGG | - | chr7_1:20894358-20894377 | Msa1013840:intron | 25.0% |
| ! | GTGAATTTAGAAAATAGGAA+GGG | + | chr7_1:20894080-20894099 | None:intergenic | 25.0% |
| ! | TGTGAATTTAGAAAATAGGA+AGG | + | chr7_1:20894081-20894100 | None:intergenic | 25.0% |
| !! | TTTTCTAAATTCACAAATGG+TGG | - | chr7_1:20894086-20894105 | Msa1013840:CDS | 25.0% |
| ! | ATGTTATGAAATGTTTAGGT+GGG | + | chr7_1:20894819-20894838 | None:intergenic | 25.0% |
| ! | AATGTTATGAAATGTTTAGG+TGG | + | chr7_1:20894820-20894839 | None:intergenic | 25.0% |
| ! | GTGAATTTCAAAAATAGGAA+GGG | + | chr7_1:20895214-20895233 | None:intergenic | 25.0% |
| ! | TGTGAATTTCAAAAATAGGA+AGG | + | chr7_1:20895215-20895234 | None:intergenic | 25.0% |
| ! | TCCAAATCTATAAGGAAATT+CGG | + | chr7_1:20895329-20895348 | None:intergenic | 25.0% |
| !!! | AATTTGTAGTGGATGAATTT+GGG | + | chr7_1:20895541-20895560 | None:intergenic | 25.0% |
| ! | AAATTGTAAGGAATTTGTAG+TGG | + | chr7_1:20895552-20895571 | None:intergenic | 25.0% |
| ! | ACAAATTCCTTACAATTTAG+TGG | - | chr7_1:20895554-20895573 | Msa1013840:intron | 25.0% |
| ! | TTCAAATCCACTAAATTGTA+AGG | + | chr7_1:20895564-20895583 | None:intergenic | 25.0% |
| !! | TTCATATTTTCCATTTCAGT+TGG | + | chr7_1:20895605-20895624 | None:intergenic | 25.0% |
| ! | TCTTATTCCTAACCTTAAAA+AGG | - | chr7_1:20895751-20895770 | Msa1013840:intron | 25.0% |
| !! | TTACTTCTTCTACCTTTTTA+AGG | + | chr7_1:20895766-20895785 | None:intergenic | 25.0% |
| !!! | ATTTTAAAAGCTAGCTAAGT+TGG | + | chr7_1:20895799-20895818 | None:intergenic | 25.0% |
| ! | CGCTATATTTACAAATTGAA+GGG | + | chr7_1:20896167-20896186 | None:intergenic | 25.0% |
| ! | ACGCTATATTTACAAATTGA+AGG | + | chr7_1:20896168-20896187 | None:intergenic | 25.0% |
| ! | TTAAAACATAATTAGTGGTG+TGG | - | chr7_1:20896265-20896284 | Msa1013840:intron | 25.0% |
| !! | TAGGGAAATATATGTTGATT+CGG | - | chr7_1:20896669-20896688 | Msa1013840:intron | 25.0% |
| ! | AAATTATGGTCGAAATTCAA+AGG | - | chr7_1:20896726-20896745 | Msa1013840:intron | 25.0% |
| ! | TAATATGAAGAGATAAGAGA+TGG | + | chr7_1:20896834-20896853 | None:intergenic | 25.0% |
| ! | AACAAAAAATGTTGTAGTGT+TGG | + | chr7_1:20897142-20897161 | None:intergenic | 25.0% |
| GTATCATCTCTATAACTCTT+AGG | - | chr7_1:20892320-20892339 | Msa1013840:intron | 30.0% | |
| AAATAGCATTAGAATAGGAG+TGG | - | chr7_1:20892353-20892372 | Msa1013840:intron | 30.0% | |
| AATAGCATTAGAATAGGAGT+GGG | - | chr7_1:20892354-20892373 | Msa1013840:intron | 30.0% | |
| AAACACTGTATTGTATCTCT+TGG | - | chr7_1:20892386-20892405 | Msa1013840:intron | 30.0% | |
| AACACTGTATTGTATCTCTT+GGG | - | chr7_1:20892387-20892406 | Msa1013840:intron | 30.0% | |
| TTCACATAGTGATAATTCTC+TGG | - | chr7_1:20892442-20892461 | Msa1013840:intron | 30.0% | |
| CTAAGAATTGTGATATCTCA+CGG | + | chr7_1:20892607-20892626 | None:intergenic | 30.0% | |
| ! | AAAGAAGTGTGATATTGTGA+AGG | - | chr7_1:20892671-20892690 | Msa1013840:intron | 30.0% |
| ! | TTTGATGACAGAATCAACTT+TGG | - | chr7_1:20892764-20892783 | Msa1013840:CDS | 30.0% |
| CAATCAAGATTACACAAGTA+TGG | - | chr7_1:20892821-20892840 | Msa1013840:CDS | 30.0% | |
| CATTTAAAGAGAAATTGTCC+AGG | - | chr7_1:20892854-20892873 | Msa1013840:CDS | 30.0% | |
| TTTAAAGAGAAATTGTCCAG+GGG | - | chr7_1:20892856-20892875 | Msa1013840:CDS | 30.0% | |
| !! | GCAATAATTGTCCTTTTTCA+TGG | + | chr7_1:20892997-20893016 | None:intergenic | 30.0% |
| AAAAGGACAATTATTGCTAG+CGG | - | chr7_1:20893000-20893019 | Msa1013840:CDS | 30.0% | |
| CAAGTGAAGTATACTCTTTA+TGG | - | chr7_1:20893179-20893198 | Msa1013840:intron | 30.0% | |
| TGAAGTATACTCTTTATGGT+GGG | - | chr7_1:20893183-20893202 | Msa1013840:intron | 30.0% | |
| TTGTCGGTATAGATAATAGA+AGG | - | chr7_1:20893212-20893231 | Msa1013840:intron | 30.0% | |
| TGTCGGTATAGATAATAGAA+GGG | - | chr7_1:20893213-20893232 | Msa1013840:intron | 30.0% | |
| GGAAGAACAACAATTTATGT+TGG | - | chr7_1:20893249-20893268 | Msa1013840:intron | 30.0% | |
| !! | TAATTTTCTCAACTAGCTTG+CGG | - | chr7_1:20893511-20893530 | Msa1013840:intron | 30.0% |
| GTATCATCTCTATAACTCTT+AGG | - | chr7_1:20892320-20892339 | Msa1013840:intron | 30.0% | |
| AAATAGCATTAGAATAGGAG+TGG | - | chr7_1:20892353-20892372 | Msa1013840:intron | 30.0% | |
| AATAGCATTAGAATAGGAGT+GGG | - | chr7_1:20892354-20892373 | Msa1013840:intron | 30.0% | |
| AAACACTGTATTGTATCTCT+TGG | - | chr7_1:20892386-20892405 | Msa1013840:intron | 30.0% | |
| AACACTGTATTGTATCTCTT+GGG | - | chr7_1:20892387-20892406 | Msa1013840:intron | 30.0% | |
| TTCACATAGTGATAATTCTC+TGG | - | chr7_1:20892442-20892461 | Msa1013840:intron | 30.0% | |
| ACATATTCCGAATACAAAGT+GGG | + | chr7_1:20894239-20894258 | None:intergenic | 30.0% | |
| AACATATTCCGAATACAAAG+TGG | + | chr7_1:20894240-20894259 | None:intergenic | 30.0% | |
| TTTGCCGAATGTTTAAGAAT+TGG | + | chr7_1:20894289-20894308 | None:intergenic | 30.0% | |
| ! | ACACTCAACTTGAAATGTTT+TGG | + | chr7_1:20894528-20894547 | None:intergenic | 30.0% |
| ATTATGTTAGCTGAAAAGTC+TGG | - | chr7_1:20894624-20894643 | Msa1013840:intron | 30.0% | |
| !! | TAAGAAAGCATTTGTATGTG+AGG | + | chr7_1:20894712-20894731 | None:intergenic | 30.0% |
| !!! | CTTGAGTTTTTTCAGAAAGA+AGG | + | chr7_1:20894760-20894779 | None:intergenic | 30.0% |
| ! | GAAATCAAAGCTACTTTCAA+AGG | + | chr7_1:20894789-20894808 | None:intergenic | 30.0% |
| !!! | CTAGAAATTTCCTTTTTTGC+AGG | - | chr7_1:20895265-20895284 | Msa1013840:intron | 30.0% |
| CGAATACAATTTAATTGCTG+AGG | - | chr7_1:20895295-20895314 | Msa1013840:intron | 30.0% | |
| CCAAATCTATAAGGAAATTC+GGG | + | chr7_1:20895328-20895347 | None:intergenic | 30.0% | |
| !! | CTGTTGATTGTTTTGTTCTT+GGG | + | chr7_1:20895384-20895403 | None:intergenic | 30.0% |
| !! | ACTGTTGATTGTTTTGTTCT+TGG | + | chr7_1:20895385-20895404 | None:intergenic | 30.0% |
| !! | AGAAGAAAGTTTTGGTGAAA+AGG | + | chr7_1:20895477-20895496 | None:intergenic | 30.0% |
| ! | GATGAGTTAGAAGAAAGTTT+TGG | + | chr7_1:20895485-20895504 | None:intergenic | 30.0% |
| !! | ATTTGTAGTGGATGAATTTG+GGG | + | chr7_1:20895540-20895559 | None:intergenic | 30.0% |
| !! | GAATTTGTAGTGGATGAATT+TGG | + | chr7_1:20895542-20895561 | None:intergenic | 30.0% |
| !!! | TCTTCTACCTTTTTAAGGTT+AGG | + | chr7_1:20895761-20895780 | None:intergenic | 30.0% |
| !!! | TAAAAAGCGTTTGGAAGTTT+TGG | - | chr7_1:20896505-20896524 | Msa1013840:intron | 30.0% |
| GGGGCTTATAGTTAAAATTA+TGG | - | chr7_1:20896712-20896731 | Msa1013840:intron | 30.0% | |
| ! | AATAGTAGTGTCTTACCTTT+TGG | - | chr7_1:20896767-20896786 | Msa1013840:intron | 30.0% |
| GTGGAGAATGCTTAATTATA+TGG | + | chr7_1:20896861-20896880 | None:intergenic | 30.0% | |
| !!! | GTTTGAATCATCTTGTTTTG+TGG | + | chr7_1:20896880-20896899 | None:intergenic | 30.0% |
| CAACACCAAAACAATCAAAA+GGG | - | chr7_1:20896950-20896969 | Msa1013840:intron | 30.0% | |
| !! | CTTTACCCTTTTGATTGTTT+TGG | + | chr7_1:20896958-20896977 | None:intergenic | 30.0% |
| ! | TATTTGTCACTCTTGTTTAC+AGG | + | chr7_1:20897457-20897476 | None:intergenic | 30.0% |
| GGAAGAAATCAACAACATGT+TGG | - | chr7_1:20891997-20892016 | Msa1013840:three_prime_UTR | 35.0% | |
| !! | GAATTTTCTCAACTAGCTTG+CGG | - | chr7_1:20892075-20892094 | Msa1013840:exon | 35.0% |
| !! | CCTGCTGTCTTATTTATAGA+AGG | + | chr7_1:20892158-20892177 | None:intergenic | 35.0% |
| CCTTCTATAAATAAGACAGC+AGG | - | chr7_1:20892155-20892174 | Msa1013840:CDS | 35.0% | |
| AGTGATAATTCTCTGGTTGT+CGG | - | chr7_1:20892449-20892468 | Msa1013840:intron | 35.0% | |
| CACAACACAAGAATATAACG+TGG | + | chr7_1:20892516-20892535 | None:intergenic | 35.0% | |
| ACAATTCTTAGTATGCTCTG+TGG | - | chr7_1:20892616-20892635 | Msa1013840:intron | 35.0% | |
| !!! | CACACTTCTTTTTTCTGATG+TGG | + | chr7_1:20892662-20892681 | None:intergenic | 35.0% |
| TTACACAAGTATGGAATGTC+TGG | - | chr7_1:20892830-20892849 | Msa1013840:CDS | 35.0% | |
| TACACAAGTATGGAATGTCT+GGG | - | chr7_1:20892831-20892850 | Msa1013840:CDS | 35.0% | |
| TTAAAGAGAAATTGTCCAGG+GGG | - | chr7_1:20892857-20892876 | Msa1013840:CDS | 35.0% | |
| ! | AGTTTCTGAAAAAGACTCTG+AGG | - | chr7_1:20892883-20892902 | Msa1013840:CDS | 35.0% |
| TAGTAATGTCTCCTTTGTTG+CGG | - | chr7_1:20892913-20892932 | Msa1013840:CDS | 35.0% | |
| TTTCCGCTATACCATGAAAA+AGG | - | chr7_1:20892983-20893002 | Msa1013840:CDS | 35.0% | |
| !! | TGTCCTTTTTCATGGTATAG+CGG | + | chr7_1:20892989-20893008 | None:intergenic | 35.0% |
| GAAACCTTGCTGAAAGATTA+TGG | + | chr7_1:20893127-20893146 | None:intergenic | 35.0% | |
| TTTCGACGTGAAGAAATTCT+TGG | - | chr7_1:20893143-20893162 | Msa1013840:intron | 35.0% | |
| ACGTGAAGAAATTCTTGGAA+TGG | - | chr7_1:20893148-20893167 | Msa1013840:intron | 35.0% | |
| GTGAAGTATACTCTTTATGG+TGG | - | chr7_1:20893182-20893201 | Msa1013840:intron | 35.0% | |
| GAAGTATACTCTTTATGGTG+GGG | - | chr7_1:20893184-20893203 | Msa1013840:intron | 35.0% | |
| GTCGGTATAGATAATAGAAG+GGG | - | chr7_1:20893214-20893233 | Msa1013840:intron | 35.0% | |
| TCGGTATAGATAATAGAAGG+GGG | - | chr7_1:20893215-20893234 | Msa1013840:intron | 35.0% | |
| GCAGTACAAGTATAATTGTG+TGG | - | chr7_1:20893350-20893369 | Msa1013840:intron | 35.0% | |
| !! | CCTGCTGTCTTATTTATAGA+AGG | + | chr7_1:20892158-20892177 | None:intergenic | 35.0% |
| CCTTCTATAAATAAGACAGC+AGG | - | chr7_1:20892155-20892174 | Msa1013840:CDS | 35.0% | |
| AGTGATAATTCTCTGGTTGT+CGG | - | chr7_1:20892449-20892468 | Msa1013840:intron | 35.0% | |
| CACAACACAAGAATATAACG+TGG | + | chr7_1:20892516-20892535 | None:intergenic | 35.0% | |
| TGTTGTGTTGGGAAATAACA+GGG | + | chr7_1:20893985-20894004 | None:intergenic | 35.0% | |
| CATATTCCGAATACAAAGTG+GGG | + | chr7_1:20894238-20894257 | None:intergenic | 35.0% | |
| AATCCACCTTCCAAAAACAT+GGG | + | chr7_1:20894332-20894351 | None:intergenic | 35.0% | |
| !! | CTCAACTTGAAATGTTTTGG+AGG | + | chr7_1:20894525-20894544 | None:intergenic | 35.0% |
| TACATGGAGAAATGCAACAA+AGG | + | chr7_1:20895052-20895071 | None:intergenic | 35.0% | |
| TTTGTTGCATTTCTCCATGT+AGG | - | chr7_1:20895051-20895070 | Msa1013840:intron | 35.0% | |
| TTGTTGCATTTCTCCATGTA+GGG | - | chr7_1:20895052-20895071 | Msa1013840:intron | 35.0% | |
| TCGTTCATTTCCTGCAAAAA+AGG | + | chr7_1:20895278-20895297 | None:intergenic | 35.0% | |
| CCCGAATTTCCTTATAGATT+TGG | - | chr7_1:20895325-20895344 | Msa1013840:intron | 35.0% | |
| GAAGCTCTTCCAAATCTATA+AGG | + | chr7_1:20895337-20895356 | None:intergenic | 35.0% | |
| ! | ATCAACAGTGTTTGACTTCA+AGG | - | chr7_1:20895396-20895415 | Msa1013840:intron | 35.0% |
| TCATGGTCATGATCATATCA+TGG | - | chr7_1:20895676-20895695 | Msa1013840:intron | 35.0% | |
| AAACATAATTAGTGGTGTGG+TGG | - | chr7_1:20896268-20896287 | Msa1013840:intron | 35.0% | |
| !! | GAAAGAGCTTAAAAAGCGTT+TGG | - | chr7_1:20896496-20896515 | Msa1013840:intron | 35.0% |
| AACAAAGATAGAGTCACAAG+TGG | - | chr7_1:20896544-20896563 | Msa1013840:intron | 35.0% | |
| ATCACTATAAATGCCTGGTT+TGG | + | chr7_1:20896576-20896595 | None:intergenic | 35.0% | |
| TTGTCATCACTATAAATGCC+TGG | + | chr7_1:20896581-20896600 | None:intergenic | 35.0% | |
| GTAAACCAACAACACTATGA+AGG | + | chr7_1:20896625-20896644 | None:intergenic | 35.0% | |
| !! | TGTTGGTTTACCATTTCAAG+TGG | - | chr7_1:20896634-20896653 | Msa1013840:intron | 35.0% |
| TCGATGATAGAATCTCCAAA+AGG | + | chr7_1:20896785-20896804 | None:intergenic | 35.0% | |
| !!! | CCTTTTGATTGTTTTGGTGT+TGG | + | chr7_1:20896952-20896971 | None:intergenic | 35.0% |
| CCAACACCAAAACAATCAAA+AGG | - | chr7_1:20896949-20896968 | Msa1013840:intron | 35.0% | |
| AGGCTACAACATGAACATAA+AGG | - | chr7_1:20897348-20897367 | Msa1013840:intron | 35.0% | |
| AACATGAGCAAAGAGTTTGT+TGG | - | chr7_1:20897428-20897447 | Msa1013840:intron | 35.0% | |
| GATTTCTTCCATCGTCTCAA+GGG | + | chr7_1:20891987-20892006 | None:intergenic | 40.0% | |
| TGATTTCTTCCATCGTCTCA+AGG | + | chr7_1:20891988-20892007 | None:intergenic | 40.0% | |
| TTGAGTAAATCCAGAGAGTG+TGG | - | chr7_1:20892279-20892298 | Msa1013840:intron | 40.0% | |
| ! | TGAGTAAATCCAGAGAGTGT+GGG | - | chr7_1:20892280-20892299 | Msa1013840:intron | 40.0% |
| ! | TGTATTTTTCCCACACTCTC+TGG | + | chr7_1:20892292-20892311 | None:intergenic | 40.0% |
| AGAGTGTGGGAAAAATACAC+CGG | - | chr7_1:20892293-20892312 | Msa1013840:intron | 40.0% | |
| TTATAGAGATGATACCCACC+CGG | + | chr7_1:20892315-20892334 | None:intergenic | 40.0% | |
| !!! | AACAGTCGTGGTTTTTTCTC+CGG | - | chr7_1:20892479-20892498 | Msa1013840:intron | 40.0% |
| TAACGTGGAAACTCCAAAAC+CGG | + | chr7_1:20892501-20892520 | None:intergenic | 40.0% | |
| ACCACTGTTGGGAAATAACA+GGG | + | chr7_1:20892569-20892588 | None:intergenic | 40.0% | |
| TACCACTGTTGGGAAATAAC+AGG | + | chr7_1:20892570-20892589 | None:intergenic | 40.0% | |
| !! | TATTGTGAAGGTGCTGAAGA+AGG | - | chr7_1:20892683-20892702 | Msa1013840:intron | 40.0% |
| !! | ATTGTGAAGGTGCTGAAGAA+GGG | - | chr7_1:20892684-20892703 | Msa1013840:intron | 40.0% |
| !! | ACAGAATCAACTTTGGCTTG+TGG | - | chr7_1:20892771-20892790 | Msa1013840:CDS | 40.0% |
| CTTGTGGAAACTACAAGTCA+AGG | - | chr7_1:20892787-20892806 | Msa1013840:CDS | 40.0% | |
| AACTACAAGTCAAGGATGTG+CGG | - | chr7_1:20892795-20892814 | Msa1013840:CDS | 40.0% | |
| AGTAATGTCTCCTTTGTTGC+GGG | - | chr7_1:20892914-20892933 | Msa1013840:CDS | 40.0% | |
| ATTATCATCTCCCGCAACAA+AGG | + | chr7_1:20892927-20892946 | None:intergenic | 40.0% | |
| ! | GGTATAGCGGAAATACCATA+AGG | + | chr7_1:20892976-20892995 | None:intergenic | 40.0% |
| TGTGTGATGAGATATGTCGA+TGG | - | chr7_1:20893065-20893084 | Msa1013840:intron | 40.0% | |
| TGCACCATAATCTTTCAGCA+AGG | - | chr7_1:20893120-20893139 | Msa1013840:intron | 40.0% | |
| ! | TTATGGTGGGGTATGATTGT+CGG | - | chr7_1:20893196-20893215 | Msa1013840:intron | 40.0% |
| ATGAAAGAGCTTCTGCTTGA+GGG | - | chr7_1:20893373-20893392 | Msa1013840:intron | 40.0% | |
| ACACTGAGTGAAAGCAAAAG+TGG | - | chr7_1:20893610-20893629 | Msa1013840:intron | 40.0% | |
| TTGAGTAAATCCAGAGAGTG+TGG | - | chr7_1:20892279-20892298 | Msa1013840:intron | 40.0% | |
| ! | TGAGTAAATCCAGAGAGTGT+GGG | - | chr7_1:20892280-20892299 | Msa1013840:intron | 40.0% |
| ! | TGTATTTTTCCCACACTCTC+TGG | + | chr7_1:20892292-20892311 | None:intergenic | 40.0% |
| AGAGTGTGGGAAAAATACAC+CGG | - | chr7_1:20892293-20892312 | Msa1013840:intron | 40.0% | |
| TTATAGAGATGATACCCACC+CGG | + | chr7_1:20892315-20892334 | None:intergenic | 40.0% | |
| !!! | CGTGGTTTTTTCTCTGGTTT+TGG | - | chr7_1:20893901-20893920 | Msa1013840:CDS | 40.0% |
| GTGTTGTGTTGGGAAATAAC+AGG | + | chr7_1:20893986-20894005 | None:intergenic | 40.0% | |
| GTTCAATGCTGTGTTGTGTT+GGG | + | chr7_1:20893996-20894015 | None:intergenic | 40.0% | |
| TATCATCATCAACCAACAGC+TGG | - | chr7_1:20894017-20894036 | Msa1013840:CDS | 40.0% | |
| CAAATCAGATAACCAGCTGT+TGG | + | chr7_1:20894032-20894051 | None:intergenic | 40.0% | |
| CAACAGCTGGTTATCTGATT+TGG | - | chr7_1:20894030-20894049 | Msa1013840:CDS | 40.0% | |
| GCTTTACCCCACTTTGTATT+CGG | - | chr7_1:20894229-20894248 | Msa1013840:intron | 40.0% | |
| !!! | TAAACCCCCATGTTTTTGGA+AGG | - | chr7_1:20894323-20894342 | Msa1013840:intron | 40.0% |
| ATCCACCTTCCAAAAACATG+GGG | + | chr7_1:20894331-20894350 | None:intergenic | 40.0% | |
| CAATCCACCTTCCAAAAACA+TGG | + | chr7_1:20894333-20894352 | None:intergenic | 40.0% | |
| GCAACAAAGGACATGACTTA+TGG | + | chr7_1:20895039-20895058 | None:intergenic | 40.0% | |
| CCATTATGAGCAAGTTTGGT+TGG | + | chr7_1:20895083-20895102 | None:intergenic | 40.0% | |
| ! | CCAACCAAACTTGCTCATAA+TGG | - | chr7_1:20895080-20895099 | Msa1013840:intron | 40.0% |
| TTGGCCATTATGAGCAAGTT+TGG | + | chr7_1:20895087-20895106 | None:intergenic | 40.0% | |
| TGCACTTACTCGTTTCCAAA+AGG | - | chr7_1:20895179-20895198 | Msa1013840:intron | 40.0% | |
| ! | GAAGGGTAGATCATACCTTT+TGG | + | chr7_1:20895197-20895216 | None:intergenic | 40.0% |
| !! | TTTGGGGTGTTGTCAAAACA+TGG | + | chr7_1:20895524-20895543 | None:intergenic | 40.0% |
| ! | TTTTCTCGATGACTCTTCTG+AGG | + | chr7_1:20895642-20895661 | None:intergenic | 40.0% |
| CAGAAGAGTCATCGAGAAAA+AGG | - | chr7_1:20895642-20895661 | Msa1013840:intron | 40.0% | |
| AAAAGGTCTCGTGGTAATCA+TGG | - | chr7_1:20895659-20895678 | Msa1013840:intron | 40.0% | |
| ACTCTTGCTTCCACTTGAAA+TGG | + | chr7_1:20896647-20896666 | None:intergenic | 40.0% | |
| AAGTGGAAGCAAGAGTCTTA+GGG | - | chr7_1:20896651-20896670 | Msa1013840:intron | 40.0% | |
| !! | GTAAAATTAAAGGGTGCTGG+TGG | + | chr7_1:20896981-20897000 | None:intergenic | 40.0% |
| ! | GTGGTAAAATTAAAGGGTGC+TGG | + | chr7_1:20896984-20897003 | None:intergenic | 40.0% |
| AATCCGTTGCCTAAACGTTT+AGG | - | chr7_1:20897198-20897217 | Msa1013840:intron | 40.0% | |
| CAACCTAAACGTTTAGGCAA+CGG | + | chr7_1:20897204-20897223 | None:intergenic | 40.0% | |
| !! | TTGCCTAAACGTTTAGGTTG+CGG | - | chr7_1:20897204-20897223 | Msa1013840:intron | 40.0% |
| AATCCGCAACCTAAACGTTT+AGG | + | chr7_1:20897210-20897229 | None:intergenic | 40.0% | |
| AAGTGTTACCCTTGAGACGA+TGG | - | chr7_1:20891976-20891995 | Msa1013840:three_prime_UTR | 45.0% | |
| ACACTGAGTGAAAGCAGAAG+TGG | - | chr7_1:20892196-20892215 | Msa1013840:intron | 45.0% | |
| ! | TGTGTGTAGAAGTGTGTGAG+AGG | - | chr7_1:20892244-20892263 | Msa1013840:intron | 45.0% |
| GAGTGTGGGAAAAATACACC+GGG | - | chr7_1:20892294-20892313 | Msa1013840:intron | 45.0% | |
| TAGAATAGGAGTGGGTCTCA+CGG | - | chr7_1:20892362-20892381 | Msa1013840:intron | 45.0% | |
| !!! | CGTGGTTTTTTCTCCGGTTT+TGG | - | chr7_1:20892485-20892504 | Msa1013840:intron | 45.0% |
| ! | AGCGGATTCAGAACAACACA+CGG | - | chr7_1:20893018-20893037 | Msa1013840:CDS | 45.0% |
| !! | CATTGGTTGGCATTGATGCA+GGG | - | chr7_1:20893042-20893061 | Msa1013840:intron | 45.0% |
| TTATGGTGCAACTCCCATGT+TGG | + | chr7_1:20893110-20893129 | None:intergenic | 45.0% | |
| TAGATAATAGAAGGGGGAGC+AGG | - | chr7_1:20893221-20893240 | Msa1013840:intron | 45.0% | |
| GATGAAAGAGCTTCTGCTTG+AGG | - | chr7_1:20893372-20893391 | Msa1013840:intron | 45.0% | |
| TGAAAGAGCTTCTGCTTGAG+GGG | - | chr7_1:20893374-20893393 | Msa1013840:intron | 45.0% | |
| ! | TGCGAGGATAGTTTCCCTTT+TGG | - | chr7_1:20893411-20893430 | Msa1013840:intron | 45.0% |
| ! | AGGATAGTTTCCCTTTTGGC+TGG | - | chr7_1:20893415-20893434 | Msa1013840:intron | 45.0% |
| AATTGTTGGTCCCACGTGAA+AGG | - | chr7_1:20893446-20893465 | Msa1013840:intron | 45.0% | |
| ! | TGTGTGTAGAAGTGTGTGAG+AGG | - | chr7_1:20892244-20892263 | Msa1013840:intron | 45.0% |
| GAGTGTGGGAAAAATACACC+GGG | - | chr7_1:20892294-20892313 | Msa1013840:intron | 45.0% | |
| TAGAATAGGAGTGGGTCTCA+CGG | - | chr7_1:20892362-20892381 | Msa1013840:intron | 45.0% | |
| !! | CTGGTTGTCGGTTTAGACAA+CGG | - | chr7_1:20892461-20892480 | Msa1013840:intron | 45.0% |
| !!! | AACGGTCGTGGTTTTTTCTC+TGG | - | chr7_1:20893895-20893914 | Msa1013840:CDS | 45.0% |
| CGTTCAATGCTGTGTTGTGT+TGG | + | chr7_1:20893997-20894016 | None:intergenic | 45.0% | |
| TACTATGAGTACCCGTTGCA+CGG | - | chr7_1:20894121-20894140 | Msa1013840:CDS | 45.0% | |
| !! | AGTTTTAACGTCCCGTGCAA+CGG | + | chr7_1:20894136-20894155 | None:intergenic | 45.0% |
| CCAAAAACATGGGGGTTTAC+TGG | + | chr7_1:20894322-20894341 | None:intergenic | 45.0% | |
| ! | CCAGTAAACCCCCATGTTTT+TGG | - | chr7_1:20894319-20894338 | Msa1013840:intron | 45.0% |
| TCCACCTTCCAAAAACATGG+GGG | + | chr7_1:20894330-20894349 | None:intergenic | 45.0% | |
| CCTTCTGCACTCTTTATGCT+GGG | + | chr7_1:20894654-20894673 | None:intergenic | 45.0% | |
| TTGGTTGGATTTGCCCTACA+TGG | + | chr7_1:20895068-20895087 | None:intergenic | 45.0% | |
| ACCAGTGTCTCCAACTGAAA+TGG | - | chr7_1:20895592-20895611 | Msa1013840:intron | 45.0% | |
| TCCATTTCAGTTGGAGACAC+TGG | + | chr7_1:20895596-20895615 | None:intergenic | 45.0% | |
| TCATCGAGAAAAAGGTCTCG+TGG | - | chr7_1:20895650-20895669 | Msa1013840:intron | 45.0% | |
| AAGGCTCTCATCACATGAAG+AGG | + | chr7_1:20896606-20896625 | None:intergenic | 45.0% | |
| GAGAGCCTTCATAGTGTTGT+TGG | - | chr7_1:20896617-20896636 | Msa1013840:intron | 45.0% | |
| CAAGTGGAAGCAAGAGTCTT+AGG | - | chr7_1:20896650-20896669 | Msa1013840:intron | 45.0% | |
| ! | GATCCAATGCAAAGAGCACA+GGG | - | chr7_1:20896691-20896710 | Msa1013840:intron | 45.0% |
| ! | ATCCAATGCAAAGAGCACAG+GGG | - | chr7_1:20896692-20896711 | Msa1013840:intron | 45.0% |
| !! | ACGTTTAGGTTGCGGATTTC+AGG | - | chr7_1:20897212-20897231 | Msa1013840:intron | 45.0% |
| ACTTGTGAAGAACCTACGCA+TGG | - | chr7_1:20897372-20897391 | Msa1013840:intron | 45.0% | |
| !!! | TACATTTTTTTTTAATATAT+TGG | + | chr7_1:20895106-20895125 | None:intergenic | 5.0% |
| !!! | CATTTATATAATTATTTTAA+AGG | - | chr7_1:20895899-20895918 | Msa1013840:intron | 5.0% |
| ACATGTTGGTCCCACGTGAA+AGG | - | chr7_1:20892011-20892030 | Msa1013840:three_prime_UTR | 50.0% | |
| !! | GTGAAAGGTGCCAGCCAAAA+AGG | - | chr7_1:20892026-20892045 | Msa1013840:three_prime_UTR | 50.0% |
| TGTGGGAAAAATACACCGGG+TGG | - | chr7_1:20892297-20892316 | Msa1013840:intron | 50.0% | |
| GTGGGAAAAATACACCGGGT+GGG | - | chr7_1:20892298-20892317 | Msa1013840:intron | 50.0% | |
| AGAATAGGAGTGGGTCTCAC+GGG | - | chr7_1:20892363-20892382 | Msa1013840:intron | 50.0% | |
| ! | GTCGGTTTAGACAACAGTCG+TGG | - | chr7_1:20892467-20892486 | Msa1013840:intron | 50.0% |
| GTTGGGAAATAACAGGGCTG+AGG | + | chr7_1:20892563-20892582 | None:intergenic | 50.0% | |
| !! | GCCCTGTTATTTCCCAACAG+TGG | - | chr7_1:20892565-20892584 | Msa1013840:intron | 50.0% |
| ! | GAAGCTCTGGTACCACTGTT+GGG | + | chr7_1:20892580-20892599 | None:intergenic | 50.0% |
| ! | TGAAGCTCTGGTACCACTGT+TGG | + | chr7_1:20892581-20892600 | None:intergenic | 50.0% |
| ATCTCACGGAACTGAAGCTC+TGG | + | chr7_1:20892593-20892612 | None:intergenic | 50.0% | |
| ! | TTTTCAGAAACTGCTCCCCC+TGG | + | chr7_1:20892875-20892894 | None:intergenic | 50.0% |
| GCGGATTCAGAACAACACAC+GGG | - | chr7_1:20893019-20893038 | Msa1013840:CDS | 50.0% | |
| TCAGAACAACACACGGGCAT+TGG | - | chr7_1:20893025-20893044 | Msa1013840:CDS | 50.0% | |
| !! | AACAACACACGGGCATTGGT+TGG | - | chr7_1:20893029-20893048 | Msa1013840:CDS | 50.0% |
| !! | GCATTGGTTGGCATTGATGC+AGG | - | chr7_1:20893041-20893060 | Msa1013840:intron | 50.0% |
| AACTCCCTGGAAGCCAACAT+GGG | - | chr7_1:20893094-20893113 | Msa1013840:intron | 50.0% | |
| !! | AACTCCCATGTTGGCTTCCA+GGG | + | chr7_1:20893101-20893120 | None:intergenic | 50.0% |
| TCGAAAGTCCTCCTGACCAA+GGG | - | chr7_1:20893294-20893313 | Msa1013840:intron | 50.0% | |
| GGTGAGCATGATGAATTGCG+AGG | - | chr7_1:20893395-20893414 | Msa1013840:intron | 50.0% | |
| !! | AGTTTCCCTTTTGGCTGGAG+AGG | - | chr7_1:20893420-20893439 | Msa1013840:intron | 50.0% |
| !! | GTTTCCCTTTTGGCTGGAGA+GGG | - | chr7_1:20893421-20893440 | Msa1013840:intron | 50.0% |
| TTCTCCCTCTCCAGCCAAAA+GGG | + | chr7_1:20893428-20893447 | None:intergenic | 50.0% | |
| ATTCTCCCTCTCCAGCCAAA+AGG | + | chr7_1:20893429-20893448 | None:intergenic | 50.0% | |
| !! | GTGAAAGGTGCCAGCCAAAA+AGG | - | chr7_1:20892026-20892045 | Msa1013840:three_prime_UTR | 50.0% |
| TGTGGGAAAAATACACCGGG+TGG | - | chr7_1:20892297-20892316 | Msa1013840:intron | 50.0% | |
| GTGGGAAAAATACACCGGGT+GGG | - | chr7_1:20892298-20892317 | Msa1013840:intron | 50.0% | |
| AGAATAGGAGTGGGTCTCAC+GGG | - | chr7_1:20892363-20892382 | Msa1013840:intron | 50.0% | |
| ACTATGAGTACCCGTTGCAC+GGG | - | chr7_1:20894122-20894141 | Msa1013840:CDS | 50.0% | |
| !! | GTTTTAACGTCCCGTGCAAC+GGG | + | chr7_1:20894135-20894154 | None:intergenic | 50.0% |
| !!! | ACCCCCATGTTTTTGGAAGG+TGG | - | chr7_1:20894326-20894345 | Msa1013840:intron | 50.0% |
| ! | CCCAGCATAAAGAGTGCAGA+AGG | - | chr7_1:20894651-20894670 | Msa1013840:intron | 50.0% |
| GCCTTCTGCACTCTTTATGC+TGG | + | chr7_1:20894655-20894674 | None:intergenic | 50.0% | |
| CAAGTGGTTGTGACCAAACC+AGG | - | chr7_1:20896560-20896579 | Msa1013840:intron | 50.0% | |
| ! | GGATCCAATGCAAAGAGCAC+AGG | - | chr7_1:20896690-20896709 | Msa1013840:intron | 50.0% |
| ! | TCCAATGCAAAGAGCACAGG+GGG | - | chr7_1:20896693-20896712 | Msa1013840:intron | 50.0% |
| GGTCTCTACCTGAGCAATGA+TGG | + | chr7_1:20896813-20896832 | None:intergenic | 50.0% | |
| ! | CGACGCAAAAGCGTGGTTAA+AGG | - | chr7_1:20897170-20897189 | Msa1013840:intron | 50.0% |
| ACTTCAATGCTGCCATGCGT+AGG | + | chr7_1:20897387-20897406 | None:intergenic | 50.0% | |
| TTGGCTGGCACCTTTCACGT+GGG | + | chr7_1:20892024-20892043 | None:intergenic | 55.0% | |
| TTTGGCTGGCACCTTTCACG+TGG | + | chr7_1:20892025-20892044 | None:intergenic | 55.0% | |
| GACAGCAGGCAATAGCAAGC+AGG | - | chr7_1:20892169-20892188 | Msa1013840:intron | 55.0% | |
| !! | GTGAAGGTGCTGAAGAAGGG+TGG | - | chr7_1:20892687-20892706 | Msa1013840:intron | 55.0% |
| TCGATGGCTGAAGAACTCCC+TGG | - | chr7_1:20893081-20893100 | Msa1013840:intron | 55.0% | |
| GAACTCCCTGGAAGCCAACA+TGG | - | chr7_1:20893093-20893112 | Msa1013840:intron | 55.0% | |
| !! | CAACTCCCATGTTGGCTTCC+AGG | + | chr7_1:20893102-20893121 | None:intergenic | 55.0% |
| TAGAAGGGGGAGCAGGAAAG+CGG | - | chr7_1:20893228-20893247 | Msa1013840:intron | 55.0% | |
| GTCGAAAGTCCTCCTGACCA+AGG | - | chr7_1:20893293-20893312 | Msa1013840:intron | 55.0% | |
| GTACTGCCGTCTGCACTCAA+CGG | + | chr7_1:20893337-20893356 | None:intergenic | 55.0% | |
| GGCTGGAGAGGGAGAATTGT+TGG | - | chr7_1:20893432-20893451 | Msa1013840:intron | 55.0% | |
| TTGGCTGGCACCTTTCACGT+GGG | + | chr7_1:20892024-20892043 | None:intergenic | 55.0% | |
| TTTGGCTGGCACCTTTCACG+TGG | + | chr7_1:20892025-20892044 | None:intergenic | 55.0% | |
| ! | GTCGGTTTAGACAACGGTCG+TGG | - | chr7_1:20893883-20893902 | Msa1013840:CDS | 55.0% |
| GTTGCTGAGAGCTGTGTGAG+TGG | + | chr7_1:20895423-20895442 | None:intergenic | 55.0% | |
| CGACGTGACCATCATTGCTC+AGG | - | chr7_1:20896802-20896821 | Msa1013840:intron | 55.0% | |
| TAGGCAACGACGCAAAAGCG+TGG | - | chr7_1:20897163-20897182 | Msa1013840:intron | 55.0% | |
| TAGGTTGCGGATTTCAGGCG+TGG | - | chr7_1:20897217-20897236 | Msa1013840:intron | 55.0% | |
| CCTGAACACCCTTGGTCAGG+AGG | + | chr7_1:20893305-20893324 | None:intergenic | 60.0% | |
| !! | CCTCCTGACCAAGGGTGTTC+AGG | - | chr7_1:20893302-20893321 | Msa1013840:intron | 60.0% |
| !! | CCTGACCAAGGGTGTTCAGG+CGG | - | chr7_1:20893305-20893324 | Msa1013840:intron | 60.0% |
| CGGGTTCCGTTGAGTGCAGA+CGG | - | chr7_1:20893328-20893347 | Msa1013840:intron | 60.0% | |
| GCCCCCTGTGCTCTTTGCAT+TGG | + | chr7_1:20896697-20896716 | None:intergenic | 60.0% | |
| CCGCCTGAACACCCTTGGTC+AGG | + | chr7_1:20893308-20893327 | None:intergenic | 65.0% | |
| !! | GACCAAGGGTGTTCAGGCGG+CGG | - | chr7_1:20893308-20893327 | Msa1013840:intron | 65.0% |
| !! | ACCAAGGGTGTTCAGGCGGC+GGG | - | chr7_1:20893309-20893328 | Msa1013840:intron | 65.0% |
| ACCCGCCGCCTGAACACCCT+TGG | + | chr7_1:20893313-20893332 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 20891949 | 20897565 | 20891949 | ID=Msa1013840;Name=Msa1013840 |
| chr7_1 | mRNA | 20891949 | 20897565 | 20891949 | ID=Msa1013840-mRNA-1;Parent=Msa1013840;Name=Msa1013840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=46|1|1|1|0.75|0.6|5|145|333 |
| chr7_1 | exon | 20891949 | 20892174 | 20891949 | ID=Msa1013840-mRNA-1:exon:5049;Parent=Msa1013840-mRNA-1 |
| chr7_1 | exon | 20892691 | 20893059 | 20892691 | ID=Msa1013840-mRNA-1:exon:5048;Parent=Msa1013840-mRNA-1 |
| chr7_1 | exon | 20893742 | 20894227 | 20893742 | ID=Msa1013840-mRNA-1:exon:5047;Parent=Msa1013840-mRNA-1 |
| chr7_1 | exon | 20895463 | 20895508 | 20895463 | ID=Msa1013840-mRNA-1:exon:5046;Parent=Msa1013840-mRNA-1 |
| chr7_1 | exon | 20897500 | 20897565 | 20897500 | ID=Msa1013840-mRNA-1:exon:5045;Parent=Msa1013840-mRNA-1 |
| chr7_1 | five_prime_UTR | 20897520 | 20897565 | 20897520 | ID=Msa1013840-mRNA-1:five_prime_utr;Parent=Msa1013840-mRNA-1 |
| chr7_1 | CDS | 20897500 | 20897519 | 20897500 | ID=Msa1013840-mRNA-1:cds;Parent=Msa1013840-mRNA-1 |
| chr7_1 | CDS | 20895463 | 20895508 | 20895463 | ID=Msa1013840-mRNA-1:cds;Parent=Msa1013840-mRNA-1 |
| chr7_1 | CDS | 20893742 | 20894227 | 20893742 | ID=Msa1013840-mRNA-1:cds;Parent=Msa1013840-mRNA-1 |
| chr7_1 | CDS | 20892691 | 20893059 | 20892691 | ID=Msa1013840-mRNA-1:cds;Parent=Msa1013840-mRNA-1 |
| chr7_1 | CDS | 20892094 | 20892174 | 20892094 | ID=Msa1013840-mRNA-1:cds;Parent=Msa1013840-mRNA-1 |
| chr7_1 | three_prime_UTR | 20891949 | 20892093 | 20891949 | ID=Msa1013840-mRNA-1:three_prime_utr;Parent=Msa1013840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
