AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1015000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1015000 MtrunA17_Chr2g0296781 44.061 261 144 2 426 686 166 424 2.36e-67 235
Msa1015000 MtrunA17_Chr8g0363841 31.798 456 247 9 286 687 5 450 2.55e-66 231
Msa1015000 MtrunA17_Chr5g0441581 30.804 448 248 8 288 687 20 453 8.14e-66 230
Msa1015000 MtrunA17_Chr6g0477261 43.295 261 146 2 426 686 55 313 2.18e-65 228
Msa1015000 MtrunA17_Chr1g0202341 32.230 453 240 8 289 686 43 483 1.16e-64 226
Msa1015000 MtrunA17_Chr5g0448761 31.403 449 248 7 294 687 57 500 2.29e-64 228
Msa1015000 MtrunA17_Chr2g0287651 30.068 439 244 7 303 689 81 508 5.97e-62 222
Msa1015000 MtrunA17_Chr3g0080351 28.894 443 252 8 292 686 71 498 7.55e-61 219
Msa1015000 MtrunA17_Chr3g0087691 35.714 364 133 8 1 265 63 424 8.59e-60 210
Msa1015000 MtrunA17_Chr6g0458391 30.366 382 225 4 297 644 225 599 9.98e-59 211
Msa1015000 MtrunA17_Chr2g0287061 32.432 407 217 9 295 671 181 559 5.36e-58 210
Msa1015000 MtrunA17_Chr2g0324011 29.490 451 259 6 288 687 1 443 4.93e-57 204
Msa1015000 MtrunA17_Chr1g0203051 29.812 426 236 7 313 687 95 508 1.03e-55 201
Msa1015000 MtrunA17_Chr1g0196541 37.879 264 162 2 426 689 166 427 1.50e-55 202
Msa1015000 MtrunA17_Chr2g0329031 29.358 436 238 9 303 686 20 437 5.59e-55 201
Msa1015000 MtrunA17_Chr5g0448511 36.398 261 165 1 427 687 13 272 2.71e-54 195
Msa1015000 MtrunA17_Chr1g0207551 29.111 450 249 9 292 686 29 463 2.76e-54 199
Msa1015000 MtrunA17_Chr3g0118611 34.164 281 177 3 403 680 94 369 2.80e-54 199
Msa1015000 MtrunA17_Chr3g0082121 30.115 435 250 9 297 686 43 468 1.92e-53 196
Msa1015000 MtrunA17_Chr5g0440451 36.803 269 165 2 419 687 216 479 1.41e-51 192
Msa1015000 MtrunA17_Chr1g0203721 27.540 443 259 9 299 687 65 499 2.54e-51 191
Msa1015000 MtrunA17_Chr2g0291581 27.907 430 257 7 297 686 71 487 2.38e-49 184
Msa1015000 MtrunA17_Chr1g0198761 27.865 445 251 10 300 682 50 486 7.37e-48 180
Msa1015000 MtrunA17_Chr3g0144591 43.961 207 72 3 1 163 102 308 1.14e-46 174
Msa1015000 MtrunA17_Chr2g0291591 25.000 448 272 7 292 688 59 493 1.13e-44 168
Msa1015000 MtrunA17_Chr1g0164591 35.776 232 147 2 413 644 78 307 1.51e-43 159
Msa1015000 MtrunA17_Chr5g0431001 28.795 448 243 12 284 665 46 483 4.15e-43 162
Msa1015000 MtrunA17_Chr2g0276841 25.446 448 255 11 297 680 70 502 3.21e-36 145
Msa1015000 MtrunA17_Chr2g0294841 24.249 466 275 10 295 690 43 500 8.05e-35 141
Msa1015000 MtrunA17_Chr2g0290391 24.045 445 265 8 293 672 47 483 4.10e-33 135
Msa1015000 MtrunA17_Chr7g0258861 30.208 288 142 6 296 530 9 290 2.49e-28 115
Msa1015000 MtrunA17_Chr7g0231251 32.308 195 88 3 13 163 1 195 6.25e-27 115
Msa1015000 MtrunA17_Chr5g0423361 32.850 207 95 4 1 163 249 455 1.17e-23 106
Msa1015000 MtrunA17_Chr1g0204171 48.864 88 45 0 1 88 226 313 1.72e-23 102
Msa1015000 MtrunA17_Chr2g0306281 50.000 88 44 0 1 88 415 502 1.98e-23 104
Msa1015000 MtrunA17_Chr1g0162511 32.961 179 76 4 1 135 295 473 2.28e-23 103
Msa1015000 MtrunA17_Chr4g0034541 44.872 78 43 0 11 88 1 78 1.64e-20 86.3
Msa1015000 MtrunA17_Chr1g0209991 31.795 195 89 3 13 163 1 195 2.49e-18 88.6
Msa1015000 MtrunA17_Chr7g0272001 40.244 82 49 0 1 82 49 130 6.34e-18 80.9
Msa1015000 MtrunA17_Chr8g0384791 62.264 53 20 0 112 164 55 107 1.60e-17 85.5
Msa1015000 MtrunA17_Chr8g0384791 36.111 144 74 3 140 265 148 291 4.82e-14 74.7
Msa1015000 MtrunA17_Chr3g0079991 38.462 91 56 0 2 92 156 246 8.18e-17 83.2
Msa1015000 MtrunA17_Chr4g0033611 36.641 131 67 5 287 411 67 187 2.65e-15 76.6
Msa1015000 MtrunA17_Chr2g0329421 37.500 112 59 3 296 405 26 128 1.94e-13 70.1
Msa1015000 MtrunA17_Chr1g0149131 30.000 110 77 0 531 640 1 110 1.49e-12 65.1
Msa1015000 MtrunA17_Chr7g0233911 37.069 116 58 4 296 406 33 138 3.74e-12 66.2
Msa1015000 MtrunA17_Chr7g0242971 39.326 89 49 1 177 265 51 134 9.11e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1015000 AT4G38180.1 31.910 445 247 5 294 687 70 509 1.64e-70 245
Msa1015000 AT2G27110.2 28.066 424 242 5 296 680 48 447 1.53e-57 209
Msa1015000 AT2G27110.1 28.066 424 242 5 296 680 48 447 1.53e-57 209
Msa1015000 AT3G22170.2 28.706 425 259 7 295 680 68 487 3.23e-56 206
Msa1015000 AT3G22170.1 28.706 425 259 7 295 680 68 487 3.23e-56 206
Msa1015000 AT3G06250.2 31.068 412 227 7 296 679 189 571 6.48e-55 201
Msa1015000 AT3G06250.1 31.068 412 227 7 296 679 189 571 6.48e-55 201
Msa1015000 AT3G06250.3 31.068 412 227 7 296 679 189 571 6.48e-55 201
Msa1015000 AT2G27110.3 34.902 255 163 1 426 680 51 302 2.21e-54 199
Msa1015000 AT4G15090.1 34.848 264 171 1 423 686 222 484 6.25e-52 193
Msa1015000 AT4G15090.5 34.848 264 171 1 423 686 222 484 6.25e-52 193
Msa1015000 AT4G15090.3 34.848 264 171 1 423 686 222 484 6.25e-52 193
Msa1015000 AT4G15090.2 34.848 264 171 1 423 686 222 484 6.25e-52 193
Msa1015000 AT4G15090.4 34.848 264 171 1 423 686 222 484 6.25e-52 193
Msa1015000 AT1G52520.1 27.523 436 258 7 297 688 85 506 1.30e-50 188
Msa1015000 AT2G32250.5 29.744 390 250 6 300 675 41 420 3.46e-50 187
Msa1015000 AT5G18960.2 29.398 415 233 9 296 679 210 595 3.81e-50 187
Msa1015000 AT5G18960.1 29.398 415 233 9 296 679 210 595 3.81e-50 187
Msa1015000 AT2G32250.6 29.744 390 250 6 300 675 41 420 8.14e-50 187
Msa1015000 AT2G32250.1 29.744 390 250 6 300 675 41 420 8.14e-50 187
Msa1015000 AT2G32250.3 29.744 390 250 6 300 675 41 420 8.14e-50 187
Msa1015000 AT2G32250.2 29.744 390 250 6 300 675 41 420 8.41e-50 187
Msa1015000 AT2G32250.4 29.744 390 250 6 300 675 41 420 8.41e-50 187
Msa1015000 AT2G32250.8 29.716 387 248 6 303 675 3 379 1.07e-49 186
Msa1015000 AT2G32250.7 29.716 387 248 6 303 675 3 379 1.28e-49 186
Msa1015000 AT4G19990.5 29.440 411 252 7 300 680 24 426 3.95e-47 178
Msa1015000 AT4G19990.3 28.605 430 269 7 281 680 5 426 4.95e-47 178
Msa1015000 AT4G19990.4 28.605 430 269 7 281 680 5 426 4.95e-47 178
Msa1015000 AT4G19990.7 28.605 430 269 7 281 680 19 440 5.23e-47 178
Msa1015000 AT4G19990.6 28.605 430 269 7 281 680 5 426 6.66e-47 178
Msa1015000 AT4G19990.2 28.605 430 269 7 281 680 5 426 6.66e-47 178
Msa1015000 AT1G76320.3 27.231 437 247 7 303 686 3 421 2.01e-46 175
Msa1015000 AT4G38170.1 36.398 261 159 4 428 687 20 274 3.75e-46 172
Msa1015000 AT1G76320.1 27.231 437 247 7 303 686 3 421 6.16e-46 175
Msa1015000 AT1G76320.4 27.231 437 247 7 303 686 3 421 6.16e-46 175
Msa1015000 AT1G76320.2 27.231 437 247 7 303 686 3 421 6.84e-46 174
Msa1015000 AT1G80010.1 32.950 261 174 1 429 689 274 533 8.65e-45 171
Msa1015000 AT4G19990.1 29.640 361 231 5 342 680 10 369 6.02e-44 169
Msa1015000 AT1G10240.2 24.943 437 253 11 297 671 48 471 3.82e-32 133
Msa1015000 AT1G10240.1 24.943 437 253 11 297 671 48 471 3.82e-32 133
Msa1015000 AT5G28530.1 30.000 230 157 3 420 647 236 463 7.78e-28 119
Msa1015000 AT5G28530.3 30.000 230 157 3 420 647 236 463 8.62e-28 119
Msa1015000 AT5G28530.2 30.000 230 157 3 420 647 236 463 8.62e-28 119
Msa1015000 AT5G28530.4 24.528 371 245 13 292 647 50 400 1.72e-19 93.6
Msa1015000 AT5G28530.5 24.528 371 245 13 292 647 50 400 1.96e-19 93.2
Msa1015000 AT4G29090.1 42.045 88 51 0 1 88 56 143 1.32e-16 84.0
Msa1015000 ATMG00310.1 33.333 90 60 0 1 90 57 146 2.35e-14 71.6

Find 130 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCACTCCTACCTTATTTC+TGG 0.189761 7_1:+26006733 None:intergenic
ATGTTAACTTGGTTGAATTT+TGG 0.201090 7_1:-26004154 Msa1015000:CDS
TAGTTATCTGGAATCTAAAT+TGG 0.207710 7_1:-26007726 Msa1015000:CDS
TCCTTACCATCCTTCTTATT+TGG 0.212526 7_1:+26005240 None:intergenic
TTTAATTCATCATCACAATT+TGG 0.253101 7_1:+26005426 None:intergenic
TTTCCTGATGCTCCACATTA+TGG 0.258638 7_1:+26006976 None:intergenic
ATTAAATGACCCACTGAATA+AGG 0.268543 7_1:+26007531 None:intergenic
TTGAGTTAGAAAAGAATAAA+TGG 0.272170 7_1:-26004310 Msa1015000:CDS
GGTTGAAGAGCCAACATATC+AGG 0.282962 7_1:+26007552 None:intergenic
CATAGTGCTCACTGGAAAAT+TGG 0.295038 7_1:-26007647 Msa1015000:CDS
TACCTCATACGCATAATAAA+AGG 0.300798 7_1:+26004820 None:intergenic
TGTTGCAATGCTTGGAAAAC+AGG 0.301675 7_1:-26007819 Msa1015000:CDS
TGAAACCACATCCCCAAATA+AGG 0.310942 7_1:+26004736 None:intergenic
AAGTTTCAAGTCATGTGTTT+GGG 0.313111 7_1:-26004387 Msa1015000:CDS
GAAAGTGAGAATTCTTTCTA+TGG 0.315583 7_1:-26004194 Msa1015000:CDS
ACACTTGTTGCCACAACTTC+AGG 0.317306 7_1:+26006945 None:intergenic
CACACCAAGTTCTTAACTTT+GGG 0.320164 7_1:+26007261 None:intergenic
CTATAACGAGCCATGGATAT+TGG 0.322055 7_1:-26007603 Msa1015000:CDS
GATGTGTGGTTCTGACTTGT+AGG 0.322663 7_1:+26006845 None:intergenic
GATTCCAGATAACTACTATT+CGG 0.324610 7_1:+26007734 None:intergenic
AATTCAACCAAGTTAACATT+AGG 0.328343 7_1:+26004158 None:intergenic
AAAGTTTCAAGTCATGTGTT+TGG 0.339166 7_1:-26004388 Msa1015000:CDS
AGGTATGGGTTTCAAAGATT+TGG 0.357716 7_1:-26007852 None:intergenic
CATTCCTCAAACCTTCTAAA+AGG 0.357958 7_1:+26006885 None:intergenic
CTCACTGGAAAATTGGTTCC+GGG 0.360111 7_1:-26007640 Msa1015000:CDS
CAATGATCATTTGCGGAAAC+CGG 0.361766 7_1:-26007319 Msa1015000:CDS
ATTTGCGGAAACCGGGGTAT+TGG 0.362758 7_1:-26007311 Msa1015000:CDS
GAATTCATCCTCATCATTCA+TGG 0.363918 7_1:+26004415 None:intergenic
TTTGGGCATATGGTATTTGT+AGG 0.365666 7_1:-26004769 Msa1015000:CDS
CAAGTCTCTTCAAACTCATT+TGG 0.372368 7_1:+26004353 None:intergenic
CCACACCAAGTTCTTAACTT+TGG 0.380262 7_1:+26007260 None:intergenic
GTTATAATCCAAGCTTTGTT+TGG 0.386217 7_1:-26007703 Msa1015000:CDS
TTACCCGAATAGTAGTTATC+TGG 0.393630 7_1:-26007738 Msa1015000:CDS
GCTCACTGGAAAATTGGTTC+CGG 0.401774 7_1:-26007641 Msa1015000:CDS
ATTCCAGATAACTACTATTC+GGG 0.402868 7_1:+26007735 None:intergenic
AAAGTGTCTTTGAAATATGC+TGG 0.421516 7_1:+26004251 None:intergenic
CATCGACAATCTATTACCTT+TGG 0.423093 7_1:-26004647 Msa1015000:CDS
ATTTGGAAGGCGGAGAAGAA+TGG 0.427059 7_1:-26007393 Msa1015000:intron
CGTATCTATTCCAATGTAAA+GGG 0.428659 7_1:+26006584 None:intergenic
TTATTCCTTATTTGGGGATG+TGG 0.431251 7_1:-26004741 Msa1015000:CDS
CAAATGAGTTTGAAGAGACT+TGG 0.432734 7_1:-26004352 Msa1015000:CDS
CGGGGTATTGGAGTGGCATA+TGG 0.438750 7_1:-26007299 Msa1015000:CDS
TCGTATCTATTCCAATGTAA+AGG 0.440885 7_1:+26006583 None:intergenic
TCCTGCTGGCCCTGATATGT+TGG 0.441861 7_1:-26007562 Msa1015000:CDS
TTACCATAATGTGGAGCATC+AGG 0.445178 7_1:-26006979 Msa1015000:CDS
AAACCTTCTAAAAGGTCCTT+AGG 0.450060 7_1:+26006893 None:intergenic
TCAGCACCAAGGTGGTTGTT+AGG 0.454809 7_1:-26007670 Msa1015000:CDS
GGAGAAGAATGGGTGTTTCT+CGG 0.459004 7_1:-26007382 Msa1015000:CDS
AATAGAAGTGCAACGACATA+AGG 0.460127 7_1:-26004114 Msa1015000:CDS
TCTGAATCCTAATGTTAACT+TGG 0.461262 7_1:-26004165 Msa1015000:CDS
TTTGGAAGGCGGAGAAGAAT+GGG 0.463352 7_1:-26007392 Msa1015000:intron
CTGTTATGTAGGCAGAACTT+TGG 0.464069 7_1:-26006608 Msa1015000:CDS
TGATCGGTTATTATAAGAGT+TGG 0.470629 7_1:+26004542 None:intergenic
AGTTATCTGGAATCTAAATT+GGG 0.474307 7_1:-26007725 Msa1015000:CDS
TTATAAACAATGATCATTTG+CGG 0.478725 7_1:-26007326 Msa1015000:CDS
ATGCTATGCCAAACAAAGCT+TGG 0.480717 7_1:+26007695 None:intergenic
GGCTCTTCAACCTTATTCAG+TGG 0.482287 7_1:-26007541 Msa1015000:CDS
ATCCATGGCTCGTTATAGAT+AGG 0.482307 7_1:+26007608 None:intergenic
ACAGGGATGGCAGCTACAAA+TGG 0.485739 7_1:-26007801 Msa1015000:CDS
GGGTTATTTGCCAAATAAGA+AGG 0.490320 7_1:-26005250 Msa1015000:CDS
CTGTCAAGGTTAGAAGAAGA+AGG 0.491761 7_1:-26005203 Msa1015000:CDS
GCCAAATAAGAAGGATGGTA+AGG 0.493986 7_1:-26005241 Msa1015000:CDS
AATGATCATTTGCGGAAACC+GGG 0.494895 7_1:-26007318 Msa1015000:CDS
ATGGCAGCTACAAATGGATT+CGG 0.495188 7_1:-26007795 Msa1015000:CDS
GCTCTTCAACCTTATTCAGT+GGG 0.495919 7_1:-26007540 Msa1015000:intron
AGGTAATAGATTGTCGATGA+TGG 0.498326 7_1:+26004651 None:intergenic
ACCTCCCAAAGTTAAGAACT+TGG 0.499149 7_1:-26007265 Msa1015000:CDS
AAACGGTCTCTTGAAGTAAG+TGG 0.504040 7_1:+26005084 None:intergenic
GCGTATGAGGTAGGTGAAGA+AGG 0.506620 7_1:-26004809 Msa1015000:CDS
TGGAAGCTGCTCTGTTATGT+AGG 0.508047 7_1:-26006619 Msa1015000:CDS
TTGAAGTAAGTGGATGTGTA+TGG 0.512376 7_1:+26005094 None:intergenic
TCAAGATCCTTCCATGAAAG+TGG 0.516022 7_1:-26004522 Msa1015000:CDS
TCTATTGCCACTTTCATGGA+AGG 0.516827 7_1:+26004515 None:intergenic
TGATCTAGAACTTATCCTGC+TGG 0.532365 7_1:-26007576 Msa1015000:CDS
GATGAATTAAAGCCTACGAT+TGG 0.535839 7_1:-26005414 Msa1015000:CDS
AGAAAAGTGATTCATTCGTA+TGG 0.536168 7_1:-26004604 Msa1015000:CDS
TTCCTATCTATAACGAGCCA+TGG 0.536223 7_1:-26007610 Msa1015000:CDS
TGTGGAGCATCAGGAAAGCT+AGG 0.536948 7_1:-26006970 Msa1015000:CDS
GCCAACATATCAGGGCCAGC+AGG 0.538131 7_1:+26007561 None:intergenic
GTTAGAAAAGAATAAATGGT+TGG 0.538518 7_1:-26004306 Msa1015000:CDS
ACCAAGTTCTTAACTTTGGG+AGG 0.539607 7_1:+26007264 None:intergenic
GGAAAAGTTGCCTACCGCCC+AGG 0.544980 7_1:-26007013 Msa1015000:intron
TTCCTTGTAGACCTTCAAAA+CGG 0.545225 7_1:+26005067 None:intergenic
TATATCTCTAGTAACTGAGT+TGG 0.548356 7_1:+26006823 None:intergenic
AGAAGGGCTTTAACAAGAGA+AGG 0.550276 7_1:-26005186 Msa1015000:CDS
TAATATCTTTAATACAAATG+TGG 0.552746 7_1:+26007346 None:intergenic
TTTCATGGAAGGATCTTGAT+CGG 0.556444 7_1:+26004526 None:intergenic
CTAGAGATATAGACATCAGA+TGG 0.561090 7_1:-26006811 Msa1015000:CDS
GAACTTTGGACCCTTTACAT+TGG 0.562627 7_1:-26006594 Msa1015000:CDS
AAGTGTCTTTGAAATATGCT+GGG 0.568081 7_1:+26004252 None:intergenic
TTGTTAGGCATAGTGCTCAC+TGG 0.572230 7_1:-26007655 Msa1015000:CDS
GTTGAAGAGCCAACATATCA+GGG 0.578669 7_1:+26007553 None:intergenic
TGATGGTTTATCCCGGTGAA+AGG 0.578866 7_1:+26004668 None:intergenic
TGTTATAAGTCCTACGCCAA+AGG 0.582545 7_1:+26004631 None:intergenic
AAATGAGTTTGAAGAGACTT+GGG 0.582686 7_1:-26004351 Msa1015000:CDS
AGATCATGCTCCAATATCCA+TGG 0.585352 7_1:+26007593 None:intergenic
CGGAAACCGGGGTATTGGAG+TGG 0.586376 7_1:-26007306 Msa1015000:CDS
CTACTCATAGATTGTGCATG+TGG 0.586429 7_1:-26004475 Msa1015000:CDS
TATTTGCCAAATAAGAAGGA+TGG 0.592394 7_1:-26005246 Msa1015000:CDS
TTGTCGATGATGGTTTATCC+CGG 0.594835 7_1:+26004661 None:intergenic
GCAAAGTGAATCTACTGTCA+AGG 0.595204 7_1:-26005217 Msa1015000:CDS
CAATCTATTACCTTTGGCGT+AGG 0.596059 7_1:-26004641 Msa1015000:CDS
TGTCAAGGTTAGAAGAAGAA+GGG 0.596214 7_1:-26005202 Msa1015000:CDS
TCAAATACTTGTCCAATCGT+AGG 0.603614 7_1:+26005402 None:intergenic
GTTGCAATGCTTGGAAAACA+GGG 0.611756 7_1:-26007818 Msa1015000:CDS
GTATTTGATACGTTAGCAGA+AGG 0.613843 7_1:-26005387 Msa1015000:CDS
GAGCTATCGTTACCATAATG+TGG 0.616173 7_1:-26006988 Msa1015000:CDS
TCATACGCATAATAAAAGGA+TGG 0.619753 7_1:+26004824 None:intergenic
GATAGCTCGACCTGGGCGGT+AGG 0.622495 7_1:+26007003 None:intergenic
ATGGTAACGATAGCTCGACC+TGG 0.623741 7_1:+26006995 None:intergenic
AAGCTAGGAACCTGAAGTTG+TGG 0.625442 7_1:-26006955 Msa1015000:CDS
TAGTAACTGAGTTGGATGTG+TGG 0.632299 7_1:+26006831 None:intergenic
CCAAAGTTAAGAACTTGGTG+TGG 0.634133 7_1:-26007260 Msa1015000:CDS
CAATGCTTGGAAAACAGGGA+TGG 0.636554 7_1:-26007814 Msa1015000:CDS
TGGTAACGATAGCTCGACCT+GGG 0.642314 7_1:+26006996 None:intergenic
ACTATGCCTAACAACCACCT+TGG 0.643920 7_1:+26007664 None:intergenic
TACAATACGAGAAAGACCTA+AGG 0.648751 7_1:-26006909 Msa1015000:CDS
TCACTGGAAAATTGGTTCCG+GGG 0.649508 7_1:-26007639 Msa1015000:CDS
AGTTTCAAGTCATGTGTTTG+GGG 0.653537 7_1:-26004386 Msa1015000:CDS
ACATCAGATGGAGGAAACTG+AGG 0.654431 7_1:-26006799 Msa1015000:CDS
TGTTTGTGATTCGAAGCATG+TGG 0.665671 7_1:-26004277 Msa1015000:CDS
ATGATCATTTGCGGAAACCG+GGG 0.673254 7_1:-26007317 Msa1015000:CDS
GAGATATAGACATCAGATGG+AGG 0.678864 7_1:-26006808 Msa1015000:CDS
CATATGCCACTCCAATACCC+CGG 0.683704 7_1:+26007300 None:intergenic
GCATAGCATATTCAGCACCA+AGG 0.687150 7_1:-26007681 Msa1015000:CDS
AGATGGAGGAAACTGAGGAG+CGG 0.691139 7_1:-26006794 Msa1015000:CDS
AGGTGTTTCCATGAATGATG+AGG 0.705279 7_1:-26004423 Msa1015000:CDS
ATAGATAGGAATATTAACCC+CGG 0.711821 7_1:+26007622 None:intergenic
TAGCATATTCAGCACCAAGG+TGG 0.719057 7_1:-26007678 Msa1015000:CDS
TAACGATAGCTCGACCTGGG+CGG 0.744540 7_1:+26006999 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTGAAACTAAATAA+AGG + chr7_1:26005665-26005684 None:intergenic 10.0%
!! CATACATATATATATATATA+TGG - chr7_1:26005726-26005745 Msa1015000:intron 10.0%
!! TAATATCTTTAATACAAATG+TGG + chr7_1:26004602-26004621 None:intergenic 15.0%
!! AACAAATTAAATATGATATC+TGG + chr7_1:26004912-26004931 None:intergenic 15.0%
!!! AGATATCATATTTAATTTGT+TGG - chr7_1:26004911-26004930 Msa1015000:intron 15.0%
!!! TTTTCTCATTATTCTTTTTA+AGG - chr7_1:26005690-26005709 Msa1015000:intron 15.0%
!!! TTTCTCATTATTCTTTTTAA+GGG - chr7_1:26005691-26005710 Msa1015000:intron 15.0%
!! GGAAAACATAATAAATAAAA+AGG + chr7_1:26006442-26006461 None:intergenic 15.0%
!! TCTTCAATAAAATAATAGAA+AGG + chr7_1:26006463-26006482 None:intergenic 15.0%
!!! AAAAAAGTTTTTGAAAAAGT+AGG - chr7_1:26007502-26007521 Msa1015000:intron 15.0%
!! TTGATCAAAATGTTAAAGTT+TGG - chr7_1:26004436-26004455 Msa1015000:CDS 20.0%
!!! TGGAGTATTCAATATATTTT+GGG + chr7_1:26004502-26004521 None:intergenic 20.0%
!!! ATGGAGTATTCAATATATTT+TGG + chr7_1:26004503-26004522 None:intergenic 20.0%
!! TTATAAACAATGATCATTTG+CGG - chr7_1:26004619-26004638 Msa1015000:CDS 20.0%
!! TATTGGAAGATGATTTATAA+GGG - chr7_1:26005630-26005649 Msa1015000:intron 20.0%
!! AACTAATTATAATATACCTG+AGG + chr7_1:26006064-26006083 None:intergenic 20.0%
!! CAGGTATATTATAATTAGTT+TGG - chr7_1:26006064-26006083 Msa1015000:intron 20.0%
!!! TTTTGTTCCTATTTTTTTGT+TGG - chr7_1:26006151-26006170 Msa1015000:intron 20.0%
!!! TCCTATTTTTTTTCTTAGTT+TGG - chr7_1:26006275-26006294 Msa1015000:intron 20.0%
!! ACCAAACTAAGAAAAAAAAT+AGG + chr7_1:26006279-26006298 None:intergenic 20.0%
!! TTTAATTCATCATCACAATT+TGG + chr7_1:26006522-26006541 None:intergenic 20.0%
!!! TTTTGATAGATTACTTTAGA+AGG - chr7_1:26007083-26007102 Msa1015000:intron 20.0%
!! AGGAAAAATTATTCCTTATT+TGG - chr7_1:26007196-26007215 Msa1015000:intron 20.0%
!!! GGAAAAATTATTCCTTATTT+GGG - chr7_1:26007197-26007216 Msa1015000:intron 20.0%
!!! GAAAAATTATTCCTTATTTG+GGG - chr7_1:26007198-26007217 Msa1015000:intron 20.0%
!! TTGAGTTAGAAAAGAATAAA+TGG - chr7_1:26007635-26007654 Msa1015000:CDS 20.0%
!!! ATATTTCAAAGACACTTTTA+TGG - chr7_1:26007699-26007718 Msa1015000:CDS 20.0%
!! TAGTTATCTGGAATCTAAAT+TGG - chr7_1:26004219-26004238 Msa1015000:CDS 25.0%
!! AGTTATCTGGAATCTAAATT+GGG - chr7_1:26004220-26004239 Msa1015000:CDS 25.0%
! TCCAAATGGATAAATTGATT+TGG - chr7_1:26004535-26004554 Msa1015000:CDS 25.0%
! TCCAAATCAATTTATCCATT+TGG + chr7_1:26004539-26004558 None:intergenic 25.0%
!!! AATGGATAAATTGATTTGGA+AGG - chr7_1:26004539-26004558 Msa1015000:CDS 25.0%
! TATATGATAGCTATCTTCAT+GGG + chr7_1:26004799-26004818 None:intergenic 25.0%
!!! TTTTTCAAATGCCAGAAATA+AGG - chr7_1:26005201-26005220 Msa1015000:CDS 25.0%
! TCATATCATCTTTGTTAGTA+TGG - chr7_1:26005417-26005436 Msa1015000:CDS 25.0%
! CTATTGGAAGATGATTTATA+AGG - chr7_1:26005629-26005648 Msa1015000:intron 25.0%
! TCATGCAAAATATAAGAGAA+AGG + chr7_1:26005893-26005912 None:intergenic 25.0%
!!! ATTATAATTAGTTTGGCTTG+AGG - chr7_1:26006071-26006090 Msa1015000:intron 25.0%
! ACAAAAAAAACCTATCTCTT+AGG + chr7_1:26006137-26006156 None:intergenic 25.0%
!! TCATCGACTATAGATAAAAA+CGG - chr7_1:26006636-26006655 Msa1015000:intron 25.0%
!!! TATTTTGTTTGCTTGAAAGA+GGG - chr7_1:26006675-26006694 Msa1015000:intron 25.0%
!!! ATGCAAATGTTGTTTTCAAA+TGG - chr7_1:26006787-26006806 Msa1015000:CDS 25.0%
!!! TGCAAATGTTGTTTTCAAAT+GGG - chr7_1:26006788-26006807 Msa1015000:CDS 25.0%
! ACTTATTAAAAGAACAGTGT+GGG - chr7_1:26006972-26006991 Msa1015000:CDS 25.0%
!! ATGGTTGTTTGAAAAGTTTT+TGG - chr7_1:26007360-26007379 Msa1015000:CDS 25.0%
! GTTAGAAAAGAATAAATGGT+TGG - chr7_1:26007639-26007658 Msa1015000:CDS 25.0%
! AATTCAACCAAGTTAACATT+AGG + chr7_1:26007790-26007809 None:intergenic 25.0%
!!! ATGTTAACTTGGTTGAATTT+TGG - chr7_1:26007791-26007810 Msa1015000:CDS 25.0%
ATTCCAGATAACTACTATTC+GGG + chr7_1:26004213-26004232 None:intergenic 30.0%
GATTCCAGATAACTACTATT+CGG + chr7_1:26004214-26004233 None:intergenic 30.0%
!! GTTATAATCCAAGCTTTGTT+TGG - chr7_1:26004242-26004261 Msa1015000:CDS 30.0%
ATAGATAGGAATATTAACCC+CGG + chr7_1:26004326-26004345 None:intergenic 30.0%
ATTAAATGACCCACTGAATA+AGG + chr7_1:26004417-26004436 None:intergenic 30.0%
! TAAAGTTTGGAATGAACAGT+TGG - chr7_1:26004449-26004468 Msa1015000:CDS 30.0%
ATTTATCCATTTGGACTTGT+TGG + chr7_1:26004530-26004549 None:intergenic 30.0%
ATATGATAGCTATCTTCATG+GGG + chr7_1:26004798-26004817 None:intergenic 30.0%
GTATATGATAGCTATCTTCA+TGG + chr7_1:26004800-26004819 None:intergenic 30.0%
! TCATATACTTTTCCACTACA+AGG - chr7_1:26004812-26004831 Msa1015000:CDS 30.0%
! TTATCAAACTGATTCAGAGA+TGG + chr7_1:26004885-26004904 None:intergenic 30.0%
TATATCTCTAGTAACTGAGT+TGG + chr7_1:26005125-26005144 None:intergenic 30.0%
!! ATTTCTGGCATTTGAAAAAG+AGG + chr7_1:26005200-26005219 None:intergenic 30.0%
AAAGTCACAAATGAACACAA+TGG + chr7_1:26005295-26005314 None:intergenic 30.0%
! TGTGACTTTTATGATAGACT+TGG - chr7_1:26005306-26005325 Msa1015000:CDS 30.0%
CGTATCTATTCCAATGTAAA+GGG + chr7_1:26005364-26005383 None:intergenic 30.0%
TCGTATCTATTCCAATGTAA+AGG + chr7_1:26005365-26005384 None:intergenic 30.0%
CTTTGTTAGTATGGTTACAT+CGG - chr7_1:26005426-26005445 Msa1015000:CDS 30.0%
TTTGTTAGTATGGTTACATC+GGG - chr7_1:26005427-26005446 Msa1015000:CDS 30.0%
CAATAGAAGTTTCAGAACAA+GGG + chr7_1:26005615-26005634 None:intergenic 30.0%
! AGAGGGATTTTTAAATGAGA+GGG - chr7_1:26005762-26005781 Msa1015000:intron 30.0%
TTCAAACTGATGTATTTGGT+TGG + chr7_1:26005968-26005987 None:intergenic 30.0%
CCAATTCAAACTGATGTATT+TGG + chr7_1:26005972-26005991 None:intergenic 30.0%
CCAAATACATCAGTTTGAAT+TGG - chr7_1:26005969-26005988 Msa1015000:intron 30.0%
!! AACTTGTTTTCAAATTCCTC+AGG - chr7_1:26006045-26006064 Msa1015000:intron 30.0%
!!! TTGCTTTTTTCCTAAGAGAT+AGG - chr7_1:26006124-26006143 Msa1015000:intron 30.0%
AGTGGAACCAACAAAAAAAT+AGG + chr7_1:26006161-26006180 None:intergenic 30.0%
!! GTATTTTGTTTGCTTGAAAG+AGG - chr7_1:26006674-26006693 Msa1015000:intron 30.0%
TATTTGCCAAATAAGAAGGA+TGG - chr7_1:26006699-26006718 Msa1015000:intron 30.0%
!!! AAATGTTGTTTTCAAATGGG+TGG - chr7_1:26006791-26006810 Msa1015000:CDS 30.0%
!!! AATGTTGTTTTCAAATGGGT+GGG - chr7_1:26006792-26006811 Msa1015000:CDS 30.0%
GCATGTAGTAGAGAAAATAT+AGG - chr7_1:26006932-26006951 Msa1015000:CDS 30.0%
! CACACTGTTCTTTTAATAAG+TGG + chr7_1:26006973-26006992 None:intergenic 30.0%
CACTTATTAAAAGAACAGTG+TGG - chr7_1:26006971-26006990 Msa1015000:CDS 30.0%
CTTATTAAAAGAACAGTGTG+GGG - chr7_1:26006973-26006992 Msa1015000:CDS 30.0%
TTATTAAAAGAACAGTGTGG+GGG - chr7_1:26006974-26006993 Msa1015000:CDS 30.0%
AGATCCTCAAAATTATTCCA+GGG - chr7_1:26007024-26007043 Msa1015000:intron 30.0%
! AAATCCCTGGAATAATTTTG+AGG + chr7_1:26007031-26007050 None:intergenic 30.0%
ATTCAAAGTCTTTAAATCCC+TGG + chr7_1:26007044-26007063 None:intergenic 30.0%
TCATACGCATAATAAAAGGA+TGG + chr7_1:26007124-26007143 None:intergenic 30.0%
! ATCCTTTTATTATGCGTATG+AGG - chr7_1:26007123-26007142 Msa1015000:intron 30.0%
TACCTCATACGCATAATAAA+AGG + chr7_1:26007128-26007147 None:intergenic 30.0%
! TTTTATTATGCGTATGAGGT+AGG - chr7_1:26007127-26007146 Msa1015000:intron 30.0%
AGAAAAGTGATTCATTCGTA+TGG - chr7_1:26007341-26007360 Msa1015000:CDS 30.0%
!! GAAAAGTTTTTGGAAGCAAT+TGG - chr7_1:26007370-26007389 Msa1015000:CDS 30.0%
TGATCGGTTATTATAAGAGT+TGG + chr7_1:26007406-26007425 None:intergenic 30.0%
!!! ATTTTCTATTGCCACTTTCA+TGG + chr7_1:26007437-26007456 None:intergenic 30.0%
! AAAGTTTCAAGTCATGTGTT+TGG - chr7_1:26007557-26007576 Msa1015000:CDS 30.0%
! AAGTTTCAAGTCATGTGTTT+GGG - chr7_1:26007558-26007577 Msa1015000:CDS 30.0%
AAATGAGTTTGAAGAGACTT+GGG - chr7_1:26007594-26007613 Msa1015000:CDS 30.0%
!! AAGTGTCTTTGAAATATGCT+GGG + chr7_1:26007696-26007715 None:intergenic 30.0%
!! AAAGTGTCTTTGAAATATGC+TGG + chr7_1:26007697-26007716 None:intergenic 30.0%
GAAAGTGAGAATTCTTTCTA+TGG - chr7_1:26007751-26007770 Msa1015000:CDS 30.0%
TCTGAATCCTAATGTTAACT+TGG - chr7_1:26007780-26007799 Msa1015000:CDS 30.0%
! GCTTTTAATGTTGCAATGCT+TGG - chr7_1:26004118-26004137 Msa1015000:CDS 35.0%
TTACCCGAATAGTAGTTATC+TGG - chr7_1:26004207-26004226 Msa1015000:CDS 35.0%
!! ATTTGGACTTGTTGGTGTAA+TGG + chr7_1:26004522-26004541 None:intergenic 35.0%
ATTACACCAACAAGTCCAAA+TGG - chr7_1:26004521-26004540 Msa1015000:CDS 35.0%
!! GGATAAATTGATTTGGAAGG+CGG - chr7_1:26004542-26004561 Msa1015000:CDS 35.0%
CACACCAAGTTCTTAACTTT+GGG + chr7_1:26004687-26004706 None:intergenic 35.0%
TATGATAGCTATCTTCATGG+GGG + chr7_1:26004797-26004816 None:intergenic 35.0%
! TATACTTTTCCACTACAAGG+CGG - chr7_1:26004815-26004834 Msa1015000:CDS 35.0%
!! TTTGGATTTTGGCCAATGTT+TGG - chr7_1:26004847-26004866 Msa1015000:CDS 35.0%
AGAAATCAGATGCCAAACAT+TGG + chr7_1:26004862-26004881 None:intergenic 35.0%
TACAATACGAGAAAGACCTA+AGG - chr7_1:26005036-26005055 Msa1015000:intron 35.0%
! AAACCTTCTAAAAGGTCCTT+AGG + chr7_1:26005055-26005074 None:intergenic 35.0%
CATTCCTCAAACCTTCTAAA+AGG + chr7_1:26005063-26005082 None:intergenic 35.0%
CTAGAGATATAGACATCAGA+TGG - chr7_1:26005134-26005153 Msa1015000:CDS 35.0%
TCAAATGCCAGAAATAAGGT+AGG - chr7_1:26005205-26005224 Msa1015000:CDS 35.0%
! ATGTGCATTTGAGATTAAGC+AGG - chr7_1:26005235-26005254 Msa1015000:CDS 35.0%
ATGTCTGTTCAAAAACCATG+TGG - chr7_1:26005263-26005282 Msa1015000:CDS 35.0%
CCAATAGAAGTTTCAGAACA+AGG + chr7_1:26005616-26005635 None:intergenic 35.0%
!! CCTTGTTCTGAAACTTCTAT+TGG - chr7_1:26005613-26005632 Msa1015000:intron 35.0%
TATGGGATGTTTCAAATGAG+AGG - chr7_1:26005744-26005763 Msa1015000:intron 35.0%
ATGGGATGTTTCAAATGAGA+GGG - chr7_1:26005745-26005764 Msa1015000:intron 35.0%
! GAGAGGGATTTTTAAATGAG+AGG - chr7_1:26005761-26005780 Msa1015000:intron 35.0%
! TTTTTAAATGAGAGGGTGAG+AGG - chr7_1:26005769-26005788 Msa1015000:intron 35.0%
AAACTGATGTATTTGGTTGG+AGG + chr7_1:26005965-26005984 None:intergenic 35.0%
AGTTGATCTATCTTTGTCCA+TGG + chr7_1:26006029-26006048 None:intergenic 35.0%
AACCACCTAACATTAATGCA+GGG + chr7_1:26006336-26006355 None:intergenic 35.0%
AAACCACCTAACATTAATGC+AGG + chr7_1:26006337-26006356 None:intergenic 35.0%
GATGAATTAAAGCCTACGAT+TGG - chr7_1:26006531-26006550 Msa1015000:intron 35.0%
TCAAATACTTGTCCAATCGT+AGG + chr7_1:26006546-26006565 None:intergenic 35.0%
GTATTTGATACGTTAGCAGA+AGG - chr7_1:26006558-26006577 Msa1015000:intron 35.0%
GGGTTATTTGCCAAATAAGA+AGG - chr7_1:26006695-26006714 Msa1015000:intron 35.0%
TCCTTACCATCCTTCTTATT+TGG + chr7_1:26006708-26006727 None:intergenic 35.0%
TGTCAAGGTTAGAAGAAGAA+GGG - chr7_1:26006743-26006762 Msa1015000:intron 35.0%
!!! ATGTTGTTTTCAAATGGGTG+GGG - chr7_1:26006793-26006812 Msa1015000:CDS 35.0%
TTGAAGTAAGTGGATGTGTA+TGG + chr7_1:26006854-26006873 None:intergenic 35.0%
TTCCTTGTAGACCTTCAAAA+CGG + chr7_1:26006881-26006900 None:intergenic 35.0%
TGTGGGGGTTATGAAAATAT+TGG - chr7_1:26006989-26007008 Msa1015000:CDS 35.0%
GAGATCCTCAAAATTATTCC+AGG - chr7_1:26007023-26007042 Msa1015000:intron 35.0%
!!! AAGCATGTTTTTTGGGCATA+TGG - chr7_1:26007166-26007185 Msa1015000:intron 35.0%
TTTGGGCATATGGTATTTGT+AGG - chr7_1:26007176-26007195 Msa1015000:intron 35.0%
! TTATTCCTTATTTGGGGATG+TGG - chr7_1:26007204-26007223 Msa1015000:intron 35.0%
! TTAACTTTTGCACCTTTCAC+CGG - chr7_1:26007265-26007284 Msa1015000:CDS 35.0%
AGGTAATAGATTGTCGATGA+TGG + chr7_1:26007297-26007316 None:intergenic 35.0%
CATCGACAATCTATTACCTT+TGG - chr7_1:26007298-26007317 Msa1015000:CDS 35.0%
!! AAGTTTTTGGAAGCAATTGG+CGG - chr7_1:26007373-26007392 Msa1015000:CDS 35.0%
TTTCATGGAAGGATCTTGAT+CGG + chr7_1:26007422-26007441 None:intergenic 35.0%
GAATTCATCCTCATCATTCA+TGG + chr7_1:26007533-26007552 None:intergenic 35.0%
! AGTTTCAAGTCATGTGTTTG+GGG - chr7_1:26007559-26007578 Msa1015000:CDS 35.0%
CAAGTCTCTTCAAACTCATT+TGG + chr7_1:26007595-26007614 None:intergenic 35.0%
CAAATGAGTTTGAAGAGACT+TGG - chr7_1:26007593-26007612 Msa1015000:CDS 35.0%
! TTCAAAGACACTTTTATGGC+AGG - chr7_1:26007703-26007722 Msa1015000:CDS 35.0%
! TCAAAGACACTTTTATGGCA+GGG - chr7_1:26007704-26007723 Msa1015000:CDS 35.0%
! AATAGAAGTGCAACGACATA+AGG - chr7_1:26007831-26007850 Msa1015000:CDS 35.0%
TGTTGCAATGCTTGGAAAAC+AGG - chr7_1:26004126-26004145 Msa1015000:CDS 40.0%
GTTGCAATGCTTGGAAAACA+GGG - chr7_1:26004127-26004146 Msa1015000:CDS 40.0%
! ATGGCAGCTACAAATGGATT+CGG - chr7_1:26004150-26004169 Msa1015000:CDS 40.0%
ATGCTATGCCAAACAAAGCT+TGG + chr7_1:26004253-26004272 None:intergenic 40.0%
CATAGTGCTCACTGGAAAAT+TGG - chr7_1:26004298-26004317 Msa1015000:CDS 40.0%
TTCCTATCTATAACGAGCCA+TGG - chr7_1:26004335-26004354 Msa1015000:CDS 40.0%
ATCCATGGCTCGTTATAGAT+AGG + chr7_1:26004340-26004359 None:intergenic 40.0%
CTATAACGAGCCATGGATAT+TGG - chr7_1:26004342-26004361 Msa1015000:CDS 40.0%
AGATCATGCTCCAATATCCA+TGG + chr7_1:26004355-26004374 None:intergenic 40.0%
! TGATCTAGAACTTATCCTGC+TGG - chr7_1:26004369-26004388 Msa1015000:CDS 40.0%
GTTGAAGAGCCAACATATCA+GGG + chr7_1:26004395-26004414 None:intergenic 40.0%
GCTCTTCAACCTTATTCAGT+GGG - chr7_1:26004405-26004424 Msa1015000:CDS 40.0%
!! CAGTTGGTTCGTCAGTTATT+TGG - chr7_1:26004465-26004484 Msa1015000:CDS 40.0%
CAATGATCATTTGCGGAAAC+CGG - chr7_1:26004626-26004645 Msa1015000:CDS 40.0%
AATGATCATTTGCGGAAACC+GGG - chr7_1:26004627-26004646 Msa1015000:CDS 40.0%
ACCTCCCAAAGTTAAGAACT+TGG - chr7_1:26004680-26004699 Msa1015000:CDS 40.0%
ACCAAGTTCTTAACTTTGGG+AGG + chr7_1:26004684-26004703 None:intergenic 40.0%
CCACACCAAGTTCTTAACTT+TGG + chr7_1:26004688-26004707 None:intergenic 40.0%
! CCAAAGTTAAGAACTTGGTG+TGG - chr7_1:26004685-26004704 Msa1015000:CDS 40.0%
ATTTCCCATCAACTTGTGTC+AGG - chr7_1:26004763-26004782 Msa1015000:CDS 40.0%
GAGCTATCGTTACCATAATG+TGG - chr7_1:26004957-26004976 Msa1015000:intron 40.0%
! TTACCATAATGTGGAGCATC+AGG - chr7_1:26004966-26004985 Msa1015000:intron 40.0%
TTTCCTGATGCTCCACATTA+TGG + chr7_1:26004972-26004991 None:intergenic 40.0%
! AGACCTAAGGACCTTTTAGA+AGG - chr7_1:26005049-26005068 Msa1015000:intron 40.0%
!! AGGACCTTTTAGAAGGTTTG+AGG - chr7_1:26005056-26005075 Msa1015000:intron 40.0%
! TAGTAACTGAGTTGGATGTG+TGG + chr7_1:26005117-26005136 None:intergenic 40.0%
GAGATATAGACATCAGATGG+AGG - chr7_1:26005137-26005156 Msa1015000:CDS 40.0%
CTGTTATGTAGGCAGAACTT+TGG - chr7_1:26005337-26005356 Msa1015000:CDS 40.0%
GAACTTTGGACCCTTTACAT+TGG - chr7_1:26005351-26005370 Msa1015000:CDS 40.0%
TCTCATAGGAGAAACACATC+AGG + chr7_1:26005460-26005479 None:intergenic 40.0%
TGATGTGTTTCTCCTATGAG+AGG - chr7_1:26005459-26005478 Msa1015000:intron 40.0%
TCTCTCTCCATCGTTCTATA+TGG - chr7_1:26005485-26005504 Msa1015000:intron 40.0%
TCGTTCTCCATATAGAACGA+TGG + chr7_1:26005495-26005514 None:intergenic 40.0%
CACTAACAAGTCTACACACT+AGG + chr7_1:26005539-26005558 None:intergenic 40.0%
AGGGTGAGAGGATTAAATAG+TGG - chr7_1:26005781-26005800 Msa1015000:intron 40.0%
GAGGATTAAATAGTGGCCAT+TGG - chr7_1:26005788-26005807 Msa1015000:intron 40.0%
! TGGCCATTGGATTAGATAGA+TGG - chr7_1:26005801-26005820 Msa1015000:intron 40.0%
CAGCCATCTATCTAATCCAA+TGG + chr7_1:26005807-26005826 None:intergenic 40.0%
AGGAACACACGTTCAGAAAT+TGG + chr7_1:26005873-26005892 None:intergenic 40.0%
GGTCAGTAATGAGAAGAACA+TGG + chr7_1:26005920-26005939 None:intergenic 40.0%
TGAGTTACGTTCATTCTCCA+TGG - chr7_1:26006009-26006028 Msa1015000:intron 40.0%
CAACAACCAAATAGAACCAC+GGG + chr7_1:26006189-26006208 None:intergenic 40.0%
CCAACAACCAAATAGAACCA+CGG + chr7_1:26006190-26006209 None:intergenic 40.0%
AGAAGCCCTGCATTAATGTT+AGG - chr7_1:26006328-26006347 Msa1015000:intron 40.0%
GAAAAATACGCACTCTCTGT+CGG - chr7_1:26006594-26006613 Msa1015000:CDS 40.0%
GCCAAATAAGAAGGATGGTA+AGG - chr7_1:26006704-26006723 Msa1015000:intron 40.0%
GCAAAGTGAATCTACTGTCA+AGG - chr7_1:26006728-26006747 Msa1015000:intron 40.0%
CTGTCAAGGTTAGAAGAAGA+AGG - chr7_1:26006742-26006761 Msa1015000:intron 40.0%
! AGAAGGGCTTTAACAAGAGA+AGG - chr7_1:26006759-26006778 Msa1015000:CDS 40.0%
!!! TGTTGTTTTCAAATGGGTGG+GGG - chr7_1:26006794-26006813 Msa1015000:CDS 40.0%
AAACGGTCTCTTGAAGTAAG+TGG + chr7_1:26006864-26006883 None:intergenic 40.0%
! ACTTCAAGAGACCGTTTTGA+AGG - chr7_1:26006867-26006886 Msa1015000:CDS 40.0%
CCCAAAAAACATGCTTCAGT+CGG + chr7_1:26007162-26007181 None:intergenic 40.0%
!!! CCGACTGAAGCATGTTTTTT+GGG - chr7_1:26007159-26007178 Msa1015000:intron 40.0%
TGAAACCACATCCCCAAATA+AGG + chr7_1:26007212-26007231 None:intergenic 40.0%
! TAACTTTTGCACCTTTCACC+GGG - chr7_1:26007266-26007285 Msa1015000:CDS 40.0%
! TTGTCGATGATGGTTTATCC+CGG + chr7_1:26007287-26007306 None:intergenic 40.0%
CAATCTATTACCTTTGGCGT+AGG - chr7_1:26007304-26007323 Msa1015000:CDS 40.0%
TGTTATAAGTCCTACGCCAA+AGG + chr7_1:26007317-26007336 None:intergenic 40.0%
TCAAGATCCTTCCATGAAAG+TGG - chr7_1:26007423-26007442 Msa1015000:intron 40.0%
!! TCTATTGCCACTTTCATGGA+AGG + chr7_1:26007433-26007452 None:intergenic 40.0%
CTACTCATAGATTGTGCATG+TGG - chr7_1:26007470-26007489 Msa1015000:intron 40.0%
AGGTGTTTCCATGAATGATG+AGG - chr7_1:26007522-26007541 Msa1015000:intron 40.0%
! CTTGGGCGTTTTTGATGAAA+AGG - chr7_1:26007611-26007630 Msa1015000:CDS 40.0%
TGTTTGTGATTCGAAGCATG+TGG - chr7_1:26007668-26007687 Msa1015000:CDS 40.0%
CAATGCTTGGAAAACAGGGA+TGG - chr7_1:26004131-26004150 Msa1015000:CDS 45.0%
GCATAGCATATTCAGCACCA+AGG - chr7_1:26004264-26004283 Msa1015000:CDS 45.0%
TAGCATATTCAGCACCAAGG+TGG - chr7_1:26004267-26004286 Msa1015000:CDS 45.0%
ACTATGCCTAACAACCACCT+TGG + chr7_1:26004284-26004303 None:intergenic 45.0%
TTGTTAGGCATAGTGCTCAC+TGG - chr7_1:26004290-26004309 Msa1015000:CDS 45.0%
! GCTCACTGGAAAATTGGTTC+CGG - chr7_1:26004304-26004323 Msa1015000:CDS 45.0%
! CTCACTGGAAAATTGGTTCC+GGG - chr7_1:26004305-26004324 Msa1015000:CDS 45.0%
! TCACTGGAAAATTGGTTCCG+GGG - chr7_1:26004306-26004325 Msa1015000:CDS 45.0%
GGTTGAAGAGCCAACATATC+AGG + chr7_1:26004396-26004415 None:intergenic 45.0%
GGCTCTTCAACCTTATTCAG+TGG - chr7_1:26004404-26004423 Msa1015000:CDS 45.0%
ATTTGGAAGGCGGAGAAGAA+TGG - chr7_1:26004552-26004571 Msa1015000:CDS 45.0%
TTTGGAAGGCGGAGAAGAAT+GGG - chr7_1:26004553-26004572 Msa1015000:CDS 45.0%
GGAGAAGAATGGGTGTTTCT+CGG - chr7_1:26004563-26004582 Msa1015000:CDS 45.0%
ATGATCATTTGCGGAAACCG+GGG - chr7_1:26004628-26004647 Msa1015000:CDS 45.0%
CTTCACAACTTTACTCGCGT+TGG + chr7_1:26004732-26004751 None:intergenic 45.0%
CGAGTAAAGTTGTGAAGCAG+AGG - chr7_1:26004735-26004754 Msa1015000:CDS 45.0%
!! CACACCTGACACAAGTTGAT+GGG + chr7_1:26004770-26004789 None:intergenic 45.0%
! TCACACCTGACACAAGTTGA+TGG + chr7_1:26004771-26004790 None:intergenic 45.0%
! GGCCATCGATGTTTGGATTT+TGG - chr7_1:26004836-26004855 Msa1015000:CDS 45.0%
GGCCAAAATCCAAACATCGA+TGG + chr7_1:26004841-26004860 None:intergenic 45.0%
AAGCTAGGAACCTGAAGTTG+TGG - chr7_1:26004990-26005009 Msa1015000:intron 45.0%
! ACACTTGTTGCCACAACTTC+AGG + chr7_1:26005003-26005022 None:intergenic 45.0%
!! GATGTGTGGTTCTGACTTGT+AGG + chr7_1:26005103-26005122 None:intergenic 45.0%
ACATCAGATGGAGGAAACTG+AGG - chr7_1:26005146-26005165 Msa1015000:CDS 45.0%
TGCCAGAAATAAGGTAGGAG+TGG - chr7_1:26005210-26005229 Msa1015000:CDS 45.0%
GCCAGAAATAAGGTAGGAGT+GGG - chr7_1:26005211-26005230 Msa1015000:CDS 45.0%
ACACAATGGAGTGAACCACA+TGG + chr7_1:26005281-26005300 None:intergenic 45.0%
TGGAAGCTGCTCTGTTATGT+AGG - chr7_1:26005326-26005345 Msa1015000:CDS 45.0%
TAGGAGAAACACATCAGGAG+CGG + chr7_1:26005455-26005474 None:intergenic 45.0%
TGTGTTTCTCCTATGAGAGG+TGG - chr7_1:26005462-26005481 Msa1015000:intron 45.0%
! TTGGTGACAAGAGAGTCACA+TGG + chr7_1:26005854-26005873 None:intergenic 45.0%
! CCGTGGTTCTATTTGGTTGT+TGG - chr7_1:26006187-26006206 Msa1015000:intron 45.0%
AGCCCTGCATTAATGTTAGG+TGG - chr7_1:26006331-26006350 Msa1015000:intron 45.0%
ATAAAAACGGCGTGAAGCGT+TGG - chr7_1:26006649-26006668 Msa1015000:intron 45.0%
!!! GACCGTTTTGAAGGTCTACA+AGG - chr7_1:26006876-26006895 Msa1015000:CDS 45.0%
!!! GCCGACTGAAGCATGTTTTT+TGG - chr7_1:26007158-26007177 Msa1015000:intron 45.0%
TGATGGTTTATCCCGGTGAA+AGG + chr7_1:26007280-26007299 None:intergenic 45.0%
!! ATACATATATATATATATAT+GGG - chr7_1:26005727-26005746 Msa1015000:intron 5.0%
!!! ATATTTATTTTGTTAATTTT+AGG - chr7_1:26006482-26006501 Msa1015000:intron 5.0%
ACAGGGATGGCAGCTACAAA+TGG - chr7_1:26004144-26004163 Msa1015000:CDS 50.0%
TCAGCACCAAGGTGGTTGTT+AGG - chr7_1:26004275-26004294 Msa1015000:CDS 50.0%
ATTTGCGGAAACCGGGGTAT+TGG - chr7_1:26004634-26004653 Msa1015000:CDS 50.0%
CATATGCCACTCCAATACCC+CGG + chr7_1:26004648-26004667 None:intergenic 50.0%
! TGGTAACGATAGCTCGACCT+GGG + chr7_1:26004952-26004971 None:intergenic 50.0%
! ATGGTAACGATAGCTCGACC+TGG + chr7_1:26004953-26004972 None:intergenic 50.0%
! TGTGGAGCATCAGGAAAGCT+AGG - chr7_1:26004975-26004994 Msa1015000:intron 50.0%
AGATGGAGGAAACTGAGGAG+CGG - chr7_1:26005151-26005170 Msa1015000:CDS 50.0%
! GCCCACTCCTACCTTATTTC+TGG + chr7_1:26005215-26005234 None:intergenic 50.0%
GAAGTGAGAGGGAAGTGAGA+AGG + chr7_1:26005941-26005960 None:intergenic 50.0%
TGGTTGGAGGTGAAGTGAGA+GGG + chr7_1:26005952-26005971 None:intergenic 50.0%
TTGGTTGGAGGTGAAGTGAG+AGG + chr7_1:26005953-26005972 None:intergenic 50.0%
! TGCTGTCCCGTGGTTCTATT+TGG - chr7_1:26006180-26006199 Msa1015000:intron 50.0%
! GTTTTCAAATGGGTGGGGGA+AGG - chr7_1:26006798-26006817 Msa1015000:CDS 50.0%
GCGTATGAGGTAGGTGAAGA+AGG - chr7_1:26007136-26007155 Msa1015000:intron 50.0%
TCCTGCTGGCCCTGATATGT+TGG - chr7_1:26004383-26004402 Msa1015000:CDS 55.0%
!! CGGGGTATTGGAGTGGCATA+TGG - chr7_1:26004646-26004665 Msa1015000:CDS 55.0%
ACAAGGCGGCCATCGATGTT+TGG - chr7_1:26004829-26004848 Msa1015000:CDS 55.0%
TAACGATAGCTCGACCTGGG+CGG + chr7_1:26004949-26004968 None:intergenic 55.0%
GGAGAGAGACCACCTCTCAT+AGG + chr7_1:26005474-26005493 None:intergenic 55.0%
ATAGAACCACGGGACAGCAG+TGG + chr7_1:26006179-26006198 None:intergenic 55.0%
GCCAACATATCAGGGCCAGC+AGG + chr7_1:26004387-26004406 None:intergenic 60.0%
!! CGGAAACCGGGGTATTGGAG+TGG - chr7_1:26004639-26004658 Msa1015000:CDS 60.0%
CATCGATGGCCGCCTTGTAG+TGG + chr7_1:26004827-26004846 None:intergenic 60.0%
GGAAAAGTTGCCTACCGCCC+AGG - chr7_1:26004932-26004951 Msa1015000:intron 60.0%
TTGGTTCCACTGCTGTCCCG+TGG - chr7_1:26006170-26006189 Msa1015000:intron 60.0%
GATAGCTCGACCTGGGCGGT+AGG + chr7_1:26004945-26004964 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 26004097 26007870 26004097 ID=Msa1015000;Name=Msa1015000
chr7_1 mRNA 26004097 26007870 26004097 ID=Msa1015000-mRNA-1;Parent=Msa1015000;Name=Msa1015000-mRNA-1;_AED=0.53;_eAED=0.55;_QI=0|0|0|0.5|1|1|6|0|690
chr7_1 exon 26007541 26007870 26007541 ID=Msa1015000-mRNA-1:exon:5725;Parent=Msa1015000-mRNA-1
chr7_1 exon 26007244 26007406 26007244 ID=Msa1015000-mRNA-1:exon:5724;Parent=Msa1015000-mRNA-1
chr7_1 exon 26006745 26007028 26006745 ID=Msa1015000-mRNA-1:exon:5723;Parent=Msa1015000-mRNA-1
chr7_1 exon 26006573 26006644 26006573 ID=Msa1015000-mRNA-1:exon:5722;Parent=Msa1015000-mRNA-1
chr7_1 exon 26005066 26005463 26005066 ID=Msa1015000-mRNA-1:exon:5721;Parent=Msa1015000-mRNA-1
chr7_1 exon 26004097 26004922 26004097 ID=Msa1015000-mRNA-1:exon:5720;Parent=Msa1015000-mRNA-1
chr7_1 CDS 26007541 26007870 26007541 ID=Msa1015000-mRNA-1:cds;Parent=Msa1015000-mRNA-1
chr7_1 CDS 26007244 26007406 26007244 ID=Msa1015000-mRNA-1:cds;Parent=Msa1015000-mRNA-1
chr7_1 CDS 26006745 26007028 26006745 ID=Msa1015000-mRNA-1:cds;Parent=Msa1015000-mRNA-1
chr7_1 CDS 26006573 26006644 26006573 ID=Msa1015000-mRNA-1:cds;Parent=Msa1015000-mRNA-1
chr7_1 CDS 26005066 26005463 26005066 ID=Msa1015000-mRNA-1:cds;Parent=Msa1015000-mRNA-1
chr7_1 CDS 26004097 26004922 26004097 ID=Msa1015000-mRNA-1:cds;Parent=Msa1015000-mRNA-1
Gene Sequence

>Msa1015000

ATGGGTTTCAAAGATTTGGCTGCTTTTAATGTTGCAATGCTTGGAAAACAGGGATGGCAGCTACAAATGGATTCGGATAGTTTAGTCTCAAGAATCTTTAAAGCTCGATATTACCCGAATAGTAGTTATCTGGAATCTAAATTGGGTTATAATCCAAGCTTTGTTTGGCATAGCATATTCAGCACCAAGGTGGTTGTTAGGCATAGTGCTCACTGGAAAATTGGTTCCGGGGTTAATATTCCTATCTATAACGAGCCATGGATATTGGAGCATGATCTAGAACTTATCCTGCTGGCCCTGATATGTTGGCTCTTCAACCTTATTCAGTGGGCGGAGAAGAATGGGTGTTTCTCGGTTAGAAGTGCTTACCACATTTGTATTAAAGATATTATAAACAATGATCATTTGCGGAAACCGGGGTATTGGAGTGGCATATGGAGACTGAAAGTACCTCCCAAAGTTAAGAACTTGGTGTGGAGAATTTGTAGAGACTTTGCCTACCGCCCAGGTCGAGCTATCGTTACCATAATGTGGAGCATCAGGAAAGCTAGGAACCTGAAGTTGTGGCAACAAGTGTCAAACTCGAGCGTTACAATACGAGAAAGACCTAAGGACCTTTTAGAAGGTTTGAGGAATGCTAATCGCAAGCAAAGTCCTACAAGTCAGAACCACACATCCAACTCAGTTACTAGAGATATAGACATCAGATGGAGGAAACTGAGGAGCGGCATATTTAAATGTAATGTTGATGCCTCTTTTTCAAATGCCAGAAATAAGACTTGGAAGCTGCTCTGTTATGTAGGCAGAACTTTGGACCCTTTACATTGGAATAGATACGAAGATTGTCAAGAATATGAATGTGTGCCAAATTGTGATGATGAATTAAAGCCTACGATTGGACAAGTATTTGATACGTTAGCAGAAGGTAAAAAAATTTACGAAAAATACGCACTCTCTGTCGGATTTAGAGTGCGTTCATCATCATCGACTATAGATAAAAACGGCGTGAAGCGTTGGAAGTATTTTGTTTGCTTGAAAGAGGGTTATTTGCCAAATAAGAAGGATGGTAAGGAGCAAAGTGAATCTACTGTCAAGGTTAGAAGAAGAAGGGCTTTAACAAGAGAAGGATGCAATGCAAATGTTGTTTTCAAATGGGTGGGGGAAGGTAAGTATGAGATAGCTCGATTTCATGAAAACCATACACATCCACTTACTTCAAGAGACCGTTTTGAAGGTCTACAAGGAAAGGATTTAAAGACTTTGAATAAAGATTCTGATGCACATGTTTTGATAGATTACTTTAGAAGGAAGCAAGAAGTTAATCCATCCTTTTATTATGCGTATGAGGTAGGTGAAGAAGGCCGACTGAAGCATGTTTTTTGGGCATATGGTATTTGTAGGAAAAATTATTCCTTATTTGGGGATGTGGTTTCATTTGATACTACGTATCAAACAAATAAATATCATTTAACTTTTGCACCTTTCACCGGGATAAACCATCATCGACAATCTATTACCTTTGGCGTAGGACTTATAACAAATGAGAAAAGTGATTCATTCGTATGGTTGTTTGAAAAGTTTTTGGAAGCAATTGGCGGACATAAGCCAACTCTTATAATAACCGATCAAGATCCTTCCATGAAAGTGGCAATAGAAAATATGTTTGATGCTTCTACTCATAGATTGTGCATGTGGCATATCATGAAAAAAGTTTTTGAAAAAGTAGGTGTTTCCATGAATGATGAGGATGAATTCAACAAAAGTTTCAAGTCATGTGTTTGGGGTTCAGAGACACCAAATGAGTTTGAAGAGACTTGGGCGTTTTTGATGAAAAGGTTTGAGTTAGAAAAGAATAAATGGTTGGCACATATGTTTGTGATTCGAAGCATGTGGATCCCAGCATATTTCAAAGACACTTTTATGGCAGGGATATTGAGAACAACATCAAGATTAGAAAGTGAGAATTCTTTCTATGGTAATTTTCTGAATCCTAATGTTAACTTGGTTGAATTTTGGATGAGATTTGATTTAGCAATAGAAGTGCAACGACATAAGGAGTTACTAGTGTTATGA
Protein sequence

>Msa1015000

MGFKDLAAFNVAMLGKQGWQLQMDSDSLVSRIFKARYYPNSSYLESKLGYNPSFVWHSIFSTKVVVRHSAHWKIGSGVNIPIYNEPWILEHDLELILLALICWLFNLIQWAEKNGCFSVRSAYHICIKDIINNDHLRKPGYWSGIWRLKVPPKVKNLVWRICRDFAYRPGRAIVTIMWSIRKARNLKLWQQVSNSSVTIRERPKDLLEGLRNANRKQSPTSQNHTSNSVTRDIDIRWRKLRSGIFKCNVDASFSNARNKTWKLLCYVGRTLDPLHWNRYEDCQEYECVPNCDDELKPTIGQVFDTLAEGKKIYEKYALSVGFRVRSSSSTIDKNGVKRWKYFVCLKEGYLPNKKDGKEQSESTVKVRRRRALTREGCNANVVFKWVGEGKYEIARFHENHTHPLTSRDRFEGLQGKDLKTLNKDSDAHVLIDYFRRKQEVNPSFYYAYEVGEEGRLKHVFWAYGICRKNYSLFGDVVSFDTTYQTNKYHLTFAPFTGINHHRQSITFGVGLITNEKSDSFVWLFEKFLEAIGGHKPTLIITDQDPSMKVAIENMFDASTHRLCMWHIMKKVFEKVGVSMNDEDEFNKSFKSCVWGSETPNEFEETWAFLMKRFELEKNKWLAHMFVIRSMWIPAYFKDTFMAGILRTTSRLESENSFYGNFLNPNVNLVEFWMRFDLAIEVQRHKELLVL*