AlfalfaGEDB | Msa1015410

M. sativa cultivar zhongmu-4 / Msa1015410

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015410	XP_039685680.1	83.003	606	82	2	1	590	1	601	0.0	1026

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015410	sp\|Q9SZL8\|FRS5_ARATH	28.454	485	299	11	32	504	70	518	5.25e-55	202

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015410	D3YBB9	74.454	595	142	2	1	590	49	638	0.0	932

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TFs/TRs:

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Gene ID	Type	Classification
Msa1015410	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015410	MtrunA17_Chr2g0324011	30.572	507	318	8	36	537	8	485	6.12e-84	273
Msa1015410	MtrunA17_Chr3g0082121	33.470	487	286	9	41	525	49	499	2.07e-80	267
Msa1015410	MtrunA17_Chr1g0202341	31.659	458	272	11	34	484	50	473	2.12e-63	221
Msa1015410	MtrunA17_Chr8g0363841	29.600	500	317	11	40	535	22	490	2.01e-62	218
Msa1015410	MtrunA17_Chr1g0164591	34.154	325	194	5	131	453	1	307	6.04e-57	194
Msa1015410	MtrunA17_Chr2g0296781	29.638	469	292	11	39	504	1	434	2.46e-54	196
Msa1015410	MtrunA17_Chr1g0172971	81.197	117	21	1	1	116	1	117	4.95e-54	192
Msa1015410	MtrunA17_Chr5g0448761	27.606	518	324	13	27	529	52	533	5.48e-53	193
Msa1015410	MtrunA17_Chr1g0203721	26.953	512	325	12	40	539	68	542	1.23e-52	193
Msa1015410	MtrunA17_Chr7g0258861	34.091	308	178	6	36	340	8	293	8.10e-50	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015410	AT4G38180.1	28.454	485	299	11	32	504	70	518	5.34e-56	202
Msa1015410	AT1G76320.3	25.983	458	292	12	50	501	12	428	2.49e-36	144
Msa1015410	AT1G76320.2	25.983	458	292	12	50	501	12	428	5.23e-36	144
Msa1015410	AT1G76320.1	25.983	458	292	12	50	501	12	428	5.63e-36	144
Msa1015410	AT1G76320.4	25.983	458	292	12	50	501	12	428	5.63e-36	144
Msa1015410	AT4G15090.1	24.689	482	330	10	50	528	66	517	2.68e-35	142
Msa1015410	AT4G15090.5	24.689	482	330	10	50	528	66	517	2.68e-35	142
Msa1015410	AT4G15090.3	24.689	482	330	10	50	528	66	517	2.68e-35	142
Msa1015410	AT4G15090.2	24.689	482	330	10	50	528	66	517	2.68e-35	142
Msa1015410	AT4G15090.4	24.689	482	330	10	50	528	66	517	2.68e-35	142

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Find 125 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCTCTGGTTTATGTAA+TGG	0.552634	7_1:+27768833	None:intergenic
AAATTATGGTTCAGAGAATG+AGG	0.506271	7_1:-27767410	Msa1015410:CDS
AACAAAGAAGGTTTCAAGAA+GGG	0.545537	7_1:-27769031	Msa1015410:CDS
AACAATAAATATCGGCCATT+AGG	0.388497	7_1:-27768431	Msa1015410:intron
AACCGTCAATTGTCCACTCT+CGG	0.506734	7_1:+27769270	None:intergenic
AACTCGTCAAAAGGAGATGG+TGG	0.603142	7_1:-27768639	Msa1015410:CDS
AAGAAAGACCAAATCCAATT+AGG	0.397771	7_1:-27766571	Msa1015410:three_prime_UTR
AATCAGATTTCGACTACAAT+TGG	0.318540	7_1:-27767650	Msa1015410:CDS
AATCGAACAAGTGAATGGTC+TGG	0.540971	7_1:+27767447	None:intergenic
AATTATGGTTCAGAGAATGA+GGG	0.653552	7_1:-27767409	Msa1015410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCATGATTCTTTATCACTAA+AGG	+	chr7_1:27766447-27766466	None:intergenic	30.0%
CCTTTAGTGATAAAGAATCA+TGG	-	chr7_1:27766444-27766463	Msa1015410:three_prime_UTR	30.0%
TAAAGAATCATGGAAGTCTT+TGG	-	chr7_1:27766454-27766473	Msa1015410:three_prime_UTR	30.0%
TAACAAAGAAGGTTTCAAGA+AGG	-	chr7_1:27766619-27766638	Msa1015410:three_prime_UTR	30.0%
AACAAAGAAGGTTTCAAGAA+GGG	-	chr7_1:27766620-27766639	Msa1015410:three_prime_UTR	30.0%
TAAAGAAAAACCAGAGGAAA+GGG	-	chr7_1:27766709-27766728	Msa1015410:three_prime_UTR	30.0%
AGAACATCTTATGAAGTGAT+GGG	-	chr7_1:27766923-27766942	Msa1015410:three_prime_UTR	30.0%
TTTAAGTCCGAAAATCGAAA+AGG	+	chr7_1:27766977-27766996	None:intergenic	30.0%
CAACAAGATTATGCTCTATT+TGG	-	chr7_1:27767163-27767182	Msa1015410:CDS	30.0%
GCCGATATTTATTGTTTGTT+CGG	+	chr7_1:27767216-27767235	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	27766314	27769359	27766314	ID=Msa1015410;Name=Msa1015410
chr7_1	mRNA	27766314	27769359	27766314	ID=Msa1015410-mRNA-1;Parent=Msa1015410;Name=Msa1015410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45\|0\|0.66\|0.66\|1\|1\|3\|796\|590
chr7_1	exon	27766314	27767985	27766314	ID=Msa1015410-mRNA-1:exon:5914;Parent=Msa1015410-mRNA-1
chr7_1	exon	27768347	27768360	27768347	ID=Msa1015410-mRNA-1:exon:5913;Parent=Msa1015410-mRNA-1
chr7_1	exon	27768432	27769359	27768432	ID=Msa1015410-mRNA-1:exon:5912;Parent=Msa1015410-mRNA-1
chr7_1	five_prime_UTR	27769315	27769359	27769315	ID=Msa1015410-mRNA-1:five_prime_utr;Parent=Msa1015410-mRNA-1
chr7_1	CDS	27768432	27769314	27768432	ID=Msa1015410-mRNA-1:cds;Parent=Msa1015410-mRNA-1
chr7_1	CDS	27768347	27768360	27768347	ID=Msa1015410-mRNA-1:cds;Parent=Msa1015410-mRNA-1
chr7_1	CDS	27767110	27767985	27767110	ID=Msa1015410-mRNA-1:cds;Parent=Msa1015410-mRNA-1
chr7_1	three_prime_UTR	27766314	27767109	27766314	ID=Msa1015410-mRNA-1:three_prime_utr;Parent=Msa1015410-mRNA-1

Gene Sequence

>Msa1015410

ATGGATTTGATATCAACTTCATCCGAGAGTGGACAATTGACGGTTGAAAATTCAGTTATTGATGCGGATAGTTCTCAATTTTACTCCTTTAGTGATAAAGAATCATGGAAGTCTTTGGTCTTTAAATCTATAAAAGAGATTGAAGATTTTTATTTTAATTATGCATATAACACTGGATTCTCTGTTAGGAGTATGTTGAAGTCCAAGAACAATTCACAAAATAAGAAATCAGATAAGGTACATTATGTGCGTTATGCTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTCTGCTTAATCCTAAAAACAGGCCAACATGTGACAGTCCAGTTCTTGTTGAGTATGAGAAAGCTAAAGAAAAACCAGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGTTGGATGAAGCGTTGAATGTCTATAAGATATATAGGTGGGAAGTTGATCACTGTCATCCATTACATAAACCAGAGCATTTGCGCTACTTGAGATCATTTCGAGAAGTAAATCAAGTTCAAGGACAACTTGCTTTAATAAATTCTAAAGCTGGAATGTCGATGAGAACATCTTATGAAGTGATGGGTCAAGGAGTTGGAGGCACGGAGAATCTTCCTTTTCGATTTTCGGACTTAAAGAACTATCTAATGACAACTCGTCAAAAGGAGATGGTGGCTGGTGAAGCAACTGTTATTCAAGAATTCTTTAGAAATGAAGCTCTCTCGAAACCAAGTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCTAGTATTTTTTGGGCAGATGGAATTATGCAACAAGATTATGCTCTATTTGGTGATGTTGTCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGAATTGAAGGTTCTGCTGCCTTTCTTGGTTTTGACAATCATCGTAAAGAGTGTGTTATTTGGTGCTGCGCTACTTTATGATGAGACATCAACTACTTTTGATTGGTTGTTTACAACTTTTTTGAAGTGTATGTCCAATAATAAACCTCAAACCATATACACAGACCAGGTTGGTGCGTTGTTGAAGTCAATTCCGAATGTTTTTCAAGGTGTTTTTCATGGTCTTTGCTCATGGCATATGGGAGAGAATGCAAAGAAAAATCTCGGCTCTCGTGCAAACAGTGTATTTTTCGATGAGTTAACTAATTTGGTTTCAAATGTCGAAGATGAATCAGATTTCGACTACAATTGGGATCAGATGATGAAAAACTGTTTTAATGGAAGGCCTACTTCGGACTTTAAGTGGCTTGTTCAAACTCATTCAAATCGTATGCATTGGTCTTCAGTTTGGGTGAGGTCACATTTTACAGCTGGTTTGAAAACGACTCAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTTTGCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATTTCAAAATTATGGTTCAGAGAATGAGGGATAATCATGTTGATTTGGACTTCAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAACAGTCAGCTTATGCGGTCCGTAGTAAACAAGTATACACCATCTTGCTTTTCATTCATTCACAGTCAGTATGACCTTTCCTTCAAATACTATTATGAGGATGACACAACAAAAGGGTCTGAATTGAACAAGTTCTTCAAAGTTTTCACAATTGAGAAGGTTGATTATAATTACGATGATGTTGATAATGATAATGAGAGGGTTTCGAATGTTGATGTTTTGGATGCAGAACTTGAATAA

Protein sequence

>Msa1015410

MDLISTSSESGQLTVENSVIDADSSQFYSFSDKESWKSLVFKSIKEIEDFYFNYAYNTGFSVRSMLKSKNNSQNKKSDKVHYVRYACNKEGFKKGSLLNPKNRPTCDSPVLVEYEKAKEKPEERVGCKAGIYLKLDEALNVYKIYRWEVDHCHPLHKPEHLRYLRSFREVNQVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFRFSDLKNYLMTTRQKEMVAGEATVIQEFFRNEALSKPSFYYDIQVDAAEDIASIFWADGIMQQDYALFGDVVSFDTTYRTNNKYRPLELKVLLPFLVLTIIVKSVLFGAALLYDETSTTFDWLFTTFLKCMSNNKPQTIYTDQVGALLKSIPNVFQGVFHGLCSWHMGENAKKNLGSRANSVFFDELTNLVSNVEDESDFDYNWDQMMKNCFNGRPTSDFKWLVQTHSNRMHWSSVWVRSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVRFFSHFKIMVQRMRDNHVDLDFKAANTRTKNNYPNSQLMRSVVNKYTPSCFSFIHSQYDLSFKYYYEDDTTKGSELNKFFKVFTIEKVDYNYDDVDNDNERVSNVDVLDAELE*