Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015410 | XP_039685680.1 | 83.003 | 606 | 82 | 2 | 1 | 590 | 1 | 601 | 0.0 | 1026 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015410 | sp|Q9SZL8|FRS5_ARATH | 28.454 | 485 | 299 | 11 | 32 | 504 | 70 | 518 | 5.25e-55 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015410 | D3YBB9 | 74.454 | 595 | 142 | 2 | 1 | 590 | 49 | 638 | 0.0 | 932 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1015410 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015410 | MtrunA17_Chr2g0324011 | 30.572 | 507 | 318 | 8 | 36 | 537 | 8 | 485 | 6.12e-84 | 273 |
| Msa1015410 | MtrunA17_Chr3g0082121 | 33.470 | 487 | 286 | 9 | 41 | 525 | 49 | 499 | 2.07e-80 | 267 |
| Msa1015410 | MtrunA17_Chr1g0202341 | 31.659 | 458 | 272 | 11 | 34 | 484 | 50 | 473 | 2.12e-63 | 221 |
| Msa1015410 | MtrunA17_Chr8g0363841 | 29.600 | 500 | 317 | 11 | 40 | 535 | 22 | 490 | 2.01e-62 | 218 |
| Msa1015410 | MtrunA17_Chr1g0164591 | 34.154 | 325 | 194 | 5 | 131 | 453 | 1 | 307 | 6.04e-57 | 194 |
| Msa1015410 | MtrunA17_Chr2g0296781 | 29.638 | 469 | 292 | 11 | 39 | 504 | 1 | 434 | 2.46e-54 | 196 |
| Msa1015410 | MtrunA17_Chr1g0172971 | 81.197 | 117 | 21 | 1 | 1 | 116 | 1 | 117 | 4.95e-54 | 192 |
| Msa1015410 | MtrunA17_Chr5g0448761 | 27.606 | 518 | 324 | 13 | 27 | 529 | 52 | 533 | 5.48e-53 | 193 |
| Msa1015410 | MtrunA17_Chr1g0203721 | 26.953 | 512 | 325 | 12 | 40 | 539 | 68 | 542 | 1.23e-52 | 193 |
| Msa1015410 | MtrunA17_Chr7g0258861 | 34.091 | 308 | 178 | 6 | 36 | 340 | 8 | 293 | 8.10e-50 | 174 |
| Msa1015410 | MtrunA17_Chr2g0287651 | 27.183 | 504 | 317 | 15 | 9 | 501 | 48 | 512 | 4.09e-49 | 183 |
| Msa1015410 | MtrunA17_Chr6g0458391 | 26.545 | 550 | 337 | 14 | 41 | 580 | 231 | 723 | 4.11e-48 | 179 |
| Msa1015410 | MtrunA17_Chr6g0477261 | 32.209 | 326 | 211 | 4 | 180 | 504 | 7 | 323 | 4.73e-48 | 178 |
| Msa1015410 | MtrunA17_Chr5g0441581 | 26.019 | 515 | 322 | 14 | 32 | 535 | 26 | 492 | 3.39e-44 | 167 |
| Msa1015410 | MtrunA17_Chr1g0196541 | 27.394 | 449 | 286 | 12 | 39 | 483 | 1 | 413 | 4.00e-43 | 164 |
| Msa1015410 | MtrunA17_Chr6g0475591 | 93.151 | 73 | 5 | 0 | 188 | 260 | 1 | 73 | 2.45e-41 | 144 |
| Msa1015410 | MtrunA17_Chr1g0203051 | 21.989 | 523 | 367 | 8 | 50 | 567 | 94 | 580 | 1.17e-40 | 156 |
| Msa1015410 | MtrunA17_Chr2g0329031 | 25.873 | 487 | 309 | 12 | 23 | 501 | 2 | 444 | 4.86e-40 | 155 |
| Msa1015410 | MtrunA17_Chr1g0198761 | 26.769 | 523 | 332 | 16 | 36 | 541 | 48 | 536 | 6.66e-40 | 155 |
| Msa1015410 | MtrunA17_Chr5g0440451 | 23.415 | 568 | 368 | 14 | 34 | 581 | 42 | 562 | 1.61e-37 | 149 |
| Msa1015410 | MtrunA17_Chr2g0276841 | 26.758 | 512 | 315 | 17 | 49 | 541 | 84 | 554 | 2.59e-37 | 147 |
| Msa1015410 | MtrunA17_Chr2g0291591 | 25.197 | 508 | 311 | 15 | 16 | 504 | 44 | 501 | 1.28e-36 | 144 |
| Msa1015410 | MtrunA17_Chr2g0290391 | 25.229 | 547 | 348 | 17 | 38 | 564 | 54 | 559 | 1.61e-36 | 145 |
| Msa1015410 | MtrunA17_Chr5g0431001 | 26.535 | 456 | 285 | 13 | 40 | 478 | 66 | 488 | 2.00e-36 | 142 |
| Msa1015410 | MtrunA17_Chr1g0207551 | 25.263 | 475 | 322 | 9 | 27 | 499 | 26 | 469 | 2.75e-35 | 142 |
| Msa1015410 | MtrunA17_Chr3g0118611 | 27.473 | 364 | 246 | 7 | 221 | 581 | 111 | 459 | 3.77e-33 | 135 |
| Msa1015410 | MtrunA17_Chr3g0080351 | 23.541 | 514 | 351 | 10 | 23 | 534 | 64 | 537 | 1.89e-31 | 130 |
| Msa1015410 | MtrunA17_Chr2g0294841 | 26.452 | 465 | 288 | 16 | 41 | 487 | 51 | 479 | 8.12e-31 | 128 |
| Msa1015410 | MtrunA17_Chr2g0291581 | 24.532 | 481 | 310 | 11 | 16 | 489 | 49 | 483 | 1.17e-30 | 127 |
| Msa1015410 | MtrunA17_Chr2g0287061 | 23.819 | 508 | 304 | 15 | 41 | 541 | 189 | 620 | 8.75e-30 | 125 |
| Msa1015410 | MtrunA17_Chr5g0448511 | 26.415 | 318 | 215 | 7 | 216 | 528 | 1 | 304 | 5.20e-29 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015410 | AT4G38180.1 | 28.454 | 485 | 299 | 11 | 32 | 504 | 70 | 518 | 5.34e-56 | 202 |
| Msa1015410 | AT1G76320.3 | 25.983 | 458 | 292 | 12 | 50 | 501 | 12 | 428 | 2.49e-36 | 144 |
| Msa1015410 | AT1G76320.2 | 25.983 | 458 | 292 | 12 | 50 | 501 | 12 | 428 | 5.23e-36 | 144 |
| Msa1015410 | AT1G76320.1 | 25.983 | 458 | 292 | 12 | 50 | 501 | 12 | 428 | 5.63e-36 | 144 |
| Msa1015410 | AT1G76320.4 | 25.983 | 458 | 292 | 12 | 50 | 501 | 12 | 428 | 5.63e-36 | 144 |
| Msa1015410 | AT4G15090.1 | 24.689 | 482 | 330 | 10 | 50 | 528 | 66 | 517 | 2.68e-35 | 142 |
| Msa1015410 | AT4G15090.5 | 24.689 | 482 | 330 | 10 | 50 | 528 | 66 | 517 | 2.68e-35 | 142 |
| Msa1015410 | AT4G15090.3 | 24.689 | 482 | 330 | 10 | 50 | 528 | 66 | 517 | 2.68e-35 | 142 |
| Msa1015410 | AT4G15090.2 | 24.689 | 482 | 330 | 10 | 50 | 528 | 66 | 517 | 2.68e-35 | 142 |
| Msa1015410 | AT4G15090.4 | 24.689 | 482 | 330 | 10 | 50 | 528 | 66 | 517 | 2.68e-35 | 142 |
| Msa1015410 | AT3G06250.2 | 24.366 | 513 | 306 | 13 | 34 | 541 | 189 | 624 | 4.64e-33 | 135 |
| Msa1015410 | AT3G06250.1 | 24.366 | 513 | 306 | 13 | 34 | 541 | 189 | 624 | 4.64e-33 | 135 |
| Msa1015410 | AT3G06250.3 | 24.366 | 513 | 306 | 13 | 34 | 541 | 189 | 624 | 4.64e-33 | 135 |
| Msa1015410 | AT2G27110.2 | 25.231 | 432 | 289 | 10 | 127 | 551 | 108 | 512 | 1.42e-32 | 134 |
| Msa1015410 | AT2G27110.1 | 25.231 | 432 | 289 | 10 | 127 | 551 | 108 | 512 | 1.42e-32 | 134 |
| Msa1015410 | AT1G10240.2 | 24.701 | 502 | 338 | 16 | 49 | 541 | 62 | 532 | 1.64e-32 | 133 |
| Msa1015410 | AT1G10240.1 | 24.701 | 502 | 338 | 16 | 49 | 541 | 62 | 532 | 1.64e-32 | 133 |
| Msa1015410 | AT2G27110.3 | 27.035 | 344 | 234 | 6 | 213 | 551 | 36 | 367 | 3.43e-32 | 132 |
| Msa1015410 | AT5G28530.1 | 23.745 | 518 | 347 | 14 | 40 | 541 | 60 | 545 | 1.11e-31 | 130 |
| Msa1015410 | AT4G38170.1 | 26.087 | 299 | 200 | 6 | 235 | 528 | 24 | 306 | 3.21e-31 | 128 |
| Msa1015410 | AT5G28530.3 | 25.225 | 444 | 287 | 13 | 40 | 467 | 60 | 474 | 4.56e-31 | 129 |
| Msa1015410 | AT5G28530.2 | 25.225 | 444 | 287 | 13 | 40 | 467 | 60 | 474 | 4.56e-31 | 129 |
| Msa1015410 | AT3G22170.2 | 22.112 | 502 | 340 | 12 | 34 | 528 | 69 | 526 | 4.01e-30 | 126 |
| Msa1015410 | AT3G22170.1 | 22.112 | 502 | 340 | 12 | 34 | 528 | 69 | 526 | 4.01e-30 | 126 |
| Msa1015410 | AT5G18960.2 | 23.585 | 530 | 312 | 16 | 24 | 541 | 200 | 648 | 1.28e-27 | 118 |
| Msa1015410 | AT5G18960.1 | 23.585 | 530 | 312 | 16 | 24 | 541 | 200 | 648 | 1.28e-27 | 118 |
| Msa1015410 | AT1G80010.1 | 24.194 | 496 | 320 | 17 | 41 | 519 | 101 | 557 | 8.45e-26 | 112 |
| Msa1015410 | AT2G32250.5 | 23.529 | 459 | 270 | 13 | 50 | 501 | 53 | 437 | 1.10e-24 | 109 |
| Msa1015410 | AT2G32250.6 | 23.529 | 459 | 270 | 13 | 50 | 501 | 53 | 437 | 1.28e-24 | 109 |
| Msa1015410 | AT2G32250.1 | 23.529 | 459 | 270 | 13 | 50 | 501 | 53 | 437 | 1.28e-24 | 109 |
| Msa1015410 | AT2G32250.3 | 23.529 | 459 | 270 | 13 | 50 | 501 | 53 | 437 | 1.28e-24 | 109 |
| Msa1015410 | AT2G32250.7 | 23.529 | 459 | 270 | 13 | 50 | 501 | 12 | 396 | 1.50e-24 | 108 |
| Msa1015410 | AT2G32250.2 | 23.529 | 459 | 270 | 13 | 50 | 501 | 53 | 437 | 1.53e-24 | 109 |
| Msa1015410 | AT2G32250.4 | 23.529 | 459 | 270 | 13 | 50 | 501 | 53 | 437 | 1.53e-24 | 109 |
| Msa1015410 | AT2G32250.8 | 23.529 | 459 | 270 | 13 | 50 | 501 | 12 | 396 | 1.56e-24 | 108 |
| Msa1015410 | AT4G19990.3 | 23.210 | 461 | 280 | 13 | 41 | 488 | 27 | 426 | 5.74e-24 | 107 |
| Msa1015410 | AT4G19990.4 | 23.210 | 461 | 280 | 13 | 41 | 488 | 27 | 426 | 5.74e-24 | 107 |
| Msa1015410 | AT4G19990.7 | 23.210 | 461 | 280 | 13 | 41 | 488 | 41 | 440 | 6.07e-24 | 107 |
| Msa1015410 | AT4G19990.5 | 23.210 | 461 | 280 | 13 | 41 | 488 | 27 | 426 | 6.37e-24 | 107 |
| Msa1015410 | AT4G19990.6 | 23.210 | 461 | 280 | 13 | 41 | 488 | 27 | 426 | 1.14e-23 | 106 |
| Msa1015410 | AT4G19990.2 | 23.210 | 461 | 280 | 13 | 41 | 488 | 27 | 426 | 1.14e-23 | 106 |
| Msa1015410 | AT4G19990.1 | 27.536 | 276 | 182 | 6 | 219 | 488 | 106 | 369 | 1.26e-23 | 105 |
| Msa1015410 | AT1G52520.1 | 21.996 | 541 | 358 | 17 | 41 | 562 | 91 | 586 | 1.57e-23 | 105 |
Find 125 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 7_1:-27767691 | Msa1015410:CDS |
| CTTTAGTCATTTCAAAATTA+TGG | 0.169397 | 7_1:-27767424 | Msa1015410:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 7_1:+27766557 | None:intergenic |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 7_1:-27767973 | Msa1015410:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 7_1:-27768488 | Msa1015410:CDS |
| ACCAACCTGGTCTGTGTATA+TGG | 0.266055 | 7_1:+27767827 | None:intergenic |
| TATGGTTTGAGGTTTATTAT+TGG | 0.269219 | 7_1:+27767845 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 7_1:+27766563 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 7_1:-27767650 | Msa1015410:CDS |
| TGGTCTTTGCTCATGGCATA+TGG | 0.321670 | 7_1:-27767760 | Msa1015410:CDS |
| GAGGGATAATCATGTTGATT+TGG | 0.335640 | 7_1:-27767391 | Msa1015410:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 7_1:+27768438 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 7_1:-27766314 | Msa1015410:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 7_1:+27766495 | None:intergenic |
| TGGTTTAGAATTGAAGGTTC+TGG | 0.348323 | 7_1:-27768346 | Msa1015410:intron |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 7_1:-27767127 | Msa1015410:CDS |
| TCATGTTGATTTGGACTTCA+AGG | 0.359475 | 7_1:-27767382 | Msa1015410:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 7_1:+27766834 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 7_1:-27767550 | Msa1015410:CDS |
| ATCGTAAAGAGTGTGTTATT+TGG | 0.370850 | 7_1:-27767939 | Msa1015410:CDS |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 7_1:-27766333 | Msa1015410:three_prime_UTR |
| GTGTTCTTGAGGCAGGAAAA+AGG | 0.375033 | 7_1:-27766711 | Msa1015410:three_prime_UTR |
| TTCCTTCAAATACTATTATG+AGG | 0.380062 | 7_1:-27767250 | Msa1015410:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 7_1:-27768431 | Msa1015410:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 7_1:-27768439 | Msa1015410:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 7_1:-27769351 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 7_1:-27767551 | Msa1015410:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 7_1:+27768968 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 7_1:-27766571 | Msa1015410:three_prime_UTR |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 7_1:+27766581 | None:intergenic |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 7_1:-27766686 | Msa1015410:three_prime_UTR |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 7_1:+27769207 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 7_1:-27769197 | Msa1015410:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 7_1:-27767002 | Msa1015410:three_prime_UTR |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.412394 | 7_1:-27766718 | Msa1015410:three_prime_UTR |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 7_1:+27767079 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 7_1:-27769126 | Msa1015410:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 7_1:-27767044 | Msa1015410:three_prime_UTR |
| CGAGAAGTAAATCAAGTTCA+AGG | 0.420879 | 7_1:-27768791 | Msa1015410:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 7_1:+27767078 | None:intergenic |
| TGGTCTGTGTATATGGTTTG+AGG | 0.427138 | 7_1:+27767834 | None:intergenic |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 7_1:-27768909 | Msa1015410:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 7_1:-27768877 | Msa1015410:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 7_1:-27768926 | Msa1015410:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 7_1:+27766901 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 7_1:-27769043 | Msa1015410:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 7_1:-27768761 | Msa1015410:CDS |
| ATGTTCTGGTTTAGAATTGA+AGG | 0.453944 | 7_1:-27768352 | Msa1015410:intron |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 7_1:-27767596 | Msa1015410:CDS |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 7_1:+27768821 | None:intergenic |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 7_1:-27767001 | Msa1015410:three_prime_UTR |
| TATGAGGATGACACAACAAA+AGG | 0.468736 | 7_1:-27767234 | Msa1015410:CDS |
| ATCCGAGAGTGGACAATTGA+CGG | 0.474201 | 7_1:-27769272 | Msa1015410:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 7_1:-27768716 | Msa1015410:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 7_1:+27768932 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 7_1:-27769139 | Msa1015410:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 7_1:-27768648 | Msa1015410:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 7_1:+27767960 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 7_1:-27767649 | Msa1015410:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 7_1:-27768635 | Msa1015410:CDS |
| CTATCTGTGAACCATCTGTT+GGG | 0.492981 | 7_1:-27766610 | Msa1015410:three_prime_UTR |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 7_1:+27767330 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 7_1:-27768729 | Msa1015410:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 7_1:+27768543 | None:intergenic |
| ATCCTCATAATAGTATTTGA+AGG | 0.503414 | 7_1:+27767248 | None:intergenic |
| AAATTATGGTTCAGAGAATG+AGG | 0.506271 | 7_1:-27767410 | Msa1015410:CDS |
| AACCGTCAATTGTCCACTCT+CGG | 0.506734 | 7_1:+27769270 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 7_1:-27767563 | Msa1015410:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 7_1:-27767065 | Msa1015410:three_prime_UTR |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 7_1:+27768677 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 7_1:-27767545 | Msa1015410:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 7_1:+27767085 | None:intergenic |
| GGTCTTTGCTCATGGCATAT+GGG | 0.519436 | 7_1:-27767759 | Msa1015410:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 7_1:+27767442 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 7_1:-27768873 | Msa1015410:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 7_1:-27767064 | Msa1015410:three_prime_UTR |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 7_1:+27767253 | None:intergenic |
| ACAAAATAAGAAATCAGATA+AGG | 0.530342 | 7_1:-27769077 | Msa1015410:CDS |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 7_1:-27766505 | Msa1015410:three_prime_UTR |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 7_1:-27766844 | Msa1015410:three_prime_UTR |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 7_1:-27769032 | Msa1015410:CDS |
| ATGAGGATGACACAACAAAA+GGG | 0.539769 | 7_1:-27767233 | Msa1015410:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 7_1:+27767447 | None:intergenic |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 7_1:-27769207 | Msa1015410:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 7_1:-27769031 | Msa1015410:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 7_1:+27768833 | None:intergenic |
| TTGAATAAAACCTTTCCCCA+AGG | 0.553519 | 7_1:-27767095 | Msa1015410:exon |
| GCTATCTGTGAACCATCTGT+TGG | 0.564131 | 7_1:-27766611 | Msa1015410:three_prime_UTR |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 7_1:-27769248 | Msa1015410:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 7_1:-27768713 | Msa1015410:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 7_1:-27766758 | Msa1015410:three_prime_UTR |
| ACTTCAACAACGCACCAACC+TGG | 0.575692 | 7_1:+27767814 | None:intergenic |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 7_1:+27767329 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 7_1:+27766599 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 7_1:-27766480 | Msa1015410:three_prime_UTR |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 7_1:+27767308 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 7_1:-27768722 | Msa1015410:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 7_1:-27766722 | Msa1015410:three_prime_UTR |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 7_1:-27766418 | Msa1015410:three_prime_UTR |
| TCAGCTTATCGACAGACGGA+CGG | 0.597939 | 7_1:+27766863 | None:intergenic |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 7_1:+27766643 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 7_1:-27768642 | Msa1015410:CDS |
| GAGGCTTTAACAATTTAAGC+GGG | 0.600751 | 7_1:-27766461 | Msa1015410:three_prime_UTR |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 7_1:+27766810 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 7_1:-27768728 | Msa1015410:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 7_1:-27768639 | Msa1015410:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 7_1:-27766755 | Msa1015410:three_prime_UTR |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 7_1:-27767332 | Msa1015410:CDS |
| ATATCAACTTCATCCGAGAG+TGG | 0.612216 | 7_1:-27769283 | Msa1015410:CDS |
| ACCATATACACAGACCAGGT+TGG | 0.612259 | 7_1:-27767828 | Msa1015410:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 7_1:+27768983 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 7_1:+27767594 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 7_1:-27768708 | Msa1015410:CDS |
| TGAGGCTTTAACAATTTAAG+CGG | 0.627823 | 7_1:-27766462 | Msa1015410:three_prime_UTR |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 7_1:+27767080 | None:intergenic |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 7_1:-27768874 | Msa1015410:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 7_1:+27766859 | None:intergenic |
| AATTATGGTTCAGAGAATGA+GGG | 0.653552 | 7_1:-27767409 | Msa1015410:CDS |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 7_1:-27766733 | Msa1015410:three_prime_UTR |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 7_1:+27766983 | None:intergenic |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 7_1:-27767000 | Msa1015410:three_prime_UTR |
| TGAATGAATGAAAAGCAAGA+TGG | 0.673847 | 7_1:+27767288 | None:intergenic |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 7_1:-27767149 | Msa1015410:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 7_1:-27767148 | Msa1015410:CDS |
| TCAAACCATATACACAGACC+AGG | 0.691222 | 7_1:-27767832 | Msa1015410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr7_1:27769220-27769239 | Msa1015410:CDS | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr7_1:27766512-27766531 | Msa1015410:three_prime_UTR | 20.0% |
| !! | ACAAAATAAGAAATCAGATA+AGG | - | chr7_1:27766574-27766593 | Msa1015410:three_prime_UTR | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr7_1:27766774-27766793 | Msa1015410:three_prime_UTR | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr7_1:27767367-27767386 | Msa1015410:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr7_1:27767395-27767414 | Msa1015410:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr7_1:27768030-27768049 | Msa1015410:intron | 20.0% |
| !! | CTTTAGTCATTTCAAAATTA+TGG | - | chr7_1:27768227-27768246 | Msa1015410:intron | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | - | chr7_1:27769318-27769337 | Msa1015410:five_prime_UTR | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr7_1:27766403-27766422 | Msa1015410:three_prime_UTR | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr7_1:27766564-27766583 | None:intergenic | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr7_1:27766777-27766796 | Msa1015410:three_prime_UTR | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr7_1:27766778-27766797 | Msa1015410:three_prime_UTR | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr7_1:27766890-27766909 | Msa1015410:three_prime_UTR | 25.0% |
| ! | TGGATATCATAGTAAAAACT+TGG | + | chr7_1:27767091-27767110 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr7_1:27767125-27767144 | Msa1015410:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr7_1:27767126-27767145 | Msa1015410:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr7_1:27767212-27767231 | Msa1015410:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr7_1:27767238-27767257 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr7_1:27767285-27767304 | Msa1015410:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr7_1:27767387-27767406 | Msa1015410:CDS | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr7_1:27767394-27767413 | Msa1015410:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr7_1:27767649-27767668 | Msa1015410:CDS | 25.0% |
| !! | TATGGTTTGAGGTTTATTAT+TGG | + | chr7_1:27767809-27767828 | None:intergenic | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr7_1:27767868-27767887 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr7_1:27767960-27767979 | Msa1015410:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr7_1:27768034-27768053 | Msa1015410:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr7_1:27768401-27768420 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr7_1:27768401-27768420 | Msa1015410:intron | 25.0% |
| ! | ATCCTCATAATAGTATTTGA+AGG | + | chr7_1:27768406-27768425 | None:intergenic | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr7_1:27768502-27768521 | Msa1015410:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr7_1:27768503-27768522 | Msa1015410:CDS | 25.0% |
| !!! | GTGTTTGTTGTTGTTTTCAA+TGG | - | chr7_1:27766340-27766359 | Msa1015410:three_prime_UTR | 30.0% |
| CCATGATTCTTTATCACTAA+AGG | + | chr7_1:27766447-27766466 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr7_1:27766444-27766463 | Msa1015410:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr7_1:27766454-27766473 | Msa1015410:three_prime_UTR | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr7_1:27766619-27766638 | Msa1015410:three_prime_UTR | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr7_1:27766620-27766639 | Msa1015410:three_prime_UTR | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr7_1:27766709-27766728 | Msa1015410:three_prime_UTR | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr7_1:27766742-27766761 | Msa1015410:three_prime_UTR | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr7_1:27766821-27766840 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr7_1:27766923-27766942 | Msa1015410:three_prime_UTR | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr7_1:27766967-27766986 | Msa1015410:three_prime_UTR | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr7_1:27766977-27766996 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr7_1:27767163-27767182 | Msa1015410:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr7_1:27767216-27767235 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr7_1:27767220-27767239 | Msa1015410:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr7_1:27767299-27767318 | Msa1015410:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr7_1:27767324-27767343 | Msa1015410:CDS | 30.0% | |
| TGTACATAGCACAAATTCTA+AGG | + | chr7_1:27767434-27767453 | None:intergenic | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr7_1:27767458-27767477 | None:intergenic | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr7_1:27767694-27767713 | None:intergenic | 30.0% | |
| ! | ATCGTAAAGAGTGTGTTATT+TGG | - | chr7_1:27767712-27767731 | Msa1015410:CDS | 30.0% |
| !! | AGACATCAACTACTTTTGAT+TGG | - | chr7_1:27767755-27767774 | Msa1015410:CDS | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr7_1:27767859-27767878 | Msa1015410:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr7_1:27767871-27767890 | Msa1015410:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr7_1:27767916-27767935 | Msa1015410:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr7_1:27768001-27768020 | Msa1015410:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr7_1:27768002-27768021 | Msa1015410:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr7_1:27768212-27768231 | None:intergenic | 30.0% | |
| AAATTATGGTTCAGAGAATG+AGG | - | chr7_1:27768241-27768260 | Msa1015410:intron | 30.0% | |
| AATTATGGTTCAGAGAATGA+GGG | - | chr7_1:27768242-27768261 | Msa1015410:intron | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr7_1:27768346-27768365 | None:intergenic | 30.0% | |
| TGAATGAATGAAAAGCAAGA+TGG | + | chr7_1:27768366-27768385 | None:intergenic | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr7_1:27768461-27768480 | Msa1015410:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr7_1:27768574-27768593 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr7_1:27768575-27768594 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr7_1:27768586-27768605 | Msa1015410:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr7_1:27768587-27768606 | Msa1015410:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr7_1:27768683-27768702 | Msa1015410:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr7_1:27768686-27768705 | Msa1015410:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr7_1:27768751-27768770 | Msa1015410:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr7_1:27768918-27768937 | Msa1015410:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr7_1:27768965-27768984 | Msa1015410:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr7_1:27769073-27769092 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr7_1:27769080-27769099 | Msa1015410:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr7_1:27769091-27769110 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAATTTAAG+CGG | - | chr7_1:27769189-27769208 | Msa1015410:CDS | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr7_1:27769233-27769252 | Msa1015410:CDS | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | - | chr7_1:27769251-27769270 | Msa1015410:CDS | 30.0% |
| ATAACACTGGATTCTCTGTT+AGG | - | chr7_1:27766525-27766544 | Msa1015410:three_prime_UTR | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr7_1:27766608-27766627 | Msa1015410:three_prime_UTR | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr7_1:27766645-27766664 | Msa1015410:three_prime_UTR | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr7_1:27766686-27766705 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr7_1:27766703-27766722 | Msa1015410:three_prime_UTR | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr7_1:27766708-27766727 | Msa1015410:three_prime_UTR | 35.0% | |
| CGAGAAGTAAATCAAGTTCA+AGG | - | chr7_1:27766860-27766879 | Msa1015410:three_prime_UTR | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr7_1:27766922-27766941 | Msa1015410:three_prime_UTR | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr7_1:27767003-27767022 | Msa1015410:three_prime_UTR | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr7_1:27767305-27767324 | Msa1015410:CDS | 35.0% |
| !! | CACAAATTCTAAGGCAAGAT+AGG | + | chr7_1:27767425-27767444 | None:intergenic | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr7_1:27767884-27767903 | Msa1015410:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr7_1:27768044-27768063 | Msa1015410:intron | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr7_1:27768088-27768107 | Msa1015410:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr7_1:27768101-27768120 | Msa1015410:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr7_1:27768171-27768190 | Msa1015410:intron | 35.0% |
| ! | GAGGGATAATCATGTTGATT+TGG | - | chr7_1:27768260-27768279 | Msa1015410:intron | 35.0% |
| !! | TCATGTTGATTTGGACTTCA+AGG | - | chr7_1:27768269-27768288 | Msa1015410:intron | 35.0% |
| TATGAGGATGACACAACAAA+AGG | - | chr7_1:27768417-27768436 | Msa1015410:intron | 35.0% | |
| ATGAGGATGACACAACAAAA+GGG | - | chr7_1:27768418-27768437 | Msa1015410:intron | 35.0% | |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr7_1:27768524-27768543 | Msa1015410:CDS | 35.0% |
| TTGAATAAAACCTTTCCCCA+AGG | - | chr7_1:27768556-27768575 | Msa1015410:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | chr7_1:27768576-27768595 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr7_1:27768693-27768712 | Msa1015410:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr7_1:27768753-27768772 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr7_1:27768754-27768773 | Msa1015410:CDS | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | - | chr7_1:27768807-27768826 | Msa1015410:CDS | 35.0% | |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr7_1:27769019-27769038 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr7_1:27769146-27769165 | Msa1015410:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr7_1:27769171-27769190 | Msa1015410:CDS | 35.0% | |
| ! | GAGGCTTTAACAATTTAAGC+GGG | - | chr7_1:27769190-27769209 | Msa1015410:CDS | 35.0% |
| ATATCAACTTCATCCGAGAG+TGG | - | chr7_1:27766368-27766387 | Msa1015410:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr7_1:27766659-27766678 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr7_1:27766929-27766948 | Msa1015410:three_prime_UTR | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr7_1:27767133-27767152 | Msa1015410:CDS | 40.0% |
| ATTTGTGCTATGTACAGCCA+TGG | - | chr7_1:27767438-27767457 | Msa1015410:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr7_1:27767552-27767571 | Msa1015410:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr7_1:27767556-27767575 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr7_1:27767678-27767697 | Msa1015410:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr7_1:27767820-27767839 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr7_1:27767819-27767838 | Msa1015410:CDS | 40.0% | |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr7_1:27768100-27768119 | Msa1015410:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr7_1:27768207-27768226 | None:intergenic | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr7_1:27768649-27768668 | Msa1015410:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr7_1:27768650-27768669 | Msa1015410:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr7_1:27768696-27768715 | Msa1015410:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | chr7_1:27768795-27768814 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr7_1:27768820-27768839 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr7_1:27768844-27768863 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr7_1:27768929-27768948 | Msa1015410:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr7_1:27769011-27769030 | None:intergenic | 40.0% |
| CTATCTGTGAACCATCTGTT+GGG | - | chr7_1:27769041-27769060 | Msa1015410:CDS | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr7_1:27769097-27769116 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr7_1:27769159-27769178 | None:intergenic | 40.0% | |
| ATCCGAGAGTGGACAATTGA+CGG | - | chr7_1:27766379-27766398 | Msa1015410:three_prime_UTR | 45.0% | |
| AACCGTCAATTGTCCACTCT+CGG | + | chr7_1:27766384-27766403 | None:intergenic | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr7_1:27766671-27766690 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr7_1:27766713-27766732 | Msa1015410:three_prime_UTR | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr7_1:27766722-27766741 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr7_1:27766725-27766744 | Msa1015410:three_prime_UTR | 45.0% |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr7_1:27767009-27767028 | Msa1015410:three_prime_UTR | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr7_1:27767012-27767031 | Msa1015410:three_prime_UTR | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr7_1:27767111-27767130 | None:intergenic | 45.0% | |
| ACCATATACACAGACCAGGT+TGG | - | chr7_1:27767823-27767842 | Msa1015410:CDS | 45.0% | |
| ACCAACCTGGTCTGTGTATA+TGG | + | chr7_1:27767827-27767846 | None:intergenic | 45.0% | |
| TGGTCTTTGCTCATGGCATA+TGG | - | chr7_1:27767891-27767910 | Msa1015410:CDS | 45.0% | |
| GGTCTTTGCTCATGGCATAT+GGG | - | chr7_1:27767892-27767911 | Msa1015410:CDS | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr7_1:27768060-27768079 | None:intergenic | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr7_1:27768106-27768125 | Msa1015410:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr7_1:27768123-27768142 | Msa1015410:intron | 45.0% |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr7_1:27768319-27768338 | Msa1015410:intron | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr7_1:27768569-27768588 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr7_1:27768651-27768670 | Msa1015410:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr7_1:27768671-27768690 | None:intergenic | 45.0% | |
| GTGTTCTTGAGGCAGGAAAA+AGG | - | chr7_1:27768940-27768959 | Msa1015410:CDS | 45.0% | |
| GCTATCTGTGAACCATCTGT+TGG | - | chr7_1:27769040-27769059 | Msa1015410:CDS | 45.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | + | chr7_1:27766833-27766852 | None:intergenic | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr7_1:27766935-27766954 | Msa1015410:three_prime_UTR | 50.0% |
| ACTTCAACAACGCACCAACC+TGG | + | chr7_1:27767840-27767859 | None:intergenic | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr7_1:27768055-27768074 | Msa1015410:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr7_1:27768324-27768343 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr7_1:27768607-27768626 | Msa1015410:CDS | 50.0% | |
| TCAGCTTATCGACAGACGGA+CGG | + | chr7_1:27768791-27768810 | None:intergenic | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr7_1:27768893-27768912 | Msa1015410:CDS | 50.0% | |
| TTGAGGCAGGAAAAAGGCAG+AGG | - | chr7_1:27768946-27768965 | Msa1015410:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr7_1:27769055-27769074 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr7_1:27766938-27766957 | Msa1015410:three_prime_UTR | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr7_1:27767016-27767035 | Msa1015410:three_prime_UTR | 55.0% |
| GGACCGCATAAGCTGACTGT+TGG | + | chr7_1:27768325-27768344 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr7_1:27768933-27768952 | Msa1015410:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr7_1:27766943-27766962 | Msa1015410:three_prime_UTR | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr7_1:27768896-27768915 | Msa1015410:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 27766314 | 27769359 | 27766314 | ID=Msa1015410;Name=Msa1015410 |
| chr7_1 | mRNA | 27766314 | 27769359 | 27766314 | ID=Msa1015410-mRNA-1;Parent=Msa1015410;Name=Msa1015410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|0|0.66|0.66|1|1|3|796|590 |
| chr7_1 | exon | 27766314 | 27767985 | 27766314 | ID=Msa1015410-mRNA-1:exon:5914;Parent=Msa1015410-mRNA-1 |
| chr7_1 | exon | 27768347 | 27768360 | 27768347 | ID=Msa1015410-mRNA-1:exon:5913;Parent=Msa1015410-mRNA-1 |
| chr7_1 | exon | 27768432 | 27769359 | 27768432 | ID=Msa1015410-mRNA-1:exon:5912;Parent=Msa1015410-mRNA-1 |
| chr7_1 | five_prime_UTR | 27769315 | 27769359 | 27769315 | ID=Msa1015410-mRNA-1:five_prime_utr;Parent=Msa1015410-mRNA-1 |
| chr7_1 | CDS | 27768432 | 27769314 | 27768432 | ID=Msa1015410-mRNA-1:cds;Parent=Msa1015410-mRNA-1 |
| chr7_1 | CDS | 27768347 | 27768360 | 27768347 | ID=Msa1015410-mRNA-1:cds;Parent=Msa1015410-mRNA-1 |
| chr7_1 | CDS | 27767110 | 27767985 | 27767110 | ID=Msa1015410-mRNA-1:cds;Parent=Msa1015410-mRNA-1 |
| chr7_1 | three_prime_UTR | 27766314 | 27767109 | 27766314 | ID=Msa1015410-mRNA-1:three_prime_utr;Parent=Msa1015410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
