AlfalfaGEDB | Msa1015540

M. sativa cultivar zhongmu-4 / Msa1015540

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015540	XP_039683162.1	80.921	304	28	2	1	304	1	274	2.11e-159	457

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015540	sp\|Q6P819\|CNOT9_XENTR	48.913	276	109	1	33	308	28	271	1.77e-81	252

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015540	A0A396GV60	80.392	306	28	3	1	304	1	276	7.50e-158	452

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TFs/TRs:

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Gene ID	Type	Classification
Msa1015540	TR	Rcd1-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015540	MtrunA17_Chr7g0224601	80.392	306	28	3	1	304	1	276	1.44e-161	452
Msa1015540	MtrunA17_Chr1g0177151	57.895	266	80	1	14	279	20	253	1.22e-103	304
Msa1015540	MtrunA17_Chr3g0099561	56.679	277	88	1	28	304	26	270	7.42e-100	296
Msa1015540	MtrunA17_Chr8g0392781	50.737	339	100	4	1	304	11	317	1.55e-98	295
Msa1015540	MtrunA17_Chr5g0444621	67.619	210	68	0	100	309	60	269	2.98e-92	275
Msa1015540	MtrunA17_Chr6g0477171	67.895	190	61	0	88	277	52	241	6.34e-85	256
Msa1015540	MtrunA17_Chr3g0083821	68.085	94	30	0	103	196	37	130	2.01e-37	130
Msa1015540	MtrunA17_Chr3g0083811	58.763	97	40	0	208	304	1	97	1.14e-28	107
Msa1015540	MtrunA17_Chr5g0444631	86.792	53	7	0	134	186	4	56	4.18e-26	98.6
Msa1015540	MtrunA17_Chr6g0477181	69.811	53	16	0	1	53	11	63	8.22e-16	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015540	AT3G20800.1	53.795	303	102	3	7	304	14	283	6.95e-97	289
Msa1015540	AT5G12980.1	50.000	282	109	1	22	303	29	278	1.42e-88	268
Msa1015540	AT2G32550.3	36.726	226	117	4	86	294	39	255	2.05e-37	135
Msa1015540	AT2G32550.2	37.327	217	128	3	86	294	78	294	6.03e-37	135
Msa1015540	AT2G32550.1	40.116	172	100	2	126	294	29	200	8.97e-35	127

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Find 49 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATGTCAGATGATGA+TGG	0.481246	7_1:-28177225	Msa1015540:CDS
AACATGGTATTGGAAAGTGT+TGG	0.637520	7_1:-28177147	Msa1015540:CDS
AACTCAACAATCCTGATCTC+AGG	0.384176	7_1:-28181235	Msa1015540:CDS
AACTCGAGTGTGCAATGTTC+TGG	0.374857	7_1:-28178859	Msa1015540:CDS
AAGCCTTAAATGCTCAAATT+GGG	0.502413	7_1:+28178194	None:intergenic
AAGGAAATCTATGCCTTCTT+TGG	0.298112	7_1:+28177485	None:intergenic
AATAGAGAAACTAACAGTTT+TGG	0.311116	7_1:+28177404	None:intergenic
ACTCAACAATCCTGATCTCA+GGG	0.561365	7_1:-28181234	Msa1015540:CDS
AGATTCAACAGCGGAATAGT+AGG	0.487502	7_1:+28178897	None:intergenic
AGCACAAAGCATGGCATCCA+TGG	0.505480	7_1:-28181273	Msa1015540:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATTGTTGAGTTCAATAACA+AGG	+	chr7_1:28176934-28176953	None:intergenic	30.0%
AAGTAGATTGGTAAAAACCT+TGG	+	chr7_1:28176990-28177009	None:intergenic	30.0%
TGGACAAAAGAAAAGTAGAT+TGG	+	chr7_1:28177002-28177021	None:intergenic	30.0%
GTTCATTCTTTAGTGTATCA+TGG	-	chr7_1:28177255-28177274	Msa1015540:intron	30.0%
TGAATCTACGAAGCATAAAA+AGG	-	chr7_1:28177495-28177514	Msa1015540:CDS	30.0%
TTCTATCATGAAAGTCAGAT+TGG	+	chr7_1:28177694-28177713	None:intergenic	30.0%
TTATGACTAGAATCTCATTC+TGG	+	chr7_1:28178171-28178190	None:intergenic	30.0%
AGTTGGAAAATAAAAGGTGA+TGG	-	chr7_1:28179005-28179024	Msa1015540:intron	30.0%
AAAACGACTACATACACAAA+TGG	-	chr7_1:28179446-28179465	Msa1015540:intron	30.0%
TCATGGATTTGAATTCTCTA+CGG	-	chr7_1:28179800-28179819	Msa1015540:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	28176845	28181354	28176845	ID=Msa1015540;Name=Msa1015540
chr7_1	mRNA	28176845	28181354	28176845	ID=Msa1015540-mRNA-1;Parent=Msa1015540;Name=Msa1015540-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0\|0\|1\|0.71\|0.62\|8\|0\|326
chr7_1	exon	28181110	28181354	28181110	ID=Msa1015540-mRNA-1:exon:6007;Parent=Msa1015540-mRNA-1
chr7_1	exon	28179629	28179698	28179629	ID=Msa1015540-mRNA-1:exon:6006;Parent=Msa1015540-mRNA-1
chr7_1	exon	28178848	28178937	28178848	ID=Msa1015540-mRNA-1:exon:6005;Parent=Msa1015540-mRNA-1
chr7_1	exon	28178615	28178657	28178615	ID=Msa1015540-mRNA-1:exon:6004;Parent=Msa1015540-mRNA-1
chr7_1	exon	28178161	28178267	28178161	ID=Msa1015540-mRNA-1:exon:6003;Parent=Msa1015540-mRNA-1
chr7_1	exon	28177419	28177514	28177419	ID=Msa1015540-mRNA-1:exon:6002;Parent=Msa1015540-mRNA-1
chr7_1	exon	28177078	28177268	28177078	ID=Msa1015540-mRNA-1:exon:6001;Parent=Msa1015540-mRNA-1
chr7_1	exon	28176845	28176983	28176845	ID=Msa1015540-mRNA-1:exon:6000;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28181110	28181354	28181110	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28179629	28179698	28179629	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28178848	28178937	28178848	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28178615	28178657	28178615	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28178161	28178267	28178161	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28177419	28177514	28177419	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28177078	28177268	28177078	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28176845	28176983	28176845	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1

Gene Sequence

>Msa1015540

ATGAATAATGTTGCGTCGTTTGTAAGTCCTCGAACTGCTTCATCCCAGTCTAGCACCACAGCACAAAGCATGGCATCCATGGAACGCCTTGTTATTGAACTCAACAATCCTGATCTCAGGGAAAATGCTCTTCGTGTTCTCTCCAAGGTTTTTACCAATCTACTTTTCTTTTGTCCATTTTTAATATCTTTCATGGGATTCTCAAGAAATCCAGATCTTTGGAGAAGTTGTGATTCTCTGAAACTGATTGGGTTATTTCCGGAACTTGCACCTTTATTATGGAATTCTTATGGTACTATTGAAATATTTGTACAGGAAATAACTTCAATATATCCTACTATTCCGCTGTTGAATCTTACTCAGGCACAATCAACTCGAGTGTGCAATGTTCTGGAACTACTTCAGTGTGTGGCATCTCACCCTGATACAAAAATGTCATTTCTCAATGCTAACATGCCTTTATATTTTTATCCATTCCTTCAAACGACAAGCGAGTTAGCCCAATTTGAGCATTTAAGGCTTGCTAGTCTTGGAGTCATTGGTGCATTGGTGAAGGTTAACACCAAAGAAGGCATAGATTTCCTTCTGAGAAGTGAGATAATTCCACTATGCCTACGCAGCATGGAAATCGGCAAAGAATTATCCAAAACTGTTGCAACATTTATAATTCAAAAAATTATGTCAGATGATGATGGTTTGATTTATGTTTGTGGAACAGCAGAACGTTTTTTTGCAGTAGTTCAAGTTTTGAACATGGTATTGGAAAGTGTTGGCAATCAGCCTTCACATCAATTGATCAAACTTCTGATTCCATGTTATTCTCTTTTGTCTCAACATCCTAGGGCTTGCAATGCATTAAAAAGGCGACTTCCAAACATGCTGAAAACTGTCAATTTCATCAATTGCCTTCGCGTAAGTACTTCTTGTGATATAAGTAAATATAAAATTGATTTAGAAATTTTTTTTATACACGTGATATGA

Protein sequence

>Msa1015540

MNNVASFVSPRTASSQSSTTAQSMASMERLVIELNNPDLRENALRVLSKVFTNLLFFCPFLISFMGFSRNPDLWRSCDSLKLIGLFPELAPLLWNSYGTIEIFVQEITSIYPTIPLLNLTQAQSTRVCNVLELLQCVASHPDTKMSFLNANMPLYFYPFLQTTSELAQFEHLRLASLGVIGALVKVNTKEGIDFLLRSEIIPLCLRSMEIGKELSKTVATFIIQKIMSDDDGLIYVCGTAERFFAVVQVLNMVLESVGNQPSHQLIKLLIPCYSLLSQHPRACNALKRRLPNMLKTVNFINCLRVSTSCDISKYKIDLEIFFIHVI*