AlfalfaGEDB | Msa1015540

M. sativa cultivar zhongmu-4 / Msa1015540

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015540	XP_039683162.1	80.921	304	28	2	1	304	1	274	2.11e-159	457

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015540	sp\|Q6P819\|CNOT9_XENTR	48.913	276	109	1	33	308	28	271	1.77e-81	252

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015540	A0A396GV60	80.392	306	28	3	1	304	1	276	7.50e-158	452

TFs/TRs:

Gene ID	Type	Classification
Msa1015540	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015540	MtrunA17_Chr7g0224601	80.392	306	28	3	1	304	1	276	1.44e-161	452
Msa1015540	MtrunA17_Chr1g0177151	57.895	266	80	1	14	279	20	253	1.22e-103	304
Msa1015540	MtrunA17_Chr3g0099561	56.679	277	88	1	28	304	26	270	7.42e-100	296
Msa1015540	MtrunA17_Chr8g0392781	50.737	339	100	4	1	304	11	317	1.55e-98	295
Msa1015540	MtrunA17_Chr5g0444621	67.619	210	68	0	100	309	60	269	2.98e-92	275
Msa1015540	MtrunA17_Chr6g0477171	67.895	190	61	0	88	277	52	241	6.34e-85	256
Msa1015540	MtrunA17_Chr3g0083821	68.085	94	30	0	103	196	37	130	2.01e-37	130
Msa1015540	MtrunA17_Chr3g0083811	58.763	97	40	0	208	304	1	97	1.14e-28	107
Msa1015540	MtrunA17_Chr5g0444631	86.792	53	7	0	134	186	4	56	4.18e-26	98.6
Msa1015540	MtrunA17_Chr6g0477181	69.811	53	16	0	1	53	11	63	8.22e-16	72.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1015540	AT3G20800.1	53.795	303	102	3	7	304	14	283	6.95e-97	289
Msa1015540	AT5G12980.1	50.000	282	109	1	22	303	29	278	1.42e-88	268
Msa1015540	AT2G32550.3	36.726	226	117	4	86	294	39	255	2.05e-37	135
Msa1015540	AT2G32550.2	37.327	217	128	3	86	294	78	294	6.03e-37	135
Msa1015540	AT2G32550.1	40.116	172	100	2	126	294	29	200	8.97e-35	127

Find 49 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAGCCCAATTTGAGCATTTA+AGG	0.127092	7_1:-28178197	Msa1015540:CDS
CGGAACTTGCACCTTTATTA+TGG	0.186230	7_1:-28179662	Msa1015540:CDS
CAAGCCTTAAATGCTCAAAT+TGG	0.232859	7_1:+28178193	None:intergenic
TAAGAGGATTGGGTTATTTC+CGG	0.242539	7_1:-28179682	Msa1015540:intron
CCTTTATTATGGAATTCTTA+TGG	0.279542	7_1:-28179651	Msa1015540:CDS
TCTCAAGAAATCCAGATCTT+TGG	0.292233	7_1:-28181133	Msa1015540:CDS
AAGGAAATCTATGCCTTCTT+TGG	0.298112	7_1:+28177485	None:intergenic
AATAGAGAAACTAACAGTTT+TGG	0.311116	7_1:+28177404	None:intergenic
TTTGTGCTGTGGTGCTAGAC+TGG	0.350221	7_1:+28181288	None:intergenic
CATAATAAAGGTGCAAGTTC+CGG	0.352274	7_1:+28179663	None:intergenic
GGGCTTGCAATGCATTAAAA+AGG	0.353362	7_1:-28176962	Msa1015540:CDS
CAATGTTCTGGAACTACTTC+AGG	0.355418	7_1:-28178847	Msa1015540:intron
CCATAAGAATTCCATAATAA+AGG	0.371929	7_1:+28179651	None:intergenic
AACTCGAGTGTGCAATGTTC+TGG	0.374857	7_1:-28178859	Msa1015540:CDS
AACTCAACAATCCTGATCTC+AGG	0.384176	7_1:-28181235	Msa1015540:CDS
CTTGCTAGTCTTGGAGTCAT+TGG	0.399485	7_1:-28178174	Msa1015540:CDS
CATTTAAGGCTTGCTAGTCT+TGG	0.414086	7_1:-28178183	Msa1015540:CDS
CTAACTCGCTTGTCGTTTGA+AGG	0.424446	7_1:+28178217	None:intergenic
TCACAACTTCTCCAAAGATC+TGG	0.432216	7_1:+28181122	None:intergenic
TCGCTTGTCGTTTGAAGGAA+TGG	0.449153	7_1:+28178222	None:intergenic
TTCAATAACAAGGCGTTCCA+TGG	0.458343	7_1:+28181256	None:intergenic
TGCCTACGCAGCATGGAAAT+CGG	0.460606	7_1:-28177438	Msa1015540:CDS
TGGACAAAAGAAAAGTAGAT+TGG	0.472357	7_1:+28181178	None:intergenic
TACTATTGAAATATTTGTAC+AGG	0.478947	7_1:-28179628	Msa1015540:intron
AAAATTATGTCAGATGATGA+TGG	0.481246	7_1:-28177225	Msa1015540:CDS
TGCTCTTCGTGTTCTCTCCA+AGG	0.482455	7_1:-28181207	Msa1015540:CDS
AGATTCAACAGCGGAATAGT+AGG	0.487502	7_1:+28178897	None:intergenic
TTGTGCTGTGGTGCTAGACT+GGG	0.492743	7_1:+28181289	None:intergenic
AAGCCTTAAATGCTCAAATT+GGG	0.502413	7_1:+28178194	None:intergenic
GATGGTTTGATTTATGTTTG+TGG	0.502440	7_1:-28177207	Msa1015540:CDS
AGCACAAAGCATGGCATCCA+TGG	0.505480	7_1:-28181273	Msa1015540:CDS
GACTGGGATGAAGCAGTTCG+AGG	0.524129	7_1:+28181305	None:intergenic
TCACAGGTTAACACCAAAGA+AGG	0.528410	7_1:-28177498	Msa1015540:intron
TCTTGGAGTCATTGGTGCAT+TGG	0.530074	7_1:-28178166	Msa1015540:CDS
TCCACTATGCCTACGCAGCA+TGG	0.546502	7_1:-28177445	Msa1015540:CDS
GGATGCCATGCTTTGTGCTG+TGG	0.548520	7_1:+28181277	None:intergenic
ACTCAACAATCCTGATCTCA+GGG	0.561365	7_1:-28181234	Msa1015540:CDS
TCCGCTGTTGAATCTTACTC+AGG	0.564161	7_1:-28178889	Msa1015540:CDS
TCCATGCTGCGTAGGCATAG+TGG	0.580220	7_1:+28177444	None:intergenic
GAATTATCTCACTTCTCAGA+AGG	0.602747	7_1:+28177466	None:intergenic
TGCCGATTTCCATGCTGCGT+AGG	0.604124	7_1:+28177436	None:intergenic
AGTCATTGGTGCATTGGTGA+AGG	0.613240	7_1:-28178160	Msa1015540:intron
TAGCACCACAGCACAAAGCA+TGG	0.618274	7_1:-28181282	Msa1015540:CDS
CACAAGAAGTACTTACGCGA+AGG	0.626242	7_1:+28176898	None:intergenic
AGTTTGATCAATTGATGTGA+AGG	0.628164	7_1:+28177117	None:intergenic
AACATGGTATTGGAAAGTGT+TGG	0.637520	7_1:-28177147	Msa1015540:CDS
GATTGTTGAGTTCAATAACA+AGG	0.670356	7_1:+28181246	None:intergenic
TGAGACAAAAGAGAATAACA+TGG	0.703854	7_1:+28177087	None:intergenic
GCCTGAGTAAGATTCAACAG+CGG	0.773865	7_1:+28178888	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTATTGTTTTTATTTTTG+GGG	-	chr7_1:28177182-28177201	Msa1015540:CDS	10.0%
!!!	AAAAAATTAACTTGAATAAT+TGG	-	chr7_1:28177647-28177666	Msa1015540:intron	10.0%
!!	TGATTAACATATATTAAAAT+GGG	+	chr7_1:28178302-28178321	None:intergenic	10.0%
!!	ATGATTAACATATATTAAAA+TGG	+	chr7_1:28178303-28178322	None:intergenic	10.0%
!!	TATGTTAATCATTATTAATT+AGG	-	chr7_1:28178311-28178330	Msa1015540:intron	10.0%
!!	TAAAAAAGTTATTATGTATT+TGG	-	chr7_1:28178743-28178762	Msa1015540:intron	10.0%
!!	TTGAAAACATAAATATAAAT+TGG	+	chr7_1:28178911-28178930	None:intergenic	10.0%
!!!	TTGATTTTCAAATATTTTAT+TGG	+	chr7_1:28179419-28179438	None:intergenic	10.0%
!!!	TTTTAAAGTTACTAATAAAT+TGG	+	chr7_1:28180254-28180273	None:intergenic	10.0%
!!!	ATTAGTAACTTTAAAATTTT+TGG	-	chr7_1:28180258-28180277	Msa1015540:intron	10.0%
!!!	ATTATTTTTATAATGTTCTT+AGG	-	chr7_1:28180354-28180373	Msa1015540:intron	10.0%
!!!	TTATTTTTATAATGTTCTTA+GGG	-	chr7_1:28180355-28180374	Msa1015540:intron	10.0%
!!	GAAATTATTATAATTAACAA+AGG	+	chr7_1:28180640-28180659	None:intergenic	10.0%
!!!	TTTATTGTTTTTATTTTTGG+GGG	-	chr7_1:28177183-28177202	Msa1015540:CDS	15.0%
!!!	AATGTCTTTATATGATTTTT+TGG	-	chr7_1:28178123-28178142	Msa1015540:intron	15.0%
!!!	AGAAAATGAAAATTTTCATT+TGG	-	chr7_1:28178229-28178248	Msa1015540:CDS	15.0%
!!!	TTTCATTTTTTAAGTTTAAG+AGG	-	chr7_1:28178479-28178498	Msa1015540:intron	15.0%
!!!	CTTGATGTTAATAATTTTTA+TGG	-	chr7_1:28180079-28180098	Msa1015540:intron	15.0%
!!!	AGATAGTTTTTAAAATAACA+AGG	+	chr7_1:28180290-28180309	None:intergenic	15.0%
!!	TTTAAAAAAAATAAGTGGTT+AGG	+	chr7_1:28180561-28180580	None:intergenic	15.0%
!!!	GATTCTTTAAAAAAAATAAG+TGG	+	chr7_1:28180566-28180585	None:intergenic	15.0%
!!	TAACAAAGGAAAAATAAATA+TGG	+	chr7_1:28180626-28180645	None:intergenic	15.0%
!!!	TCCATTTTTAATATCTTTCA+TGG	-	chr7_1:28177018-28177037	Msa1015540:intron	20.0%
!!!	CCATTTTTAATATCTTTCAT+GGG	-	chr7_1:28177019-28177038	Msa1015540:intron	20.0%
!!!	GAAGATTTGTTTCAATTTTA+AGG	-	chr7_1:28177330-28177349	Msa1015540:intron	20.0%
!!	TTAATAGGATGAAATGAAAT+AGG	-	chr7_1:28177575-28177594	Msa1015540:intron	20.0%
!!!	TTTGGATAACTATGATTTTT+TGG	-	chr7_1:28178141-28178160	Msa1015540:intron	20.0%
!!!	GGTGAGAATAATATTTTATT+AGG	-	chr7_1:28178332-28178351	Msa1015540:intron	20.0%
!!!	TAATATTTTATTAGGTGCTA+TGG	-	chr7_1:28178340-28178359	Msa1015540:intron	20.0%
!!!	TTTTTTAAGTTTAAGAGGAT+TGG	-	chr7_1:28178484-28178503	Msa1015540:intron	20.0%
!!!	TTTTTAAGTTTAAGAGGATT+GGG	-	chr7_1:28178485-28178504	Msa1015540:intron	20.0%
!!	TACTATTGAAATATTTGTAC+AGG	-	chr7_1:28178549-28178568	Msa1015540:intron	20.0%
!!	CAAAAGTTAAAAAAAAAGCA+AGG	+	chr7_1:28178837-28178856	None:intergenic	20.0%
!!!	TTTTTTTAAAATTGTCCAAG+AGG	-	chr7_1:28179046-28179065	Msa1015540:intron	20.0%
!!	GTTTAATATTGTAACATCAA+TGG	-	chr7_1:28179088-28179107	Msa1015540:intron	20.0%
!!	AGGAATGGATAAAAATATAA+AGG	+	chr7_1:28179943-28179962	None:intergenic	20.0%
!!	ACTCATAACAAAATAAGAAA+AGG	-	chr7_1:28180106-28180125	Msa1015540:intron	20.0%
!!!	ATTCCTAATATGTATTTTCA+AGG	+	chr7_1:28180476-28180495	None:intergenic	20.0%
!!	AAGACTCTGTAAAAATAAAT+TGG	+	chr7_1:28180811-28180830	None:intergenic	20.0%
!!	TTGTTTATATGAATTTGACT+TGG	-	chr7_1:28180831-28180850	Msa1015540:intron	20.0%
!!	ATATTAGTAACATAAGTGAA+TGG	+	chr7_1:28180883-28180902	None:intergenic	20.0%
!!	AAATTCTTTCATATTAACAC+AGG	-	chr7_1:28181194-28181213	Msa1015540:CDS	20.0%
!!	AATTCTTTCATATTAACACA+GGG	-	chr7_1:28181195-28181214	Msa1015540:CDS	20.0%
!	CCCATGAAAGATATTAAAAA+TGG	+	chr7_1:28177022-28177041	None:intergenic	25.0%
!!!	TTTATTTTTGGGGGTTTTTT+TGG	-	chr7_1:28177192-28177211	Msa1015540:CDS	25.0%
!!!	TTATTTTTGGGGGTTTTTTT+GGG	-	chr7_1:28177193-28177212	Msa1015540:CDS	25.0%
!	TGTTACAAAATTGCATTAGT+TGG	-	chr7_1:28177396-28177415	Msa1015540:intron	25.0%
!!	TTGTGATATTCTTTATTTCG+TGG	-	chr7_1:28177450-28177469	Msa1015540:CDS	25.0%
!!	TGTGATATTCTTTATTTCGT+GGG	-	chr7_1:28177451-28177470	Msa1015540:CDS	25.0%
!	TAAGAAAGAGATGATTAGAA+AGG	-	chr7_1:28177520-28177539	Msa1015540:intron	25.0%
!	GTAAGAATGTGATAGTTAAT+AGG	-	chr7_1:28177560-28177579	Msa1015540:intron	25.0%
!!	GATCTAGATTTTATGACAAA+TGG	+	chr7_1:28177824-28177843	None:intergenic	25.0%
!!	GTTCAAATATTTGTTGAGAA+AGG	+	chr7_1:28178038-28178057	None:intergenic	25.0%
!	CCATAAGAATTCCATAATAA+AGG	+	chr7_1:28178529-28178548	None:intergenic	25.0%
!	CCTTTATTATGGAATTCTTA+TGG	-	chr7_1:28178526-28178545	Msa1015540:intron	25.0%
!!!	TCTAAGAGTATTACAAACAA+GGG	+	chr7_1:28178651-28178670	None:intergenic	25.0%
!!	AGATTGATCATTTGTTACTA+AGG	-	chr7_1:28178670-28178689	Msa1015540:intron	25.0%
!!	TGTATGTGTCTTAATTTTAG+TGG	-	chr7_1:28178717-28178736	Msa1015540:intron	25.0%
!	AAATTGGTGAATGAATGAAA+CGG	+	chr7_1:28178895-28178914	None:intergenic	25.0%
!	ACAAATGAGACATGATTATA+AGG	-	chr7_1:28178979-28178998	Msa1015540:intron	25.0%
!	CAAATGAGACATGATTATAA+GGG	-	chr7_1:28178980-28178999	Msa1015540:intron	25.0%
!!!	ATCAATTGTCATTTTACAAC+CGG	+	chr7_1:28179135-28179154	None:intergenic	25.0%
!!	GATATATTGAAGTTATTTCC+TGG	+	chr7_1:28179261-28179280	None:intergenic	25.0%
!!	GAAATGACATTTTTGTATCA+GGG	+	chr7_1:28179559-28179578	None:intergenic	25.0%
!!	AGAAATGACATTTTTGTATC+AGG	+	chr7_1:28179560-28179579	None:intergenic	25.0%
!!	ACAAAAATGTCATTTCTCAA+TGG	-	chr7_1:28179563-28179582	Msa1015540:intron	25.0%
!!	AGAAATCTAGAACAATTAAG+AGG	+	chr7_1:28179608-28179627	None:intergenic	25.0%
!	TTGTGATGTGAAACTATATT+TGG	-	chr7_1:28180161-28180180	Msa1015540:intron	25.0%
!	GTTCCTTGAAAATACATATT+AGG	-	chr7_1:28180470-28180489	Msa1015540:intron	25.0%
!!	AATAGAGAAACTAACAGTTT+TGG	+	chr7_1:28180776-28180795	None:intergenic	25.0%
!	AAAATTATGTCAGATGATGA+TGG	-	chr7_1:28180952-28180971	Msa1015540:intron	25.0%
	GATTGTTGAGTTCAATAACA+AGG	+	chr7_1:28176934-28176953	None:intergenic	30.0%
	AAGTAGATTGGTAAAAACCT+TGG	+	chr7_1:28176990-28177009	None:intergenic	30.0%
	TGGACAAAAGAAAAGTAGAT+TGG	+	chr7_1:28177002-28177021	None:intergenic	30.0%
!!!	TATTTTTGGGGGTTTTTTTG+GGG	-	chr7_1:28177194-28177213	Msa1015540:CDS	30.0%
	GTTCATTCTTTAGTGTATCA+TGG	-	chr7_1:28177255-28177274	Msa1015540:intron	30.0%
	TGAATCTACGAAGCATAAAA+AGG	-	chr7_1:28177495-28177514	Msa1015540:CDS	30.0%
	TTCTATCATGAAAGTCAGAT+TGG	+	chr7_1:28177694-28177713	None:intergenic	30.0%
	TTATGACTAGAATCTCATTC+TGG	+	chr7_1:28178171-28178190	None:intergenic	30.0%
!!	CTCTAAGAGTATTACAAACA+AGG	+	chr7_1:28178652-28178671	None:intergenic	30.0%
	AGTTGGAAAATAAAAGGTGA+TGG	-	chr7_1:28179005-28179024	Msa1015540:intron	30.0%
!	CAGATAGTGATAATTTTTCC+AGG	-	chr7_1:28179240-28179259	Msa1015540:intron	30.0%
	AAAACGACTACATACACAAA+TGG	-	chr7_1:28179446-28179465	Msa1015540:intron	30.0%
	TCATGGATTTGAATTCTCTA+CGG	-	chr7_1:28179800-28179819	Msa1015540:intron	30.0%
	AGCTGCACATAATTAAGAAA+TGG	+	chr7_1:28179914-28179933	None:intergenic	30.0%
	AAGCCTTAAATGCTCAAATT+GGG	+	chr7_1:28179986-28180005	None:intergenic	30.0%
!!	CAGCAAAAAACTACTTTTAG+AGG	+	chr7_1:28180393-28180412	None:intergenic	30.0%
	TGACTATCATGTACAAAAGA+AGG	+	chr7_1:28180662-28180681	None:intergenic	30.0%
	GAATGGCAAAAAAATTCAGA+AGG	+	chr7_1:28180866-28180885	None:intergenic	30.0%
!	GATGGTTTGATTTATGTTTG+TGG	-	chr7_1:28180970-28180989	Msa1015540:intron	30.0%
!!!	AGTAGTTCAAGTTTTGAACA+TGG	-	chr7_1:28181014-28181033	Msa1015540:intron	30.0%
!!!	TCAAGTTTTGAACATGGTAT+TGG	-	chr7_1:28181020-28181039	Msa1015540:intron	30.0%
	AGTTTGATCAATTGATGTGA+AGG	+	chr7_1:28181063-28181082	None:intergenic	30.0%
	TGAGACAAAAGAGAATAACA+TGG	+	chr7_1:28181093-28181112	None:intergenic	30.0%
	TCTCAAGAAATCCAGATCTT+TGG	-	chr7_1:28177044-28177063	Msa1015540:intron	35.0%
	TTATGCTTCGTAGATTCACA+GGG	+	chr7_1:28177493-28177512	None:intergenic	35.0%
	TTTATGCTTCGTAGATTCAC+AGG	+	chr7_1:28177494-28177513	None:intergenic	35.0%
	TTTGTGATATGCAAGTGAGA+TGG	+	chr7_1:28177848-28177867	None:intergenic	35.0%
	CGCTTTACATGTTCTCATAA+AGG	-	chr7_1:28177902-28177921	Msa1015540:intron	35.0%
	TAGATAATTCCTCGAAGAGT+TGG	+	chr7_1:28177996-28178015	None:intergenic	35.0%
	TGTGACTAAGTCTACTGAAA+GGG	+	chr7_1:28178088-28178107	None:intergenic	35.0%
	ATGTGACTAAGTCTACTGAA+AGG	+	chr7_1:28178089-28178108	None:intergenic	35.0%
!	TAAGAGGATTGGGTTATTTC+CGG	-	chr7_1:28178495-28178514	Msa1015540:intron	35.0%
!	CATAATAAAGGTGCAAGTTC+CGG	+	chr7_1:28178517-28178536	None:intergenic	35.0%
	ACATGATTATAAGGGAGAGT+TGG	-	chr7_1:28178988-28179007	Msa1015540:intron	35.0%
	AGGGAGAGTTGGAAAATAAA+AGG	-	chr7_1:28178999-28179018	Msa1015540:intron	35.0%
	TAAGTTCAAATCTCCTCAAC+CGG	-	chr7_1:28179113-28179132	Msa1015540:intron	35.0%
	ACATGAGAGAAAAATGCTAG+AGG	+	chr7_1:28179511-28179530	None:intergenic	35.0%
!	CATGTTTTCTTTACAGTGTG+TGG	-	chr7_1:28179526-28179545	Msa1015540:intron	35.0%
	AGTACTCTGAATAAGAGTCA+TGG	-	chr7_1:28179783-28179802	Msa1015540:intron	35.0%
	GGTTAGATGTAGTCAATTGT+AGG	-	chr7_1:28179825-28179844	Msa1015540:intron	35.0%
	TAGCCCAATTTGAGCATTTA+AGG	-	chr7_1:28179980-28179999	Msa1015540:intron	35.0%
	CAAGCCTTAAATGCTCAAAT+TGG	+	chr7_1:28179987-28180006	None:intergenic	35.0%
!	AAACTTACCAAGAGCACAAT+AGG	+	chr7_1:28180442-28180461	None:intergenic	35.0%
!	CTTTTGTACATGATAGTCAC+AGG	-	chr7_1:28180663-28180682	Msa1015540:intron	35.0%
	AAGGAAATCTATGCCTTCTT+TGG	+	chr7_1:28180695-28180714	None:intergenic	35.0%
	GAATTATCTCACTTCTCAGA+AGG	+	chr7_1:28180714-28180733	None:intergenic	35.0%
	ATCAAAGTTATCATCTCTGC+AGG	-	chr7_1:28180909-28180928	Msa1015540:intron	35.0%
!	AACATGGTATTGGAAAGTGT+TGG	-	chr7_1:28181030-28181049	Msa1015540:intron	35.0%
	TGAAACTTCTTAACCAACCT+AGG	+	chr7_1:28181120-28181139	None:intergenic	35.0%
!	TTGACAGTTTTCAGCATGTT+TGG	+	chr7_1:28181247-28181266	None:intergenic	35.0%
!	TTCAATAACAAGGCGTTCCA+TGG	+	chr7_1:28176924-28176943	None:intergenic	40.0%
	AACTCAACAATCCTGATCTC+AGG	-	chr7_1:28176942-28176961	Msa1015540:CDS	40.0%
	ACTCAACAATCCTGATCTCA+GGG	-	chr7_1:28176943-28176962	Msa1015540:CDS	40.0%
	TCACAACTTCTCCAAAGATC+TGG	+	chr7_1:28177058-28177077	None:intergenic	40.0%
	GGATTACATGTGTGTGTTCA+GGG	+	chr7_1:28177975-28177994	None:intergenic	40.0%
	TGGATTACATGTGTGTGTTC+AGG	+	chr7_1:28177976-28177995	None:intergenic	40.0%
	ACATGTAATCCAACTCTTCG+AGG	-	chr7_1:28177984-28178003	Msa1015540:intron	40.0%
	GTGACTAAGTCTACTGAAAG+GGG	+	chr7_1:28178087-28178106	None:intergenic	40.0%
	CGGAACTTGCACCTTTATTA+TGG	-	chr7_1:28178515-28178534	Msa1015540:intron	40.0%
	GTTCTTTGCTTTAGTACCTC+TGG	-	chr7_1:28178615-28178634	Msa1015540:CDS	40.0%
!!!	TGTCATTTTACAACCGGTTG+AGG	+	chr7_1:28179129-28179148	None:intergenic	40.0%
	AGATTCAACAGCGGAATAGT+AGG	+	chr7_1:28179283-28179302	None:intergenic	40.0%
!!	CAATGTTCTGGAACTACTTC+AGG	-	chr7_1:28179330-28179349	Msa1015540:intron	40.0%
!!	CATTTAAGGCTTGCTAGTCT+TGG	-	chr7_1:28179994-28180013	Msa1015540:intron	40.0%
	TTGCAATCCTATTGTGCTCT+TGG	-	chr7_1:28180432-28180451	Msa1015540:intron	40.0%
	TCACAGGTTAACACCAAAGA+AGG	-	chr7_1:28180679-28180698	Msa1015540:intron	40.0%
!	CTCTTTTGTCTCAACATCCT+AGG	-	chr7_1:28181100-28181119	Msa1015540:intron	40.0%
	TTTGTCTCAACATCCTAGGT+TGG	-	chr7_1:28181104-28181123	Msa1015540:intron	40.0%
	GGGCTTGCAATGCATTAAAA+AGG	-	chr7_1:28181215-28181234	Msa1015540:CDS	40.0%
!!	AGAGCATTTTCCCTGAGATC+AGG	+	chr7_1:28176956-28176975	None:intergenic	45.0%
!!	CTGCACTGTCACACTAGTTT+TGG	-	chr7_1:28177145-28177164	Msa1015540:CDS	45.0%
!	CAAGGGAAATAGTTTGCCAG+AGG	+	chr7_1:28178634-28178653	None:intergenic	45.0%
	GGCGAAAAACACAACAGTAG+TGG	-	chr7_1:28178764-28178783	Msa1015540:intron	45.0%
	TCCGCTGTTGAATCTTACTC+AGG	-	chr7_1:28179288-28179307	Msa1015540:intron	45.0%
	GCCTGAGTAAGATTCAACAG+CGG	+	chr7_1:28179292-28179311	None:intergenic	45.0%
	AACTCGAGTGTGCAATGTTC+TGG	-	chr7_1:28179318-28179337	Msa1015540:intron	45.0%
	GGATTTGAATTCTCTACGGC+TGG	-	chr7_1:28179804-28179823	Msa1015540:intron	45.0%
!	TCGCTTGTCGTTTGAAGGAA+TGG	+	chr7_1:28179958-28179977	None:intergenic	45.0%
!	CTAACTCGCTTGTCGTTTGA+AGG	+	chr7_1:28179963-28179982	None:intergenic	45.0%
!!	CTTGCTAGTCTTGGAGTCAT+TGG	-	chr7_1:28180003-28180022	Msa1015540:intron	45.0%
	TCTTGGAGTCATTGGTGCAT+TGG	-	chr7_1:28180011-28180030	Msa1015540:intron	45.0%
!	AGTCATTGGTGCATTGGTGA+AGG	-	chr7_1:28180017-28180036	Msa1015540:intron	45.0%
!!	CACAAGAAGTACTTACGCGA+AGG	+	chr7_1:28181282-28181301	None:intergenic	45.0%
!!!	TATTTTATTGTTTTTATTTT+TGG	-	chr7_1:28177180-28177199	Msa1015540:CDS	5.0%
!!!	ATTTTATTGTTTTTATTTTT+GGG	-	chr7_1:28177181-28177200	Msa1015540:CDS	5.0%
!	TTGTGCTGTGGTGCTAGACT+GGG	+	chr7_1:28176891-28176910	None:intergenic	50.0%
!	TTTGTGCTGTGGTGCTAGAC+TGG	+	chr7_1:28176892-28176911	None:intergenic	50.0%
	TAGCACCACAGCACAAAGCA+TGG	-	chr7_1:28176895-28176914	Msa1015540:CDS	50.0%
	AGCACAAAGCATGGCATCCA+TGG	-	chr7_1:28176904-28176923	Msa1015540:CDS	50.0%
	TGCTCTTCGTGTTCTCTCCA+AGG	-	chr7_1:28176970-28176989	Msa1015540:intron	50.0%
	ACAACTGAGCTACAGCCTCT+TGG	+	chr7_1:28179064-28179083	None:intergenic	50.0%
	TGCCTACGCAGCATGGAAAT+CGG	-	chr7_1:28180739-28180758	Msa1015540:intron	50.0%
	GACTGGGATGAAGCAGTTCG+AGG	+	chr7_1:28176875-28176894	None:intergenic	55.0%
	GGATGCCATGCTTTGTGCTG+TGG	+	chr7_1:28176903-28176922	None:intergenic	55.0%
	TCCACTATGCCTACGCAGCA+TGG	-	chr7_1:28180732-28180751	Msa1015540:intron	55.0%
	TCCATGCTGCGTAGGCATAG+TGG	+	chr7_1:28180736-28180755	None:intergenic	55.0%
!!	TGCCGATTTCCATGCTGCGT+AGG	+	chr7_1:28180744-28180763	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	28176845	28181354	28176845	ID=Msa1015540;Name=Msa1015540
chr7_1	mRNA	28176845	28181354	28176845	ID=Msa1015540-mRNA-1;Parent=Msa1015540;Name=Msa1015540-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0\|0\|1\|0.71\|0.62\|8\|0\|326
chr7_1	exon	28181110	28181354	28181110	ID=Msa1015540-mRNA-1:exon:6007;Parent=Msa1015540-mRNA-1
chr7_1	exon	28179629	28179698	28179629	ID=Msa1015540-mRNA-1:exon:6006;Parent=Msa1015540-mRNA-1
chr7_1	exon	28178848	28178937	28178848	ID=Msa1015540-mRNA-1:exon:6005;Parent=Msa1015540-mRNA-1
chr7_1	exon	28178615	28178657	28178615	ID=Msa1015540-mRNA-1:exon:6004;Parent=Msa1015540-mRNA-1
chr7_1	exon	28178161	28178267	28178161	ID=Msa1015540-mRNA-1:exon:6003;Parent=Msa1015540-mRNA-1
chr7_1	exon	28177419	28177514	28177419	ID=Msa1015540-mRNA-1:exon:6002;Parent=Msa1015540-mRNA-1
chr7_1	exon	28177078	28177268	28177078	ID=Msa1015540-mRNA-1:exon:6001;Parent=Msa1015540-mRNA-1
chr7_1	exon	28176845	28176983	28176845	ID=Msa1015540-mRNA-1:exon:6000;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28181110	28181354	28181110	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28179629	28179698	28179629	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28178848	28178937	28178848	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28178615	28178657	28178615	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28178161	28178267	28178161	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28177419	28177514	28177419	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28177078	28177268	28177078	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1
chr7_1	CDS	28176845	28176983	28176845	ID=Msa1015540-mRNA-1:cds;Parent=Msa1015540-mRNA-1

Gene Sequence

>Msa1015540

ATGAATAATGTTGCGTCGTTTGTAAGTCCTCGAACTGCTTCATCCCAGTCTAGCACCACAGCACAAAGCATGGCATCCATGGAACGCCTTGTTATTGAACTCAACAATCCTGATCTCAGGGAAAATGCTCTTCGTGTTCTCTCCAAGGTTTTTACCAATCTACTTTTCTTTTGTCCATTTTTAATATCTTTCATGGGATTCTCAAGAAATCCAGATCTTTGGAGAAGTTGTGATTCTCTGAAACTGATTGGGTTATTTCCGGAACTTGCACCTTTATTATGGAATTCTTATGGTACTATTGAAATATTTGTACAGGAAATAACTTCAATATATCCTACTATTCCGCTGTTGAATCTTACTCAGGCACAATCAACTCGAGTGTGCAATGTTCTGGAACTACTTCAGTGTGTGGCATCTCACCCTGATACAAAAATGTCATTTCTCAATGCTAACATGCCTTTATATTTTTATCCATTCCTTCAAACGACAAGCGAGTTAGCCCAATTTGAGCATTTAAGGCTTGCTAGTCTTGGAGTCATTGGTGCATTGGTGAAGGTTAACACCAAAGAAGGCATAGATTTCCTTCTGAGAAGTGAGATAATTCCACTATGCCTACGCAGCATGGAAATCGGCAAAGAATTATCCAAAACTGTTGCAACATTTATAATTCAAAAAATTATGTCAGATGATGATGGTTTGATTTATGTTTGTGGAACAGCAGAACGTTTTTTTGCAGTAGTTCAAGTTTTGAACATGGTATTGGAAAGTGTTGGCAATCAGCCTTCACATCAATTGATCAAACTTCTGATTCCATGTTATTCTCTTTTGTCTCAACATCCTAGGGCTTGCAATGCATTAAAAAGGCGACTTCCAAACATGCTGAAAACTGTCAATTTCATCAATTGCCTTCGCGTAAGTACTTCTTGTGATATAAGTAAATATAAAATTGATTTAGAAATTTTTTTTATACACGTGATATGA

Protein sequence

>Msa1015540

MNNVASFVSPRTASSQSSTTAQSMASMERLVIELNNPDLRENALRVLSKVFTNLLFFCPFLISFMGFSRNPDLWRSCDSLKLIGLFPELAPLLWNSYGTIEIFVQEITSIYPTIPLLNLTQAQSTRVCNVLELLQCVASHPDTKMSFLNANMPLYFYPFLQTTSELAQFEHLRLASLGVIGALVKVNTKEGIDFLLRSEIIPLCLRSMEIGKELSKTVATFIIQKIMSDDDGLIYVCGTAERFFAVVQVLNMVLESVGNQPSHQLIKLLIPCYSLLSQHPRACNALKRRLPNMLKTVNFINCLRVSTSCDISKYKIDLEIFFIHVI*