AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1015630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 37 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACATTCAAACCATTTA+TGG 0.079557 7_1:+29275893 None:intergenic
GTGCTTTGAACGTCCATAAA+TGG 0.278461 7_1:-29275906 Msa1015630:CDS
GTAGCTCGCCGTGGCGAGTT+GGG 0.311678 7_1:+29273888 None:intergenic
TCCCAAGTCCTTCGAAAGTA+AGG 0.396127 7_1:-29275929 Msa1015630:CDS
GGTAGCTCGCCGTGGCGAGT+TGG 0.400774 7_1:+29273887 None:intergenic
ATAGCTCGCCGTGGCGAGTT+AGG 0.406540 7_1:+29273958 None:intergenic
TGATGCTTCAAGAACTTATG+AGG 0.422461 7_1:-29274236 Msa1015630:CDS
GTGGTTGACATGTCTTCATA+TGG 0.455172 7_1:+29275812 None:intergenic
ACCCTTACTTTCGAAGGACT+TGG 0.470340 7_1:+29275927 None:intergenic
TAGCTCGCCGTGGCGAGTTG+GGG 0.471596 7_1:+29273889 None:intergenic
ACATAGAGACACTTGGTTTG+AGG 0.476543 7_1:-29274022 Msa1015630:intron
CCCTTACTTTCGAAGGACTT+GGG 0.477508 7_1:+29275928 None:intergenic
CCTAGGCGAGTGATTTCACT+GGG 0.489964 7_1:+29273855 None:intergenic
CCAAAACACATAGAGACACT+TGG 0.516328 7_1:-29274029 Msa1015630:intron
CAAAGCACCCTTACTTTCGA+AGG 0.524991 7_1:+29275921 None:intergenic
GGCGAGCTAGAACTCCGAAA+GGG 0.533637 7_1:-29273925 Msa1015630:CDS
AAGGGTAGGAAAACTAGCTA+TGG 0.543140 7_1:+29274207 None:intergenic
GGCATAATCATAATCCCAAA+GGG 0.548085 7_1:+29274189 None:intergenic
AGCTCGCCGTGGCGAGTTGG+GGG 0.551965 7_1:+29273890 None:intergenic
TTATGTACTTGCGGCTTCTG+TGG 0.572456 7_1:+29275793 None:intergenic
TGGCATAATCATAATCCCAA+AGG 0.590228 7_1:+29274188 None:intergenic
CGGCGAGCTAGAACTCCGAA+AGG 0.592524 7_1:-29273926 Msa1015630:CDS
GGCGAGTGATTTCACTGGGG+AGG 0.601043 7_1:+29273859 None:intergenic
TAATCATAATCCCAAAGGGT+AGG 0.601208 7_1:+29274193 None:intergenic
CGAGCTAGAACTCCGAAAGG+GGG 0.608349 7_1:-29273923 Msa1015630:CDS
CCCAAGTCCTTCGAAAGTAA+GGG 0.608380 7_1:-29275928 Msa1015630:CDS
GCGAGCTAGAACTCCGAAAG+GGG 0.613904 7_1:-29273924 Msa1015630:CDS
CGGCGAGCTATTACTCGCCA+CGG 0.624637 7_1:-29273946 Msa1015630:CDS
GATTTCACTGGGGAGGCGAG+TGG 0.634717 7_1:+29273866 None:intergenic
TTCGGAGTTCTAGCTCGCCG+TGG 0.653107 7_1:+29273929 None:intergenic
GAGCTAGAACTCCGAAAGGG+GGG 0.654682 7_1:-29273922 Msa1015630:CDS
AGGCGAGTGGTAGCTCGCCG+TGG 0.664970 7_1:+29273879 None:intergenic
TGGGACAATCAAAGCAAGCG+TGG 0.684170 7_1:+29275947 None:intergenic
AAAACACGTTGCGATAGATG+TGG 0.685090 7_1:-29275868 Msa1015630:CDS
TGGACTGTCCTAACTCGCCA+CGG 0.690155 7_1:-29273966 Msa1015630:CDS
TGGCGAGTAATAGCTCGCCG+TGG 0.707249 7_1:+29273949 None:intergenic
CTAGGCGAGTGATTTCACTG+GGG 0.835939 7_1:+29273856 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTAGTTAAATTTCT+TGG - chr7_1:29274253-29274272 Msa1015630:intron 10.0%
!! ATAAAATTATAAACTCAAAA+TGG - chr7_1:29274570-29274589 Msa1015630:intron 10.0%
!!! TTTCTATTTAGAATATTTTT+AGG - chr7_1:29274749-29274768 Msa1015630:intron 10.0%
!!! TTAATTTTAGTTAAATTTCT+TGG - chr7_1:29274253-29274272 Msa1015630:intron 10.0%
!! ATAAAATTATAAACTCAAAA+TGG - chr7_1:29274570-29274589 Msa1015630:intron 10.0%
!!! TTTCTATTTAGAATATTTTT+AGG - chr7_1:29274749-29274768 Msa1015630:intron 10.0%
!!! TATGAGTTTTTTTTTCAAAA+GGG + chr7_1:29274683-29274702 None:intergenic 15.0%
!!! TTATGAGTTTTTTTTTCAAA+AGG + chr7_1:29274684-29274703 None:intergenic 15.0%
!!! TCTTTATTTATTTTCAATTG+AGG - chr7_1:29274778-29274797 Msa1015630:intron 15.0%
!!! CTTTATTTATTTTCAATTGA+GGG - chr7_1:29274779-29274798 Msa1015630:intron 15.0%
!!! TTTTGTATAAAAAAAAACGA+GGG - chr7_1:29274842-29274861 Msa1015630:intron 15.0%
!!! TATGAGTTTTTTTTTCAAAA+GGG + chr7_1:29274683-29274702 None:intergenic 15.0%
!!! TTATGAGTTTTTTTTTCAAA+AGG + chr7_1:29274684-29274703 None:intergenic 15.0%
!!! TCTTTATTTATTTTCAATTG+AGG - chr7_1:29274778-29274797 Msa1015630:intron 15.0%
!!! CTTTATTTATTTTCAATTGA+GGG - chr7_1:29274779-29274798 Msa1015630:intron 15.0%
!!! TTTTGTATAAAAAAAAACGA+GGG - chr7_1:29274842-29274861 Msa1015630:intron 15.0%
!! CTATACTATAAACTGAAATA+TGG + chr7_1:29274104-29274123 None:intergenic 20.0%
!! CATATTTCAGTTTATAGTAT+AGG - chr7_1:29274102-29274121 Msa1015630:intron 20.0%
!! TATTATAATTCTTGCATGTA+TGG - chr7_1:29274209-29274228 Msa1015630:CDS 20.0%
!!! TTTTAATTATGTATGAGAGT+AGG - chr7_1:29274295-29274314 Msa1015630:intron 20.0%
!! TAGGAATAATAAACTACAAA+AGG + chr7_1:29274397-29274416 None:intergenic 20.0%
!!! GTTTTGTATAAAAAAAAACG+AGG - chr7_1:29274841-29274860 Msa1015630:intron 20.0%
!!! ATAGAGAATGAGATATTTTT+GGG + chr7_1:29275071-29275090 None:intergenic 20.0%
!!! AATAGAGAATGAGATATTTT+TGG + chr7_1:29275072-29275091 None:intergenic 20.0%
!! TTATTCATACTAAACATACA+TGG + chr7_1:29275657-29275676 None:intergenic 20.0%
!! TATGAATAACATGAAATTCT+AGG - chr7_1:29275668-29275687 Msa1015630:intron 20.0%
!! ATGAATAACATGAAATTCTA+GGG - chr7_1:29275669-29275688 Msa1015630:intron 20.0%
!! AAACTTATAAAACATGCATA+TGG + chr7_1:29275755-29275774 None:intergenic 20.0%
!! CTATACTATAAACTGAAATA+TGG + chr7_1:29274104-29274123 None:intergenic 20.0%
!! CATATTTCAGTTTATAGTAT+AGG - chr7_1:29274102-29274121 Msa1015630:intron 20.0%
!! TATTATAATTCTTGCATGTA+TGG - chr7_1:29274209-29274228 Msa1015630:CDS 20.0%
!!! TTTTAATTATGTATGAGAGT+AGG - chr7_1:29274295-29274314 Msa1015630:intron 20.0%
!! TAGGAATAATAAACTACAAA+AGG + chr7_1:29274397-29274416 None:intergenic 20.0%
!!! GTTTTGTATAAAAAAAAACG+AGG - chr7_1:29274841-29274860 Msa1015630:intron 20.0%
!!! ATAGAGAATGAGATATTTTT+GGG + chr7_1:29275071-29275090 None:intergenic 20.0%
!!! AATAGAGAATGAGATATTTT+TGG + chr7_1:29275072-29275091 None:intergenic 20.0%
!! TTATTCATACTAAACATACA+TGG + chr7_1:29275657-29275676 None:intergenic 20.0%
!! TATGAATAACATGAAATTCT+AGG - chr7_1:29275668-29275687 Msa1015630:intron 20.0%
!! ATGAATAACATGAAATTCTA+GGG - chr7_1:29275669-29275688 Msa1015630:intron 20.0%
!! AAACTTATAAAACATGCATA+TGG + chr7_1:29275755-29275774 None:intergenic 20.0%
! AGAATTCTTCAAATTCATTG+AGG + chr7_1:29274056-29274075 None:intergenic 25.0%
! AATTCTCCAAGAAGATATAT+TGG - chr7_1:29274070-29274089 Msa1015630:intron 25.0%
!! TTTGTCGACTATATATTCTT+AGG - chr7_1:29274172-29274191 Msa1015630:intron 25.0%
! AGGATGAAATATTCTATTAG+AGG - chr7_1:29274315-29274334 Msa1015630:intron 25.0%
! ATTCATGACAAGTAAGTTAA+TGG - chr7_1:29274928-29274947 Msa1015630:intron 25.0%
! TTCATGACAAGTAAGTTAAT+GGG - chr7_1:29274929-29274948 Msa1015630:intron 25.0%
!!! TTTTCTTTCTCTCTCTAAAA+TGG - chr7_1:29275090-29275109 Msa1015630:intron 25.0%
! AAGATGAATTCACTTATCAT+GGG + chr7_1:29275200-29275219 None:intergenic 25.0%
! TAAGATGAATTCACTTATCA+TGG + chr7_1:29275201-29275220 None:intergenic 25.0%
!! AAGAATGGATTCATAATCTA+GGG - chr7_1:29275286-29275305 Msa1015630:intron 25.0%
! TCTTGAAGAATATGTTTCAT+GGG - chr7_1:29275357-29275376 Msa1015630:intron 25.0%
! AATCAAGCAAGAAATAACTA+AGG - chr7_1:29275387-29275406 Msa1015630:intron 25.0%
! ATCAAGCAAGAAATAACTAA+GGG - chr7_1:29275388-29275407 Msa1015630:intron 25.0%
!! TTTGGAACATATTTGATCAT+TGG + chr7_1:29275778-29275797 None:intergenic 25.0%
!!! AATACCATTTTTAAGTGTTC+TGG - chr7_1:29275836-29275855 Msa1015630:CDS 25.0%
! AGAATTCTTCAAATTCATTG+AGG + chr7_1:29274056-29274075 None:intergenic 25.0%
! AATTCTCCAAGAAGATATAT+TGG - chr7_1:29274070-29274089 Msa1015630:intron 25.0%
!! TTTGTCGACTATATATTCTT+AGG - chr7_1:29274172-29274191 Msa1015630:intron 25.0%
! AGGATGAAATATTCTATTAG+AGG - chr7_1:29274315-29274334 Msa1015630:intron 25.0%
! ATTCATGACAAGTAAGTTAA+TGG - chr7_1:29274928-29274947 Msa1015630:intron 25.0%
! TTCATGACAAGTAAGTTAAT+GGG - chr7_1:29274929-29274948 Msa1015630:intron 25.0%
!!! TTTTCTTTCTCTCTCTAAAA+TGG - chr7_1:29275090-29275109 Msa1015630:intron 25.0%
! AAGATGAATTCACTTATCAT+GGG + chr7_1:29275200-29275219 None:intergenic 25.0%
! TAAGATGAATTCACTTATCA+TGG + chr7_1:29275201-29275220 None:intergenic 25.0%
!! AAGAATGGATTCATAATCTA+GGG - chr7_1:29275286-29275305 Msa1015630:intron 25.0%
! TCTTGAAGAATATGTTTCAT+GGG - chr7_1:29275357-29275376 Msa1015630:intron 25.0%
! AATCAAGCAAGAAATAACTA+AGG - chr7_1:29275387-29275406 Msa1015630:intron 25.0%
! ATCAAGCAAGAAATAACTAA+GGG - chr7_1:29275388-29275407 Msa1015630:intron 25.0%
!! TTTGGAACATATTTGATCAT+TGG + chr7_1:29275778-29275797 None:intergenic 25.0%
!!! AATACCATTTTTAAGTGTTC+TGG - chr7_1:29275836-29275855 Msa1015630:CDS 25.0%
CTTCACATTCAAACCATTTA+TGG + chr7_1:29273932-29273951 None:intergenic 30.0%
TGTTCTCCAATATATCTTCT+TGG + chr7_1:29274079-29274098 None:intergenic 30.0%
TAGTTTATTATTCCTAGCTC+CGG - chr7_1:29274401-29274420 Msa1015630:intron 30.0%
TGTCATGAATTTAATTCCTC+TGG + chr7_1:29274918-29274937 None:intergenic 30.0%
TATGACATGTCAGCTATTTA+CGG - chr7_1:29274960-29274979 Msa1015630:intron 30.0%
TTGAGTTAGAGAGATCAAAA+GGG + chr7_1:29275226-29275245 None:intergenic 30.0%
TCTAATGTTTCTTCCAAGAA+TGG - chr7_1:29275271-29275290 Msa1015630:intron 30.0%
CTAGATTATGAATCCATTCT+TGG + chr7_1:29275287-29275306 None:intergenic 30.0%
! CAAGAATGGATTCATAATCT+AGG - chr7_1:29275285-29275304 Msa1015630:intron 30.0%
CTCTTGAAGAATATGTTTCA+TGG - chr7_1:29275356-29275375 Msa1015630:intron 30.0%
TTCAAGCTAAAGTTTCTTCA+TGG - chr7_1:29275463-29275482 Msa1015630:intron 30.0%
ATTGATCAAAAGATTGCAAG+TGG - chr7_1:29275530-29275549 Msa1015630:intron 30.0%
TTGATCAAAAGATTGCAAGT+GGG - chr7_1:29275531-29275550 Msa1015630:intron 30.0%
TAGCATGCATGACATAAAAA+GGG + chr7_1:29275716-29275735 None:intergenic 30.0%
ATAGCATGCATGACATAAAA+AGG + chr7_1:29275717-29275736 None:intergenic 30.0%
CTTCACATTCAAACCATTTA+TGG + chr7_1:29273932-29273951 None:intergenic 30.0%
TGTTCTCCAATATATCTTCT+TGG + chr7_1:29274079-29274098 None:intergenic 30.0%
TAGTTTATTATTCCTAGCTC+CGG - chr7_1:29274401-29274420 Msa1015630:intron 30.0%
TGTCATGAATTTAATTCCTC+TGG + chr7_1:29274918-29274937 None:intergenic 30.0%
TATGACATGTCAGCTATTTA+CGG - chr7_1:29274960-29274979 Msa1015630:intron 30.0%
TTGAGTTAGAGAGATCAAAA+GGG + chr7_1:29275226-29275245 None:intergenic 30.0%
TCTAATGTTTCTTCCAAGAA+TGG - chr7_1:29275271-29275290 Msa1015630:intron 30.0%
CTAGATTATGAATCCATTCT+TGG + chr7_1:29275287-29275306 None:intergenic 30.0%
! CAAGAATGGATTCATAATCT+AGG - chr7_1:29275285-29275304 Msa1015630:intron 30.0%
CTCTTGAAGAATATGTTTCA+TGG - chr7_1:29275356-29275375 Msa1015630:intron 30.0%
TTCAAGCTAAAGTTTCTTCA+TGG - chr7_1:29275463-29275482 Msa1015630:intron 30.0%
ATTGATCAAAAGATTGCAAG+TGG - chr7_1:29275530-29275549 Msa1015630:intron 30.0%
TTGATCAAAAGATTGCAAGT+GGG - chr7_1:29275531-29275550 Msa1015630:intron 30.0%
TAGCATGCATGACATAAAAA+GGG + chr7_1:29275716-29275735 None:intergenic 30.0%
ATAGCATGCATGACATAAAA+AGG + chr7_1:29275717-29275736 None:intergenic 30.0%
CATTGAGGATTATGTACTTG+CGG + chr7_1:29274041-29274060 None:intergenic 35.0%
GACGTAATTAAAAGCTTACG+AGG - chr7_1:29274498-29274517 Msa1015630:intron 35.0%
ATGACATGTCAGCTATTTAC+GGG - chr7_1:29274961-29274980 Msa1015630:intron 35.0%
!!! AGTCGTTTTTAACACGTTCA+AGG - chr7_1:29274995-29275014 Msa1015630:intron 35.0%
! TTTTTAACACGTTCAAGGCA+AGG - chr7_1:29275000-29275019 Msa1015630:intron 35.0%
! TTTTAACACGTTCAAGGCAA+GGG - chr7_1:29275001-29275020 Msa1015630:intron 35.0%
! GCAAATTGGTAATTTCACGT+GGG - chr7_1:29275023-29275042 Msa1015630:intron 35.0%
AAGATTGGTGAAGATAAGAG+AGG + chr7_1:29275161-29275180 None:intergenic 35.0%
GGAAGGAGATTTAGAAAGAT+TGG + chr7_1:29275176-29275195 None:intergenic 35.0%
ATGAATTCACTTATCATGGG+AGG + chr7_1:29275197-29275216 None:intergenic 35.0%
CTTGAGTTAGAGAGATCAAA+AGG + chr7_1:29275227-29275246 None:intergenic 35.0%
! CTTTTGATCTCTCTAACTCA+AGG - chr7_1:29275225-29275244 Msa1015630:intron 35.0%
! TGGATTCATAATCTAGGGTT+TGG - chr7_1:29275291-29275310 Msa1015630:intron 35.0%
!! AAGGGTTTGCTTTGAAATCA+AGG - chr7_1:29275406-29275425 Msa1015630:intron 35.0%
!! AGGGTTTGCTTTGAAATCAA+GGG - chr7_1:29275407-29275426 Msa1015630:intron 35.0%
!! TTGCTTTGAAATCAAGGGTT+AGG - chr7_1:29275412-29275431 Msa1015630:intron 35.0%
!! TGCTTTGAAATCAAGGGTTA+GGG - chr7_1:29275413-29275432 Msa1015630:intron 35.0%
CTAAAGTTTCTTCATGGTCA+AGG - chr7_1:29275469-29275488 Msa1015630:intron 35.0%
TGATGCTTCAAGAACTTATG+AGG - chr7_1:29275586-29275605 Msa1015630:intron 35.0%
TAATCATAATCCCAAAGGGT+AGG + chr7_1:29275632-29275651 None:intergenic 35.0%
GGCATAATCATAATCCCAAA+GGG + chr7_1:29275636-29275655 None:intergenic 35.0%
TGGCATAATCATAATCCCAA+AGG + chr7_1:29275637-29275656 None:intergenic 35.0%
AGCATGCATGACATAAAAAG+GGG + chr7_1:29275715-29275734 None:intergenic 35.0%
!! ACACTTGGTTTGAGGTTTTT+GGG - chr7_1:29275808-29275827 Msa1015630:CDS 35.0%
CAGTCCAGAACACTTAAAAA+TGG + chr7_1:29275843-29275862 None:intergenic 35.0%
CATTGAGGATTATGTACTTG+CGG + chr7_1:29274041-29274060 None:intergenic 35.0%
GACGTAATTAAAAGCTTACG+AGG - chr7_1:29274498-29274517 Msa1015630:intron 35.0%
ATGACATGTCAGCTATTTAC+GGG - chr7_1:29274961-29274980 Msa1015630:intron 35.0%
!!! AGTCGTTTTTAACACGTTCA+AGG - chr7_1:29274995-29275014 Msa1015630:intron 35.0%
! TTTTTAACACGTTCAAGGCA+AGG - chr7_1:29275000-29275019 Msa1015630:intron 35.0%
! TTTTAACACGTTCAAGGCAA+GGG - chr7_1:29275001-29275020 Msa1015630:intron 35.0%
! GCAAATTGGTAATTTCACGT+GGG - chr7_1:29275023-29275042 Msa1015630:intron 35.0%
AAGATTGGTGAAGATAAGAG+AGG + chr7_1:29275161-29275180 None:intergenic 35.0%
GGAAGGAGATTTAGAAAGAT+TGG + chr7_1:29275176-29275195 None:intergenic 35.0%
ATGAATTCACTTATCATGGG+AGG + chr7_1:29275197-29275216 None:intergenic 35.0%
CTTGAGTTAGAGAGATCAAA+AGG + chr7_1:29275227-29275246 None:intergenic 35.0%
! CTTTTGATCTCTCTAACTCA+AGG - chr7_1:29275225-29275244 Msa1015630:intron 35.0%
! TGGATTCATAATCTAGGGTT+TGG - chr7_1:29275291-29275310 Msa1015630:intron 35.0%
!! AAGGGTTTGCTTTGAAATCA+AGG - chr7_1:29275406-29275425 Msa1015630:intron 35.0%
!! AGGGTTTGCTTTGAAATCAA+GGG - chr7_1:29275407-29275426 Msa1015630:intron 35.0%
!! TTGCTTTGAAATCAAGGGTT+AGG - chr7_1:29275412-29275431 Msa1015630:intron 35.0%
!! TGCTTTGAAATCAAGGGTTA+GGG - chr7_1:29275413-29275432 Msa1015630:intron 35.0%
CTAAAGTTTCTTCATGGTCA+AGG - chr7_1:29275469-29275488 Msa1015630:intron 35.0%
TGATGCTTCAAGAACTTATG+AGG - chr7_1:29275586-29275605 Msa1015630:intron 35.0%
TAATCATAATCCCAAAGGGT+AGG + chr7_1:29275632-29275651 None:intergenic 35.0%
GGCATAATCATAATCCCAAA+GGG + chr7_1:29275636-29275655 None:intergenic 35.0%
TGGCATAATCATAATCCCAA+AGG + chr7_1:29275637-29275656 None:intergenic 35.0%
AGCATGCATGACATAAAAAG+GGG + chr7_1:29275715-29275734 None:intergenic 35.0%
!! ACACTTGGTTTGAGGTTTTT+GGG - chr7_1:29275808-29275827 Msa1015630:CDS 35.0%
CAGTCCAGAACACTTAAAAA+TGG + chr7_1:29275843-29275862 None:intergenic 35.0%
! GTGCTTTGAACGTCCATAAA+TGG - chr7_1:29273916-29273935 Msa1015630:CDS 40.0%
AAAACACGTTGCGATAGATG+TGG - chr7_1:29273954-29273973 Msa1015630:CDS 40.0%
GTGGTTGACATGTCTTCATA+TGG + chr7_1:29274013-29274032 None:intergenic 40.0%
GAAGCATGAACGAACTTCAT+AGG - chr7_1:29274471-29274490 Msa1015630:intron 40.0%
AATATCTCGATACTGACAGG+CGG + chr7_1:29274881-29274900 None:intergenic 40.0%
GGTAATATCTCGATACTGAC+AGG + chr7_1:29274884-29274903 None:intergenic 40.0%
! GGCAAATTGGTAATTTCACG+TGG - chr7_1:29275022-29275041 Msa1015630:intron 40.0%
! ATTGGTAATTTCACGTGGGA+AGG - chr7_1:29275027-29275046 Msa1015630:intron 40.0%
GTGAAGATAAGAGAGGAAGA+GGG + chr7_1:29275154-29275173 None:intergenic 40.0%
ATTCACTTATCATGGGAGGA+AGG + chr7_1:29275193-29275212 None:intergenic 40.0%
TCTCTAACTCAAGGAAGCTT+GGG - chr7_1:29275234-29275253 Msa1015630:intron 40.0%
!!! TTGGTTTTGAGCAAGAAGCT+AGG - chr7_1:29275310-29275329 Msa1015630:intron 40.0%
!!! TGGTTTTGAGCAAGAAGCTA+GGG - chr7_1:29275311-29275330 Msa1015630:intron 40.0%
! AAGGGTTAGGGTTTGTTTGT+TGG - chr7_1:29275425-29275444 Msa1015630:intron 40.0%
! AAAAGCCAGGGTTTTTGCTT+AGG - chr7_1:29275556-29275575 Msa1015630:intron 40.0%
AAGGGTAGGAAAACTAGCTA+TGG + chr7_1:29275618-29275637 None:intergenic 40.0%
!!! TAGCTAGTTTTCCTACCCTT+TGG - chr7_1:29275618-29275637 Msa1015630:intron 40.0%
!!! AGCTAGTTTTCCTACCCTTT+GGG - chr7_1:29275619-29275638 Msa1015630:intron 40.0%
! CCAAGTGTCTCTATGTGTTT+TGG + chr7_1:29275796-29275815 None:intergenic 40.0%
CCAAAACACATAGAGACACT+TGG - chr7_1:29275793-29275812 Msa1015630:intron 40.0%
! ACATAGAGACACTTGGTTTG+AGG - chr7_1:29275800-29275819 Msa1015630:intron 40.0%
!! GACACTTGGTTTGAGGTTTT+TGG - chr7_1:29275807-29275826 Msa1015630:CDS 40.0%
! GTGCTTTGAACGTCCATAAA+TGG - chr7_1:29273916-29273935 Msa1015630:CDS 40.0%
AAAACACGTTGCGATAGATG+TGG - chr7_1:29273954-29273973 Msa1015630:CDS 40.0%
GTGGTTGACATGTCTTCATA+TGG + chr7_1:29274013-29274032 None:intergenic 40.0%
GAAGCATGAACGAACTTCAT+AGG - chr7_1:29274471-29274490 Msa1015630:intron 40.0%
AATATCTCGATACTGACAGG+CGG + chr7_1:29274881-29274900 None:intergenic 40.0%
GGTAATATCTCGATACTGAC+AGG + chr7_1:29274884-29274903 None:intergenic 40.0%
! GGCAAATTGGTAATTTCACG+TGG - chr7_1:29275022-29275041 Msa1015630:intron 40.0%
! ATTGGTAATTTCACGTGGGA+AGG - chr7_1:29275027-29275046 Msa1015630:intron 40.0%
GTGAAGATAAGAGAGGAAGA+GGG + chr7_1:29275154-29275173 None:intergenic 40.0%
ATTCACTTATCATGGGAGGA+AGG + chr7_1:29275193-29275212 None:intergenic 40.0%
TCTCTAACTCAAGGAAGCTT+GGG - chr7_1:29275234-29275253 Msa1015630:intron 40.0%
!!! TTGGTTTTGAGCAAGAAGCT+AGG - chr7_1:29275310-29275329 Msa1015630:intron 40.0%
!!! TGGTTTTGAGCAAGAAGCTA+GGG - chr7_1:29275311-29275330 Msa1015630:intron 40.0%
! AAGGGTTAGGGTTTGTTTGT+TGG - chr7_1:29275425-29275444 Msa1015630:intron 40.0%
! AAAAGCCAGGGTTTTTGCTT+AGG - chr7_1:29275556-29275575 Msa1015630:intron 40.0%
AAGGGTAGGAAAACTAGCTA+TGG + chr7_1:29275618-29275637 None:intergenic 40.0%
!!! TAGCTAGTTTTCCTACCCTT+TGG - chr7_1:29275618-29275637 Msa1015630:intron 40.0%
!!! AGCTAGTTTTCCTACCCTTT+GGG - chr7_1:29275619-29275638 Msa1015630:intron 40.0%
! CCAAGTGTCTCTATGTGTTT+TGG + chr7_1:29275796-29275815 None:intergenic 40.0%
CCAAAACACATAGAGACACT+TGG - chr7_1:29275793-29275812 Msa1015630:intron 40.0%
! ACATAGAGACACTTGGTTTG+AGG - chr7_1:29275800-29275819 Msa1015630:intron 40.0%
!! GACACTTGGTTTGAGGTTTT+TGG - chr7_1:29275807-29275826 Msa1015630:CDS 40.0%
TCCCAAGTCCTTCGAAAGTA+AGG - chr7_1:29273893-29273912 Msa1015630:CDS 45.0%
CCCTTACTTTCGAAGGACTT+GGG + chr7_1:29273897-29273916 None:intergenic 45.0%
CCCAAGTCCTTCGAAAGTAA+GGG - chr7_1:29273894-29273913 Msa1015630:CDS 45.0%
ACCCTTACTTTCGAAGGACT+TGG + chr7_1:29273898-29273917 None:intergenic 45.0%
! CAAAGCACCCTTACTTTCGA+AGG + chr7_1:29273904-29273923 None:intergenic 45.0%
TTATGTACTTGCGGCTTCTG+TGG + chr7_1:29274032-29274051 None:intergenic 45.0%
CCGAATACATCACACATGAC+CGG + chr7_1:29274423-29274442 None:intergenic 45.0%
CCGGTCATGTGTGATGTATT+CGG - chr7_1:29274420-29274439 Msa1015630:intron 45.0%
ACAAACCCTAGCAGACTCAA+CGG - chr7_1:29274533-29274552 Msa1015630:intron 45.0%
GAAAACCGTTGAGTCTGCTA+GGG + chr7_1:29274541-29274560 None:intergenic 45.0%
TGAAAACCGTTGAGTCTGCT+AGG + chr7_1:29274542-29274561 None:intergenic 45.0%
ATATCTCGATACTGACAGGC+GGG + chr7_1:29274880-29274899 None:intergenic 45.0%
GGTGAAGATAAGAGAGGAAG+AGG + chr7_1:29275155-29275174 None:intergenic 45.0%
CTCTCTAACTCAAGGAAGCT+TGG - chr7_1:29275233-29275252 Msa1015630:intron 45.0%
CAAGGAAGCTTGGGATTTGT+TGG - chr7_1:29275243-29275262 Msa1015630:intron 45.0%
AAGCTCCTAAGCAAAAACCC+TGG + chr7_1:29275564-29275583 None:intergenic 45.0%
TCCCAAGTCCTTCGAAAGTA+AGG - chr7_1:29273893-29273912 Msa1015630:CDS 45.0%
CCCTTACTTTCGAAGGACTT+GGG + chr7_1:29273897-29273916 None:intergenic 45.0%
CCCAAGTCCTTCGAAAGTAA+GGG - chr7_1:29273894-29273913 Msa1015630:CDS 45.0%
ACCCTTACTTTCGAAGGACT+TGG + chr7_1:29273898-29273917 None:intergenic 45.0%
! CAAAGCACCCTTACTTTCGA+AGG + chr7_1:29273904-29273923 None:intergenic 45.0%
TTATGTACTTGCGGCTTCTG+TGG + chr7_1:29274032-29274051 None:intergenic 45.0%
CCGAATACATCACACATGAC+CGG + chr7_1:29274423-29274442 None:intergenic 45.0%
CCGGTCATGTGTGATGTATT+CGG - chr7_1:29274420-29274439 Msa1015630:intron 45.0%
ACAAACCCTAGCAGACTCAA+CGG - chr7_1:29274533-29274552 Msa1015630:intron 45.0%
GAAAACCGTTGAGTCTGCTA+GGG + chr7_1:29274541-29274560 None:intergenic 45.0%
TGAAAACCGTTGAGTCTGCT+AGG + chr7_1:29274542-29274561 None:intergenic 45.0%
ATATCTCGATACTGACAGGC+GGG + chr7_1:29274880-29274899 None:intergenic 45.0%
GGTGAAGATAAGAGAGGAAG+AGG + chr7_1:29275155-29275174 None:intergenic 45.0%
CTCTCTAACTCAAGGAAGCT+TGG - chr7_1:29275233-29275252 Msa1015630:intron 45.0%
CAAGGAAGCTTGGGATTTGT+TGG - chr7_1:29275243-29275262 Msa1015630:intron 45.0%
AAGCTCCTAAGCAAAAACCC+TGG + chr7_1:29275564-29275583 None:intergenic 45.0%
!!! TTATTAATTGAATATTTTAA+TGG - chr7_1:29274602-29274621 Msa1015630:intron 5.0%
!!! TTATTAATTGAATATTTTAA+TGG - chr7_1:29274602-29274621 Msa1015630:intron 5.0%
TGGGACAATCAAAGCAAGCG+TGG + chr7_1:29273878-29273897 None:intergenic 50.0%
CGTTCAAGGCAAGGGCAAAT+TGG - chr7_1:29275009-29275028 Msa1015630:intron 50.0%
AGACTAGAGAGAGAAGGGAG+GGG + chr7_1:29275127-29275146 None:intergenic 50.0%
GAGACTAGAGAGAGAAGGGA+GGG + chr7_1:29275128-29275147 None:intergenic 50.0%
TGAGACTAGAGAGAGAAGGG+AGG + chr7_1:29275129-29275148 None:intergenic 50.0%
GCGTGAGACTAGAGAGAGAA+GGG + chr7_1:29275132-29275151 None:intergenic 50.0%
TGAGCAAGAAGCTAGGGCTT+TGG - chr7_1:29275317-29275336 Msa1015630:intron 50.0%
GAGCAAGAAGCTAGGGCTTT+GGG - chr7_1:29275318-29275337 Msa1015630:intron 50.0%
!! GAAGCTAGGGCTTTGGGTTA+TGG - chr7_1:29275324-29275343 Msa1015630:intron 50.0%
!! AGGGCTTTGGGTTATGGTTG+TGG - chr7_1:29275330-29275349 Msa1015630:intron 50.0%
!! GGGCTTTGGGTTATGGTTGT+GGG - chr7_1:29275331-29275350 Msa1015630:intron 50.0%
TTGCAAGTGGGACAAAAGCC+AGG - chr7_1:29275543-29275562 Msa1015630:intron 50.0%
TGCAAGTGGGACAAAAGCCA+GGG - chr7_1:29275544-29275563 Msa1015630:intron 50.0%
TGGGACAATCAAAGCAAGCG+TGG + chr7_1:29273878-29273897 None:intergenic 50.0%
CGTTCAAGGCAAGGGCAAAT+TGG - chr7_1:29275009-29275028 Msa1015630:intron 50.0%
AGACTAGAGAGAGAAGGGAG+GGG + chr7_1:29275127-29275146 None:intergenic 50.0%
GAGACTAGAGAGAGAAGGGA+GGG + chr7_1:29275128-29275147 None:intergenic 50.0%
TGAGACTAGAGAGAGAAGGG+AGG + chr7_1:29275129-29275148 None:intergenic 50.0%
GCGTGAGACTAGAGAGAGAA+GGG + chr7_1:29275132-29275151 None:intergenic 50.0%
TGAGCAAGAAGCTAGGGCTT+TGG - chr7_1:29275317-29275336 Msa1015630:intron 50.0%
GAGCAAGAAGCTAGGGCTTT+GGG - chr7_1:29275318-29275337 Msa1015630:intron 50.0%
!! GAAGCTAGGGCTTTGGGTTA+TGG - chr7_1:29275324-29275343 Msa1015630:intron 50.0%
!! AGGGCTTTGGGTTATGGTTG+TGG - chr7_1:29275330-29275349 Msa1015630:intron 50.0%
!! GGGCTTTGGGTTATGGTTGT+GGG - chr7_1:29275331-29275350 Msa1015630:intron 50.0%
TTGCAAGTGGGACAAAAGCC+AGG - chr7_1:29275543-29275562 Msa1015630:intron 50.0%
TGCAAGTGGGACAAAAGCCA+GGG - chr7_1:29275544-29275563 Msa1015630:intron 50.0%
CATCACACATGACCGGAGCT+AGG + chr7_1:29274416-29274435 None:intergenic 55.0%
TTACCAGTCGATCGTGCCAG+AGG - chr7_1:29274899-29274918 Msa1015630:intron 55.0%
ATTCCTCTGGCACGATCGAC+TGG + chr7_1:29274905-29274924 None:intergenic 55.0%
GGCGTGAGACTAGAGAGAGA+AGG + chr7_1:29275133-29275152 None:intergenic 55.0%
TGGACTGTCCTAACTCGCCA+CGG - chr7_1:29275856-29275875 Msa1015630:CDS 55.0%
GGCGAGCTAGAACTCCGAAA+GGG - chr7_1:29275897-29275916 Msa1015630:CDS 55.0%
GCGAGCTAGAACTCCGAAAG+GGG - chr7_1:29275898-29275917 Msa1015630:CDS 55.0%
CGAGCTAGAACTCCGAAAGG+GGG - chr7_1:29275899-29275918 Msa1015630:CDS 55.0%
GAGCTAGAACTCCGAAAGGG+GGG - chr7_1:29275900-29275919 Msa1015630:CDS 55.0%
CATCACACATGACCGGAGCT+AGG + chr7_1:29274416-29274435 None:intergenic 55.0%
TTACCAGTCGATCGTGCCAG+AGG - chr7_1:29274899-29274918 Msa1015630:intron 55.0%
ATTCCTCTGGCACGATCGAC+TGG + chr7_1:29274905-29274924 None:intergenic 55.0%
GGCGTGAGACTAGAGAGAGA+AGG + chr7_1:29275133-29275152 None:intergenic 55.0%
TGGACTGTCCTAACTCGCCA+CGG - chr7_1:29275856-29275875 Msa1015630:CDS 55.0%
GGCGAGCTAGAACTCCGAAA+GGG - chr7_1:29275897-29275916 Msa1015630:CDS 55.0%
GCGAGCTAGAACTCCGAAAG+GGG - chr7_1:29275898-29275917 Msa1015630:CDS 55.0%
CGAGCTAGAACTCCGAAAGG+GGG - chr7_1:29275899-29275918 Msa1015630:CDS 55.0%
GAGCTAGAACTCCGAAAGGG+GGG - chr7_1:29275900-29275919 Msa1015630:CDS 55.0%
ATAGCTCGCCGTGGCGAGTT+AGG + chr7_1:29275867-29275886 None:intergenic 60.0%
TGGCGAGTAATAGCTCGCCG+TGG + chr7_1:29275876-29275895 None:intergenic 60.0%
CGGCGAGCTATTACTCGCCA+CGG - chr7_1:29275876-29275895 Msa1015630:CDS 60.0%
!! TTCGGAGTTCTAGCTCGCCG+TGG + chr7_1:29275896-29275915 None:intergenic 60.0%
CGGCGAGCTAGAACTCCGAA+AGG - chr7_1:29275896-29275915 Msa1015630:CDS 60.0%
ATAGCTCGCCGTGGCGAGTT+AGG + chr7_1:29275867-29275886 None:intergenic 60.0%
TGGCGAGTAATAGCTCGCCG+TGG + chr7_1:29275876-29275895 None:intergenic 60.0%
CGGCGAGCTATTACTCGCCA+CGG - chr7_1:29275876-29275895 Msa1015630:CDS 60.0%
!! TTCGGAGTTCTAGCTCGCCG+TGG + chr7_1:29275896-29275915 None:intergenic 60.0%
CGGCGAGCTAGAACTCCGAA+AGG - chr7_1:29275896-29275915 Msa1015630:CDS 60.0%
TAGCTCGCCGTGGCGAGTTG+GGG + chr7_1:29275936-29275955 None:intergenic 65.0%
GTAGCTCGCCGTGGCGAGTT+GGG + chr7_1:29275937-29275956 None:intergenic 65.0%
TAGCTCGCCGTGGCGAGTTG+GGG + chr7_1:29275936-29275955 None:intergenic 65.0%
GTAGCTCGCCGTGGCGAGTT+GGG + chr7_1:29275937-29275956 None:intergenic 65.0%
GGCGAGCAGGACCCCCCTTT+CGG + chr7_1:29275914-29275933 None:intergenic 70.0%
TGCTCGCCCCCAACTCGCCA+CGG - chr7_1:29275926-29275945 Msa1015630:CDS 70.0%
! AGCTCGCCGTGGCGAGTTGG+GGG + chr7_1:29275935-29275954 None:intergenic 70.0%
GGTAGCTCGCCGTGGCGAGT+TGG + chr7_1:29275938-29275957 None:intergenic 70.0%
AGGCGAGTGGTAGCTCGCCG+TGG + chr7_1:29275946-29275965 None:intergenic 70.0%
GGCGAGCAGGACCCCCCTTT+CGG + chr7_1:29275914-29275933 None:intergenic 70.0%
TGCTCGCCCCCAACTCGCCA+CGG - chr7_1:29275926-29275945 Msa1015630:CDS 70.0%
! AGCTCGCCGTGGCGAGTTGG+GGG + chr7_1:29275935-29275954 None:intergenic 70.0%
GGTAGCTCGCCGTGGCGAGT+TGG + chr7_1:29275938-29275957 None:intergenic 70.0%
AGGCGAGTGGTAGCTCGCCG+TGG + chr7_1:29275946-29275965 None:intergenic 70.0%
! GTGGCGAGTTGGGGGCGAGC+AGG + chr7_1:29275927-29275946 None:intergenic 75.0%
! GTGGCGAGTTGGGGGCGAGC+AGG + chr7_1:29275927-29275946 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 29273870 29275974 29273870 ID=Msa1015630;Name=Msa1015630
chr7_1 mRNA 29273870 29275974 29273870 ID=Msa1015630-mRNA-1;Parent=Msa1015630;Name=Msa1015630-mRNA-1;_AED=0.70;_eAED=0.70;_QI=0|0|0|0.33|1|1|3|0|140
chr7_1 exon 29275801 29275974 29275801 ID=Msa1015630-mRNA-1:exon:6038;Parent=Msa1015630-mRNA-1
chr7_1 exon 29274187 29274266 29274187 ID=Msa1015630-mRNA-1:exon:6037;Parent=Msa1015630-mRNA-1
chr7_1 exon 29273870 29274038 29273870 ID=Msa1015630-mRNA-1:exon:6036;Parent=Msa1015630-mRNA-1
chr7_1 CDS 29275801 29275974 29275801 ID=Msa1015630-mRNA-1:cds;Parent=Msa1015630-mRNA-1
chr7_1 CDS 29274187 29274266 29274187 ID=Msa1015630-mRNA-1:cds;Parent=Msa1015630-mRNA-1
chr7_1 CDS 29273870 29274038 29273870 ID=Msa1015630-mRNA-1:cds;Parent=Msa1015630-mRNA-1
Gene Sequence

>Msa1015630

ATGTTCCACGCTTGCTTTGATTGTCCCAAGTCCTTCGAAAGTAAGGGTGCTTTGAACGTCCATAAATGGTTTGAATGTGAAGCTAAAACACGTTGCGATAGATGTGGTAAATTATGCTCATCTATTCTTTCTTGTTCTAACCATATGAAGACATGTCAACCACAGAAGCCGCAAGAGCTTATTGATGCTTCAAGAACTTATGAGGTGAGTTCCATAGCTAGTTTTCCTACCCTTTGGGATTATGATTATGCCATAGACACTTGGTTTGAGGTTTTTGGGTCAAAAATACCATTTTTAAGTGTTCTGGACTGTCCTAACTCGCCACGGCGAGCTATTACTCGCCACGGCGAGCTAGAACTCCGAAAGGGGGGTCCTGCTCGCCCCCAACTCGCCACGGCGAGCTACCACTCGCCTCCCCAGTGA

Protein sequence

>Msa1015630

MFHACFDCPKSFESKGALNVHKWFECEAKTRCDRCGKLCSSILSCSNHMKTCQPQKPQELIDASRTYEVSSIASFPTLWDYDYAIDTWFEVFGSKIPFLSVLDCPNSPRRAITRHGELELRKGGPARPQLATASYHSPPQ*