Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1015630 | KEH17097.1 | 67.606 | 71 | 23 | 0 | 1 | 71 | 1 | 71 | 3.33e-27 | 108 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1015630 | G7ZUP9 | 67.606 | 71 | 23 | 0 | 1 | 71 | 1 | 71 | 1.59e-27 | 108 |
Gene ID | Type | Classification |
---|---|---|
Msa1015630 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 37 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCACATTCAAACCATTTA+TGG | 0.079557 | 7_1:+29275893 | None:intergenic |
GTGCTTTGAACGTCCATAAA+TGG | 0.278461 | 7_1:-29275906 | Msa1015630:CDS |
GTAGCTCGCCGTGGCGAGTT+GGG | 0.311678 | 7_1:+29273888 | None:intergenic |
TCCCAAGTCCTTCGAAAGTA+AGG | 0.396127 | 7_1:-29275929 | Msa1015630:CDS |
GGTAGCTCGCCGTGGCGAGT+TGG | 0.400774 | 7_1:+29273887 | None:intergenic |
ATAGCTCGCCGTGGCGAGTT+AGG | 0.406540 | 7_1:+29273958 | None:intergenic |
TGATGCTTCAAGAACTTATG+AGG | 0.422461 | 7_1:-29274236 | Msa1015630:CDS |
GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+29275812 | None:intergenic |
ACCCTTACTTTCGAAGGACT+TGG | 0.470340 | 7_1:+29275927 | None:intergenic |
TAGCTCGCCGTGGCGAGTTG+GGG | 0.471596 | 7_1:+29273889 | None:intergenic |
ACATAGAGACACTTGGTTTG+AGG | 0.476543 | 7_1:-29274022 | Msa1015630:intron |
CCCTTACTTTCGAAGGACTT+GGG | 0.477508 | 7_1:+29275928 | None:intergenic |
CCTAGGCGAGTGATTTCACT+GGG | 0.489964 | 7_1:+29273855 | None:intergenic |
CCAAAACACATAGAGACACT+TGG | 0.516328 | 7_1:-29274029 | Msa1015630:intron |
CAAAGCACCCTTACTTTCGA+AGG | 0.524991 | 7_1:+29275921 | None:intergenic |
GGCGAGCTAGAACTCCGAAA+GGG | 0.533637 | 7_1:-29273925 | Msa1015630:CDS |
AAGGGTAGGAAAACTAGCTA+TGG | 0.543140 | 7_1:+29274207 | None:intergenic |
GGCATAATCATAATCCCAAA+GGG | 0.548085 | 7_1:+29274189 | None:intergenic |
AGCTCGCCGTGGCGAGTTGG+GGG | 0.551965 | 7_1:+29273890 | None:intergenic |
TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+29275793 | None:intergenic |
TGGCATAATCATAATCCCAA+AGG | 0.590228 | 7_1:+29274188 | None:intergenic |
CGGCGAGCTAGAACTCCGAA+AGG | 0.592524 | 7_1:-29273926 | Msa1015630:CDS |
GGCGAGTGATTTCACTGGGG+AGG | 0.601043 | 7_1:+29273859 | None:intergenic |
TAATCATAATCCCAAAGGGT+AGG | 0.601208 | 7_1:+29274193 | None:intergenic |
CGAGCTAGAACTCCGAAAGG+GGG | 0.608349 | 7_1:-29273923 | Msa1015630:CDS |
CCCAAGTCCTTCGAAAGTAA+GGG | 0.608380 | 7_1:-29275928 | Msa1015630:CDS |
GCGAGCTAGAACTCCGAAAG+GGG | 0.613904 | 7_1:-29273924 | Msa1015630:CDS |
CGGCGAGCTATTACTCGCCA+CGG | 0.624637 | 7_1:-29273946 | Msa1015630:CDS |
GATTTCACTGGGGAGGCGAG+TGG | 0.634717 | 7_1:+29273866 | None:intergenic |
TTCGGAGTTCTAGCTCGCCG+TGG | 0.653107 | 7_1:+29273929 | None:intergenic |
GAGCTAGAACTCCGAAAGGG+GGG | 0.654682 | 7_1:-29273922 | Msa1015630:CDS |
AGGCGAGTGGTAGCTCGCCG+TGG | 0.664970 | 7_1:+29273879 | None:intergenic |
TGGGACAATCAAAGCAAGCG+TGG | 0.684170 | 7_1:+29275947 | None:intergenic |
AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-29275868 | Msa1015630:CDS |
TGGACTGTCCTAACTCGCCA+CGG | 0.690155 | 7_1:-29273966 | Msa1015630:CDS |
TGGCGAGTAATAGCTCGCCG+TGG | 0.707249 | 7_1:+29273949 | None:intergenic |
CTAGGCGAGTGATTTCACTG+GGG | 0.835939 | 7_1:+29273856 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAATTTTAGTTAAATTTCT+TGG | - | chr7_1:29274253-29274272 | Msa1015630:intron | 10.0% |
!! | ATAAAATTATAAACTCAAAA+TGG | - | chr7_1:29274570-29274589 | Msa1015630:intron | 10.0% |
!!! | TTTCTATTTAGAATATTTTT+AGG | - | chr7_1:29274749-29274768 | Msa1015630:intron | 10.0% |
!!! | TTAATTTTAGTTAAATTTCT+TGG | - | chr7_1:29274253-29274272 | Msa1015630:intron | 10.0% |
!! | ATAAAATTATAAACTCAAAA+TGG | - | chr7_1:29274570-29274589 | Msa1015630:intron | 10.0% |
!!! | TTTCTATTTAGAATATTTTT+AGG | - | chr7_1:29274749-29274768 | Msa1015630:intron | 10.0% |
!!! | TATGAGTTTTTTTTTCAAAA+GGG | + | chr7_1:29274683-29274702 | None:intergenic | 15.0% |
!!! | TTATGAGTTTTTTTTTCAAA+AGG | + | chr7_1:29274684-29274703 | None:intergenic | 15.0% |
!!! | TCTTTATTTATTTTCAATTG+AGG | - | chr7_1:29274778-29274797 | Msa1015630:intron | 15.0% |
!!! | CTTTATTTATTTTCAATTGA+GGG | - | chr7_1:29274779-29274798 | Msa1015630:intron | 15.0% |
!!! | TTTTGTATAAAAAAAAACGA+GGG | - | chr7_1:29274842-29274861 | Msa1015630:intron | 15.0% |
!!! | TATGAGTTTTTTTTTCAAAA+GGG | + | chr7_1:29274683-29274702 | None:intergenic | 15.0% |
!!! | TTATGAGTTTTTTTTTCAAA+AGG | + | chr7_1:29274684-29274703 | None:intergenic | 15.0% |
!!! | TCTTTATTTATTTTCAATTG+AGG | - | chr7_1:29274778-29274797 | Msa1015630:intron | 15.0% |
!!! | CTTTATTTATTTTCAATTGA+GGG | - | chr7_1:29274779-29274798 | Msa1015630:intron | 15.0% |
!!! | TTTTGTATAAAAAAAAACGA+GGG | - | chr7_1:29274842-29274861 | Msa1015630:intron | 15.0% |
!! | CTATACTATAAACTGAAATA+TGG | + | chr7_1:29274104-29274123 | None:intergenic | 20.0% |
!! | CATATTTCAGTTTATAGTAT+AGG | - | chr7_1:29274102-29274121 | Msa1015630:intron | 20.0% |
!! | TATTATAATTCTTGCATGTA+TGG | - | chr7_1:29274209-29274228 | Msa1015630:CDS | 20.0% |
!!! | TTTTAATTATGTATGAGAGT+AGG | - | chr7_1:29274295-29274314 | Msa1015630:intron | 20.0% |
!! | TAGGAATAATAAACTACAAA+AGG | + | chr7_1:29274397-29274416 | None:intergenic | 20.0% |
!!! | GTTTTGTATAAAAAAAAACG+AGG | - | chr7_1:29274841-29274860 | Msa1015630:intron | 20.0% |
!!! | ATAGAGAATGAGATATTTTT+GGG | + | chr7_1:29275071-29275090 | None:intergenic | 20.0% |
!!! | AATAGAGAATGAGATATTTT+TGG | + | chr7_1:29275072-29275091 | None:intergenic | 20.0% |
!! | TTATTCATACTAAACATACA+TGG | + | chr7_1:29275657-29275676 | None:intergenic | 20.0% |
!! | TATGAATAACATGAAATTCT+AGG | - | chr7_1:29275668-29275687 | Msa1015630:intron | 20.0% |
!! | ATGAATAACATGAAATTCTA+GGG | - | chr7_1:29275669-29275688 | Msa1015630:intron | 20.0% |
!! | AAACTTATAAAACATGCATA+TGG | + | chr7_1:29275755-29275774 | None:intergenic | 20.0% |
!! | CTATACTATAAACTGAAATA+TGG | + | chr7_1:29274104-29274123 | None:intergenic | 20.0% |
!! | CATATTTCAGTTTATAGTAT+AGG | - | chr7_1:29274102-29274121 | Msa1015630:intron | 20.0% |
!! | TATTATAATTCTTGCATGTA+TGG | - | chr7_1:29274209-29274228 | Msa1015630:CDS | 20.0% |
!!! | TTTTAATTATGTATGAGAGT+AGG | - | chr7_1:29274295-29274314 | Msa1015630:intron | 20.0% |
!! | TAGGAATAATAAACTACAAA+AGG | + | chr7_1:29274397-29274416 | None:intergenic | 20.0% |
!!! | GTTTTGTATAAAAAAAAACG+AGG | - | chr7_1:29274841-29274860 | Msa1015630:intron | 20.0% |
!!! | ATAGAGAATGAGATATTTTT+GGG | + | chr7_1:29275071-29275090 | None:intergenic | 20.0% |
!!! | AATAGAGAATGAGATATTTT+TGG | + | chr7_1:29275072-29275091 | None:intergenic | 20.0% |
!! | TTATTCATACTAAACATACA+TGG | + | chr7_1:29275657-29275676 | None:intergenic | 20.0% |
!! | TATGAATAACATGAAATTCT+AGG | - | chr7_1:29275668-29275687 | Msa1015630:intron | 20.0% |
!! | ATGAATAACATGAAATTCTA+GGG | - | chr7_1:29275669-29275688 | Msa1015630:intron | 20.0% |
!! | AAACTTATAAAACATGCATA+TGG | + | chr7_1:29275755-29275774 | None:intergenic | 20.0% |
! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:29274056-29274075 | None:intergenic | 25.0% |
! | AATTCTCCAAGAAGATATAT+TGG | - | chr7_1:29274070-29274089 | Msa1015630:intron | 25.0% |
!! | TTTGTCGACTATATATTCTT+AGG | - | chr7_1:29274172-29274191 | Msa1015630:intron | 25.0% |
! | AGGATGAAATATTCTATTAG+AGG | - | chr7_1:29274315-29274334 | Msa1015630:intron | 25.0% |
! | ATTCATGACAAGTAAGTTAA+TGG | - | chr7_1:29274928-29274947 | Msa1015630:intron | 25.0% |
! | TTCATGACAAGTAAGTTAAT+GGG | - | chr7_1:29274929-29274948 | Msa1015630:intron | 25.0% |
!!! | TTTTCTTTCTCTCTCTAAAA+TGG | - | chr7_1:29275090-29275109 | Msa1015630:intron | 25.0% |
! | AAGATGAATTCACTTATCAT+GGG | + | chr7_1:29275200-29275219 | None:intergenic | 25.0% |
! | TAAGATGAATTCACTTATCA+TGG | + | chr7_1:29275201-29275220 | None:intergenic | 25.0% |
!! | AAGAATGGATTCATAATCTA+GGG | - | chr7_1:29275286-29275305 | Msa1015630:intron | 25.0% |
! | TCTTGAAGAATATGTTTCAT+GGG | - | chr7_1:29275357-29275376 | Msa1015630:intron | 25.0% |
! | AATCAAGCAAGAAATAACTA+AGG | - | chr7_1:29275387-29275406 | Msa1015630:intron | 25.0% |
! | ATCAAGCAAGAAATAACTAA+GGG | - | chr7_1:29275388-29275407 | Msa1015630:intron | 25.0% |
!! | TTTGGAACATATTTGATCAT+TGG | + | chr7_1:29275778-29275797 | None:intergenic | 25.0% |
!!! | AATACCATTTTTAAGTGTTC+TGG | - | chr7_1:29275836-29275855 | Msa1015630:CDS | 25.0% |
! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:29274056-29274075 | None:intergenic | 25.0% |
! | AATTCTCCAAGAAGATATAT+TGG | - | chr7_1:29274070-29274089 | Msa1015630:intron | 25.0% |
!! | TTTGTCGACTATATATTCTT+AGG | - | chr7_1:29274172-29274191 | Msa1015630:intron | 25.0% |
! | AGGATGAAATATTCTATTAG+AGG | - | chr7_1:29274315-29274334 | Msa1015630:intron | 25.0% |
! | ATTCATGACAAGTAAGTTAA+TGG | - | chr7_1:29274928-29274947 | Msa1015630:intron | 25.0% |
! | TTCATGACAAGTAAGTTAAT+GGG | - | chr7_1:29274929-29274948 | Msa1015630:intron | 25.0% |
!!! | TTTTCTTTCTCTCTCTAAAA+TGG | - | chr7_1:29275090-29275109 | Msa1015630:intron | 25.0% |
! | AAGATGAATTCACTTATCAT+GGG | + | chr7_1:29275200-29275219 | None:intergenic | 25.0% |
! | TAAGATGAATTCACTTATCA+TGG | + | chr7_1:29275201-29275220 | None:intergenic | 25.0% |
!! | AAGAATGGATTCATAATCTA+GGG | - | chr7_1:29275286-29275305 | Msa1015630:intron | 25.0% |
! | TCTTGAAGAATATGTTTCAT+GGG | - | chr7_1:29275357-29275376 | Msa1015630:intron | 25.0% |
! | AATCAAGCAAGAAATAACTA+AGG | - | chr7_1:29275387-29275406 | Msa1015630:intron | 25.0% |
! | ATCAAGCAAGAAATAACTAA+GGG | - | chr7_1:29275388-29275407 | Msa1015630:intron | 25.0% |
!! | TTTGGAACATATTTGATCAT+TGG | + | chr7_1:29275778-29275797 | None:intergenic | 25.0% |
!!! | AATACCATTTTTAAGTGTTC+TGG | - | chr7_1:29275836-29275855 | Msa1015630:CDS | 25.0% |
CTTCACATTCAAACCATTTA+TGG | + | chr7_1:29273932-29273951 | None:intergenic | 30.0% | |
TGTTCTCCAATATATCTTCT+TGG | + | chr7_1:29274079-29274098 | None:intergenic | 30.0% | |
TAGTTTATTATTCCTAGCTC+CGG | - | chr7_1:29274401-29274420 | Msa1015630:intron | 30.0% | |
TGTCATGAATTTAATTCCTC+TGG | + | chr7_1:29274918-29274937 | None:intergenic | 30.0% | |
TATGACATGTCAGCTATTTA+CGG | - | chr7_1:29274960-29274979 | Msa1015630:intron | 30.0% | |
TTGAGTTAGAGAGATCAAAA+GGG | + | chr7_1:29275226-29275245 | None:intergenic | 30.0% | |
TCTAATGTTTCTTCCAAGAA+TGG | - | chr7_1:29275271-29275290 | Msa1015630:intron | 30.0% | |
CTAGATTATGAATCCATTCT+TGG | + | chr7_1:29275287-29275306 | None:intergenic | 30.0% | |
! | CAAGAATGGATTCATAATCT+AGG | - | chr7_1:29275285-29275304 | Msa1015630:intron | 30.0% |
CTCTTGAAGAATATGTTTCA+TGG | - | chr7_1:29275356-29275375 | Msa1015630:intron | 30.0% | |
TTCAAGCTAAAGTTTCTTCA+TGG | - | chr7_1:29275463-29275482 | Msa1015630:intron | 30.0% | |
ATTGATCAAAAGATTGCAAG+TGG | - | chr7_1:29275530-29275549 | Msa1015630:intron | 30.0% | |
TTGATCAAAAGATTGCAAGT+GGG | - | chr7_1:29275531-29275550 | Msa1015630:intron | 30.0% | |
TAGCATGCATGACATAAAAA+GGG | + | chr7_1:29275716-29275735 | None:intergenic | 30.0% | |
ATAGCATGCATGACATAAAA+AGG | + | chr7_1:29275717-29275736 | None:intergenic | 30.0% | |
CTTCACATTCAAACCATTTA+TGG | + | chr7_1:29273932-29273951 | None:intergenic | 30.0% | |
TGTTCTCCAATATATCTTCT+TGG | + | chr7_1:29274079-29274098 | None:intergenic | 30.0% | |
TAGTTTATTATTCCTAGCTC+CGG | - | chr7_1:29274401-29274420 | Msa1015630:intron | 30.0% | |
TGTCATGAATTTAATTCCTC+TGG | + | chr7_1:29274918-29274937 | None:intergenic | 30.0% | |
TATGACATGTCAGCTATTTA+CGG | - | chr7_1:29274960-29274979 | Msa1015630:intron | 30.0% | |
TTGAGTTAGAGAGATCAAAA+GGG | + | chr7_1:29275226-29275245 | None:intergenic | 30.0% | |
TCTAATGTTTCTTCCAAGAA+TGG | - | chr7_1:29275271-29275290 | Msa1015630:intron | 30.0% | |
CTAGATTATGAATCCATTCT+TGG | + | chr7_1:29275287-29275306 | None:intergenic | 30.0% | |
! | CAAGAATGGATTCATAATCT+AGG | - | chr7_1:29275285-29275304 | Msa1015630:intron | 30.0% |
CTCTTGAAGAATATGTTTCA+TGG | - | chr7_1:29275356-29275375 | Msa1015630:intron | 30.0% | |
TTCAAGCTAAAGTTTCTTCA+TGG | - | chr7_1:29275463-29275482 | Msa1015630:intron | 30.0% | |
ATTGATCAAAAGATTGCAAG+TGG | - | chr7_1:29275530-29275549 | Msa1015630:intron | 30.0% | |
TTGATCAAAAGATTGCAAGT+GGG | - | chr7_1:29275531-29275550 | Msa1015630:intron | 30.0% | |
TAGCATGCATGACATAAAAA+GGG | + | chr7_1:29275716-29275735 | None:intergenic | 30.0% | |
ATAGCATGCATGACATAAAA+AGG | + | chr7_1:29275717-29275736 | None:intergenic | 30.0% | |
CATTGAGGATTATGTACTTG+CGG | + | chr7_1:29274041-29274060 | None:intergenic | 35.0% | |
GACGTAATTAAAAGCTTACG+AGG | - | chr7_1:29274498-29274517 | Msa1015630:intron | 35.0% | |
ATGACATGTCAGCTATTTAC+GGG | - | chr7_1:29274961-29274980 | Msa1015630:intron | 35.0% | |
!!! | AGTCGTTTTTAACACGTTCA+AGG | - | chr7_1:29274995-29275014 | Msa1015630:intron | 35.0% |
! | TTTTTAACACGTTCAAGGCA+AGG | - | chr7_1:29275000-29275019 | Msa1015630:intron | 35.0% |
! | TTTTAACACGTTCAAGGCAA+GGG | - | chr7_1:29275001-29275020 | Msa1015630:intron | 35.0% |
! | GCAAATTGGTAATTTCACGT+GGG | - | chr7_1:29275023-29275042 | Msa1015630:intron | 35.0% |
AAGATTGGTGAAGATAAGAG+AGG | + | chr7_1:29275161-29275180 | None:intergenic | 35.0% | |
GGAAGGAGATTTAGAAAGAT+TGG | + | chr7_1:29275176-29275195 | None:intergenic | 35.0% | |
ATGAATTCACTTATCATGGG+AGG | + | chr7_1:29275197-29275216 | None:intergenic | 35.0% | |
CTTGAGTTAGAGAGATCAAA+AGG | + | chr7_1:29275227-29275246 | None:intergenic | 35.0% | |
! | CTTTTGATCTCTCTAACTCA+AGG | - | chr7_1:29275225-29275244 | Msa1015630:intron | 35.0% |
! | TGGATTCATAATCTAGGGTT+TGG | - | chr7_1:29275291-29275310 | Msa1015630:intron | 35.0% |
!! | AAGGGTTTGCTTTGAAATCA+AGG | - | chr7_1:29275406-29275425 | Msa1015630:intron | 35.0% |
!! | AGGGTTTGCTTTGAAATCAA+GGG | - | chr7_1:29275407-29275426 | Msa1015630:intron | 35.0% |
!! | TTGCTTTGAAATCAAGGGTT+AGG | - | chr7_1:29275412-29275431 | Msa1015630:intron | 35.0% |
!! | TGCTTTGAAATCAAGGGTTA+GGG | - | chr7_1:29275413-29275432 | Msa1015630:intron | 35.0% |
CTAAAGTTTCTTCATGGTCA+AGG | - | chr7_1:29275469-29275488 | Msa1015630:intron | 35.0% | |
TGATGCTTCAAGAACTTATG+AGG | - | chr7_1:29275586-29275605 | Msa1015630:intron | 35.0% | |
TAATCATAATCCCAAAGGGT+AGG | + | chr7_1:29275632-29275651 | None:intergenic | 35.0% | |
GGCATAATCATAATCCCAAA+GGG | + | chr7_1:29275636-29275655 | None:intergenic | 35.0% | |
TGGCATAATCATAATCCCAA+AGG | + | chr7_1:29275637-29275656 | None:intergenic | 35.0% | |
AGCATGCATGACATAAAAAG+GGG | + | chr7_1:29275715-29275734 | None:intergenic | 35.0% | |
!! | ACACTTGGTTTGAGGTTTTT+GGG | - | chr7_1:29275808-29275827 | Msa1015630:CDS | 35.0% |
CAGTCCAGAACACTTAAAAA+TGG | + | chr7_1:29275843-29275862 | None:intergenic | 35.0% | |
CATTGAGGATTATGTACTTG+CGG | + | chr7_1:29274041-29274060 | None:intergenic | 35.0% | |
GACGTAATTAAAAGCTTACG+AGG | - | chr7_1:29274498-29274517 | Msa1015630:intron | 35.0% | |
ATGACATGTCAGCTATTTAC+GGG | - | chr7_1:29274961-29274980 | Msa1015630:intron | 35.0% | |
!!! | AGTCGTTTTTAACACGTTCA+AGG | - | chr7_1:29274995-29275014 | Msa1015630:intron | 35.0% |
! | TTTTTAACACGTTCAAGGCA+AGG | - | chr7_1:29275000-29275019 | Msa1015630:intron | 35.0% |
! | TTTTAACACGTTCAAGGCAA+GGG | - | chr7_1:29275001-29275020 | Msa1015630:intron | 35.0% |
! | GCAAATTGGTAATTTCACGT+GGG | - | chr7_1:29275023-29275042 | Msa1015630:intron | 35.0% |
AAGATTGGTGAAGATAAGAG+AGG | + | chr7_1:29275161-29275180 | None:intergenic | 35.0% | |
GGAAGGAGATTTAGAAAGAT+TGG | + | chr7_1:29275176-29275195 | None:intergenic | 35.0% | |
ATGAATTCACTTATCATGGG+AGG | + | chr7_1:29275197-29275216 | None:intergenic | 35.0% | |
CTTGAGTTAGAGAGATCAAA+AGG | + | chr7_1:29275227-29275246 | None:intergenic | 35.0% | |
! | CTTTTGATCTCTCTAACTCA+AGG | - | chr7_1:29275225-29275244 | Msa1015630:intron | 35.0% |
! | TGGATTCATAATCTAGGGTT+TGG | - | chr7_1:29275291-29275310 | Msa1015630:intron | 35.0% |
!! | AAGGGTTTGCTTTGAAATCA+AGG | - | chr7_1:29275406-29275425 | Msa1015630:intron | 35.0% |
!! | AGGGTTTGCTTTGAAATCAA+GGG | - | chr7_1:29275407-29275426 | Msa1015630:intron | 35.0% |
!! | TTGCTTTGAAATCAAGGGTT+AGG | - | chr7_1:29275412-29275431 | Msa1015630:intron | 35.0% |
!! | TGCTTTGAAATCAAGGGTTA+GGG | - | chr7_1:29275413-29275432 | Msa1015630:intron | 35.0% |
CTAAAGTTTCTTCATGGTCA+AGG | - | chr7_1:29275469-29275488 | Msa1015630:intron | 35.0% | |
TGATGCTTCAAGAACTTATG+AGG | - | chr7_1:29275586-29275605 | Msa1015630:intron | 35.0% | |
TAATCATAATCCCAAAGGGT+AGG | + | chr7_1:29275632-29275651 | None:intergenic | 35.0% | |
GGCATAATCATAATCCCAAA+GGG | + | chr7_1:29275636-29275655 | None:intergenic | 35.0% | |
TGGCATAATCATAATCCCAA+AGG | + | chr7_1:29275637-29275656 | None:intergenic | 35.0% | |
AGCATGCATGACATAAAAAG+GGG | + | chr7_1:29275715-29275734 | None:intergenic | 35.0% | |
!! | ACACTTGGTTTGAGGTTTTT+GGG | - | chr7_1:29275808-29275827 | Msa1015630:CDS | 35.0% |
CAGTCCAGAACACTTAAAAA+TGG | + | chr7_1:29275843-29275862 | None:intergenic | 35.0% | |
! | GTGCTTTGAACGTCCATAAA+TGG | - | chr7_1:29273916-29273935 | Msa1015630:CDS | 40.0% |
AAAACACGTTGCGATAGATG+TGG | - | chr7_1:29273954-29273973 | Msa1015630:CDS | 40.0% | |
GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:29274013-29274032 | None:intergenic | 40.0% | |
GAAGCATGAACGAACTTCAT+AGG | - | chr7_1:29274471-29274490 | Msa1015630:intron | 40.0% | |
AATATCTCGATACTGACAGG+CGG | + | chr7_1:29274881-29274900 | None:intergenic | 40.0% | |
GGTAATATCTCGATACTGAC+AGG | + | chr7_1:29274884-29274903 | None:intergenic | 40.0% | |
! | GGCAAATTGGTAATTTCACG+TGG | - | chr7_1:29275022-29275041 | Msa1015630:intron | 40.0% |
! | ATTGGTAATTTCACGTGGGA+AGG | - | chr7_1:29275027-29275046 | Msa1015630:intron | 40.0% |
GTGAAGATAAGAGAGGAAGA+GGG | + | chr7_1:29275154-29275173 | None:intergenic | 40.0% | |
ATTCACTTATCATGGGAGGA+AGG | + | chr7_1:29275193-29275212 | None:intergenic | 40.0% | |
TCTCTAACTCAAGGAAGCTT+GGG | - | chr7_1:29275234-29275253 | Msa1015630:intron | 40.0% | |
!!! | TTGGTTTTGAGCAAGAAGCT+AGG | - | chr7_1:29275310-29275329 | Msa1015630:intron | 40.0% |
!!! | TGGTTTTGAGCAAGAAGCTA+GGG | - | chr7_1:29275311-29275330 | Msa1015630:intron | 40.0% |
! | AAGGGTTAGGGTTTGTTTGT+TGG | - | chr7_1:29275425-29275444 | Msa1015630:intron | 40.0% |
! | AAAAGCCAGGGTTTTTGCTT+AGG | - | chr7_1:29275556-29275575 | Msa1015630:intron | 40.0% |
AAGGGTAGGAAAACTAGCTA+TGG | + | chr7_1:29275618-29275637 | None:intergenic | 40.0% | |
!!! | TAGCTAGTTTTCCTACCCTT+TGG | - | chr7_1:29275618-29275637 | Msa1015630:intron | 40.0% |
!!! | AGCTAGTTTTCCTACCCTTT+GGG | - | chr7_1:29275619-29275638 | Msa1015630:intron | 40.0% |
! | CCAAGTGTCTCTATGTGTTT+TGG | + | chr7_1:29275796-29275815 | None:intergenic | 40.0% |
CCAAAACACATAGAGACACT+TGG | - | chr7_1:29275793-29275812 | Msa1015630:intron | 40.0% | |
! | ACATAGAGACACTTGGTTTG+AGG | - | chr7_1:29275800-29275819 | Msa1015630:intron | 40.0% |
!! | GACACTTGGTTTGAGGTTTT+TGG | - | chr7_1:29275807-29275826 | Msa1015630:CDS | 40.0% |
! | GTGCTTTGAACGTCCATAAA+TGG | - | chr7_1:29273916-29273935 | Msa1015630:CDS | 40.0% |
AAAACACGTTGCGATAGATG+TGG | - | chr7_1:29273954-29273973 | Msa1015630:CDS | 40.0% | |
GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:29274013-29274032 | None:intergenic | 40.0% | |
GAAGCATGAACGAACTTCAT+AGG | - | chr7_1:29274471-29274490 | Msa1015630:intron | 40.0% | |
AATATCTCGATACTGACAGG+CGG | + | chr7_1:29274881-29274900 | None:intergenic | 40.0% | |
GGTAATATCTCGATACTGAC+AGG | + | chr7_1:29274884-29274903 | None:intergenic | 40.0% | |
! | GGCAAATTGGTAATTTCACG+TGG | - | chr7_1:29275022-29275041 | Msa1015630:intron | 40.0% |
! | ATTGGTAATTTCACGTGGGA+AGG | - | chr7_1:29275027-29275046 | Msa1015630:intron | 40.0% |
GTGAAGATAAGAGAGGAAGA+GGG | + | chr7_1:29275154-29275173 | None:intergenic | 40.0% | |
ATTCACTTATCATGGGAGGA+AGG | + | chr7_1:29275193-29275212 | None:intergenic | 40.0% | |
TCTCTAACTCAAGGAAGCTT+GGG | - | chr7_1:29275234-29275253 | Msa1015630:intron | 40.0% | |
!!! | TTGGTTTTGAGCAAGAAGCT+AGG | - | chr7_1:29275310-29275329 | Msa1015630:intron | 40.0% |
!!! | TGGTTTTGAGCAAGAAGCTA+GGG | - | chr7_1:29275311-29275330 | Msa1015630:intron | 40.0% |
! | AAGGGTTAGGGTTTGTTTGT+TGG | - | chr7_1:29275425-29275444 | Msa1015630:intron | 40.0% |
! | AAAAGCCAGGGTTTTTGCTT+AGG | - | chr7_1:29275556-29275575 | Msa1015630:intron | 40.0% |
AAGGGTAGGAAAACTAGCTA+TGG | + | chr7_1:29275618-29275637 | None:intergenic | 40.0% | |
!!! | TAGCTAGTTTTCCTACCCTT+TGG | - | chr7_1:29275618-29275637 | Msa1015630:intron | 40.0% |
!!! | AGCTAGTTTTCCTACCCTTT+GGG | - | chr7_1:29275619-29275638 | Msa1015630:intron | 40.0% |
! | CCAAGTGTCTCTATGTGTTT+TGG | + | chr7_1:29275796-29275815 | None:intergenic | 40.0% |
CCAAAACACATAGAGACACT+TGG | - | chr7_1:29275793-29275812 | Msa1015630:intron | 40.0% | |
! | ACATAGAGACACTTGGTTTG+AGG | - | chr7_1:29275800-29275819 | Msa1015630:intron | 40.0% |
!! | GACACTTGGTTTGAGGTTTT+TGG | - | chr7_1:29275807-29275826 | Msa1015630:CDS | 40.0% |
TCCCAAGTCCTTCGAAAGTA+AGG | - | chr7_1:29273893-29273912 | Msa1015630:CDS | 45.0% | |
CCCTTACTTTCGAAGGACTT+GGG | + | chr7_1:29273897-29273916 | None:intergenic | 45.0% | |
CCCAAGTCCTTCGAAAGTAA+GGG | - | chr7_1:29273894-29273913 | Msa1015630:CDS | 45.0% | |
ACCCTTACTTTCGAAGGACT+TGG | + | chr7_1:29273898-29273917 | None:intergenic | 45.0% | |
! | CAAAGCACCCTTACTTTCGA+AGG | + | chr7_1:29273904-29273923 | None:intergenic | 45.0% |
TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:29274032-29274051 | None:intergenic | 45.0% | |
CCGAATACATCACACATGAC+CGG | + | chr7_1:29274423-29274442 | None:intergenic | 45.0% | |
CCGGTCATGTGTGATGTATT+CGG | - | chr7_1:29274420-29274439 | Msa1015630:intron | 45.0% | |
ACAAACCCTAGCAGACTCAA+CGG | - | chr7_1:29274533-29274552 | Msa1015630:intron | 45.0% | |
GAAAACCGTTGAGTCTGCTA+GGG | + | chr7_1:29274541-29274560 | None:intergenic | 45.0% | |
TGAAAACCGTTGAGTCTGCT+AGG | + | chr7_1:29274542-29274561 | None:intergenic | 45.0% | |
ATATCTCGATACTGACAGGC+GGG | + | chr7_1:29274880-29274899 | None:intergenic | 45.0% | |
GGTGAAGATAAGAGAGGAAG+AGG | + | chr7_1:29275155-29275174 | None:intergenic | 45.0% | |
CTCTCTAACTCAAGGAAGCT+TGG | - | chr7_1:29275233-29275252 | Msa1015630:intron | 45.0% | |
CAAGGAAGCTTGGGATTTGT+TGG | - | chr7_1:29275243-29275262 | Msa1015630:intron | 45.0% | |
AAGCTCCTAAGCAAAAACCC+TGG | + | chr7_1:29275564-29275583 | None:intergenic | 45.0% | |
TCCCAAGTCCTTCGAAAGTA+AGG | - | chr7_1:29273893-29273912 | Msa1015630:CDS | 45.0% | |
CCCTTACTTTCGAAGGACTT+GGG | + | chr7_1:29273897-29273916 | None:intergenic | 45.0% | |
CCCAAGTCCTTCGAAAGTAA+GGG | - | chr7_1:29273894-29273913 | Msa1015630:CDS | 45.0% | |
ACCCTTACTTTCGAAGGACT+TGG | + | chr7_1:29273898-29273917 | None:intergenic | 45.0% | |
! | CAAAGCACCCTTACTTTCGA+AGG | + | chr7_1:29273904-29273923 | None:intergenic | 45.0% |
TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:29274032-29274051 | None:intergenic | 45.0% | |
CCGAATACATCACACATGAC+CGG | + | chr7_1:29274423-29274442 | None:intergenic | 45.0% | |
CCGGTCATGTGTGATGTATT+CGG | - | chr7_1:29274420-29274439 | Msa1015630:intron | 45.0% | |
ACAAACCCTAGCAGACTCAA+CGG | - | chr7_1:29274533-29274552 | Msa1015630:intron | 45.0% | |
GAAAACCGTTGAGTCTGCTA+GGG | + | chr7_1:29274541-29274560 | None:intergenic | 45.0% | |
TGAAAACCGTTGAGTCTGCT+AGG | + | chr7_1:29274542-29274561 | None:intergenic | 45.0% | |
ATATCTCGATACTGACAGGC+GGG | + | chr7_1:29274880-29274899 | None:intergenic | 45.0% | |
GGTGAAGATAAGAGAGGAAG+AGG | + | chr7_1:29275155-29275174 | None:intergenic | 45.0% | |
CTCTCTAACTCAAGGAAGCT+TGG | - | chr7_1:29275233-29275252 | Msa1015630:intron | 45.0% | |
CAAGGAAGCTTGGGATTTGT+TGG | - | chr7_1:29275243-29275262 | Msa1015630:intron | 45.0% | |
AAGCTCCTAAGCAAAAACCC+TGG | + | chr7_1:29275564-29275583 | None:intergenic | 45.0% | |
!!! | TTATTAATTGAATATTTTAA+TGG | - | chr7_1:29274602-29274621 | Msa1015630:intron | 5.0% |
!!! | TTATTAATTGAATATTTTAA+TGG | - | chr7_1:29274602-29274621 | Msa1015630:intron | 5.0% |
TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:29273878-29273897 | None:intergenic | 50.0% | |
CGTTCAAGGCAAGGGCAAAT+TGG | - | chr7_1:29275009-29275028 | Msa1015630:intron | 50.0% | |
AGACTAGAGAGAGAAGGGAG+GGG | + | chr7_1:29275127-29275146 | None:intergenic | 50.0% | |
GAGACTAGAGAGAGAAGGGA+GGG | + | chr7_1:29275128-29275147 | None:intergenic | 50.0% | |
TGAGACTAGAGAGAGAAGGG+AGG | + | chr7_1:29275129-29275148 | None:intergenic | 50.0% | |
GCGTGAGACTAGAGAGAGAA+GGG | + | chr7_1:29275132-29275151 | None:intergenic | 50.0% | |
TGAGCAAGAAGCTAGGGCTT+TGG | - | chr7_1:29275317-29275336 | Msa1015630:intron | 50.0% | |
GAGCAAGAAGCTAGGGCTTT+GGG | - | chr7_1:29275318-29275337 | Msa1015630:intron | 50.0% | |
!! | GAAGCTAGGGCTTTGGGTTA+TGG | - | chr7_1:29275324-29275343 | Msa1015630:intron | 50.0% |
!! | AGGGCTTTGGGTTATGGTTG+TGG | - | chr7_1:29275330-29275349 | Msa1015630:intron | 50.0% |
!! | GGGCTTTGGGTTATGGTTGT+GGG | - | chr7_1:29275331-29275350 | Msa1015630:intron | 50.0% |
TTGCAAGTGGGACAAAAGCC+AGG | - | chr7_1:29275543-29275562 | Msa1015630:intron | 50.0% | |
TGCAAGTGGGACAAAAGCCA+GGG | - | chr7_1:29275544-29275563 | Msa1015630:intron | 50.0% | |
TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:29273878-29273897 | None:intergenic | 50.0% | |
CGTTCAAGGCAAGGGCAAAT+TGG | - | chr7_1:29275009-29275028 | Msa1015630:intron | 50.0% | |
AGACTAGAGAGAGAAGGGAG+GGG | + | chr7_1:29275127-29275146 | None:intergenic | 50.0% | |
GAGACTAGAGAGAGAAGGGA+GGG | + | chr7_1:29275128-29275147 | None:intergenic | 50.0% | |
TGAGACTAGAGAGAGAAGGG+AGG | + | chr7_1:29275129-29275148 | None:intergenic | 50.0% | |
GCGTGAGACTAGAGAGAGAA+GGG | + | chr7_1:29275132-29275151 | None:intergenic | 50.0% | |
TGAGCAAGAAGCTAGGGCTT+TGG | - | chr7_1:29275317-29275336 | Msa1015630:intron | 50.0% | |
GAGCAAGAAGCTAGGGCTTT+GGG | - | chr7_1:29275318-29275337 | Msa1015630:intron | 50.0% | |
!! | GAAGCTAGGGCTTTGGGTTA+TGG | - | chr7_1:29275324-29275343 | Msa1015630:intron | 50.0% |
!! | AGGGCTTTGGGTTATGGTTG+TGG | - | chr7_1:29275330-29275349 | Msa1015630:intron | 50.0% |
!! | GGGCTTTGGGTTATGGTTGT+GGG | - | chr7_1:29275331-29275350 | Msa1015630:intron | 50.0% |
TTGCAAGTGGGACAAAAGCC+AGG | - | chr7_1:29275543-29275562 | Msa1015630:intron | 50.0% | |
TGCAAGTGGGACAAAAGCCA+GGG | - | chr7_1:29275544-29275563 | Msa1015630:intron | 50.0% | |
CATCACACATGACCGGAGCT+AGG | + | chr7_1:29274416-29274435 | None:intergenic | 55.0% | |
TTACCAGTCGATCGTGCCAG+AGG | - | chr7_1:29274899-29274918 | Msa1015630:intron | 55.0% | |
ATTCCTCTGGCACGATCGAC+TGG | + | chr7_1:29274905-29274924 | None:intergenic | 55.0% | |
GGCGTGAGACTAGAGAGAGA+AGG | + | chr7_1:29275133-29275152 | None:intergenic | 55.0% | |
TGGACTGTCCTAACTCGCCA+CGG | - | chr7_1:29275856-29275875 | Msa1015630:CDS | 55.0% | |
GGCGAGCTAGAACTCCGAAA+GGG | - | chr7_1:29275897-29275916 | Msa1015630:CDS | 55.0% | |
GCGAGCTAGAACTCCGAAAG+GGG | - | chr7_1:29275898-29275917 | Msa1015630:CDS | 55.0% | |
CGAGCTAGAACTCCGAAAGG+GGG | - | chr7_1:29275899-29275918 | Msa1015630:CDS | 55.0% | |
GAGCTAGAACTCCGAAAGGG+GGG | - | chr7_1:29275900-29275919 | Msa1015630:CDS | 55.0% | |
CATCACACATGACCGGAGCT+AGG | + | chr7_1:29274416-29274435 | None:intergenic | 55.0% | |
TTACCAGTCGATCGTGCCAG+AGG | - | chr7_1:29274899-29274918 | Msa1015630:intron | 55.0% | |
ATTCCTCTGGCACGATCGAC+TGG | + | chr7_1:29274905-29274924 | None:intergenic | 55.0% | |
GGCGTGAGACTAGAGAGAGA+AGG | + | chr7_1:29275133-29275152 | None:intergenic | 55.0% | |
TGGACTGTCCTAACTCGCCA+CGG | - | chr7_1:29275856-29275875 | Msa1015630:CDS | 55.0% | |
GGCGAGCTAGAACTCCGAAA+GGG | - | chr7_1:29275897-29275916 | Msa1015630:CDS | 55.0% | |
GCGAGCTAGAACTCCGAAAG+GGG | - | chr7_1:29275898-29275917 | Msa1015630:CDS | 55.0% | |
CGAGCTAGAACTCCGAAAGG+GGG | - | chr7_1:29275899-29275918 | Msa1015630:CDS | 55.0% | |
GAGCTAGAACTCCGAAAGGG+GGG | - | chr7_1:29275900-29275919 | Msa1015630:CDS | 55.0% | |
ATAGCTCGCCGTGGCGAGTT+AGG | + | chr7_1:29275867-29275886 | None:intergenic | 60.0% | |
TGGCGAGTAATAGCTCGCCG+TGG | + | chr7_1:29275876-29275895 | None:intergenic | 60.0% | |
CGGCGAGCTATTACTCGCCA+CGG | - | chr7_1:29275876-29275895 | Msa1015630:CDS | 60.0% | |
!! | TTCGGAGTTCTAGCTCGCCG+TGG | + | chr7_1:29275896-29275915 | None:intergenic | 60.0% |
CGGCGAGCTAGAACTCCGAA+AGG | - | chr7_1:29275896-29275915 | Msa1015630:CDS | 60.0% | |
ATAGCTCGCCGTGGCGAGTT+AGG | + | chr7_1:29275867-29275886 | None:intergenic | 60.0% | |
TGGCGAGTAATAGCTCGCCG+TGG | + | chr7_1:29275876-29275895 | None:intergenic | 60.0% | |
CGGCGAGCTATTACTCGCCA+CGG | - | chr7_1:29275876-29275895 | Msa1015630:CDS | 60.0% | |
!! | TTCGGAGTTCTAGCTCGCCG+TGG | + | chr7_1:29275896-29275915 | None:intergenic | 60.0% |
CGGCGAGCTAGAACTCCGAA+AGG | - | chr7_1:29275896-29275915 | Msa1015630:CDS | 60.0% | |
TAGCTCGCCGTGGCGAGTTG+GGG | + | chr7_1:29275936-29275955 | None:intergenic | 65.0% | |
GTAGCTCGCCGTGGCGAGTT+GGG | + | chr7_1:29275937-29275956 | None:intergenic | 65.0% | |
TAGCTCGCCGTGGCGAGTTG+GGG | + | chr7_1:29275936-29275955 | None:intergenic | 65.0% | |
GTAGCTCGCCGTGGCGAGTT+GGG | + | chr7_1:29275937-29275956 | None:intergenic | 65.0% | |
GGCGAGCAGGACCCCCCTTT+CGG | + | chr7_1:29275914-29275933 | None:intergenic | 70.0% | |
TGCTCGCCCCCAACTCGCCA+CGG | - | chr7_1:29275926-29275945 | Msa1015630:CDS | 70.0% | |
! | AGCTCGCCGTGGCGAGTTGG+GGG | + | chr7_1:29275935-29275954 | None:intergenic | 70.0% |
GGTAGCTCGCCGTGGCGAGT+TGG | + | chr7_1:29275938-29275957 | None:intergenic | 70.0% | |
AGGCGAGTGGTAGCTCGCCG+TGG | + | chr7_1:29275946-29275965 | None:intergenic | 70.0% | |
GGCGAGCAGGACCCCCCTTT+CGG | + | chr7_1:29275914-29275933 | None:intergenic | 70.0% | |
TGCTCGCCCCCAACTCGCCA+CGG | - | chr7_1:29275926-29275945 | Msa1015630:CDS | 70.0% | |
! | AGCTCGCCGTGGCGAGTTGG+GGG | + | chr7_1:29275935-29275954 | None:intergenic | 70.0% |
GGTAGCTCGCCGTGGCGAGT+TGG | + | chr7_1:29275938-29275957 | None:intergenic | 70.0% | |
AGGCGAGTGGTAGCTCGCCG+TGG | + | chr7_1:29275946-29275965 | None:intergenic | 70.0% | |
! | GTGGCGAGTTGGGGGCGAGC+AGG | + | chr7_1:29275927-29275946 | None:intergenic | 75.0% |
! | GTGGCGAGTTGGGGGCGAGC+AGG | + | chr7_1:29275927-29275946 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 29273870 | 29275974 | 29273870 | ID=Msa1015630;Name=Msa1015630 |
chr7_1 | mRNA | 29273870 | 29275974 | 29273870 | ID=Msa1015630-mRNA-1;Parent=Msa1015630;Name=Msa1015630-mRNA-1;_AED=0.70;_eAED=0.70;_QI=0|0|0|0.33|1|1|3|0|140 |
chr7_1 | exon | 29275801 | 29275974 | 29275801 | ID=Msa1015630-mRNA-1:exon:6038;Parent=Msa1015630-mRNA-1 |
chr7_1 | exon | 29274187 | 29274266 | 29274187 | ID=Msa1015630-mRNA-1:exon:6037;Parent=Msa1015630-mRNA-1 |
chr7_1 | exon | 29273870 | 29274038 | 29273870 | ID=Msa1015630-mRNA-1:exon:6036;Parent=Msa1015630-mRNA-1 |
chr7_1 | CDS | 29275801 | 29275974 | 29275801 | ID=Msa1015630-mRNA-1:cds;Parent=Msa1015630-mRNA-1 |
chr7_1 | CDS | 29274187 | 29274266 | 29274187 | ID=Msa1015630-mRNA-1:cds;Parent=Msa1015630-mRNA-1 |
chr7_1 | CDS | 29273870 | 29274038 | 29273870 | ID=Msa1015630-mRNA-1:cds;Parent=Msa1015630-mRNA-1 |
Gene Sequence |
Protein sequence |