Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015640 | KEH17097.1 | 68.182 | 110 | 14 | 1 | 75 | 184 | 11 | 99 | 3.09e-41 | 147 |
| Msa1015640 | KEH17097.1 | 68.333 | 120 | 17 | 1 | 1 | 120 | 1 | 99 | 2.74e-47 | 162 |
| Msa1015640 | KEH17097.1 | 82.000 | 50 | 9 | 0 | 139 | 188 | 11 | 60 | 1.92e-19 | 91.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015640 | G7ZUP9 | 68.182 | 110 | 14 | 1 | 75 | 184 | 11 | 99 | 1.48e-41 | 147 |
| Msa1015640 | G7ZUP9 | 68.333 | 120 | 17 | 1 | 1 | 120 | 1 | 99 | 1.31e-47 | 162 |
| Msa1015640 | G7ZUP9 | 82.000 | 50 | 9 | 0 | 139 | 188 | 11 | 60 | 9.16e-20 | 91.7 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1015640 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | 7_1:-29355178 | Msa1015640:CDS |
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | 7_1:-29357286 | Msa1015640:CDS |
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | 7_1:-29359406 | Msa1015640:CDS |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | 7_1:+29354993 | None:intergenic |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | 7_1:+29357101 | None:intergenic |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | 7_1:+29359221 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | 7_1:+29355018 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | 7_1:+29357126 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | 7_1:+29359246 | None:intergenic |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | 7_1:-29355024 | Msa1015640:CDS |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | 7_1:-29357132 | Msa1015640:CDS |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | 7_1:-29359252 | Msa1015640:CDS |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | 7_1:-29355201 | Msa1015640:intron |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | 7_1:-29357309 | Msa1015640:intron |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | 7_1:-29359429 | Msa1015640:CDS |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+29355084 | None:intergenic |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+29357192 | None:intergenic |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+29359312 | None:intergenic |
| ACCCCTACTTTCGAAGGACT+TGG | 0.483526 | 7_1:+29359427 | None:intergenic |
| CCCCTACTTTCGAAGGACTT+GGG | 0.544991 | 7_1:+29359428 | None:intergenic |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | 7_1:-29355202 | Msa1015640:intron |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | 7_1:-29357310 | Msa1015640:intron |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | 7_1:-29359430 | Msa1015640:CDS |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+29355065 | None:intergenic |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+29357173 | None:intergenic |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+29359293 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | 7_1:+29355193 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | 7_1:+29357301 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | 7_1:+29359421 | None:intergenic |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | 7_1:-29355200 | Msa1015640:intron |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | 7_1:-29357308 | Msa1015640:intron |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | 7_1:-29359428 | Msa1015640:CDS |
| TGGGACAATCAAAGCAAGCG+TGG | 0.684170 | 7_1:+29359447 | None:intergenic |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-29355140 | Msa1015640:CDS |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-29357248 | Msa1015640:CDS |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-29359368 | Msa1015640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATTAATAA+GGG | + | chr7_1:29356518-29356537 | None:intergenic | 0.0% |
| !! | TATATATATATATATTAATA+AGG | + | chr7_1:29356519-29356538 | None:intergenic | 0.0% |
| !! | TATATATATATATTTAATAA+GGG | + | chr7_1:29356547-29356566 | None:intergenic | 0.0% |
| !! | ATATATATATATATTTAATA+AGG | + | chr7_1:29356546-29356565 | None:intergenic | 0.0% |
| !!! | TTAATTTTAGTTAAATTTCT+TGG | - | chr7_1:29355328-29355347 | Msa1015640:intron | 10.0% |
| !! | ATAAAATTATAAACTCAAAA+TGG | - | chr7_1:29355662-29355681 | Msa1015640:intron | 10.0% |
| !!! | TTTCTATTTAGAATATTTTT+AGG | - | chr7_1:29355841-29355860 | Msa1015640:intron | 10.0% |
| !!! | TCTTTATTTATTTTAAATTG+AGG | - | chr7_1:29355870-29355889 | Msa1015640:intron | 10.0% |
| !!! | CTTTATTTATTTTAAATTGA+GGG | - | chr7_1:29355871-29355890 | Msa1015640:intron | 10.0% |
| !! | AATTCTATTAAATCATATTT+AGG | - | chr7_1:29356620-29356639 | Msa1015640:intron | 10.0% |
| !! | ATTCTATTAAATCATATTTA+GGG | - | chr7_1:29356621-29356640 | Msa1015640:intron | 10.0% |
| !!! | TTAATTTTAGTTAAATTTCT+TGG | - | chr7_1:29355328-29355347 | Msa1015640:intron | 10.0% |
| !! | ATAAAATTATAAACTCAAAA+TGG | - | chr7_1:29355662-29355681 | Msa1015640:intron | 10.0% |
| !!! | TTTCTATTTAGAATATTTTT+AGG | - | chr7_1:29355841-29355860 | Msa1015640:intron | 10.0% |
| !!! | TCTTTATTTATTTTAAATTG+AGG | - | chr7_1:29355870-29355889 | Msa1015640:intron | 10.0% |
| !!! | CTTTATTTATTTTAAATTGA+GGG | - | chr7_1:29355871-29355890 | Msa1015640:intron | 10.0% |
| !! | AATTCTATTAAATCATATTT+AGG | - | chr7_1:29356620-29356639 | Msa1015640:intron | 10.0% |
| !! | ATTCTATTAAATCATATTTA+GGG | - | chr7_1:29356621-29356640 | Msa1015640:intron | 10.0% |
| !! | ATATACTATAAACTGAAATA+TGG | + | chr7_1:29355179-29355198 | None:intergenic | 15.0% |
| !!! | TATGAGTATTTTTTTCAAAA+GGG | + | chr7_1:29355775-29355794 | None:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTCAAA+AGG | + | chr7_1:29355776-29355795 | None:intergenic | 15.0% |
| !! | TGTTATGTATAAAAAAAATG+AGG | - | chr7_1:29355932-29355951 | Msa1015640:intron | 15.0% |
| !! | GTTATGTATAAAAAAAATGA+GGG | - | chr7_1:29355933-29355952 | Msa1015640:intron | 15.0% |
| !! | ATATACTATAAACTGAAATA+TGG | + | chr7_1:29355179-29355198 | None:intergenic | 15.0% |
| !!! | TATGAGTATTTTTTTCAAAA+GGG | + | chr7_1:29355775-29355794 | None:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTCAAA+AGG | + | chr7_1:29355776-29355795 | None:intergenic | 15.0% |
| !! | TGTTATGTATAAAAAAAATG+AGG | - | chr7_1:29355932-29355951 | Msa1015640:intron | 15.0% |
| !! | GTTATGTATAAAAAAAATGA+GGG | - | chr7_1:29355933-29355952 | Msa1015640:intron | 15.0% |
| !! | ATATACTATAAACTGAAATA+TGG | + | chr7_1:29355179-29355198 | None:intergenic | 15.0% |
| !! | TATTATAATTCTTGCATGTA+TGG | - | chr7_1:29355284-29355303 | Msa1015640:intron | 20.0% |
| !!! | TTTTAATTATGTATGAGAGT+AGG | - | chr7_1:29355370-29355389 | Msa1015640:intron | 20.0% |
| !! | TGTGAATAATAAACTACAAA+AGG | + | chr7_1:29355472-29355491 | None:intergenic | 20.0% |
| !!! | TATATGTGATGCTAAATTTT+AGG | + | chr7_1:29356492-29356511 | None:intergenic | 20.0% |
| !! | TATTATAATTCTTGCATGTA+TGG | - | chr7_1:29355284-29355303 | Msa1015640:intron | 20.0% |
| !!! | TTTTAATTATGTATGAGAGT+AGG | - | chr7_1:29355370-29355389 | Msa1015640:intron | 20.0% |
| !! | TGTGAATAATAAACTACAAA+AGG | + | chr7_1:29355472-29355491 | None:intergenic | 20.0% |
| !!! | TATATGTGATGCTAAATTTT+AGG | + | chr7_1:29356492-29356511 | None:intergenic | 20.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:29355131-29355150 | None:intergenic | 25.0% |
| !! | TTTGTCGACTATATATTCTT+AGG | - | chr7_1:29355247-29355266 | Msa1015640:intron | 25.0% |
| ! | AGGATGAAATATTCTATTAC+AGG | - | chr7_1:29355390-29355409 | Msa1015640:intron | 25.0% |
| ! | AACATAATTAAAAGCTTACG+AGG | - | chr7_1:29355573-29355592 | Msa1015640:intron | 25.0% |
| ! | AATTCTATTGTCTACTTGTA+GGG | - | chr7_1:29356422-29356441 | Msa1015640:intron | 25.0% |
| ! | GCAACAAAAACTATGAAATA+AGG | - | chr7_1:29356859-29356878 | Msa1015640:intron | 25.0% |
| ! | TTATTCAACAGTATATCCAT+GGG | + | chr7_1:29356921-29356940 | None:intergenic | 25.0% |
| ! | ATTATTCAACAGTATATCCA+TGG | + | chr7_1:29356922-29356941 | None:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:29355131-29355150 | None:intergenic | 25.0% |
| !! | TTTGTCGACTATATATTCTT+AGG | - | chr7_1:29355247-29355266 | Msa1015640:intron | 25.0% |
| ! | AGGATGAAATATTCTATTAC+AGG | - | chr7_1:29355390-29355409 | Msa1015640:intron | 25.0% |
| ! | AACATAATTAAAAGCTTACG+AGG | - | chr7_1:29355573-29355592 | Msa1015640:intron | 25.0% |
| ! | AATTCTATTGTCTACTTGTA+GGG | - | chr7_1:29356422-29356441 | Msa1015640:intron | 25.0% |
| ! | GCAACAAAAACTATGAAATA+AGG | - | chr7_1:29356859-29356878 | Msa1015640:intron | 25.0% |
| ! | TTATTCAACAGTATATCCAT+GGG | + | chr7_1:29356921-29356940 | None:intergenic | 25.0% |
| ! | ATTATTCAACAGTATATCCA+TGG | + | chr7_1:29356922-29356941 | None:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:29355131-29355150 | None:intergenic | 25.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | chr7_1:29355007-29355026 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | chr7_1:29355145-29355164 | Msa1015640:CDS | 30.0% | |
| TAGTTTATTATTCACAGCTC+CGG | - | chr7_1:29355476-29355495 | Msa1015640:intron | 30.0% | |
| ATTGACAGCATATTAGAGTA+GGG | + | chr7_1:29356098-29356117 | None:intergenic | 30.0% | |
| AATTGACAGCATATTAGAGT+AGG | + | chr7_1:29356099-29356118 | None:intergenic | 30.0% | |
| CTACAAGTAGACAATAGAAT+TGG | + | chr7_1:29356423-29356442 | None:intergenic | 30.0% | |
| CAATTCTATTGTCTACTTGT+AGG | - | chr7_1:29356421-29356440 | Msa1015640:intron | 30.0% | |
| !!! | AGCTAAGTTTTGGGTTTAAA+TGG | + | chr7_1:29356451-29356470 | None:intergenic | 30.0% |
| !! | TGTGATGCTAAATTTTAGGT+GGG | + | chr7_1:29356488-29356507 | None:intergenic | 30.0% |
| ! | ATGTGATGCTAAATTTTAGG+TGG | + | chr7_1:29356489-29356508 | None:intergenic | 30.0% |
| !! | TAAATTTTGTTGTGAACCCA+TGG | - | chr7_1:29356902-29356921 | Msa1015640:intron | 30.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | chr7_1:29355007-29355026 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | chr7_1:29355145-29355164 | Msa1015640:CDS | 30.0% | |
| TAGTTTATTATTCACAGCTC+CGG | - | chr7_1:29355476-29355495 | Msa1015640:intron | 30.0% | |
| ATTGACAGCATATTAGAGTA+GGG | + | chr7_1:29356098-29356117 | None:intergenic | 30.0% | |
| AATTGACAGCATATTAGAGT+AGG | + | chr7_1:29356099-29356118 | None:intergenic | 30.0% | |
| CTACAAGTAGACAATAGAAT+TGG | + | chr7_1:29356423-29356442 | None:intergenic | 30.0% | |
| CAATTCTATTGTCTACTTGT+AGG | - | chr7_1:29356421-29356440 | Msa1015640:intron | 30.0% | |
| !!! | AGCTAAGTTTTGGGTTTAAA+TGG | + | chr7_1:29356451-29356470 | None:intergenic | 30.0% |
| !! | TGTGATGCTAAATTTTAGGT+GGG | + | chr7_1:29356488-29356507 | None:intergenic | 30.0% |
| ! | ATGTGATGCTAAATTTTAGG+TGG | + | chr7_1:29356489-29356508 | None:intergenic | 30.0% |
| !! | TAAATTTTGTTGTGAACCCA+TGG | - | chr7_1:29356902-29356921 | Msa1015640:intron | 30.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | chr7_1:29355007-29355026 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | chr7_1:29355145-29355164 | Msa1015640:CDS | 30.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | chr7_1:29355116-29355135 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | chr7_1:29355154-29355173 | None:intergenic | 35.0% | |
| !!! | TTTGGATGTCATTTTGCTCT+TGG | + | chr7_1:29356050-29356069 | None:intergenic | 35.0% |
| ! | GTAGTTGGACACAATTCTTT+TGG | + | chr7_1:29356068-29356087 | None:intergenic | 35.0% |
| ! | AAATTAGTTGACTCTCGAAC+TGG | + | chr7_1:29356393-29356412 | None:intergenic | 35.0% |
| ! | TCCATACAGAGCTAAGTTTT+GGG | + | chr7_1:29356460-29356479 | None:intergenic | 35.0% |
| AAATAGTGCATTAGAGTGTG+AGG | + | chr7_1:29356983-29357002 | None:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | chr7_1:29355116-29355135 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | chr7_1:29355154-29355173 | None:intergenic | 35.0% | |
| !!! | TTTGGATGTCATTTTGCTCT+TGG | + | chr7_1:29356050-29356069 | None:intergenic | 35.0% |
| ! | GTAGTTGGACACAATTCTTT+TGG | + | chr7_1:29356068-29356087 | None:intergenic | 35.0% |
| ! | AAATTAGTTGACTCTCGAAC+TGG | + | chr7_1:29356393-29356412 | None:intergenic | 35.0% |
| ! | TCCATACAGAGCTAAGTTTT+GGG | + | chr7_1:29356460-29356479 | None:intergenic | 35.0% |
| AAATAGTGCATTAGAGTGTG+AGG | + | chr7_1:29356983-29357002 | None:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | chr7_1:29355116-29355135 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | chr7_1:29355154-29355173 | None:intergenic | 35.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | chr7_1:29354991-29355010 | Msa1015640:CDS | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | chr7_1:29355029-29355048 | Msa1015640:intron | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:29355088-29355107 | None:intergenic | 40.0% | |
| GAAGCATGAACGAACTTCAT+AGG | - | chr7_1:29355546-29355565 | Msa1015640:intron | 40.0% | |
| ACGAGGATTAAAAGCTTACG+AGG | - | chr7_1:29355590-29355609 | Msa1015640:intron | 40.0% | |
| GAAAACCATTGAGTCTGCTA+GGG | + | chr7_1:29355633-29355652 | None:intergenic | 40.0% | |
| TGAAAACCATTGAGTCTGCT+AGG | + | chr7_1:29355634-29355653 | None:intergenic | 40.0% | |
| AGAATTGTGTCCAACTACGT+TGG | - | chr7_1:29356070-29356089 | Msa1015640:intron | 40.0% | |
| GAATTGTGTCCAACTACGTT+GGG | - | chr7_1:29356071-29356090 | Msa1015640:intron | 40.0% | |
| !! | ACCCAAAACTTAGCTCTGTA+TGG | - | chr7_1:29356456-29356475 | Msa1015640:intron | 40.0% |
| ! | GTCCATACAGAGCTAAGTTT+TGG | + | chr7_1:29356461-29356480 | None:intergenic | 40.0% |
| GAACATCGTGGATGATTCTT+AGG | + | chr7_1:29357051-29357070 | None:intergenic | 40.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | chr7_1:29354991-29355010 | Msa1015640:CDS | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | chr7_1:29355029-29355048 | Msa1015640:intron | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:29355088-29355107 | None:intergenic | 40.0% | |
| GAAGCATGAACGAACTTCAT+AGG | - | chr7_1:29355546-29355565 | Msa1015640:intron | 40.0% | |
| ACGAGGATTAAAAGCTTACG+AGG | - | chr7_1:29355590-29355609 | Msa1015640:intron | 40.0% | |
| GAAAACCATTGAGTCTGCTA+GGG | + | chr7_1:29355633-29355652 | None:intergenic | 40.0% | |
| TGAAAACCATTGAGTCTGCT+AGG | + | chr7_1:29355634-29355653 | None:intergenic | 40.0% | |
| AGAATTGTGTCCAACTACGT+TGG | - | chr7_1:29356070-29356089 | Msa1015640:intron | 40.0% | |
| GAATTGTGTCCAACTACGTT+GGG | - | chr7_1:29356071-29356090 | Msa1015640:intron | 40.0% | |
| !! | ACCCAAAACTTAGCTCTGTA+TGG | - | chr7_1:29356456-29356475 | Msa1015640:intron | 40.0% |
| ! | GTCCATACAGAGCTAAGTTT+TGG | + | chr7_1:29356461-29356480 | None:intergenic | 40.0% |
| GAACATCGTGGATGATTCTT+AGG | + | chr7_1:29357051-29357070 | None:intergenic | 40.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | chr7_1:29354991-29355010 | Msa1015640:CDS | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | chr7_1:29355029-29355048 | Msa1015640:intron | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:29355088-29355107 | None:intergenic | 40.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | chr7_1:29354968-29354987 | Msa1015640:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:29355107-29355126 | None:intergenic | 45.0% | |
| CCGAATACATCACACATGAC+CGG | + | chr7_1:29355498-29355517 | None:intergenic | 45.0% | |
| CCGGTCATGTGTGATGTATT+CGG | - | chr7_1:29355495-29355514 | Msa1015640:intron | 45.0% | |
| ACAAACCCTAGCAGACTCAA+TGG | - | chr7_1:29355625-29355644 | Msa1015640:intron | 45.0% | |
| AGTGCATTAGAGTGTGAGGT+AGG | + | chr7_1:29356979-29356998 | None:intergenic | 45.0% | |
| AAAGCAAGTGTGGAACATCG+TGG | + | chr7_1:29357063-29357082 | None:intergenic | 45.0% | |
| TGGGACAATCAAAGCAAGTG+TGG | + | chr7_1:29357073-29357092 | None:intergenic | 45.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | chr7_1:29354968-29354987 | Msa1015640:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:29355107-29355126 | None:intergenic | 45.0% | |
| CCGAATACATCACACATGAC+CGG | + | chr7_1:29355498-29355517 | None:intergenic | 45.0% | |
| CCGGTCATGTGTGATGTATT+CGG | - | chr7_1:29355495-29355514 | Msa1015640:intron | 45.0% | |
| ACAAACCCTAGCAGACTCAA+TGG | - | chr7_1:29355625-29355644 | Msa1015640:intron | 45.0% | |
| AGTGCATTAGAGTGTGAGGT+AGG | + | chr7_1:29356979-29356998 | None:intergenic | 45.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | chr7_1:29354968-29354987 | Msa1015640:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:29355107-29355126 | None:intergenic | 45.0% | |
| !!! | TTATTAATTGAATATTTTAA+TGG | - | chr7_1:29355694-29355713 | Msa1015640:intron | 5.0% |
| !! | TCATAAATATTATTAAAAAA+AGG | - | chr7_1:29356121-29356140 | Msa1015640:intron | 5.0% |
| !!! | ATTTATTTATTTTTATTTGA+AGG | - | chr7_1:29356212-29356231 | Msa1015640:intron | 5.0% |
| !!! | TTTTTTTTTAAAAAAAAACT+TGG | - | chr7_1:29356364-29356383 | Msa1015640:intron | 5.0% |
| !!! | TTATTAATTGAATATTTTAA+TGG | - | chr7_1:29355694-29355713 | Msa1015640:intron | 5.0% |
| !! | TCATAAATATTATTAAAAAA+AGG | - | chr7_1:29356121-29356140 | Msa1015640:intron | 5.0% |
| !!! | ATTTATTTATTTTTATTTGA+AGG | - | chr7_1:29356212-29356231 | Msa1015640:intron | 5.0% |
| !!! | TTTTTTTTAAAAAAAAAACT+TGG | - | chr7_1:29358485-29358504 | Msa1015640:intron | 5.0% |
| TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:29354953-29354972 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | chr7_1:29354967-29354986 | Msa1015640:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | chr7_1:29354972-29354991 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | chr7_1:29354969-29354988 | Msa1015640:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | chr7_1:29354973-29354992 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | chr7_1:29354979-29354998 | None:intergenic | 50.0% |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | chr7_1:29354967-29354986 | Msa1015640:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | chr7_1:29354972-29354991 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | chr7_1:29354969-29354988 | Msa1015640:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | chr7_1:29354973-29354992 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | chr7_1:29354979-29354998 | None:intergenic | 50.0% |
| AAAGCAAGCGTGGAACATCG+TGG | + | chr7_1:29359171-29359190 | None:intergenic | 50.0% | |
| TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:29354953-29354972 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | chr7_1:29354967-29354986 | Msa1015640:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | chr7_1:29354972-29354991 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | chr7_1:29354969-29354988 | Msa1015640:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | chr7_1:29354973-29354992 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | chr7_1:29354979-29354998 | None:intergenic | 50.0% |
| GAGTAGGGTCCCAACGTAGT+TGG | + | chr7_1:29356083-29356102 | None:intergenic | 55.0% | |
| GAGTAGGGTCCCAACGTAGT+TGG | + | chr7_1:29356083-29356102 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 29354945 | 29359474 | 29354945 | ID=Msa1015640;Name=Msa1015640 |
| chr7_1 | mRNA | 29354945 | 29359474 | 29354945 | ID=Msa1015640-mRNA-1;Parent=Msa1015640;Name=Msa1015640-mRNA-1;_AED=0.14;_eAED=0.37;_QI=0|0|0|1|0|0|6|0|219 |
| chr7_1 | exon | 29359301 | 29359474 | 29359301 | ID=Msa1015640-mRNA-1:exon:6044;Parent=Msa1015640-mRNA-1 |
| chr7_1 | exon | 29359227 | 29359274 | 29359227 | ID=Msa1015640-mRNA-1:exon:6043;Parent=Msa1015640-mRNA-1 |
| chr7_1 | exon | 29357181 | 29357324 | 29357181 | ID=Msa1015640-mRNA-1:exon:6042;Parent=Msa1015640-mRNA-1 |
| chr7_1 | exon | 29357107 | 29357154 | 29357107 | ID=Msa1015640-mRNA-1:exon:6041;Parent=Msa1015640-mRNA-1 |
| chr7_1 | exon | 29355073 | 29355216 | 29355073 | ID=Msa1015640-mRNA-1:exon:6040;Parent=Msa1015640-mRNA-1 |
| chr7_1 | exon | 29354945 | 29355046 | 29354945 | ID=Msa1015640-mRNA-1:exon:6039;Parent=Msa1015640-mRNA-1 |
| chr7_1 | CDS | 29359301 | 29359474 | 29359301 | ID=Msa1015640-mRNA-1:cds;Parent=Msa1015640-mRNA-1 |
| chr7_1 | CDS | 29359227 | 29359274 | 29359227 | ID=Msa1015640-mRNA-1:cds;Parent=Msa1015640-mRNA-1 |
| chr7_1 | CDS | 29357181 | 29357324 | 29357181 | ID=Msa1015640-mRNA-1:cds;Parent=Msa1015640-mRNA-1 |
| chr7_1 | CDS | 29357107 | 29357154 | 29357107 | ID=Msa1015640-mRNA-1:cds;Parent=Msa1015640-mRNA-1 |
| chr7_1 | CDS | 29355073 | 29355216 | 29355073 | ID=Msa1015640-mRNA-1:cds;Parent=Msa1015640-mRNA-1 |
| chr7_1 | CDS | 29354945 | 29355046 | 29354945 | ID=Msa1015640-mRNA-1:cds;Parent=Msa1015640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
