Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015650 | KEH17097.1 | 68.182 | 110 | 14 | 1 | 75 | 184 | 11 | 99 | 1.98e-41 | 147 |
| Msa1015650 | KEH17097.1 | 68.333 | 120 | 17 | 1 | 1 | 120 | 1 | 99 | 1.54e-47 | 162 |
| Msa1015650 | KEH17097.1 | 82.000 | 50 | 9 | 0 | 139 | 188 | 11 | 60 | 1.48e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015650 | G7ZUP9 | 68.182 | 110 | 14 | 1 | 75 | 184 | 11 | 99 | 9.43e-42 | 147 |
| Msa1015650 | G7ZUP9 | 68.333 | 120 | 17 | 1 | 1 | 120 | 1 | 99 | 7.34e-48 | 162 |
| Msa1015650 | G7ZUP9 | 82.000 | 50 | 9 | 0 | 139 | 188 | 11 | 60 | 7.08e-20 | 91.3 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1015650 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | 7_1:-29391848 | Msa1015650:CDS |
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | 7_1:-29393984 | Msa1015650:CDS |
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | 7_1:-29396114 | Msa1015650:CDS |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | 7_1:+29391663 | None:intergenic |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | 7_1:+29393799 | None:intergenic |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | 7_1:+29395929 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | 7_1:+29391688 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | 7_1:+29393824 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | 7_1:+29395954 | None:intergenic |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | 7_1:-29391694 | Msa1015650:CDS |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | 7_1:-29393830 | Msa1015650:CDS |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | 7_1:-29395960 | Msa1015650:CDS |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | 7_1:-29391871 | Msa1015650:intron |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | 7_1:-29394007 | Msa1015650:intron |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | 7_1:-29396137 | Msa1015650:CDS |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+29391754 | None:intergenic |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+29393890 | None:intergenic |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+29396020 | None:intergenic |
| ACCCCTACTTTCGAAGGACT+TGG | 0.483526 | 7_1:+29396135 | None:intergenic |
| CCCCTACTTTCGAAGGACTT+GGG | 0.544991 | 7_1:+29396136 | None:intergenic |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | 7_1:-29391872 | Msa1015650:intron |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | 7_1:-29394008 | Msa1015650:intron |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | 7_1:-29396138 | Msa1015650:CDS |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+29391735 | None:intergenic |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+29393871 | None:intergenic |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+29396001 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | 7_1:+29391863 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | 7_1:+29393999 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | 7_1:+29396129 | None:intergenic |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | 7_1:-29391870 | Msa1015650:intron |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | 7_1:-29394006 | Msa1015650:intron |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | 7_1:-29396136 | Msa1015650:CDS |
| TGGGACAATCAAAGCAAGCG+TGG | 0.684170 | 7_1:+29396155 | None:intergenic |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-29391810 | Msa1015650:CDS |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-29393946 | Msa1015650:CDS |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-29396076 | Msa1015650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATTTAATAA+GGG | + | chr7_1:29393279-29393298 | None:intergenic | 0.0% |
| !! | ATATATATATATATTTAATA+AGG | + | chr7_1:29393278-29393297 | None:intergenic | 0.0% |
| !! | TATATATATATATTTAATAA+GGG | + | chr7_1:29393279-29393298 | None:intergenic | 0.0% |
| !! | ATATATATATATATTTAATA+AGG | + | chr7_1:29393278-29393297 | None:intergenic | 0.0% |
| !!! | TTAATTTTAGTTAAATTTCT+TGG | - | chr7_1:29392052-29392071 | Msa1015650:intron | 10.0% |
| !! | ATAAAATTATAAACTCAAAA+TGG | - | chr7_1:29392386-29392405 | Msa1015650:intron | 10.0% |
| !!! | TTTCTATTTAGAATATTTTT+AGG | - | chr7_1:29392565-29392584 | Msa1015650:intron | 10.0% |
| !!! | TCTTTATTTATTTTAAATTG+AGG | - | chr7_1:29392594-29392613 | Msa1015650:intron | 10.0% |
| !!! | CTTTATTTATTTTAAATTGA+GGG | - | chr7_1:29392595-29392614 | Msa1015650:intron | 10.0% |
| !! | AATTCTATTAAATCATATTT+AGG | - | chr7_1:29393352-29393371 | Msa1015650:intron | 10.0% |
| !! | ATTCTATTAAATCATATTTA+GGG | - | chr7_1:29393353-29393372 | Msa1015650:intron | 10.0% |
| !!! | TTAATTTTAGTTAAATTTCT+TGG | - | chr7_1:29392052-29392071 | Msa1015650:intron | 10.0% |
| !! | ATAAAATTATAAACTCAAAA+TGG | - | chr7_1:29392386-29392405 | Msa1015650:intron | 10.0% |
| !!! | TTTCTATTTAGAATATTTTT+AGG | - | chr7_1:29392565-29392584 | Msa1015650:intron | 10.0% |
| !!! | TCTTTATTTATTTTAAATTG+AGG | - | chr7_1:29392594-29392613 | Msa1015650:intron | 10.0% |
| !!! | CTTTATTTATTTTAAATTGA+GGG | - | chr7_1:29392595-29392614 | Msa1015650:intron | 10.0% |
| !! | TTATGTATAAAAAAAAATGA+GGG | - | chr7_1:29394788-29394807 | Msa1015650:intron | 10.0% |
| !! | AATTCTATTAAATCATATTT+AGG | - | chr7_1:29393352-29393371 | Msa1015650:intron | 10.0% |
| !! | ATTCTATTAAATCATATTTA+GGG | - | chr7_1:29393353-29393372 | Msa1015650:intron | 10.0% |
| !! | ATATACTATAAACTGAAATA+TGG | + | chr7_1:29391903-29391922 | None:intergenic | 15.0% |
| !!! | TATGAGTATTTTTTTCAAAA+GGG | + | chr7_1:29392499-29392518 | None:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTCAAA+AGG | + | chr7_1:29392500-29392519 | None:intergenic | 15.0% |
| !! | TGTTATGTATAAAAAAAATG+AGG | - | chr7_1:29392656-29392675 | Msa1015650:intron | 15.0% |
| !! | GTTATGTATAAAAAAAATGA+GGG | - | chr7_1:29392657-29392676 | Msa1015650:intron | 15.0% |
| !! | ATATACTATAAACTGAAATA+TGG | + | chr7_1:29391903-29391922 | None:intergenic | 15.0% |
| !!! | TATGAGTATTTTTTTCAAAA+GGG | + | chr7_1:29392499-29392518 | None:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTCAAA+AGG | + | chr7_1:29392500-29392519 | None:intergenic | 15.0% |
| !! | GTTATGTATAAAAAAAAATG+AGG | - | chr7_1:29394787-29394806 | Msa1015650:intron | 15.0% |
| !! | TATTATAATTCTTGCATGTA+TGG | - | chr7_1:29392008-29392027 | Msa1015650:intron | 20.0% |
| !!! | TTTTAATTATGTATGAGAGT+AGG | - | chr7_1:29392094-29392113 | Msa1015650:intron | 20.0% |
| !! | TGTGAATAATAAACTACAAA+AGG | + | chr7_1:29392196-29392215 | None:intergenic | 20.0% |
| !!! | TATATGTGATGCTAAATTTT+AGG | + | chr7_1:29393217-29393236 | None:intergenic | 20.0% |
| !! | TATTATAATTCTTGCATGTA+TGG | - | chr7_1:29392008-29392027 | Msa1015650:intron | 20.0% |
| !!! | TTTTAATTATGTATGAGAGT+AGG | - | chr7_1:29392094-29392113 | Msa1015650:intron | 20.0% |
| !! | TGTGAATAATAAACTACAAA+AGG | + | chr7_1:29392196-29392215 | None:intergenic | 20.0% |
| !!! | TATATGTGATGCTAAATTTT+AGG | + | chr7_1:29393217-29393236 | None:intergenic | 20.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:29391855-29391874 | None:intergenic | 25.0% |
| !! | TTTGTCGACTATATATTCTT+AGG | - | chr7_1:29391971-29391990 | Msa1015650:intron | 25.0% |
| ! | AGGATGAAATATTCTATTAC+AGG | - | chr7_1:29392114-29392133 | Msa1015650:intron | 25.0% |
| ! | AACATAATTAAAAGCTTACG+AGG | - | chr7_1:29392297-29392316 | Msa1015650:intron | 25.0% |
| ! | GCAACAAAAACTATGAAATA+AGG | - | chr7_1:29393593-29393612 | Msa1015650:intron | 25.0% |
| ! | TTATTCAACAGTATATCCAT+GGG | + | chr7_1:29393655-29393674 | None:intergenic | 25.0% |
| ! | ATTATTCAACAGTATATCCA+TGG | + | chr7_1:29393656-29393675 | None:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:29391855-29391874 | None:intergenic | 25.0% |
| !! | TTTGTCGACTATATATTCTT+AGG | - | chr7_1:29391971-29391990 | Msa1015650:intron | 25.0% |
| ! | AGGATGAAATATTCTATTAC+AGG | - | chr7_1:29392114-29392133 | Msa1015650:intron | 25.0% |
| ! | AACATAATTAAAAGCTTACG+AGG | - | chr7_1:29392297-29392316 | Msa1015650:intron | 25.0% |
| ! | AATTCCATTGTTTACTTGTA+GGG | - | chr7_1:29395279-29395298 | Msa1015650:intron | 25.0% |
| ! | GCAACAAAAACTATGAAATA+AGG | - | chr7_1:29393593-29393612 | Msa1015650:intron | 25.0% |
| ! | TTATTCAACAGTATATCCAT+GGG | + | chr7_1:29393655-29393674 | None:intergenic | 25.0% |
| ! | ATTATTCAACAGTATATCCA+TGG | + | chr7_1:29393656-29393675 | None:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:29391855-29391874 | None:intergenic | 25.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | chr7_1:29391731-29391750 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | chr7_1:29391869-29391888 | Msa1015650:intron | 30.0% | |
| TAGTTTATTATTCACAGCTC+CGG | - | chr7_1:29392200-29392219 | Msa1015650:intron | 30.0% | |
| ATTGACAGCATATTAGAGTA+GGG | + | chr7_1:29392822-29392841 | None:intergenic | 30.0% | |
| AATTGACAGCATATTAGAGT+AGG | + | chr7_1:29392823-29392842 | None:intergenic | 30.0% | |
| AATTCCATTGTCTACTTGTA+GGG | - | chr7_1:29393147-29393166 | Msa1015650:intron | 30.0% | |
| !!! | AGCTAAGTTTTGGGTTTAAA+TGG | + | chr7_1:29393176-29393195 | None:intergenic | 30.0% |
| !! | TGTGATGCTAAATTTTAGGT+GGG | + | chr7_1:29393213-29393232 | None:intergenic | 30.0% |
| ! | ATGTGATGCTAAATTTTAGG+TGG | + | chr7_1:29393214-29393233 | None:intergenic | 30.0% |
| !! | TAAATTTTGTTGTGAACCCA+TGG | - | chr7_1:29393636-29393655 | Msa1015650:intron | 30.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | chr7_1:29391731-29391750 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | chr7_1:29391869-29391888 | Msa1015650:intron | 30.0% | |
| TAGTTTATTATTCACAGCTC+CGG | - | chr7_1:29392200-29392219 | Msa1015650:intron | 30.0% | |
| ATTGACAGCATATTAGAGTA+GGG | + | chr7_1:29392822-29392841 | None:intergenic | 30.0% | |
| AATTGACAGCATATTAGAGT+AGG | + | chr7_1:29392823-29392842 | None:intergenic | 30.0% | |
| CTACAAGTAAACAATGGAAT+TGG | + | chr7_1:29395280-29395299 | None:intergenic | 30.0% | |
| CAATTCCATTGTTTACTTGT+AGG | - | chr7_1:29395278-29395297 | Msa1015650:intron | 30.0% | |
| !!! | AGCTAAGTTTTGGGTTTAAA+TGG | + | chr7_1:29393176-29393195 | None:intergenic | 30.0% |
| !! | TGTGATGCTAAATTTTAGGT+GGG | + | chr7_1:29393213-29393232 | None:intergenic | 30.0% |
| ! | ATGTGATGCTAAATTTTAGG+TGG | + | chr7_1:29393214-29393233 | None:intergenic | 30.0% |
| !! | TAAATTTTGTTGTGAACCCA+TGG | - | chr7_1:29393636-29393655 | Msa1015650:intron | 30.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | chr7_1:29391731-29391750 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | chr7_1:29391869-29391888 | Msa1015650:intron | 30.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | chr7_1:29391840-29391859 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | chr7_1:29391878-29391897 | None:intergenic | 35.0% | |
| !!! | TTTGGATGTCATTTTGCTCT+TGG | + | chr7_1:29392774-29392793 | None:intergenic | 35.0% |
| ! | GTAGTTGGACACAATTCTTT+TGG | + | chr7_1:29392792-29392811 | None:intergenic | 35.0% |
| ! | AAATTAGTTGACTCTCGAAC+TGG | + | chr7_1:29393118-29393137 | None:intergenic | 35.0% |
| CTACAAGTAGACAATGGAAT+TGG | + | chr7_1:29393148-29393167 | None:intergenic | 35.0% | |
| CAATTCCATTGTCTACTTGT+AGG | - | chr7_1:29393146-29393165 | Msa1015650:intron | 35.0% | |
| ! | TCCATACAGAGCTAAGTTTT+GGG | + | chr7_1:29393185-29393204 | None:intergenic | 35.0% |
| AAATAGTGCATTAGAGTGTG+AGG | + | chr7_1:29393717-29393736 | None:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | chr7_1:29391840-29391859 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | chr7_1:29391878-29391897 | None:intergenic | 35.0% | |
| ACGAGGATTAAAAGCTTACA+AGG | - | chr7_1:29394444-29394463 | Msa1015650:intron | 35.0% | |
| !!! | TTTGGATGTCATTTTGCTCT+TGG | + | chr7_1:29392774-29392793 | None:intergenic | 35.0% |
| ! | GTAGTTGGACACAATTCTTT+TGG | + | chr7_1:29392792-29392811 | None:intergenic | 35.0% |
| ! | AAATTAGTTGACTCTCGAAC+TGG | + | chr7_1:29393118-29393137 | None:intergenic | 35.0% |
| ! | TCCATACAGAGCTAAGTTTT+GGG | + | chr7_1:29393185-29393204 | None:intergenic | 35.0% |
| AAATAGTGCATTAGAGTGTG+AGG | + | chr7_1:29393717-29393736 | None:intergenic | 35.0% | |
| GAACATTGTGGATGATTCTT+AGG | + | chr7_1:29395921-29395940 | None:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | chr7_1:29391840-29391859 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | chr7_1:29391878-29391897 | None:intergenic | 35.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | chr7_1:29391715-29391734 | Msa1015650:intron | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | chr7_1:29391753-29391772 | Msa1015650:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:29391812-29391831 | None:intergenic | 40.0% | |
| GAAGCATGAACGAACTTCAT+AGG | - | chr7_1:29392270-29392289 | Msa1015650:intron | 40.0% | |
| ACGAGGATTAAAAGCTTACG+AGG | - | chr7_1:29392314-29392333 | Msa1015650:intron | 40.0% | |
| GAAAACCATTGAGTCTGCTA+GGG | + | chr7_1:29392357-29392376 | None:intergenic | 40.0% | |
| TGAAAACCATTGAGTCTGCT+AGG | + | chr7_1:29392358-29392377 | None:intergenic | 40.0% | |
| AGAATTGTGTCCAACTACGT+TGG | - | chr7_1:29392794-29392813 | Msa1015650:intron | 40.0% | |
| GAATTGTGTCCAACTACGTT+GGG | - | chr7_1:29392795-29392814 | Msa1015650:intron | 40.0% | |
| !! | ACCCAAAACTTAGCTCTGTA+TGG | - | chr7_1:29393181-29393200 | Msa1015650:intron | 40.0% |
| ! | GTCCATACAGAGCTAAGTTT+TGG | + | chr7_1:29393186-29393205 | None:intergenic | 40.0% |
| GAACATCGTGGATGATTCTT+AGG | + | chr7_1:29393785-29393804 | None:intergenic | 40.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | chr7_1:29391715-29391734 | Msa1015650:intron | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | chr7_1:29391753-29391772 | Msa1015650:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:29391812-29391831 | None:intergenic | 40.0% | |
| GAAGCATGAACGAACTTCAT+AGG | - | chr7_1:29392270-29392289 | Msa1015650:intron | 40.0% | |
| GAAAACCATTGAGTCTGCTA+GGG | + | chr7_1:29392357-29392376 | None:intergenic | 40.0% | |
| TGAAAACCATTGAGTCTGCT+AGG | + | chr7_1:29392358-29392377 | None:intergenic | 40.0% | |
| AGAATTGTGTCCAACTACGT+TGG | - | chr7_1:29392794-29392813 | Msa1015650:intron | 40.0% | |
| GAATTGTGTCCAACTACGTT+GGG | - | chr7_1:29392795-29392814 | Msa1015650:intron | 40.0% | |
| GAGACCCTACAAGTAAACAA+TGG | + | chr7_1:29395286-29395305 | None:intergenic | 40.0% | |
| !! | ACCCAAAACTTAGCTCTGTA+TGG | - | chr7_1:29393181-29393200 | Msa1015650:intron | 40.0% |
| ! | GTCCATACAGAGCTAAGTTT+TGG | + | chr7_1:29393186-29393205 | None:intergenic | 40.0% |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | chr7_1:29391715-29391734 | Msa1015650:intron | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | chr7_1:29391753-29391772 | Msa1015650:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:29391812-29391831 | None:intergenic | 40.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | chr7_1:29391692-29391711 | Msa1015650:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:29391831-29391850 | None:intergenic | 45.0% | |
| CCGAATACATCACACATGAC+CGG | + | chr7_1:29392222-29392241 | None:intergenic | 45.0% | |
| CCGGTCATGTGTGATGTATT+CGG | - | chr7_1:29392219-29392238 | Msa1015650:intron | 45.0% | |
| ACAAACCCTAGCAGACTCAA+TGG | - | chr7_1:29392349-29392368 | Msa1015650:intron | 45.0% | |
| GAGACCCTACAAGTAGACAA+TGG | + | chr7_1:29393154-29393173 | None:intergenic | 45.0% | |
| AGTGCATTAGAGTGTGAGGT+AGG | + | chr7_1:29393713-29393732 | None:intergenic | 45.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | chr7_1:29391692-29391711 | Msa1015650:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:29391831-29391850 | None:intergenic | 45.0% | |
| CCGAATACATCACACATGAC+CGG | + | chr7_1:29392222-29392241 | None:intergenic | 45.0% | |
| CCGGTCATGTGTGATGTATT+CGG | - | chr7_1:29392219-29392238 | Msa1015650:intron | 45.0% | |
| ACAAACCCTAGCAGACTCAA+TGG | - | chr7_1:29392349-29392368 | Msa1015650:intron | 45.0% | |
| AGTGCATTAGAGTGTGAGGT+AGG | + | chr7_1:29393713-29393732 | None:intergenic | 45.0% | |
| AAAGCAAGCGTGGAACATTG+TGG | + | chr7_1:29395933-29395952 | None:intergenic | 45.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | chr7_1:29391692-29391711 | Msa1015650:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:29391831-29391850 | None:intergenic | 45.0% | |
| !!! | TTATTAATTGAATATTTTAA+TGG | - | chr7_1:29392418-29392437 | Msa1015650:intron | 5.0% |
| !! | TCATAAATATTATTAAAAAA+AGG | - | chr7_1:29392845-29392864 | Msa1015650:intron | 5.0% |
| !!! | ATTTATTTATTTTTATTTGA+AGG | - | chr7_1:29392936-29392955 | Msa1015650:intron | 5.0% |
| !!! | TTTTTTTAAAAAAAAAAACT+TGG | - | chr7_1:29393089-29393108 | Msa1015650:intron | 5.0% |
| !!! | TTATTAATTGAATATTTTAA+TGG | - | chr7_1:29392418-29392437 | Msa1015650:intron | 5.0% |
| !! | TCATAAATATTATTAAAAAA+AGG | - | chr7_1:29392845-29392864 | Msa1015650:intron | 5.0% |
| !!! | ATTTATATATTTTTATTTGA+AGG | - | chr7_1:29395067-29395086 | Msa1015650:intron | 5.0% |
| !!! | TTTTTTTTAAAAAAAAAACT+TGG | - | chr7_1:29395221-29395240 | Msa1015650:intron | 5.0% |
| TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:29391677-29391696 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | chr7_1:29391691-29391710 | Msa1015650:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | chr7_1:29391696-29391715 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | chr7_1:29391693-29391712 | Msa1015650:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | chr7_1:29391697-29391716 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | chr7_1:29391703-29391722 | None:intergenic | 50.0% |
| AAAGCAAGCGTGGAACATCG+TGG | + | chr7_1:29393797-29393816 | None:intergenic | 50.0% | |
| TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:29391677-29391696 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | chr7_1:29391691-29391710 | Msa1015650:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | chr7_1:29391696-29391715 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | chr7_1:29391693-29391712 | Msa1015650:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | chr7_1:29391697-29391716 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | chr7_1:29391703-29391722 | None:intergenic | 50.0% |
| TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:29391677-29391696 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | chr7_1:29391691-29391710 | Msa1015650:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | chr7_1:29391696-29391715 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | chr7_1:29391693-29391712 | Msa1015650:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | chr7_1:29391697-29391716 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | chr7_1:29391703-29391722 | None:intergenic | 50.0% |
| GAGTAGGGTCCCAACGTAGT+TGG | + | chr7_1:29392807-29392826 | None:intergenic | 55.0% | |
| GAGTAGGGTCCCAACGTAGT+TGG | + | chr7_1:29392807-29392826 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 29391669 | 29396182 | 29391669 | ID=Msa1015650;Name=Msa1015650 |
| chr7_1 | mRNA | 29391669 | 29396182 | 29391669 | ID=Msa1015650-mRNA-1;Parent=Msa1015650;Name=Msa1015650-mRNA-1;_AED=0.29;_eAED=0.45;_QI=0|0|0|1|0|0|6|0|202 |
| chr7_1 | exon | 29396009 | 29396182 | 29396009 | ID=Msa1015650-mRNA-1:exon:6050;Parent=Msa1015650-mRNA-1 |
| chr7_1 | exon | 29395935 | 29395982 | 29395935 | ID=Msa1015650-mRNA-1:exon:6049;Parent=Msa1015650-mRNA-1 |
| chr7_1 | exon | 29393879 | 29394022 | 29393879 | ID=Msa1015650-mRNA-1:exon:6048;Parent=Msa1015650-mRNA-1 |
| chr7_1 | exon | 29393805 | 29393852 | 29393805 | ID=Msa1015650-mRNA-1:exon:6047;Parent=Msa1015650-mRNA-1 |
| chr7_1 | exon | 29391743 | 29391886 | 29391743 | ID=Msa1015650-mRNA-1:exon:6046;Parent=Msa1015650-mRNA-1 |
| chr7_1 | exon | 29391669 | 29391716 | 29391669 | ID=Msa1015650-mRNA-1:exon:6045;Parent=Msa1015650-mRNA-1 |
| chr7_1 | CDS | 29396009 | 29396182 | 29396009 | ID=Msa1015650-mRNA-1:cds;Parent=Msa1015650-mRNA-1 |
| chr7_1 | CDS | 29395935 | 29395982 | 29395935 | ID=Msa1015650-mRNA-1:cds;Parent=Msa1015650-mRNA-1 |
| chr7_1 | CDS | 29393879 | 29394022 | 29393879 | ID=Msa1015650-mRNA-1:cds;Parent=Msa1015650-mRNA-1 |
| chr7_1 | CDS | 29393805 | 29393852 | 29393805 | ID=Msa1015650-mRNA-1:cds;Parent=Msa1015650-mRNA-1 |
| chr7_1 | CDS | 29391743 | 29391886 | 29391743 | ID=Msa1015650-mRNA-1:cds;Parent=Msa1015650-mRNA-1 |
| chr7_1 | CDS | 29391669 | 29391716 | 29391669 | ID=Msa1015650-mRNA-1:cds;Parent=Msa1015650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
