Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015660 | KEH17097.1 | 68.182 | 110 | 14 | 1 | 75 | 184 | 11 | 99 | 1.98e-41 | 147 |
| Msa1015660 | KEH17097.1 | 68.333 | 120 | 17 | 1 | 1 | 120 | 1 | 99 | 1.54e-47 | 162 |
| Msa1015660 | KEH17097.1 | 82.000 | 50 | 9 | 0 | 139 | 188 | 11 | 60 | 1.48e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015660 | G7ZUP9 | 68.182 | 110 | 14 | 1 | 75 | 184 | 11 | 99 | 9.43e-42 | 147 |
| Msa1015660 | G7ZUP9 | 68.333 | 120 | 17 | 1 | 1 | 120 | 1 | 99 | 7.34e-48 | 162 |
| Msa1015660 | G7ZUP9 | 82.000 | 50 | 9 | 0 | 139 | 188 | 11 | 60 | 7.08e-20 | 91.3 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1015660 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | 7_1:-29411069 | Msa1015660:CDS |
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | 7_1:-29413611 | Msa1015660:CDS |
| GTGCTTTGAACGTCCATAAA+AGG | 0.292733 | 7_1:-29415747 | Msa1015660:CDS |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | 7_1:+29410884 | None:intergenic |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | 7_1:+29413426 | None:intergenic |
| ATATACTATAAACTGAAATA+TGG | 0.301575 | 7_1:+29415562 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | 7_1:+29410909 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | 7_1:+29413451 | None:intergenic |
| TGTTCTCCAGTATATCTTCT+TGG | 0.311912 | 7_1:+29415587 | None:intergenic |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | 7_1:-29410915 | Msa1015660:CDS |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | 7_1:-29413457 | Msa1015660:CDS |
| AATTCTCCAAGAAGATATAC+TGG | 0.369151 | 7_1:-29415593 | Msa1015660:CDS |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | 7_1:-29411092 | Msa1015660:intron |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | 7_1:-29413634 | Msa1015660:intron |
| TCCCAAGTCCTTCGAAAGTA+GGG | 0.449688 | 7_1:-29415770 | Msa1015660:CDS |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+29410975 | None:intergenic |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+29413517 | None:intergenic |
| GTGGTTGACATGTCTTCATA+TGG | 0.455172 | 7_1:+29415653 | None:intergenic |
| ACCCCTACTTTCGAAGGACT+TGG | 0.483526 | 7_1:+29415768 | None:intergenic |
| CCCCTACTTTCGAAGGACTT+GGG | 0.544991 | 7_1:+29415769 | None:intergenic |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | 7_1:-29411093 | Msa1015660:intron |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | 7_1:-29413635 | Msa1015660:intron |
| GTCCCAAGTCCTTCGAAAGT+AGG | 0.556450 | 7_1:-29415771 | Msa1015660:CDS |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+29410956 | None:intergenic |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+29413498 | None:intergenic |
| TTATGTACTTGCGGCTTCTG+TGG | 0.572456 | 7_1:+29415634 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | 7_1:+29411084 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | 7_1:+29413626 | None:intergenic |
| CAAAGCACCCCTACTTTCGA+AGG | 0.573103 | 7_1:+29415762 | None:intergenic |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | 7_1:-29411091 | Msa1015660:intron |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | 7_1:-29413633 | Msa1015660:intron |
| CCCAAGTCCTTCGAAAGTAG+GGG | 0.658544 | 7_1:-29415769 | Msa1015660:CDS |
| TGGGACAATCAAAGCAAGCG+TGG | 0.684170 | 7_1:+29415788 | None:intergenic |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-29411031 | Msa1015660:CDS |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-29413573 | Msa1015660:CDS |
| AAAACACGTTGCGATAGATG+TGG | 0.685090 | 7_1:-29415709 | Msa1015660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATAATAA+GGG | + | chr7_1:29412464-29412483 | None:intergenic | 0.0% |
| !! | ATATATATATATATATAATA+AGG | + | chr7_1:29412465-29412484 | None:intergenic | 0.0% |
| !! | TATATATATATATTTAATAA+GGG | + | chr7_1:29412508-29412527 | None:intergenic | 0.0% |
| !! | ATATATATATATATTTAATA+AGG | + | chr7_1:29412507-29412526 | None:intergenic | 0.0% |
| !!! | TTAATTTTAGTTAAATTTCT+TGG | - | chr7_1:29411273-29411292 | Msa1015660:intron | 10.0% |
| !! | ATAAAATTATAAACTCAAAA+TGG | - | chr7_1:29411607-29411626 | Msa1015660:intron | 10.0% |
| !!! | TTTCTATTTAGAATATTTTT+AGG | - | chr7_1:29411786-29411805 | Msa1015660:intron | 10.0% |
| !!! | TCTTTATTTATTTTAAATTG+AGG | - | chr7_1:29411815-29411834 | Msa1015660:intron | 10.0% |
| !!! | CTTTATTTATTTTAAATTGA+GGG | - | chr7_1:29411816-29411835 | Msa1015660:intron | 10.0% |
| !! | AATTCTATTAAATCATATTT+AGG | - | chr7_1:29412581-29412600 | Msa1015660:intron | 10.0% |
| !! | ATTCTATTAAATCATATTTA+GGG | - | chr7_1:29412582-29412601 | Msa1015660:intron | 10.0% |
| !!! | TTAATTTTAGTTAAATTTCT+TGG | - | chr7_1:29411273-29411292 | Msa1015660:intron | 10.0% |
| !! | ATAAAATTATAAACTCAAAA+TGG | - | chr7_1:29411607-29411626 | Msa1015660:intron | 10.0% |
| !!! | TTTCTATTTAGAATATTTTT+AGG | - | chr7_1:29411786-29411805 | Msa1015660:intron | 10.0% |
| !!! | TCTTTATTTATTTTAAATTG+AGG | - | chr7_1:29411815-29411834 | Msa1015660:intron | 10.0% |
| !!! | CTTTATTTATTTTAAATTGA+GGG | - | chr7_1:29411816-29411835 | Msa1015660:intron | 10.0% |
| !! | TTATGTATAAAAAAAAATGA+GGG | - | chr7_1:29414428-29414447 | Msa1015660:intron | 10.0% |
| !! | AATTCTATTAAATCATATTT+AGG | - | chr7_1:29412581-29412600 | Msa1015660:intron | 10.0% |
| !! | ATTCTATTAAATCATATTTA+GGG | - | chr7_1:29412582-29412601 | Msa1015660:intron | 10.0% |
| !! | ATATACTATAAACTGAAATA+TGG | + | chr7_1:29411124-29411143 | None:intergenic | 15.0% |
| !!! | TATGAGTATTTTTTTCAAAA+GGG | + | chr7_1:29411720-29411739 | None:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTCAAA+AGG | + | chr7_1:29411721-29411740 | None:intergenic | 15.0% |
| !! | TGTTATGTATAAAAAAAATG+AGG | - | chr7_1:29411877-29411896 | Msa1015660:intron | 15.0% |
| !! | GTTATGTATAAAAAAAATGA+GGG | - | chr7_1:29411878-29411897 | Msa1015660:intron | 15.0% |
| !! | ATATACTATAAACTGAAATA+TGG | + | chr7_1:29411124-29411143 | None:intergenic | 15.0% |
| !!! | TATGAGTATTTTTTTCAAAA+GGG | + | chr7_1:29411720-29411739 | None:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTCAAA+AGG | + | chr7_1:29411721-29411740 | None:intergenic | 15.0% |
| !! | GTTATGTATAAAAAAAAATG+AGG | - | chr7_1:29414427-29414446 | Msa1015660:intron | 15.0% |
| !! | TATTATAATTCTTGCATGTA+TGG | - | chr7_1:29411229-29411248 | Msa1015660:intron | 20.0% |
| !!! | TTTTAATTATGTATGAGAGT+AGG | - | chr7_1:29411315-29411334 | Msa1015660:intron | 20.0% |
| !! | TGTGAATAATAAACTACAAA+AGG | + | chr7_1:29411417-29411436 | None:intergenic | 20.0% |
| !!! | TATATGTGATGCTAAATTTT+AGG | + | chr7_1:29412438-29412457 | None:intergenic | 20.0% |
| !!! | TTTTAATTATGTATGAGAGT+AGG | - | chr7_1:29411315-29411334 | Msa1015660:intron | 20.0% |
| !! | TGTGAATAATAAACTACAAA+AGG | + | chr7_1:29411417-29411436 | None:intergenic | 20.0% |
| !!! | TATATGTGATGCTAAATTTT+AGG | + | chr7_1:29412438-29412457 | None:intergenic | 20.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:29411076-29411095 | None:intergenic | 25.0% |
| !! | TTTGTCGACTATATATTCTT+AGG | - | chr7_1:29411192-29411211 | Msa1015660:intron | 25.0% |
| ! | AGGATGAAATATTCTATTAC+AGG | - | chr7_1:29411335-29411354 | Msa1015660:intron | 25.0% |
| ! | AACATAATTAAAAGCTTACG+AGG | - | chr7_1:29411518-29411537 | Msa1015660:intron | 25.0% |
| ! | GCAACAAAAACTATGAAATA+AGG | - | chr7_1:29412820-29412839 | Msa1015660:intron | 25.0% |
| ! | TTATTCAACAGTATATCCAT+GGG | + | chr7_1:29412882-29412901 | None:intergenic | 25.0% |
| ! | ATTATTCAACAGTATATCCA+TGG | + | chr7_1:29412883-29412902 | None:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:29411076-29411095 | None:intergenic | 25.0% |
| !! | TTTGTCGACTATATATTCTT+AGG | - | chr7_1:29411192-29411211 | Msa1015660:intron | 25.0% |
| ! | AGGATGAAATATTCTATTAC+AGG | - | chr7_1:29411335-29411354 | Msa1015660:intron | 25.0% |
| ! | AACATAATTAAAAGCTTACG+AGG | - | chr7_1:29411518-29411537 | Msa1015660:intron | 25.0% |
| ! | GCAACAAAAACTATGAAATA+AGG | - | chr7_1:29412820-29412839 | Msa1015660:intron | 25.0% |
| ! | TTATTCAACAGTATATCCAT+GGG | + | chr7_1:29412882-29412901 | None:intergenic | 25.0% |
| ! | ATTATTCAACAGTATATCCA+TGG | + | chr7_1:29412883-29412902 | None:intergenic | 25.0% |
| ! | AGAATTCTTCAAATTCATTG+AGG | + | chr7_1:29411076-29411095 | None:intergenic | 25.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | chr7_1:29410952-29410971 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | chr7_1:29411090-29411109 | Msa1015660:intron | 30.0% | |
| TAGTTTATTATTCACAGCTC+CGG | - | chr7_1:29411421-29411440 | Msa1015660:intron | 30.0% | |
| ATTGACAGCATATTAGAGTA+GGG | + | chr7_1:29412043-29412062 | None:intergenic | 30.0% | |
| AATTGACAGCATATTAGAGT+AGG | + | chr7_1:29412044-29412063 | None:intergenic | 30.0% | |
| AATTCCATTGTCTACTTGTA+GGG | - | chr7_1:29412368-29412387 | Msa1015660:intron | 30.0% | |
| !!! | AGCTAAGTTTTGGGTTTAAA+TGG | + | chr7_1:29412397-29412416 | None:intergenic | 30.0% |
| !! | TGTGATGCTAAATTTTAGGT+GGG | + | chr7_1:29412434-29412453 | None:intergenic | 30.0% |
| ! | ATGTGATGCTAAATTTTAGG+TGG | + | chr7_1:29412435-29412454 | None:intergenic | 30.0% |
| !! | TAAATTTTGTTGTGAACCCA+TGG | - | chr7_1:29412863-29412882 | Msa1015660:intron | 30.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | chr7_1:29410952-29410971 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | chr7_1:29411090-29411109 | Msa1015660:intron | 30.0% | |
| TAGTTTATTATTCACAGCTC+CGG | - | chr7_1:29411421-29411440 | Msa1015660:intron | 30.0% | |
| ! | AACAAGATGCATCTTCTTTT+CGG | + | chr7_1:29413814-29413833 | None:intergenic | 30.0% |
| AAGATGCATCTTGTTGATAT+GGG | - | chr7_1:29413819-29413838 | Msa1015660:intron | 30.0% | |
| GAAGGCTTATAAGAATTGTT+AGG | + | chr7_1:29413850-29413869 | None:intergenic | 30.0% | |
| ATTGACAGCTTATTAGAGTA+GGG | + | chr7_1:29414593-29414612 | None:intergenic | 30.0% | |
| AATTGACAGCTTATTAGAGT+AGG | + | chr7_1:29414594-29414613 | None:intergenic | 30.0% | |
| AATTCCATTGTCTACTTGTA+GGG | - | chr7_1:29412368-29412387 | Msa1015660:intron | 30.0% | |
| !!! | AGCTAAGTTTTGGGTTTAAA+TGG | + | chr7_1:29412397-29412416 | None:intergenic | 30.0% |
| !! | TGTGATGCTAAATTTTAGGT+GGG | + | chr7_1:29412434-29412453 | None:intergenic | 30.0% |
| ! | ATGTGATGCTAAATTTTAGG+TGG | + | chr7_1:29412435-29412454 | None:intergenic | 30.0% |
| !! | TAAATTTTGTTGTGAACCCA+TGG | - | chr7_1:29412863-29412882 | Msa1015660:intron | 30.0% |
| ! | CTTCACATTCAAACCTTTTA+TGG | + | chr7_1:29410952-29410971 | None:intergenic | 30.0% |
| AATTCTCCAAGAAGATATAC+TGG | - | chr7_1:29411090-29411109 | Msa1015660:intron | 30.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | chr7_1:29411061-29411080 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | chr7_1:29411099-29411118 | None:intergenic | 35.0% | |
| !!! | TTTGGATGTCATTTTGCTCT+TGG | + | chr7_1:29411995-29412014 | None:intergenic | 35.0% |
| ! | GTAGTTGGACACAATTCTTT+TGG | + | chr7_1:29412013-29412032 | None:intergenic | 35.0% |
| ! | AAATTAGTTGACTCTCGAAC+TGG | + | chr7_1:29412339-29412358 | None:intergenic | 35.0% |
| CTACAAGTAGACAATGGAAT+TGG | + | chr7_1:29412369-29412388 | None:intergenic | 35.0% | |
| CAATTCCATTGTCTACTTGT+AGG | - | chr7_1:29412367-29412386 | Msa1015660:intron | 35.0% | |
| ! | TCCATACAGAGCTAAGTTTT+GGG | + | chr7_1:29412406-29412425 | None:intergenic | 35.0% |
| AAATAGTGCATTAGAGTGTG+AGG | + | chr7_1:29412944-29412963 | None:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | chr7_1:29411061-29411080 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | chr7_1:29411099-29411118 | None:intergenic | 35.0% | |
| GAAGATGCATCTTGTTGATA+TGG | - | chr7_1:29413818-29413837 | Msa1015660:intron | 35.0% | |
| !!! | TTTGGATGTCATTTTGCTCT+TGG | + | chr7_1:29411995-29412014 | None:intergenic | 35.0% |
| ! | GTAGTTGGACACAATTCTTT+TGG | + | chr7_1:29412013-29412032 | None:intergenic | 35.0% |
| ! | AAATTAGTTGACTCTCGAAC+TGG | + | chr7_1:29412339-29412358 | None:intergenic | 35.0% |
| CTACAAGTAGACAATGGAAT+TGG | + | chr7_1:29412369-29412388 | None:intergenic | 35.0% | |
| CAATTCCATTGTCTACTTGT+AGG | - | chr7_1:29412367-29412386 | Msa1015660:intron | 35.0% | |
| ! | TCCATACAGAGCTAAGTTTT+GGG | + | chr7_1:29412406-29412425 | None:intergenic | 35.0% |
| AAATAGTGCATTAGAGTGTG+AGG | + | chr7_1:29412944-29412963 | None:intergenic | 35.0% | |
| CATTGAGGATTATGTACTTG+CGG | + | chr7_1:29411061-29411080 | None:intergenic | 35.0% | |
| TGTTCTCCAGTATATCTTCT+TGG | + | chr7_1:29411099-29411118 | None:intergenic | 35.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | chr7_1:29410936-29410955 | Msa1015660:intron | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | chr7_1:29410974-29410993 | Msa1015660:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:29411033-29411052 | None:intergenic | 40.0% | |
| GAAGCATGAACGAACTTCAT+AGG | - | chr7_1:29411491-29411510 | Msa1015660:intron | 40.0% | |
| ACGAGGATTAAAAGCTTACG+AGG | - | chr7_1:29411535-29411554 | Msa1015660:intron | 40.0% | |
| GAAAACCATTGAGTCTGCTA+GGG | + | chr7_1:29411578-29411597 | None:intergenic | 40.0% | |
| TGAAAACCATTGAGTCTGCT+AGG | + | chr7_1:29411579-29411598 | None:intergenic | 40.0% | |
| AGAATTGTGTCCAACTACGT+TGG | - | chr7_1:29412015-29412034 | Msa1015660:intron | 40.0% | |
| GAATTGTGTCCAACTACGTT+GGG | - | chr7_1:29412016-29412035 | Msa1015660:intron | 40.0% | |
| !! | ACCCAAAACTTAGCTCTGTA+TGG | - | chr7_1:29412402-29412421 | Msa1015660:intron | 40.0% |
| ! | GTCCATACAGAGCTAAGTTT+TGG | + | chr7_1:29412407-29412426 | None:intergenic | 40.0% |
| GAACATCGTGGATGATTCTT+AGG | + | chr7_1:29413012-29413031 | None:intergenic | 40.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | chr7_1:29410936-29410955 | Msa1015660:intron | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | chr7_1:29410974-29410993 | Msa1015660:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:29411033-29411052 | None:intergenic | 40.0% | |
| !! | AAAGACTCGTGTTGGTTTGT+GGG | + | chr7_1:29413675-29413694 | None:intergenic | 40.0% |
| !! | AAAAGACTCGTGTTGGTTTG+TGG | + | chr7_1:29413676-29413695 | None:intergenic | 40.0% |
| GCTTAACTGTGGAGTTCTTA+TGG | - | chr7_1:29413779-29413798 | Msa1015660:intron | 40.0% | |
| ACTGTGGAGTTCTTATGGAA+TGG | - | chr7_1:29413784-29413803 | Msa1015660:intron | 40.0% | |
| CTGTGGAGTTCTTATGGAAT+GGG | - | chr7_1:29413785-29413804 | Msa1015660:intron | 40.0% | |
| TAAGAGGAACCGAATCACAT+CGG | + | chr7_1:29413922-29413941 | None:intergenic | 40.0% | |
| TTCGGTTCCTCTTATTAACG+TGG | - | chr7_1:29413928-29413947 | Msa1015660:intron | 40.0% | |
| TCGGTTCCTCTTATTAACGT+GGG | - | chr7_1:29413929-29413948 | Msa1015660:intron | 40.0% | |
| CAAGCATGAACGAACTTCAT+AGG | - | chr7_1:29414040-29414059 | Msa1015660:intron | 40.0% | |
| ACGAGGATTAAAAGCTTACG+AGG | - | chr7_1:29411535-29411554 | Msa1015660:intron | 40.0% | |
| GAAAACCATTGAGTCTGCTA+GGG | + | chr7_1:29411578-29411597 | None:intergenic | 40.0% | |
| TGAAAACCATTGAGTCTGCT+AGG | + | chr7_1:29411579-29411598 | None:intergenic | 40.0% | |
| AGAATTGTGTCCAACTACGT+TGG | - | chr7_1:29412015-29412034 | Msa1015660:intron | 40.0% | |
| GAATTGTGTCCAACTACGTT+GGG | - | chr7_1:29412016-29412035 | Msa1015660:intron | 40.0% | |
| !! | ACCCAAAACTTAGCTCTGTA+TGG | - | chr7_1:29412402-29412421 | Msa1015660:intron | 40.0% |
| ! | GTCCATACAGAGCTAAGTTT+TGG | + | chr7_1:29412407-29412426 | None:intergenic | 40.0% |
| GAACATCGTGGATGATTCTT+AGG | + | chr7_1:29413012-29413031 | None:intergenic | 40.0% | |
| ! | GTGCTTTGAACGTCCATAAA+AGG | - | chr7_1:29410936-29410955 | Msa1015660:intron | 40.0% |
| AAAACACGTTGCGATAGATG+TGG | - | chr7_1:29410974-29410993 | Msa1015660:CDS | 40.0% | |
| GTGGTTGACATGTCTTCATA+TGG | + | chr7_1:29411033-29411052 | None:intergenic | 40.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | chr7_1:29410913-29410932 | Msa1015660:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:29411052-29411071 | None:intergenic | 45.0% | |
| CCGAATACATCACACATGAC+CGG | + | chr7_1:29411443-29411462 | None:intergenic | 45.0% | |
| CCGGTCATGTGTGATGTATT+CGG | - | chr7_1:29411440-29411459 | Msa1015660:intron | 45.0% | |
| ACAAACCCTAGCAGACTCAA+TGG | - | chr7_1:29411570-29411589 | Msa1015660:intron | 45.0% | |
| GAGACCCTACAAGTAGACAA+TGG | + | chr7_1:29412375-29412394 | None:intergenic | 45.0% | |
| AGTGCATTAGAGTGTGAGGT+AGG | + | chr7_1:29412940-29412959 | None:intergenic | 45.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | chr7_1:29410913-29410932 | Msa1015660:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:29411052-29411071 | None:intergenic | 45.0% | |
| CCGAATACATCACACATGAC+CGG | + | chr7_1:29411443-29411462 | None:intergenic | 45.0% | |
| CCGGTCATGTGTGATGTATT+CGG | - | chr7_1:29411440-29411459 | Msa1015660:intron | 45.0% | |
| TAACATCCCAGACTGCTTTC+AGG | - | chr7_1:29413636-29413655 | Msa1015660:intron | 45.0% | |
| !! | TGTTGGTTTGTGGGGTTAGT+CGG | + | chr7_1:29413666-29413685 | None:intergenic | 45.0% |
| !! | AAGACTCGTGTTGGTTTGTG+GGG | + | chr7_1:29413674-29413693 | None:intergenic | 45.0% |
| CATGCTGAAAAGACTCGTGT+TGG | + | chr7_1:29413683-29413702 | None:intergenic | 45.0% | |
| ATGCTTACCGGGAAACTTCT+CGG | - | chr7_1:29413719-29413738 | Msa1015660:intron | 45.0% | |
| GCTTGGAGTAGTACTAGGAT+GGG | + | chr7_1:29413752-29413771 | None:intergenic | 45.0% | |
| GTATGGGACTACATGGTTGA+AGG | + | chr7_1:29413872-29413891 | None:intergenic | 45.0% | |
| CATGTAGTCCCATACCTACA+CGG | - | chr7_1:29413877-29413896 | Msa1015660:intron | 45.0% | |
| CGAATCACATCGGAATGAGA+GGG | + | chr7_1:29413912-29413931 | None:intergenic | 45.0% | |
| CCTCTCATTCCGATGTGATT+CGG | - | chr7_1:29413910-29413929 | Msa1015660:intron | 45.0% | |
| CGGTTCCTCTTATTAACGTG+GGG | - | chr7_1:29413930-29413949 | Msa1015660:intron | 45.0% | |
| GATGACCCCACGTTAATAAG+AGG | + | chr7_1:29413938-29413957 | None:intergenic | 45.0% | |
| TTAACGTGGGGTCATCCTTA+CGG | - | chr7_1:29413942-29413961 | Msa1015660:intron | 45.0% | |
| AACCTTTCGTATCCAACTGG+CGG | - | chr7_1:29413989-29414008 | Msa1015660:intron | 45.0% | |
| GATATCGAAAGCCACGTTGT+GGG | - | chr7_1:29414012-29414031 | Msa1015660:intron | 45.0% | |
| ACAAACCCTAGCAGACTCAA+TGG | - | chr7_1:29411570-29411589 | Msa1015660:intron | 45.0% | |
| GAGACCCTACAAGTAGACAA+TGG | + | chr7_1:29412375-29412394 | None:intergenic | 45.0% | |
| AGTGCATTAGAGTGTGAGGT+AGG | + | chr7_1:29412940-29412959 | None:intergenic | 45.0% | |
| TCCCAAGTCCTTCGAAAGTA+GGG | - | chr7_1:29410913-29410932 | Msa1015660:CDS | 45.0% | |
| TTATGTACTTGCGGCTTCTG+TGG | + | chr7_1:29411052-29411071 | None:intergenic | 45.0% | |
| !!! | TTATTAATTGAATATTTTAA+TGG | - | chr7_1:29411639-29411658 | Msa1015660:intron | 5.0% |
| !! | TCATAAATATTATTAAAAAA+AGG | - | chr7_1:29412066-29412085 | Msa1015660:intron | 5.0% |
| !!! | ATTTATTTATTTTTATTTGA+AGG | - | chr7_1:29412157-29412176 | Msa1015660:intron | 5.0% |
| !!! | TTTTTTTTAAAAAAAAAACT+TGG | - | chr7_1:29412310-29412329 | Msa1015660:intron | 5.0% |
| !!! | TTATTAATTGAATATTTTAA+TGG | - | chr7_1:29411639-29411658 | Msa1015660:intron | 5.0% |
| !! | TCATAAATATTATTAAAAAA+AGG | - | chr7_1:29412066-29412085 | Msa1015660:intron | 5.0% |
| !!! | ATTTATTTATTTTTATTTGA+AGG | - | chr7_1:29412157-29412176 | Msa1015660:intron | 5.0% |
| !!! | TTTTTTTAAAAAAAAAAACT+TGG | - | chr7_1:29414860-29414879 | Msa1015660:intron | 5.0% |
| TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:29410898-29410917 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | chr7_1:29410912-29410931 | Msa1015660:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | chr7_1:29410917-29410936 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | chr7_1:29410914-29410933 | Msa1015660:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | chr7_1:29410918-29410937 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | chr7_1:29410924-29410943 | None:intergenic | 50.0% |
| AAAGCAAGCGTGGAACATCG+TGG | + | chr7_1:29413024-29413043 | None:intergenic | 50.0% | |
| TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:29410898-29410917 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | chr7_1:29410912-29410931 | Msa1015660:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | chr7_1:29410917-29410936 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | chr7_1:29410914-29410933 | Msa1015660:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | chr7_1:29410918-29410937 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | chr7_1:29410924-29410943 | None:intergenic | 50.0% |
| GGCAATCCTGAAAGCAGTCT+GGG | + | chr7_1:29413645-29413664 | None:intergenic | 50.0% | |
| GTCCTCACTCACATGCTTAC+CGG | - | chr7_1:29413707-29413726 | Msa1015660:intron | 50.0% | |
| TCCTCACTCACATGCTTACC+GGG | - | chr7_1:29413708-29413727 | Msa1015660:intron | 50.0% | |
| TTACCGGGAAACTTCTCGGT+AGG | - | chr7_1:29413723-29413742 | Msa1015660:intron | 50.0% | |
| TGACCTACCGAGAAGTTTCC+CGG | + | chr7_1:29413729-29413748 | None:intergenic | 50.0% | |
| GGCTTGGAGTAGTACTAGGA+TGG | + | chr7_1:29413753-29413772 | None:intergenic | 50.0% | |
| !! | GCTTGGCTTGGAGTAGTACT+AGG | + | chr7_1:29413757-29413776 | None:intergenic | 50.0% |
| ACAGTTAAGCGTGCTTGGCT+TGG | + | chr7_1:29413769-29413788 | None:intergenic | 50.0% | |
| AAGCCAAGCACGCTTAACTG+TGG | - | chr7_1:29413768-29413787 | Msa1015660:intron | 50.0% | |
| ACTCCACAGTTAAGCGTGCT+TGG | + | chr7_1:29413774-29413793 | None:intergenic | 50.0% | |
| GGGACTACATGGTTGAAGGA+AGG | + | chr7_1:29413868-29413887 | None:intergenic | 50.0% | |
| CGTGTAGGTATGGGACTACA+TGG | + | chr7_1:29413879-29413898 | None:intergenic | 50.0% | |
| ACATCGGAATGAGAGGGATC+CGG | + | chr7_1:29413906-29413925 | None:intergenic | 50.0% | |
| CCGAATCACATCGGAATGAG+AGG | + | chr7_1:29413913-29413932 | None:intergenic | 50.0% | |
| GGGAACCTTTCGTATCCAAC+TGG | - | chr7_1:29413986-29414005 | Msa1015660:intron | 50.0% | |
| ACCTTTCGTATCCAACTGGC+GGG | - | chr7_1:29413990-29414009 | Msa1015660:intron | 50.0% | |
| GGATATCGAAAGCCACGTTG+TGG | - | chr7_1:29414011-29414030 | Msa1015660:intron | 50.0% | |
| TGCTTGTAACACCCACAACG+TGG | + | chr7_1:29414026-29414045 | None:intergenic | 50.0% | |
| AAAGCAAGCGTGGAACATCG+TGG | + | chr7_1:29413024-29413043 | None:intergenic | 50.0% | |
| TGGGACAATCAAAGCAAGCG+TGG | + | chr7_1:29410898-29410917 | None:intergenic | 50.0% | |
| GTCCCAAGTCCTTCGAAAGT+AGG | - | chr7_1:29410912-29410931 | Msa1015660:CDS | 50.0% | |
| CCCCTACTTTCGAAGGACTT+GGG | + | chr7_1:29410917-29410936 | None:intergenic | 50.0% | |
| CCCAAGTCCTTCGAAAGTAG+GGG | - | chr7_1:29410914-29410933 | Msa1015660:CDS | 50.0% | |
| ACCCCTACTTTCGAAGGACT+TGG | + | chr7_1:29410918-29410937 | None:intergenic | 50.0% | |
| ! | CAAAGCACCCCTACTTTCGA+AGG | + | chr7_1:29410924-29410943 | None:intergenic | 50.0% |
| GAGTAGGGTCCCAACGTAGT+TGG | + | chr7_1:29412028-29412047 | None:intergenic | 55.0% | |
| CGGCAATCCTGAAAGCAGTC+TGG | + | chr7_1:29413646-29413665 | None:intergenic | 55.0% | |
| TCCCGGTAAGCATGTGAGTG+AGG | + | chr7_1:29413712-29413731 | None:intergenic | 55.0% | |
| TGGAACGGGCACTATCCGTA+AGG | + | chr7_1:29413960-29413979 | None:intergenic | 55.0% | |
| ATAGTGCCCGTTCCAACTGG+CGG | - | chr7_1:29413965-29413984 | Msa1015660:intron | 55.0% | |
| AAGGTTCCCGCCAGTTGGAA+CGG | + | chr7_1:29413975-29413994 | None:intergenic | 55.0% | |
| TACGAAAGGTTCCCGCCAGT+TGG | + | chr7_1:29413980-29413999 | None:intergenic | 55.0% | |
| TCCCGCCAGTTGGATACGAA+AGG | + | chr7_1:29413994-29414013 | None:intergenic | 55.0% | |
| GCTTTCGATATCCCGCCAGT+TGG | + | chr7_1:29414004-29414023 | None:intergenic | 55.0% | |
| GAGTAGGGTCCCAACGTAGT+TGG | + | chr7_1:29412028-29412047 | None:intergenic | 55.0% | |
| TCCCATACCTACACGGCCTC+CGG | - | chr7_1:29413884-29413903 | Msa1015660:intron | 60.0% | |
| TCCGGAGGCCGTGTAGGTAT+GGG | + | chr7_1:29413888-29413907 | None:intergenic | 60.0% | |
| ATCCGGAGGCCGTGTAGGTA+TGG | + | chr7_1:29413889-29413908 | None:intergenic | 60.0% | |
| TCGGAATGAGAGGGATCCGG+AGG | + | chr7_1:29413903-29413922 | None:intergenic | 60.0% | |
| CGGATAGTGCCCGTTCCAAC+TGG | - | chr7_1:29413962-29413981 | Msa1015660:intron | 60.0% | |
| TAGTGCCCGTTCCAACTGGC+GGG | - | chr7_1:29413966-29413985 | Msa1015660:intron | 60.0% | |
| AGGTTCCCGCCAGTTGGAAC+GGG | + | chr7_1:29413974-29413993 | None:intergenic | 60.0% | |
| GAGGGATCCGGAGGCCGTGT+AGG | + | chr7_1:29413894-29413913 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 29410890 | 29415815 | 29410890 | ID=Msa1015660;Name=Msa1015660 |
| chr7_1 | mRNA | 29410890 | 29415815 | 29410890 | ID=Msa1015660-mRNA-1;Parent=Msa1015660;Name=Msa1015660-mRNA-1;_AED=0.29;_eAED=0.45;_QI=0|0|0|1|0|0|6|0|202 |
| chr7_1 | exon | 29415642 | 29415815 | 29415642 | ID=Msa1015660-mRNA-1:exon:6056;Parent=Msa1015660-mRNA-1 |
| chr7_1 | exon | 29415568 | 29415615 | 29415568 | ID=Msa1015660-mRNA-1:exon:6055;Parent=Msa1015660-mRNA-1 |
| chr7_1 | exon | 29413506 | 29413649 | 29413506 | ID=Msa1015660-mRNA-1:exon:6054;Parent=Msa1015660-mRNA-1 |
| chr7_1 | exon | 29413432 | 29413479 | 29413432 | ID=Msa1015660-mRNA-1:exon:6053;Parent=Msa1015660-mRNA-1 |
| chr7_1 | exon | 29410964 | 29411107 | 29410964 | ID=Msa1015660-mRNA-1:exon:6052;Parent=Msa1015660-mRNA-1 |
| chr7_1 | exon | 29410890 | 29410937 | 29410890 | ID=Msa1015660-mRNA-1:exon:6051;Parent=Msa1015660-mRNA-1 |
| chr7_1 | CDS | 29415642 | 29415815 | 29415642 | ID=Msa1015660-mRNA-1:cds;Parent=Msa1015660-mRNA-1 |
| chr7_1 | CDS | 29415568 | 29415615 | 29415568 | ID=Msa1015660-mRNA-1:cds;Parent=Msa1015660-mRNA-1 |
| chr7_1 | CDS | 29413506 | 29413649 | 29413506 | ID=Msa1015660-mRNA-1:cds;Parent=Msa1015660-mRNA-1 |
| chr7_1 | CDS | 29413432 | 29413479 | 29413432 | ID=Msa1015660-mRNA-1:cds;Parent=Msa1015660-mRNA-1 |
| chr7_1 | CDS | 29410964 | 29411107 | 29410964 | ID=Msa1015660-mRNA-1:cds;Parent=Msa1015660-mRNA-1 |
| chr7_1 | CDS | 29410890 | 29410937 | 29410890 | ID=Msa1015660-mRNA-1:cds;Parent=Msa1015660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
