AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1015870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1015870 MtrunA17_Chr7g0236231 86.667 150 2 1 1 132 688 837 2.29e-83 260
Msa1015870 MtrunA17_Chr7g0236201 64.901 151 33 3 1 132 640 789 1.82e-59 195
Msa1015870 MtrunA17_Chr4g0055011 60.667 150 41 2 1 132 241 390 3.60e-57 182
Msa1015870 MtrunA17_Chr7g0236641 63.333 150 37 2 1 132 695 844 2.35e-56 187
Msa1015870 MtrunA17_Chr7g0236531 60.667 150 41 1 1 132 208 357 4.53e-56 178
Msa1015870 MtrunA17_Chr7g0236691 58.667 150 44 1 1 132 670 819 1.04e-53 180
Msa1015870 MtrunA17_Chr7g0236341 60.000 150 37 3 1 132 688 832 3.60e-53 178
Msa1015870 MtrunA17_Chr7g0236121 64.444 135 29 2 1 117 674 807 6.15e-53 177
Msa1015870 MtrunA17_Chr7g0236571 58.621 145 42 1 6 132 510 654 1.37e-52 175
Msa1015870 MtrunA17_Chr7g0236551 60.000 150 42 1 1 132 658 807 4.51e-52 175
Msa1015870 MtrunA17_Chr7g0236471 58.000 150 45 1 1 132 510 659 6.97e-52 173
Msa1015870 MtrunA17_Chr7g0236651 58.000 150 37 2 1 132 655 796 1.35e-48 166
Msa1015870 MtrunA17_Chr7g0236561 54.000 150 50 2 1 132 675 823 4.29e-45 155
Msa1015870 MtrunA17_Chr2g0280761 46.667 150 60 2 1 132 1 148 7.99e-45 143
Msa1015870 MtrunA17_Chr8g0340051 47.020 151 61 2 1 132 199 349 7.88e-42 141
Msa1015870 MtrunA17_Chr8g0340081 47.333 150 61 1 1 132 677 826 1.52e-41 145
Msa1015870 MtrunA17_Chr2g0280781 50.000 150 50 2 1 132 680 822 2.30e-41 145
Msa1015870 MtrunA17_Chr2g0280831 47.651 149 57 3 1 131 265 410 3.95e-41 140
Msa1015870 MtrunA17_Chr2g0280801 48.000 150 57 3 1 132 697 843 1.76e-40 143
Msa1015870 MtrunA17_Chr2g0280791 48.000 150 57 3 1 132 691 837 2.30e-40 142
Msa1015870 MtrunA17_Chr8g0340091 46.358 151 62 2 1 132 702 852 1.00e-39 140
Msa1015870 MtrunA17_Chr8g0340071 46.000 150 63 1 1 132 673 822 6.01e-39 138
Msa1015870 MtrunA17_Chr7g0236511 54.198 131 42 1 20 132 669 799 2.17e-37 134
Msa1015870 MtrunA17_Chr7g0236161 49.630 135 30 2 1 117 640 754 2.47e-36 131
Msa1015870 MtrunA17_Chr8g0340111 46.000 150 63 1 1 132 675 824 4.70e-34 124
Msa1015870 MtrunA17_Chr4g0048631 41.722 151 69 2 1 132 702 852 2.68e-30 114
Msa1015870 MtrunA17_Chr4g0023221 39.189 148 74 1 1 132 900 1047 7.54e-30 112
Msa1015870 MtrunA17_Chr4g0042361 42.857 154 60 4 1 132 709 856 1.48e-29 112
Msa1015870 MtrunA17_Chr3g0081001 39.333 150 73 1 1 132 513 662 3.98e-29 110
Msa1015870 MtrunA17_Chr8g0358071 40.909 154 67 4 1 132 646 797 4.60e-29 110
Msa1015870 MtrunA17_Chr8g0358101 42.143 140 59 3 1 120 634 771 6.96e-29 110
Msa1015870 MtrunA17_Chr8g0357781 37.908 153 74 3 1 132 1 153 8.25e-29 102
Msa1015870 MtrunA17_Chr8g0357981 39.474 152 72 2 1 132 475 626 8.26e-29 109
Msa1015870 MtrunA17_Chr8g0358081 39.610 154 69 4 1 132 631 782 1.31e-28 109
Msa1015870 MtrunA17_Chr8g0358141 40.260 154 68 4 1 132 248 399 1.57e-28 107
Msa1015870 MtrunA17_Chr4g0042431 36.667 150 77 1 1 132 1 150 2.10e-28 101
Msa1015870 MtrunA17_Chr2g0280711 40.523 153 70 2 1 132 700 852 2.48e-28 108
Msa1015870 MtrunA17_Chr4g0042341 41.722 151 63 4 1 132 693 837 3.09e-28 108
Msa1015870 MtrunA17_Chr8g0357991 39.355 155 69 5 1 132 655 807 6.75e-28 107
Msa1015870 MtrunA17_Chr8g0357961 37.908 153 74 3 1 132 654 806 9.86e-28 106
Msa1015870 MtrunA17_Chr8g0358121 44.882 127 48 3 1 107 632 756 1.07e-27 106
Msa1015870 MtrunA17_Chr3g0081011 36.667 150 77 1 1 132 509 658 1.30e-27 106
Msa1015870 MtrunA17_Chr3g0081071 44.915 118 47 1 1 100 99 216 1.59e-27 102
Msa1015870 MtrunA17_Chr8g0354431 40.667 150 71 2 1 132 512 661 2.05e-27 105
Msa1015870 MtrunA17_Chr8g0361161 44.068 118 47 2 1 100 214 330 2.23e-27 103
Msa1015870 MtrunA17_Chr8g0357881 38.710 155 70 5 1 132 646 798 3.24e-27 105
Msa1015870 MtrunA17_Chr4g0042351 42.623 122 52 1 1 104 623 744 4.36e-27 104
Msa1015870 MtrunA17_Chr8g0354281 46.610 118 45 2 1 100 505 622 4.45e-27 104
Msa1015870 MtrunA17_Chr8g0361141 40.816 147 64 4 1 128 686 828 5.61e-27 104
Msa1015870 MtrunA17_Chr4g0048801 36.667 150 76 2 1 132 688 836 6.62e-27 104
Msa1015870 MtrunA17_Chr8g0357661 44.538 119 46 3 1 100 33 150 7.82e-27 98.2
Msa1015870 MtrunA17_Chr8g0358061 43.200 125 53 1 1 107 226 350 7.94e-27 102
Msa1015870 MtrunA17_Chr2g0280691 40.000 150 67 3 1 132 696 840 1.07e-26 103
Msa1015870 MtrunA17_Chr8g0358161 40.876 137 61 5 1 132 216 337 1.14e-26 101
Msa1015870 MtrunA17_Chr8g0357651 44.538 119 46 3 1 100 640 757 1.31e-26 103
Msa1015870 MtrunA17_Chr8g0354271 42.017 119 50 1 1 100 505 623 1.52e-26 103
Msa1015870 MtrunA17_Chr4g0023111 37.692 130 63 1 1 112 884 1013 2.11e-26 102
Msa1015870 MtrunA17_Chr8g0357831 46.729 107 39 1 1 89 362 468 2.15e-26 102
Msa1015870 MtrunA17_Chr8g0354391 37.748 151 75 3 1 132 104 254 2.29e-26 99.0
Msa1015870 MtrunA17_Chr1g0154311 45.299 117 47 1 1 100 521 637 2.61e-26 102
Msa1015870 MtrunA17_Chr4g0042401 41.985 131 53 2 1 113 673 798 3.15e-26 102
Msa1015870 MtrunA17_Chr3g0081031 44.915 118 47 1 1 100 522 639 3.85e-26 102
Msa1015870 MtrunA17_Chr8g0357631 42.857 126 52 3 1 107 638 762 3.88e-26 102
Msa1015870 MtrunA17_Chr8g0354421 44.915 118 47 2 1 100 533 650 4.60e-26 102
Msa1015870 MtrunA17_Chr4g0048571 55.556 81 36 0 1 81 106 186 4.82e-26 97.1
Msa1015870 MtrunA17_Chr1g0206321 36.842 133 65 2 1 114 1 133 5.84e-26 95.5
Msa1015870 MtrunA17_Chr8g0354441 38.000 150 75 2 1 132 520 669 6.95e-26 101
Msa1015870 MtrunA17_Chr8g0357691 42.975 121 51 1 1 103 648 768 1.06e-25 100
Msa1015870 MtrunA17_Chr2g0280751 38.065 155 65 4 1 132 696 842 1.08e-25 100
Msa1015870 MtrunA17_Chr8g0360201 36.667 150 76 2 1 132 576 724 1.96e-25 100
Msa1015870 MtrunA17_Chr5g0394011 44.167 120 47 2 1 100 521 640 2.04e-25 100
Msa1015870 MtrunA17_Chr8g0357761 44.538 119 46 3 1 100 650 767 2.20e-25 100
Msa1015870 MtrunA17_Chr8g0354331 39.161 143 66 4 1 125 270 409 2.34e-25 99.0
Msa1015870 MtrunA17_Chr2g0318811 38.816 152 67 4 1 132 670 815 3.51e-25 99.4
Msa1015870 MtrunA17_Chr8g0357711 41.732 127 54 3 1 108 647 772 4.52e-25 99.0
Msa1015870 MtrunA17_Chr8g0358031 41.600 125 55 1 1 107 649 773 5.22e-25 99.0
Msa1015870 MtrunA17_Chr3g0093161 38.000 150 74 2 1 132 667 815 6.05e-25 98.6
Msa1015870 MtrunA17_Chr1g0154331 43.590 117 49 1 1 100 209 325 7.47e-25 97.1
Msa1015870 MtrunA17_Chr8g0361341 36.667 150 69 3 1 132 8 149 7.49e-25 92.4
Msa1015870 MtrunA17_Chr2g0280681 35.948 153 77 2 1 132 671 823 8.69e-25 98.2
Msa1015870 MtrunA17_Chr4g0048581 43.966 116 46 2 1 98 701 815 1.09e-24 98.2
Msa1015870 MtrunA17_Chr8g0361251 36.667 150 69 3 1 132 676 817 1.16e-24 97.8
Msa1015870 MtrunA17_Chr3g0081101 40.146 137 58 3 5 123 12 142 1.22e-24 92.4
Msa1015870 MtrunA17_Chr2g0318841 40.136 147 62 5 1 127 671 811 1.81e-24 97.4
Msa1015870 MtrunA17_Chr4g0042381 40.984 122 54 1 1 104 623 744 2.78e-24 97.1
Msa1015870 MtrunA17_Chr4g0042441 34.437 151 80 2 1 132 670 820 2.80e-24 97.1
Msa1015870 MtrunA17_Chr2g0318831 37.500 152 69 4 1 132 672 817 3.20e-24 96.7
Msa1015870 MtrunA17_Chr1g0206331 36.879 141 71 2 1 123 505 645 6.32e-24 95.9
Msa1015870 MtrunA17_Chr1g0154371 37.419 155 72 3 1 132 526 678 6.80e-24 95.9
Msa1015870 MtrunA17_Chr3g0092301 36.667 150 75 3 1 132 100 247 7.29e-24 92.4
Msa1015870 MtrunA17_Chr8g0357921 38.400 125 59 1 1 107 1 125 8.95e-24 89.7
Msa1015870 MtrunA17_Chr1g0154351 42.735 117 50 1 1 100 528 644 9.63e-24 95.1
Msa1015870 MtrunA17_Chr6g0453561 36.842 152 75 4 1 132 37 187 1.11e-23 90.5
Msa1015870 MtrunA17_Chr1g0206361 35.669 157 76 2 1 132 513 669 1.11e-23 95.1
Msa1015870 MtrunA17_Chr2g0280731 37.748 151 71 4 1 132 720 866 1.14e-23 95.1
Msa1015870 MtrunA17_Chr6g0475091 33.766 154 75 3 1 127 751 904 1.54e-23 94.7
Msa1015870 MtrunA17_Chr5g0428111 39.333 150 71 3 1 132 673 820 1.59e-23 94.7
Msa1015870 MtrunA17_Chr6g0474991 39.344 122 55 2 1 103 33 154 1.62e-23 90.1
Msa1015870 MtrunA17_Chr1g0206261 36.129 155 76 4 1 132 258 412 1.72e-23 94.0
Msa1015870 MtrunA17_Chr2g0323231 36.975 119 57 1 1 101 348 466 1.99e-23 94.0
Msa1015870 MtrunA17_Chr8g0361281 39.735 151 65 6 1 132 683 826 3.22e-23 94.0
Msa1015870 MtrunA17_Chr3g0082941 38.983 118 54 1 1 100 343 460 3.25e-23 93.6
Msa1015870 MtrunA17_Chr8g0354351 41.667 132 54 3 1 114 503 629 3.65e-23 93.6
Msa1015870 MtrunA17_Chr4g0042391 40.164 122 55 1 1 104 623 744 4.04e-23 93.6
Msa1015870 MtrunA17_Chr3g0098781 37.086 151 73 4 1 132 81 228 4.14e-23 90.1
Msa1015870 MtrunA17_Chr1g0206351 40.000 120 54 1 1 102 523 642 4.76e-23 93.2
Msa1015870 MtrunA17_Chr5g0428581 40.336 119 54 1 1 102 214 332 5.35e-23 92.0
Msa1015870 MtrunA17_Chr5g0394021 37.671 146 73 3 1 129 491 635 5.41e-23 93.2
Msa1015870 MtrunA17_Chr6g0474811 36.842 133 65 2 1 114 743 875 9.08e-23 92.4
Msa1015870 MtrunA17_Chr4g0048661 39.024 123 56 2 1 105 207 328 1.34e-22 90.9
Msa1015870 MtrunA17_Chr3g0084441 36.552 145 72 2 1 126 676 819 2.09e-22 91.7
Msa1015870 MtrunA17_Chr5g0422921 40.000 150 71 3 1 132 668 816 2.30e-22 91.3
Msa1015870 MtrunA17_Chr6g0474871 35.338 133 67 2 1 114 735 867 2.96e-22 91.3
Msa1015870 MtrunA17_Chr3g0078531 38.667 150 70 4 1 132 697 842 3.54e-22 90.9
Msa1015870 MtrunA17_Chr1g0206391 38.843 121 56 1 1 103 210 330 4.58e-22 89.7
Msa1015870 MtrunA17_Chr4g0020081 35.762 151 75 3 1 132 681 828 4.72e-22 90.5
Msa1015870 MtrunA17_Chr2g0280701 35.333 150 76 3 1 132 670 816 4.76e-22 90.5
Msa1015870 MtrunA17_Chr3g0084491 38.411 151 71 3 1 132 676 823 5.35e-22 90.5
Msa1015870 MtrunA17_Chr8g0361441 35.333 150 78 2 1 132 676 824 5.57e-22 90.1
Msa1015870 MtrunA17_Chr1g0154321 40.909 110 48 1 1 93 538 647 7.19e-22 90.1
Msa1015870 MtrunA17_Chr1g0206231 34.211 152 80 4 1 132 516 667 9.53e-22 89.7
Msa1015870 MtrunA17_Chr3g0078541 38.667 150 70 4 1 132 700 845 1.15e-21 89.4
Msa1015870 MtrunA17_Chr3g0084451 37.313 134 64 2 1 115 676 808 1.21e-21 89.4
Msa1015870 MtrunA17_Chr8g0361261 36.667 150 69 4 1 132 707 848 1.24e-21 89.4
Msa1015870 MtrunA17_Chr1g0206551 41.176 119 52 2 1 101 205 323 1.75e-21 87.8
Msa1015870 MtrunA17_Chr5g0426941 37.107 159 71 4 1 132 509 665 1.79e-21 89.0
Msa1015870 MtrunA17_Chr8g0347571 36.290 124 61 1 1 106 740 863 2.00e-21 88.6
Msa1015870 MtrunA17_Chr8g0361301 36.000 150 70 4 1 132 676 817 2.40e-21 88.6
Msa1015870 MtrunA17_Chr1g0206401 36.090 133 67 1 1 115 520 652 2.50e-21 88.6
Msa1015870 MtrunA17_Chr6g0475111 33.871 124 64 1 1 106 757 880 2.70e-21 88.2
Msa1015870 MtrunA17_Chr3g0084631 36.923 130 63 2 1 112 33 161 2.80e-21 84.0
Msa1015870 MtrunA17_Chr4g0048681 38.333 120 55 2 1 102 450 568 2.96e-21 88.2
Msa1015870 MtrunA17_Chr4g0048791 38.211 123 57 2 1 105 702 823 3.32e-21 88.2
Msa1015870 MtrunA17_Chr3g0078551 37.931 145 71 2 1 127 694 837 3.77e-21 87.8
Msa1015870 MtrunA17_Chr5g0428101 36.667 150 69 4 1 132 671 812 4.05e-21 87.8
Msa1015870 MtrunA17_Chr3g0084661 35.556 135 68 2 1 117 203 336 4.27e-21 86.7
Msa1015870 MtrunA17_Chr3g0078521 38.000 150 71 4 1 132 689 834 4.93e-21 87.4
Msa1015870 MtrunA17_Chr6g0474901 33.766 154 75 3 1 127 736 889 4.97e-21 87.4
Msa1015870 MtrunA17_Chr1g0206561 37.838 148 61 3 1 117 499 646 5.24e-21 87.4
Msa1015870 MtrunA17_Chr3g0084691 37.879 132 62 2 1 113 692 822 5.49e-21 87.4
Msa1015870 MtrunA17_Chr3g0084681 35.099 151 72 3 1 132 634 777 6.88e-21 87.0
Msa1015870 MtrunA17_Chr1g0206461 35.570 149 79 1 1 132 503 651 7.35e-21 87.0
Msa1015870 MtrunA17_Chr5g0394001 38.667 150 71 4 1 129 500 649 9.65e-21 86.7
Msa1015870 MtrunA17_Chr3g0084431 40.678 118 51 2 1 100 664 780 1.22e-20 86.3
Msa1015870 MtrunA17_Chr4g0048741 38.095 126 57 3 1 106 702 826 1.33e-20 86.3
Msa1015870 MtrunA17_Chr3g0084411 36.601 153 75 4 1 132 669 820 1.52e-20 86.3
Msa1015870 MtrunA17_Chr1g0206521 34.899 149 80 1 1 132 1147 1295 1.72e-20 86.3
Msa1015870 MtrunA17_Chr1g0206521 38.793 116 54 1 1 99 505 620 3.92e-19 82.0
Msa1015870 MtrunA17_Chr6g0474861 37.190 121 57 2 1 102 456 576 2.45e-20 85.5
Msa1015870 MtrunA17_Chr3g0119041 36.842 133 64 3 1 114 510 641 2.67e-20 85.5
Msa1015870 MtrunA17_Chr4g0048781 34.667 150 78 3 1 132 158 305 3.00e-20 84.0
Msa1015870 MtrunA17_Chr4g0048731 36.441 118 56 2 1 100 216 332 3.37e-20 84.3
Msa1015870 MtrunA17_Chr6g0475131 32.450 151 81 3 1 132 179 327 4.72e-20 83.6
Msa1015870 MtrunA17_Chr6g0475201 35.115 131 66 2 1 112 744 874 1.01e-19 84.0
Msa1015870 MtrunA17_Chr3g0084421 35.294 153 77 3 1 132 632 783 4.19e-19 82.0
Msa1015870 MtrunA17_Chr8g0361431 38.333 120 55 3 1 102 654 772 4.86e-19 82.0
Msa1015870 MtrunA17_Chr1g0206221 31.081 148 78 4 7 132 1 146 9.21e-19 76.6
Msa1015870 MtrunA17_Chr4g0048711 38.835 103 45 1 1 85 256 358 1.40e-18 80.1
Msa1015870 MtrunA17_Chr4g0048711 35.000 120 59 2 1 102 99 217 1.19e-17 77.4
Msa1015870 MtrunA17_Chr1g0206451 36.242 149 78 1 1 132 542 690 2.27e-18 80.1
Msa1015870 MtrunA17_Chr1g0205771 34.188 117 59 1 1 99 513 629 2.45e-18 79.7
Msa1015870 MtrunA17_Chr7g0226891 34.454 119 58 2 1 101 218 334 3.99e-18 79.0
Msa1015870 MtrunA17_Chr6g0474851 34.375 128 65 2 1 109 98 225 1.15e-17 76.3
Msa1015870 MtrunA17_Chr7g0236631 73.810 42 11 0 1 42 24 65 1.17e-17 72.0
Msa1015870 MtrunA17_Chr5g0393981 30.464 151 81 4 1 129 566 714 1.72e-17 77.4
Msa1015870 MtrunA17_Chr1g0206531 39.655 116 53 1 1 99 507 622 2.93e-17 76.6
Msa1015870 MtrunA17_Chr8g0357871 42.553 94 39 2 1 79 1 94 3.53e-17 72.0
Msa1015870 MtrunA17_Chr6g0484231 35.659 129 66 2 1 112 218 346 6.11e-17 75.5
Msa1015870 MtrunA17_Chr4g0048641 33.548 155 73 5 1 132 628 775 1.06e-16 75.1
Msa1015870 MtrunA17_Chr1g0206431 38.793 116 54 1 1 99 55 170 1.23e-16 72.8
Msa1015870 MtrunA17_Chr4g0065521 32.500 120 63 1 3 104 209 328 1.30e-16 74.3
Msa1015870 MtrunA17_Chr4g0065561 32.231 121 64 1 3 105 618 738 2.10e-16 74.3
Msa1015870 MtrunA17_Chr6g0474831 46.575 73 38 1 1 72 226 298 3.00e-16 73.2
Msa1015870 MtrunA17_Chr2g0315151 36.893 103 47 1 1 85 835 937 4.33e-16 73.6
Msa1015870 MtrunA17_Chr5g0443531 35.922 103 48 1 1 85 847 949 4.82e-16 73.2
Msa1015870 MtrunA17_Chr8g0359691 37.736 106 48 2 1 88 833 938 4.96e-16 73.2
Msa1015870 MtrunA17_Chr8g0357901 57.143 49 21 0 1 49 18 66 6.48e-16 68.2
Msa1015870 MtrunA17_Chr4g0065541 33.058 121 63 1 3 105 610 730 8.55e-16 72.4
Msa1015870 MtrunA17_Chr8g0359641 35.849 106 50 2 1 88 836 941 5.80e-15 70.1
Msa1015870 MtrunA17_Chr6g0475181 30.000 130 58 2 1 112 1 115 1.27e-14 65.9
Msa1015870 MtrunA17_Chr8g0359651 34.906 106 51 2 1 88 836 941 1.65e-14 68.9
Msa1015870 MtrunA17_Chr8g0358781 36.792 106 50 1 1 89 511 616 2.19e-14 68.6
Msa1015870 MtrunA17_Chr4g0071371 30.159 126 69 2 2 108 305 430 2.26e-14 68.6
Msa1015870 MtrunA17_Chr7g0242201 30.189 159 82 5 1 131 213 370 2.49e-14 68.2
Msa1015870 MtrunA17_Chr2g0315081 33.058 121 51 3 1 91 823 943 2.53e-14 68.6
Msa1015870 MtrunA17_Chr8g0359581 33.981 103 41 3 1 85 83 176 3.27e-14 65.9
Msa1015870 MtrunA17_Chr8g0358821 33.898 118 61 1 1 101 856 973 3.42e-14 68.2
Msa1015870 MtrunA17_Chr8g0357911 61.364 44 17 0 1 44 75 118 3.74e-14 64.3
Msa1015870 MtrunA17_Chr2g0314881 33.962 106 52 1 1 88 398 503 3.86e-14 67.8
Msa1015870 MtrunA17_Chr2g0314901 28.859 149 73 4 1 116 838 986 4.27e-14 67.8
Msa1015870 MtrunA17_Chr2g0281971 34.906 106 52 1 1 89 218 323 5.37e-14 67.0
Msa1015870 MtrunA17_Chr8g0357931 47.541 61 32 0 8 68 564 624 7.12e-14 67.0
Msa1015870 MtrunA17_Chr2g0314961 34.821 112 53 3 1 94 305 414 9.66e-14 66.6
Msa1015870 MtrunA17_Chr2g0314991 30.216 139 72 4 1 120 1346 1478 9.87e-14 66.6
Msa1015870 MtrunA17_Chr2g0314991 32.231 121 52 3 1 91 380 500 1.10e-12 63.9
Msa1015870 MtrunA17_Chr5g0428521 60.377 53 21 0 1 53 170 222 1.15e-13 65.1
Msa1015870 MtrunA17_Chr4g0058891 29.861 144 76 5 1 123 455 594 1.16e-13 66.6
Msa1015870 MtrunA17_Chr2g0314911 32.231 121 52 3 1 91 831 951 3.39e-13 65.1
Msa1015870 MtrunA17_Chr2g0314861 33.962 106 52 1 1 88 89 194 3.56e-13 64.3
Msa1015870 MtrunA17_Chr2g0299041 29.412 119 65 1 2 101 283 401 5.22e-13 64.3
Msa1015870 MtrunA17_Chr1g0206421 32.026 153 75 3 1 127 398 547 6.41e-13 64.3
Msa1015870 MtrunA17_Chr2g0312561 31.667 120 63 3 1 101 212 331 8.33e-13 63.9
Msa1015870 MtrunA17_Chr2g0314841 33.962 106 52 1 1 88 830 935 8.41e-13 63.9
Msa1015870 MtrunA17_Chr2g0315061 33.010 103 51 2 1 85 206 308 9.23e-13 63.5
Msa1015870 MtrunA17_Chr2g0314821 33.962 106 52 1 1 88 833 938 9.45e-13 63.9
Msa1015870 MtrunA17_Chr7g0259211 34.783 115 57 2 1 97 457 571 1.51e-12 63.2
Msa1015870 MtrunA17_Chr5g0438071 28.472 144 80 3 1 126 829 967 1.57e-12 63.2
Msa1015870 MtrunA17_Chr1g0160921 35.227 88 57 0 1 88 220 307 2.88e-12 62.4
Msa1015870 MtrunA17_Chr5g0413171 31.008 129 66 1 1 106 256 384 3.03e-12 62.4
Msa1015870 MtrunA17_Chr8g0358911 33.636 110 54 3 1 92 215 323 6.64e-12 61.2
Msa1015870 MtrunA17_Chr3g0109411 33.019 106 52 2 2 88 494 599 6.74e-12 61.2
Msa1015870 MtrunA17_Chr1g0196381 31.776 107 51 3 1 89 285 387 8.64e-12 60.8
Msa1015870 MtrunA17_Chr8g0379931 33.333 111 55 2 1 93 876 985 8.84e-12 61.2
Msa1015870 MtrunA17_Chr7g0261141 42.593 54 31 0 3 56 16 69 9.43e-12 56.6
Msa1015870 MtrunA17_Chr8g0376131 44.444 63 35 0 1 63 221 283 1.90e-11 60.1
Msa1015870 MtrunA17_Chr1g0159611 31.757 148 70 7 1 122 411 553 1.95e-11 60.1
Msa1015870 MtrunA17_Chr5g0428571 60.417 48 19 0 1 48 468 515 2.91e-11 59.7
Msa1015870 MtrunA17_Chr6g0485761 31.034 116 48 3 1 89 462 572 5.75e-11 58.9
Msa1015870 MtrunA17_Chr4g0060011 30.357 112 61 1 1 95 483 594 8.84e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1015870 AT1G11300.1 48.667 150 52 4 1 132 678 820 3.48e-34 125
Msa1015870 AT1G11300.2 48.667 150 52 4 1 132 663 805 4.01e-34 125
Msa1015870 AT1G11330.1 40.000 150 72 1 1 132 691 840 4.54e-31 116
Msa1015870 AT1G11330.2 40.000 150 72 1 1 132 693 842 4.63e-31 116
Msa1015870 AT1G11350.1 42.000 150 69 1 1 132 681 830 7.66e-31 115
Msa1015870 AT1G65790.1 40.385 156 69 2 1 132 688 843 1.59e-30 115
Msa1015870 AT1G11303.1 43.333 150 60 3 1 132 678 820 2.11e-29 112
Msa1015870 AT4G21380.1 41.026 156 68 2 1 132 695 850 1.11e-27 107
Msa1015870 AT1G65800.1 44.262 122 46 1 1 100 692 813 1.64e-27 106
Msa1015870 AT4G03230.3 40.789 152 70 3 1 132 694 845 2.72e-27 105
Msa1015870 AT4G03230.7 40.789 152 70 3 1 132 702 853 2.78e-27 105
Msa1015870 AT4G03230.2 40.789 152 70 3 1 132 759 910 3.59e-27 105
Msa1015870 AT4G03230.6 40.789 152 70 3 1 132 759 910 3.59e-27 105
Msa1015870 AT4G03230.4 40.789 152 70 3 1 132 859 1010 3.77e-27 105
Msa1015870 AT4G03230.1 40.789 152 70 3 1 132 859 1010 3.77e-27 105
Msa1015870 AT4G03230.5 40.789 152 70 3 1 132 787 938 4.29e-27 105
Msa1015870 AT4G03230.8 40.789 152 70 3 1 132 701 852 6.64e-27 104
Msa1015870 AT4G21410.3 40.132 152 71 3 1 132 528 679 1.13e-26 103
Msa1015870 AT1G61610.1 37.908 153 70 4 1 132 694 842 6.41e-26 102
Msa1015870 AT4G23180.1 35.065 154 77 3 1 132 517 669 7.68e-26 101
Msa1015870 AT4G21410.1 40.132 152 71 3 1 132 403 554 2.33e-25 100
Msa1015870 AT4G00960.2 38.655 119 54 1 1 100 133 251 5.91e-25 96.3
Msa1015870 AT4G00960.3 38.655 119 54 1 1 100 140 258 7.85e-25 96.3
Msa1015870 AT4G00970.1 35.099 151 79 1 1 132 515 665 1.50e-24 97.8
Msa1015870 AT1G61370.2 38.000 150 70 3 1 132 519 663 2.12e-24 97.4
Msa1015870 AT4G00960.1 38.655 119 54 1 1 100 227 345 2.39e-24 96.3
Msa1015870 AT1G61370.1 38.000 150 70 3 1 132 670 814 2.94e-24 97.1
Msa1015870 AT1G11410.1 37.821 156 71 6 1 132 692 845 3.19e-24 97.1
Msa1015870 AT1G11410.2 37.821 156 71 6 1 132 577 730 3.36e-24 97.1
Msa1015870 AT1G11410.4 37.821 156 71 6 1 132 699 852 3.55e-24 97.1
Msa1015870 AT1G11410.3 37.821 156 71 6 1 132 668 821 3.79e-24 97.1
Msa1015870 AT4G23140.1 37.419 155 74 3 1 132 520 674 5.40e-24 96.3
Msa1015870 AT4G23140.2 37.419 155 74 3 1 132 526 680 6.13e-24 96.3
Msa1015870 AT4G23160.1 35.616 146 76 1 1 128 528 673 9.40e-24 95.9
Msa1015870 AT4G23150.1 38.843 121 56 1 1 103 505 625 2.80e-23 94.4
Msa1015870 AT4G23130.1 34.437 151 80 2 1 132 509 659 5.15e-23 93.6
Msa1015870 AT4G23130.2 34.437 151 80 2 1 132 513 663 5.16e-23 93.6
Msa1015870 AT4G21400.1 38.158 152 74 3 1 132 532 683 5.71e-23 93.6
Msa1015870 AT4G21390.1 37.255 153 74 4 1 132 698 849 5.74e-23 93.6
Msa1015870 AT4G21400.7 38.158 152 74 3 1 132 522 673 5.81e-23 93.6
Msa1015870 AT4G21400.2 38.158 152 74 3 1 132 520 671 5.97e-23 93.6
Msa1015870 AT4G11530.1 38.462 156 72 4 1 132 521 676 9.62e-23 92.8
Msa1015870 AT4G21400.8 38.158 152 74 3 1 132 421 572 1.01e-22 92.8
Msa1015870 AT4G23270.2 33.775 151 81 2 1 132 495 645 1.68e-22 92.0
Msa1015870 AT4G23270.1 33.775 151 81 2 1 132 495 645 1.68e-22 92.0
Msa1015870 AT4G11470.1 39.344 122 55 3 1 103 508 629 3.26e-22 91.3
Msa1015870 AT4G11470.2 39.344 122 55 3 1 103 513 634 3.52e-22 91.3
Msa1015870 AT4G23270.3 34.247 146 77 2 1 127 495 640 3.97e-22 90.9
Msa1015870 AT4G23280.1 35.065 154 78 3 1 132 513 666 4.15e-22 90.9
Msa1015870 AT4G23310.1 34.416 154 79 3 1 132 677 830 4.26e-22 90.9
Msa1015870 AT4G23280.2 35.065 154 78 3 1 132 511 664 4.27e-22 90.9
Msa1015870 AT4G23280.3 35.065 154 78 3 1 132 463 616 4.29e-22 90.9
Msa1015870 AT4G23310.2 34.416 154 79 3 1 132 637 790 4.45e-22 90.9
Msa1015870 AT4G23230.1 38.136 118 55 1 1 100 506 623 5.55e-22 90.5
Msa1015870 AT4G27300.1 36.424 151 73 4 1 132 669 815 8.79e-22 90.1
Msa1015870 AT4G27290.2 38.411 151 73 2 1 132 680 829 1.42e-21 89.4
Msa1015870 AT1G11340.1 36.184 152 75 4 1 132 684 833 1.46e-21 89.4
Msa1015870 AT4G27290.1 38.411 151 73 2 1 132 634 783 2.09e-21 89.0
Msa1015870 AT4G11480.1 37.705 122 57 2 1 103 498 619 3.30e-21 88.6
Msa1015870 AT1G11280.3 35.065 154 71 4 1 132 662 808 3.51e-21 88.6
Msa1015870 AT4G11480.4 37.705 122 57 2 1 103 490 611 3.59e-21 88.2
Msa1015870 AT4G11480.3 37.705 122 57 2 1 103 493 614 3.63e-21 88.2
Msa1015870 AT1G11280.2 35.065 154 71 4 1 132 674 820 3.66e-21 88.2
Msa1015870 AT1G11280.4 35.065 154 71 4 1 132 672 818 4.11e-21 88.2
Msa1015870 AT3G45860.1 32.432 148 80 2 1 128 520 667 4.18e-21 88.2
Msa1015870 AT1G11280.1 35.065 154 71 4 1 132 684 830 4.76e-21 88.2
Msa1015870 AT4G23240.2 37.705 122 57 3 1 103 197 318 6.02e-21 86.7
Msa1015870 AT1G61380.2 34.868 152 76 4 1 132 510 658 8.61e-21 87.4
Msa1015870 AT1G61380.1 34.868 152 76 4 1 132 657 805 9.72e-21 87.0
Msa1015870 AT4G21366.1 42.453 106 37 2 1 82 1 106 9.94e-21 81.3
Msa1015870 AT4G23260.2 34.211 152 80 4 1 132 497 648 9.94e-21 87.0
Msa1015870 AT4G23260.1 34.211 152 80 4 1 132 508 659 1.01e-20 87.0
Msa1015870 AT4G38830.1 34.211 152 80 1 1 132 514 665 1.07e-20 87.0
Msa1015870 AT4G23240.1 37.705 122 57 3 1 103 504 625 1.14e-20 87.0
Msa1015870 AT4G23250.2 35.606 132 66 3 1 113 523 654 1.76e-20 86.3
Msa1015870 AT4G23250.1 35.606 132 66 3 1 113 528 659 1.90e-20 86.3
Msa1015870 AT4G21230.1 36.842 152 65 5 1 132 502 642 2.33e-20 85.9
Msa1015870 AT4G23250.3 35.606 132 66 3 1 113 523 654 2.95e-20 85.9
Msa1015870 AT1G61420.5 32.667 150 78 4 1 132 515 659 3.19e-20 85.5
Msa1015870 AT1G61420.3 32.667 150 78 4 1 132 513 657 3.22e-20 85.5
Msa1015870 AT4G11460.2 36.066 122 59 3 1 103 440 561 3.84e-20 85.5
Msa1015870 AT4G11460.3 36.066 122 59 3 1 103 515 636 4.73e-20 85.1
Msa1015870 AT4G11460.1 36.066 122 59 3 1 103 518 639 4.73e-20 85.1
Msa1015870 AT1G61420.1 32.667 150 78 4 1 132 663 807 5.78e-20 85.1
Msa1015870 AT1G61420.2 32.667 150 78 4 1 132 665 809 5.78e-20 85.1
Msa1015870 AT1G61420.4 32.667 150 78 4 1 132 665 809 5.78e-20 85.1
Msa1015870 AT4G05200.2 33.884 121 62 1 1 103 534 654 6.02e-20 84.7
Msa1015870 AT4G05200.1 33.884 121 62 1 1 103 516 636 6.06e-20 84.7
Msa1015870 AT4G23190.1 32.624 141 74 2 1 120 519 659 8.42e-20 84.3
Msa1015870 AT1G61490.3 32.000 150 80 3 1 132 509 654 1.10e-19 84.0
Msa1015870 AT4G23190.3 32.624 141 74 2 1 120 441 581 1.10e-19 84.0
Msa1015870 AT4G23190.4 32.624 141 74 2 1 120 441 581 1.10e-19 84.0
Msa1015870 AT4G23300.1 35.246 122 58 3 1 101 522 643 1.11e-19 84.0
Msa1015870 AT1G61490.6 32.000 150 80 3 1 132 633 778 1.74e-19 83.6
Msa1015870 AT1G61490.7 32.000 150 80 3 1 132 633 778 1.74e-19 83.6
Msa1015870 AT1G61490.4 32.000 150 80 3 1 132 659 804 1.98e-19 83.6
Msa1015870 AT1G61490.1 32.000 150 80 3 1 132 659 804 1.98e-19 83.6
Msa1015870 AT1G61490.2 32.000 150 80 3 1 132 659 804 1.98e-19 83.6
Msa1015870 AT1G61490.5 32.000 150 80 3 1 132 659 804 1.98e-19 83.6
Msa1015870 AT1G61390.2 34.000 150 74 4 1 132 521 663 2.77e-19 82.8
Msa1015870 AT1G61390.1 34.000 150 74 4 1 132 689 831 3.04e-19 82.8
Msa1015870 AT1G61430.11 34.000 150 77 4 1 132 635 780 3.36e-19 82.8
Msa1015870 AT1G61430.12 34.000 150 77 4 1 132 635 780 3.36e-19 82.8
Msa1015870 AT1G61430.13 34.000 150 77 4 1 132 635 780 3.36e-19 82.8
Msa1015870 AT1G61430.9 34.000 150 77 4 1 132 658 803 3.90e-19 82.4
Msa1015870 AT1G61430.1 34.000 150 77 4 1 132 661 806 3.94e-19 82.4
Msa1015870 AT3G16030.2 37.398 123 52 4 1 100 573 693 5.31e-19 82.0
Msa1015870 AT3G16030.6 37.398 123 52 4 1 100 717 837 5.36e-19 82.0
Msa1015870 AT4G23320.2 36.066 122 59 3 1 103 352 473 6.16e-19 82.0
Msa1015870 AT4G23320.1 36.066 122 59 3 1 103 352 473 6.16e-19 82.0
Msa1015870 AT4G23320.3 36.066 122 59 3 1 103 373 494 6.52e-19 81.6
Msa1015870 AT1G61400.2 33.333 150 78 3 1 132 677 822 6.53e-19 82.0
Msa1015870 AT1G61400.1 33.333 150 78 3 1 132 669 814 7.69e-19 81.6
Msa1015870 AT3G16030.1 37.398 123 52 4 1 100 696 816 8.35e-19 81.6
Msa1015870 AT1G61500.3 30.667 150 81 3 1 132 665 809 2.56e-18 80.1
Msa1015870 AT1G61500.2 30.667 150 81 3 1 132 642 786 2.81e-18 80.1
Msa1015870 AT1G61500.1 30.667 150 81 3 1 132 660 804 2.82e-18 80.1
Msa1015870 AT4G11490.1 34.454 119 59 2 1 100 490 608 5.72e-18 79.3
Msa1015870 AT1G53430.2 36.607 112 53 2 1 94 797 908 6.73e-18 79.0
Msa1015870 AT4G04570.1 40.171 117 49 3 1 100 517 629 6.77e-18 79.0
Msa1015870 AT4G23290.1 34.146 123 62 3 1 104 489 611 7.67e-18 79.0
Msa1015870 AT1G61550.1 37.288 118 55 3 1 100 658 774 8.33e-18 78.6
Msa1015870 AT1G61480.1 34.167 120 60 2 1 102 665 783 8.50e-18 78.6
Msa1015870 AT1G61360.2 34.641 153 62 5 1 116 586 737 1.01e-17 78.6
Msa1015870 AT1G61360.3 34.641 153 62 5 1 116 586 737 1.01e-17 78.6
Msa1015870 AT1G61360.4 34.641 153 62 5 1 116 586 737 1.01e-17 78.6
Msa1015870 AT4G23290.2 34.146 123 62 3 1 104 532 654 1.08e-17 78.6
Msa1015870 AT1G61360.1 34.641 153 62 5 1 116 667 818 1.15e-17 78.2
Msa1015870 AT4G11900.9 30.921 152 77 6 1 132 637 780 1.51e-17 78.2
Msa1015870 AT4G11900.1 30.921 152 77 6 1 132 706 849 1.53e-17 78.2
Msa1015870 AT1G53440.1 36.607 112 53 2 1 94 836 947 1.55e-17 78.2
Msa1015870 AT1G61440.1 33.793 145 67 3 1 127 647 780 1.59e-17 77.8
Msa1015870 AT1G67520.8 38.211 123 51 4 1 100 457 577 1.75e-17 77.8
Msa1015870 AT1G67520.7 38.211 123 51 4 1 100 457 577 1.75e-17 77.8
Msa1015870 AT1G61440.3 33.793 145 67 3 1 127 652 785 1.86e-17 77.8
Msa1015870 AT1G67520.5 38.211 123 51 4 1 100 428 548 1.91e-17 77.8
Msa1015870 AT1G67520.6 38.211 123 51 4 1 100 672 792 2.12e-17 77.4
Msa1015870 AT1G67520.4 38.211 123 51 4 1 100 622 742 2.15e-17 77.4
Msa1015870 AT1G67520.3 38.211 123 51 4 1 100 665 785 2.22e-17 77.4
Msa1015870 AT1G61440.2 36.441 118 56 2 1 100 677 793 2.33e-17 77.4
Msa1015870 AT1G53430.1 36.607 112 53 2 1 94 838 949 2.75e-17 77.4
Msa1015870 AT4G23220.1 29.221 154 87 3 1 132 505 658 4.52e-17 76.6
Msa1015870 AT4G04490.1 39.496 119 50 4 1 101 509 623 1.04e-16 75.5
Msa1015870 AT4G04540.4 40.171 117 49 3 1 100 493 605 1.15e-16 75.5
Msa1015870 AT4G04540.1 40.171 117 49 3 1 100 522 634 1.29e-16 75.5
Msa1015870 AT1G07650.2 30.935 139 74 2 1 121 854 988 1.30e-16 75.5
Msa1015870 AT1G07650.1 30.935 139 74 2 1 121 848 982 1.35e-16 75.5
Msa1015870 AT1G07650.4 30.935 139 74 2 1 121 635 769 1.45e-16 75.1
Msa1015870 AT1G07650.3 30.935 139 74 2 1 121 822 956 1.55e-16 75.1
Msa1015870 AT4G23200.1 30.000 140 72 3 1 121 505 637 1.79e-16 75.1
Msa1015870 AT1G11330.3 63.265 49 18 0 1 49 693 741 5.04e-15 70.9
Msa1015870 AT3G14840.2 34.951 103 49 2 1 85 841 943 2.30e-14 68.9
Msa1015870 AT1G70530.1 27.660 141 74 5 1 116 491 628 3.03e-14 68.6
Msa1015870 AT4G04510.1 32.215 149 76 3 1 132 508 648 3.30e-14 68.6
Msa1015870 AT4G04510.2 32.215 149 76 3 1 132 510 650 3.44e-14 68.6
Msa1015870 AT4G23210.3 34.711 121 56 4 1 101 527 644 3.66e-14 68.2
Msa1015870 AT1G53420.1 33.333 108 54 2 1 90 793 900 4.88e-14 68.2
Msa1015870 AT1G70740.1 48.485 66 34 0 1 66 230 295 8.87e-14 67.0
Msa1015870 AT1G29730.1 35.514 107 50 3 1 88 808 914 1.29e-13 66.6
Msa1015870 AT1G29730.2 35.514 107 50 3 1 88 840 946 1.29e-13 66.6
Msa1015870 AT1G61610.2 62.500 48 17 1 1 48 694 740 1.54e-13 66.6
Msa1015870 AT1G56120.3 31.579 133 74 1 1 116 711 843 1.62e-13 66.6
Msa1015870 AT1G56120.2 31.579 133 74 1 1 116 859 991 1.87e-13 66.2
Msa1015870 AT1G56120.1 31.579 133 74 1 1 116 877 1009 1.89e-13 66.2
Msa1015870 AT4G21390.2 53.968 63 27 2 1 62 698 759 1.92e-13 66.2
Msa1015870 AT1G56145.2 29.134 127 73 2 1 110 881 1007 3.31e-13 65.5
Msa1015870 AT4G23180.2 56.250 48 21 0 1 48 517 564 4.53e-13 65.1
Msa1015870 AT4G28670.1 31.933 119 63 1 1 101 503 621 5.66e-13 64.7
Msa1015870 AT1G11340.3 63.830 47 15 1 1 47 752 796 8.75e-13 64.3
Msa1015870 AT4G23130.3 65.116 43 15 0 1 43 513 555 1.08e-12 63.9
Msa1015870 AT1G56145.1 30.508 118 65 2 1 101 854 971 1.41e-12 63.9
Msa1015870 AT1G56145.3 30.508 118 65 2 1 101 751 868 1.46e-12 63.9
Msa1015870 AT1G29740.2 35.577 104 48 3 1 85 844 947 1.78e-12 63.5
Msa1015870 AT1G29740.1 35.577 104 48 3 1 85 844 947 1.80e-12 63.5
Msa1015870 AT1G56130.2 33.962 106 53 1 1 89 861 966 2.45e-12 63.2
Msa1015870 AT1G56130.1 33.962 106 53 1 1 89 713 818 2.64e-12 63.2
Msa1015870 AT1G56130.3 33.962 106 53 1 1 89 662 767 2.70e-12 63.2
Msa1015870 AT1G61430.10 58.333 48 20 0 1 48 635 682 4.26e-12 62.4
Msa1015870 AT1G61430.8 58.333 48 20 0 1 48 658 705 4.40e-12 62.4
Msa1015870 AT1G61430.7 58.333 48 20 0 1 48 658 705 4.40e-12 62.4
Msa1015870 AT1G61430.5 58.333 48 20 0 1 48 661 708 4.57e-12 62.4
Msa1015870 AT1G70740.2 57.692 52 20 1 1 52 218 267 5.33e-12 62.0
Msa1015870 AT1G29750.1 37.500 104 45 3 1 85 835 937 6.37e-12 62.0
Msa1015870 AT1G29750.2 37.500 104 45 3 1 85 850 952 8.85e-12 61.6
Msa1015870 AT2G48010.1 30.709 127 67 3 1 106 455 581 1.72e-11 60.5
Msa1015870 AT1G29720.1 31.776 107 55 1 1 89 840 946 1.86e-11 60.5
Msa1015870 AT1G56140.1 29.457 129 74 1 1 112 860 988 3.15e-11 60.1
Msa1015870 AT1G69730.1 38.235 68 42 0 1 68 616 683 4.11e-11 59.7
Msa1015870 AT4G00970.2 58.333 48 20 0 1 48 515 562 4.78e-11 59.3
Msa1015870 AT4G23190.2 54.545 44 20 0 1 44 519 562 5.03e-11 59.3
Msa1015870 AT1G16670.1 32.075 106 54 2 1 88 212 317 5.46e-11 58.9

Find 19 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTATGATCATATATTTC+TGG 0.170677 7_1:+30672921 None:intergenic
TATGCTTAACAGTGAAATTA+TGG 0.201195 7_1:-30672708 Msa1015870:CDS
GAAAATTCTCTGACTTTGTT+AGG 0.272025 7_1:-30673090 Msa1015870:CDS
TGTGATACTCAAAGCATTAT+TGG 0.285114 7_1:+30672598 None:intergenic
TTGAGTATCACAGACATTCA+TGG 0.375383 7_1:-30672587 Msa1015870:CDS
AAATCAGACGTCTTCAGCTT+TGG 0.376486 7_1:-30673168 Msa1015870:CDS
AGGAATGCAGGTTCCCTTGC+AGG 0.396873 7_1:+30672677 None:intergenic
AGCTGCGGACAGACCAACTA+TGG 0.407904 7_1:-30672744 Msa1015870:CDS
TTGCTAATAGAGATTGTTAG+TGG 0.419832 7_1:-30673141 Msa1015870:CDS
GAAATCACTGCAGCCATAGT+TGG 0.483331 7_1:+30672731 None:intergenic
TTCTGTCTCAGTAGGAATGC+AGG 0.500535 7_1:+30672665 None:intergenic
ACTCCTTGCATTGCATACTC+TGG 0.542946 7_1:+30673201 None:intergenic
TTAGGCTTGGATTCAATGGA+AGG 0.562134 7_1:-30672970 Msa1015870:intron
TCAACATATTCTGTCTCAGT+AGG 0.567909 7_1:+30672657 None:intergenic
TTATGGACATTCCTCCTGCA+AGG 0.577837 7_1:-30672691 Msa1015870:CDS
TATGGACATTCCTCCTGCAA+GGG 0.619602 7_1:-30672690 Msa1015870:CDS
GCTCCAGAGTATGCAATGCA+AGG 0.630661 7_1:-30673204 Msa1015870:CDS
AATGCAGGTTCCCTTGCAGG+AGG 0.684918 7_1:+30672680 None:intergenic
ATGTGTACAAGAATCAGCTG+CGG 0.721609 7_1:-30672759 Msa1015870:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTTTGTTTCATTTT+AGG - chr7_1:30672799-30672818 Msa1015870:intron 15.0%
!! TTACTATGATCATATATTTC+TGG + chr7_1:30672869-30672888 None:intergenic 20.0%
!! TATATGATCATAGTAATCAT+AGG - chr7_1:30672873-30672892 Msa1015870:intron 20.0%
!!! TTTTTGTTTCATTTTAGGCT+TGG - chr7_1:30672804-30672823 Msa1015870:intron 25.0%
! TATGCTTAACAGTGAAATTA+TGG - chr7_1:30673079-30673098 Msa1015870:intron 25.0%
TTGCTAATAGAGATTGTTAG+TGG - chr7_1:30672646-30672665 Msa1015870:CDS 30.0%
GAAAATTCTCTGACTTTGTT+AGG - chr7_1:30672697-30672716 Msa1015870:CDS 30.0%
! TGTGATACTCAAAGCATTAT+TGG + chr7_1:30673192-30673211 None:intergenic 30.0%
!!! TGCAATGCAAGGAGTATTTT+CGG - chr7_1:30672594-30672613 Msa1015870:CDS 35.0%
! CATTTTAGGCTTGGATTCAA+TGG - chr7_1:30672813-30672832 Msa1015870:intron 35.0%
TCAACATATTCTGTCTCAGT+AGG + chr7_1:30673133-30673152 None:intergenic 35.0%
TTGAGTATCACAGACATTCA+TGG - chr7_1:30673200-30673219 Msa1015870:CDS 35.0%
AAATCAGACGTCTTCAGCTT+TGG - chr7_1:30672619-30672638 Msa1015870:CDS 40.0%
TTAGGCTTGGATTCAATGGA+AGG - chr7_1:30672817-30672836 Msa1015870:intron 40.0%
ATGTGTACAAGAATCAGCTG+CGG - chr7_1:30673028-30673047 Msa1015870:intron 40.0%
ACTCCTTGCATTGCATACTC+TGG + chr7_1:30672589-30672608 None:intergenic 45.0%
GAAATCACTGCAGCCATAGT+TGG + chr7_1:30673059-30673078 None:intergenic 45.0%
TTATGGACATTCCTCCTGCA+AGG - chr7_1:30673096-30673115 Msa1015870:CDS 45.0%
TATGGACATTCCTCCTGCAA+GGG - chr7_1:30673097-30673116 Msa1015870:CDS 45.0%
TTCTGTCTCAGTAGGAATGC+AGG + chr7_1:30673125-30673144 None:intergenic 45.0%
GCTCCAGAGTATGCAATGCA+AGG - chr7_1:30672583-30672602 Msa1015870:CDS 50.0%
AGCTGCGGACAGACCAACTA+TGG - chr7_1:30673043-30673062 Msa1015870:intron 55.0%
AATGCAGGTTCCCTTGCAGG+AGG + chr7_1:30673110-30673129 None:intergenic 55.0%
AGGAATGCAGGTTCCCTTGC+AGG + chr7_1:30673113-30673132 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 30672580 30673229 30672580 ID=Msa1015870;Name=Msa1015870
chr7_1 mRNA 30672580 30673229 30672580 ID=Msa1015870-mRNA-1;Parent=Msa1015870;Name=Msa1015870-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|3|0|132
chr7_1 exon 30673086 30673229 30673086 ID=Msa1015870-mRNA-1:exon:6160;Parent=Msa1015870-mRNA-1
chr7_1 exon 30672925 30672988 30672925 ID=Msa1015870-mRNA-1:exon:6159;Parent=Msa1015870-mRNA-1
chr7_1 exon 30672580 30672770 30672580 ID=Msa1015870-mRNA-1:exon:6158;Parent=Msa1015870-mRNA-1
chr7_1 CDS 30673086 30673229 30673086 ID=Msa1015870-mRNA-1:cds;Parent=Msa1015870-mRNA-1
chr7_1 CDS 30672925 30672988 30672925 ID=Msa1015870-mRNA-1:cds;Parent=Msa1015870-mRNA-1
chr7_1 CDS 30672580 30672770 30672580 ID=Msa1015870-mRNA-1:cds;Parent=Msa1015870-mRNA-1
Gene Sequence

>Msa1015870

ATGGCTCCAGAGTATGCAATGCAAGGAGTATTTTCGGATAAATCAGACGTCTTCAGCTTTGGAGTTTTGCTAATAGAGATTGTTAGTGGAAGACGAAACTCAAGCTTTTATGAACATGAAAATTCTCTGACTTTGTTAGGATTTGCTTGGATTCAATGGAAGGAAGACAATATTTTATCTTTGATAGAACCAGAAATATATGATCATAAATCAGCTGCGGACAGACCAACTATGGCTGCAGTGATTTCTATGCTTAACAGTGAAATTATGGACATTCCTCCTGCAAGGGAACCTGCATTCCTACTGAGACAGAATATGTTGAATACAGTTTCTTCTGAAGAAAGAAATGAATTTTACTCCAATAATGCTTTGAGTATCACAGACATTCATGGAAGATAA
Protein sequence

>Msa1015870

MAPEYAMQGVFSDKSDVFSFGVLLIEIVSGRRNSSFYEHENSLTLLGFAWIQWKEDNILSLIEPEIYDHKSAADRPTMAAVISMLNSEIMDIPPAREPAFLLRQNMLNTVSSEERNEFYSNNALSITDIHGR*