AlfalfaGEDB | Msa1016440

M. sativa cultivar zhongmu-4 / Msa1016440

KEGG: K08867
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00917.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1016440	XP_003616019.1	81.373	102	11	2	409	508	317	412	5.79e-41	167
Msa1016440	XP_003616019.1	94.554	202	8	1	219	420	49	247	1.75e-129	400

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1016440	sp\|Q9SCU5\|WNK5_ARATH	78.218	202	41	1	219	420	47	245	3.61e-111	345
Msa1016440	sp\|Q9SCU5\|WNK5_ARATH	56.322	87	32	1	416	502	330	410	2.78e-20	97.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1016440	G7K0S2	81.373	102	11	2	409	508	317	412	2.77e-41	167
Msa1016440	G7K0S2	94.554	202	8	1	219	420	49	247	8.37e-130	400

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1016440	MtrunA17_Chr5g0432541	94.554	202	8	1	219	420	49	247	1.61e-133	400
Msa1016440	MtrunA17_Chr5g0432541	81.373	102	11	2	409	508	317	412	5.33e-45	167
Msa1016440	MtrunA17_Chr6g0455931	81.683	202	34	1	219	420	51	249	1.49e-107	334
Msa1016440	MtrunA17_Chr6g0455931	58.140	86	30	1	411	496	321	400	4.25e-22	100
Msa1016440	MtrunA17_Chr7g0244601	71.287	202	55	1	219	420	50	248	2.21e-98	310
Msa1016440	MtrunA17_Chr7g0244601	48.101	79	35	1	416	494	322	394	7.22e-15	77.8
Msa1016440	MtrunA17_Chr7g0273851	71.134	194	55	1	221	414	48	240	1.27e-97	312
Msa1016440	MtrunA17_Chr7g0273851	43.820	89	42	3	410	498	356	436	2.60e-12	69.7
Msa1016440	MtrunA17_Chr1g0190951	70.619	194	56	1	221	414	48	240	6.87e-96	308
Msa1016440	MtrunA17_Chr1g0190951	49.351	77	32	2	423	499	370	439	2.24e-13	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1016440	AT3G51630.1	78.218	202	41	1	219	420	47	245	3.66e-112	345
Msa1016440	AT3G51630.1	56.322	87	32	1	416	502	330	410	2.82e-21	97.8
Msa1016440	AT3G51630.2	78.218	202	41	1	219	420	47	245	3.66e-112	345
Msa1016440	AT3G51630.2	56.322	87	32	1	416	502	330	410	2.82e-21	97.8
Msa1016440	AT5G58350.1	73.892	203	50	1	218	420	40	239	1.88e-104	325
Msa1016440	AT5G58350.1	50.000	88	37	2	416	503	318	398	8.77e-16	80.9
Msa1016440	AT5G28080.2	70.619	194	56	1	221	414	49	241	2.29e-99	310
Msa1016440	AT5G28080.2	43.617	94	46	2	409	502	359	445	1.66e-13	73.6
Msa1016440	AT3G04910.2	71.134	194	55	1	221	414	25	217	6.24e-97	309
Msa1016440	AT3G04910.2	47.368	76	33	2	423	498	376	444	4.50e-12	69.3

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Find 111 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAGACCTTGTAAGATT+TGG	0.309427	7_1:-33000223	None:intergenic
AAATCCCCATTGTTTCTTTG+AGG	0.428316	7_1:-32998713	None:intergenic
AACACCGGAGTTCATGGCAC+CGG	0.601512	7_1:+33000591	Msa1016440:CDS
AAGAATTGGAGATTTCTGAT+TGG	0.452979	7_1:+33001127	Msa1016440:CDS
AATGGAGATGGTAAAAGAAT+TGG	0.394174	7_1:+33001113	Msa1016440:CDS
AATTGGTTCTGTTGATGCTT+TGG	0.327722	7_1:+33001663	Msa1016440:CDS
ACATTGATGATATATACTAA+AGG	0.615312	7_1:+32999135	Msa1016440:CDS
ACCATCTCGTTTCCGTTCGT+CGG	0.471078	7_1:+32999515	Msa1016440:CDS
ACCGGTGCTTGAGTGTGCTT+AGG	0.539236	7_1:-32999881	None:intergenic
ACGGAAACGAGATGGTGAGG+AGG	0.620190	7_1:-32999508	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTATTGGAAATCCTAATGA+AGG	+	chr7_1:32995794-32995813	Msa1016440:CDS	30.0%
AGTTTAAAAGTAACGAAGTG+TGG	+	chr7_1:32995946-32995965	Msa1016440:intron	30.0%
GTTTAAAAGTAACGAAGTGT+GGG	+	chr7_1:32995947-32995966	Msa1016440:intron	30.0%
AAGAACAAGTTTGATGAACA+TGG	+	chr7_1:32996023-32996042	Msa1016440:intron	30.0%
AGAACAAGTTTGATGAACAT+GGG	+	chr7_1:32996024-32996043	Msa1016440:intron	30.0%
CTAGGATCAATAAATCCTTT+AGG	-	chr7_1:32996263-32996282	None:intergenic	30.0%
TTCAATCTGTACACATGATT+TGG	-	chr7_1:32996290-32996309	None:intergenic	30.0%
TTGTTTGTAAAGGATGACAA+TGG	+	chr7_1:32996413-32996432	Msa1016440:intron	30.0%
TGTTTGTAAAGGATGACAAT+GGG	+	chr7_1:32996414-32996433	Msa1016440:intron	30.0%
AATGTCATCAACATAAACCT+GGG	-	chr7_1:32996453-32996472	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	32995683	33001744	32995683	ID=Msa1016440;Name=Msa1016440
chr7_1	mRNA	32995683	33001744	32995683	ID=Msa1016440-mRNA-1;Parent=Msa1016440;Name=Msa1016440-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0\|0\|0\|0.45\|0.4\|0.63\|11\|0\|553
chr7_1	exon	32995683	32995815	32995683	ID=Msa1016440-mRNA-1:exon:6452;Parent=Msa1016440-mRNA-1
chr7_1	exon	32998692	32998899	32998692	ID=Msa1016440-mRNA-1:exon:6453;Parent=Msa1016440-mRNA-1
chr7_1	exon	32999134	32999306	32999134	ID=Msa1016440-mRNA-1:exon:6454;Parent=Msa1016440-mRNA-1
chr7_1	exon	32999440	32999591	32999440	ID=Msa1016440-mRNA-1:exon:6455;Parent=Msa1016440-mRNA-1
chr7_1	exon	32999801	32999994	32999801	ID=Msa1016440-mRNA-1:exon:6456;Parent=Msa1016440-mRNA-1
chr7_1	exon	33000169	33000392	33000169	ID=Msa1016440-mRNA-1:exon:6457;Parent=Msa1016440-mRNA-1
chr7_1	exon	33000590	33000747	33000590	ID=Msa1016440-mRNA-1:exon:6458;Parent=Msa1016440-mRNA-1
chr7_1	exon	33000857	33000944	33000857	ID=Msa1016440-mRNA-1:exon:6459;Parent=Msa1016440-mRNA-1
chr7_1	exon	33001052	33001279	33001052	ID=Msa1016440-mRNA-1:exon:6460;Parent=Msa1016440-mRNA-1
chr7_1	exon	33001345	33001352	33001345	ID=Msa1016440-mRNA-1:exon:6461;Parent=Msa1016440-mRNA-1
chr7_1	exon	33001649	33001744	33001649	ID=Msa1016440-mRNA-1:exon:6462;Parent=Msa1016440-mRNA-1
chr7_1	CDS	32995683	32995815	32995683	ID=Msa1016440-mRNA-1:cds;Parent=Msa1016440-mRNA-1
chr7_1	CDS	32998692	32998899	32998692	ID=Msa1016440-mRNA-1:cds;Parent=Msa1016440-mRNA-1
chr7_1	CDS	32999134	32999306	32999134	ID=Msa1016440-mRNA-1:cds;Parent=Msa1016440-mRNA-1
chr7_1	CDS	32999440	32999591	32999440	ID=Msa1016440-mRNA-1:cds;Parent=Msa1016440-mRNA-1
chr7_1	CDS	32999801	32999994	32999801	ID=Msa1016440-mRNA-1:cds;Parent=Msa1016440-mRNA-1
chr7_1	CDS	33000169	33000392	33000169	ID=Msa1016440-mRNA-1:cds;Parent=Msa1016440-mRNA-1
chr7_1	CDS	33000590	33000747	33000590	ID=Msa1016440-mRNA-1:cds;Parent=Msa1016440-mRNA-1
chr7_1	CDS	33000857	33000944	33000857	ID=Msa1016440-mRNA-1:cds;Parent=Msa1016440-mRNA-1
chr7_1	CDS	33001052	33001279	33001052	ID=Msa1016440-mRNA-1:cds;Parent=Msa1016440-mRNA-1
chr7_1	CDS	33001345	33001352	33001345	ID=Msa1016440-mRNA-1:cds;Parent=Msa1016440-mRNA-1
chr7_1	CDS	33001649	33001744	33001649	ID=Msa1016440-mRNA-1:cds;Parent=Msa1016440-mRNA-1

Gene Sequence

>Msa1016440

GTGACTGAGTCTGAACCAGATAAAGATGAAAATAATGAAACTGAGCCAGATCAAATGTCCACTAAGAAGGGTCCTTCCACACGAGTTCAGAAGAATCATCCATTAGAACTTGTTATTGGAAATCCTAATGAAGTAAGCAACCACGGATTTTGTGCCTCAAAGAAACAATGGGGATTTTCAAATTTCATATCTTTAAGTGAACTCAATGAAGCAGCAGCTGGATATATTAAGGACGACGCTATAACCATGAAGGTTGAAATATTTAAGATGGATGTAATCATCGAAGCAGAACTTAATGAAGCAGAAAAAGGAATTATTAAAGATGGTGCTACGCCTCCAATGACATTGATGATATATACTAAAGGACTTGATTCAGATTTGGTCTTAGACAACCATCTAACTTTAATGCTGCAGCTAACAAATTGGAATAAGTTCCCATCAAATTCAAGAGTGGATGCAAGTTTCAAGTTTAAAATTTTAGACCAGCATCATAAAAAATATTATGAGAAAACAGAAAACTTCAAGTTTTTGGTCTCAAAAACATCATGGTCATCCTCAAACTTCATCTCTCTGAGTGAACTCCCTCCTCACCATCTCGTTTCCGTTCGTCGGCAGCAACGCCGTCGTTTGTGTCTCCAGATCGCCGGTCGTCGTTTGGTTGTGGAGGTAGCATGGAACCAAGTCAGACTCAACGAGGTACTAAACACGCCAGTTGATTTGCAGCGCCTTTACTCGGAGGTTCATCTCCTAAGCACACTCAAGCACCGGTCGATCATGCGATTCTACACATCTTGGATTGATATTGATAACAAGAACTTCAATTTTGTTACAGAAATGTTCACATCAGGCTCACTGAGAGAGTACCAGAGGAAATATAAGCGAGTAAGTTTACAAGCAATAAAGAGTTGGGCGCGCCAAATCTTACAAGGTCTAGTTTATTTACATGGCCATGATCCACCTGTAATCCATAGGAACCTAAAATGTGATAACATATTTGTCAATGGTCATCTTGGACAAGTGAAAATTGGTGACCATGGACTAGCTGCAATTCTCCAAGGTTCTCAATCAGCTCATAGTGTTATAGGAACACCGGAGTTCATGGCACCGGAAATGTATGAGGAAGAATACAATGAACTTGGTGATGTTTACTCATTTGGCATGTGTGTATTGGAAATGCTCACATATGATTATCCATATAGTGAATGTACTAATCCAGCACAGATATACAAGAAAGTGACATCGAAAGTCATAGGAAAGTTGAATCCTGAAGATGATACTATCTTTCTCAAAGTACAAATTTCTGATAAGAAATGTATGTATTCTTTTTTTAGTTCTGTTAGTAATGTATATTTTCCCTTTGATATTCTCACTGATACTCCCATTGATGTTGCAATGGAGATGGTAAAAGAATTGGAGATTTCTGATTGGGATCCTTTAGATATTGCAAATATGATCAATAGAGAGATATCTGCACTTTTACCACATAGATGGAAAAATGATTGCTCAGACCACATGTTCAAATATGATCAATTGGAGATATCTGCCTTGGACTGGCCATATGGCATAGTAATGATTATTACAATTGGTTCTGTTGATGCTTTGGGCAATAGCGAGGTTATTGGCAAGGAGGAAAAATTGAAGGTTGTTGATAACAAATTCTAG

Protein sequence

>Msa1016440

VTESEPDKDENNETEPDQMSTKKGPSTRVQKNHPLELVIGNPNEVSNHGFCASKKQWGFSNFISLSELNEAAAGYIKDDAITMKVEIFKMDVIIEAELNEAEKGIIKDGATPPMTLMIYTKGLDSDLVLDNHLTLMLQLTNWNKFPSNSRVDASFKFKILDQHHKKYYEKTENFKFLVSKTSWSSSNFISLSELPPHHLVSVRRQQRRRLCLQIAGRRLVVEVAWNQVRLNEVLNTPVDLQRLYSEVHLLSTLKHRSIMRFYTSWIDIDNKNFNFVTEMFTSGSLREYQRKYKRVSLQAIKSWARQILQGLVYLHGHDPPVIHRNLKCDNIFVNGHLGQVKIGDHGLAAILQGSQSAHSVIGTPEFMAPEMYEEEYNELGDVYSFGMCVLEMLTYDYPYSECTNPAQIYKKVTSKVIGKLNPEDDTIFLKVQISDKKCMYSFFSSVSNVYFPFDILTDTPIDVAMEMVKELEISDWDPLDIANMINREISALLPHRWKNDCSDHMFKYDQLEISALDWPYGIVMIITIGSVDALGNSEVIGKEEKLKVVDNKF*