AlfalfaGEDB | Msa1017090

M. sativa cultivar zhongmu-4 / Msa1017090

KEGG: K11420
GO: -
PFAM: PF02182.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017090	XP_013448347.2	88.745	542	54	2	1	538	1	539	0.0	985

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017090	sp\|O82175\|SUVH5_ARATH	42.857	539	187	16	76	538	301	794	4.46e-117	367

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017090	A0A396H1J2	88.745	542	54	2	1	538	1	539	0.0	985

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TFs/TRs:

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Gene ID	Type	Classification
Msa1017090	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017090	MtrunA17_Chr7g0232811	88.745	542	54	2	1	538	1	539	0.0	985
Msa1017090	MtrunA17_Chr7g0232841	86.004	543	56	5	1	538	1	528	0.0	912
Msa1017090	MtrunA17_Chr7g0232981	80.479	543	74	6	1	538	1	516	0.0	839
Msa1017090	MtrunA17_Chr7g0232861	85.537	242	33	1	7	248	3	242	1.15e-144	416
Msa1017090	MtrunA17_Chr7g0232761	75.269	279	48	3	1	263	1	274	5.91e-134	390
Msa1017090	MtrunA17_Chr5g0399801	44.216	536	203	12	77	538	576	1089	2.26e-129	404
Msa1017090	MtrunA17_Chr4g0003511	42.293	532	216	11	78	538	541	1052	1.47e-121	382
Msa1017090	MtrunA17_Chr4g0003501	41.682	535	215	12	77	538	445	955	2.39e-118	371
Msa1017090	MtrunA17_Chr7g0232751	92.437	119	9	0	420	538	1	119	6.26e-76	235
Msa1017090	MtrunA17_Chr1g0170651	31.876	549	235	15	81	538	46	546	3.22e-69	233

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017090	AT2G35160.5	42.831	537	190	15	76	538	265	758	2.13e-118	367
Msa1017090	AT2G35160.2	42.857	539	187	16	76	538	301	794	4.54e-118	367
Msa1017090	AT2G35160.3	42.857	539	187	16	76	538	301	794	4.54e-118	367
Msa1017090	AT2G35160.1	42.857	539	187	16	76	538	301	794	4.54e-118	367
Msa1017090	AT2G35160.4	42.857	539	187	16	76	538	301	794	4.54e-118	367
Msa1017090	AT2G22740.2	40.706	538	221	15	82	538	270	790	2.69e-111	349
Msa1017090	AT2G22740.1	40.706	538	221	15	82	538	270	790	2.69e-111	349
Msa1017090	AT5G13960.2	32.669	502	242	14	119	538	3	490	8.34e-61	208
Msa1017090	AT5G13960.1	32.669	502	242	14	119	538	137	624	1.48e-60	211
Msa1017090	AT1G73100.1	30.600	500	248	15	113	533	185	664	1.46e-59	209

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Find 94 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTTCGTTTATACAG+GGG	0.661822	7_1:-35511326	Msa1017090:CDS
AAAATTATTGGAAATGTCCC+TGG	0.496911	7_1:-35511502	Msa1017090:CDS
AAAGTCAGCTCATTCATGCT+CGG	0.596521	7_1:+35510392	None:intergenic
AAATGATTTGTGTTGTGGGT+TGG	0.522717	7_1:+35511852	None:intergenic
AACATTTCGAGCAAACAAAT+TGG	0.261209	7_1:+35510475	None:intergenic
AACGGTGGTGGTGGTGCACG+TGG	0.573546	7_1:-35511193	Msa1017090:CDS
AACTTTATAATAACTCTAAT+AGG	0.276626	7_1:+35511226	None:intergenic
AAGACGAAAGTATGTTATTG+TGG	0.504531	7_1:-35510320	Msa1017090:CDS
AAGACTAAGGCGAAAGGATG+GGG	0.542189	7_1:-35510815	Msa1017090:CDS
AAGTTTAATTCAAAGAACGG+TGG	0.694907	7_1:-35511208	Msa1017090:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTTCAGTAAAGTTCCTAT+TGG	+	chr7_1:35510353-35510372	None:intergenic	30.0%
TTTCTTTCTTCTTGAGTCAT+CGG	+	chr7_1:35510521-35510540	None:intergenic	30.0%
AGAGGAAAATTCATTCACAA+TGG	-	chr7_1:35510643-35510662	Msa1017090:CDS	30.0%
GAGGAAAATTCATTCACAAT+GGG	-	chr7_1:35510644-35510663	Msa1017090:CDS	30.0%
AAAATTATTGGAAATGTCCC+TGG	-	chr7_1:35510670-35510689	Msa1017090:CDS	30.0%
AAGTTTAATTCAAAGAACGG+TGG	-	chr7_1:35510964-35510983	Msa1017090:CDS	30.0%
ATACGATTAACCACACATAT+AGG	+	chr7_1:35511153-35511172	None:intergenic	30.0%
ACATTTCGAGCAAACAAATT+GGG	+	chr7_1:35511699-35511718	None:intergenic	30.0%
AACATTTCGAGCAAACAAAT+TGG	+	chr7_1:35511700-35511719	None:intergenic	30.0%
TCTTTCAGTAAAGTTCCTAT+TGG	+	chr7_1:35510353-35510372	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	35510289	35511905	35510289	ID=Msa1017090;Name=Msa1017090
chr7_1	mRNA	35510289	35511905	35510289	ID=Msa1017090-mRNA-1;Parent=Msa1017090;Name=Msa1017090-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|538
chr7_1	exon	35510289	35511905	35510289	ID=Msa1017090-mRNA-1:exon:6746;Parent=Msa1017090-mRNA-1
chr7_1	CDS	35510289	35511905	35510289	ID=Msa1017090-mRNA-1:cds;Parent=Msa1017090-mRNA-1

Gene Sequence

>Msa1017090

ATGACTAAGACGAAGCCCTCGTCTTCCACTACCAACCCACAACACAAATCATTTCAAGTCGCCAATAGGAACTTTACTGAAAGAGCATTGTTGTTCAAGAATGTCAGCACAATGAGAGTATTGTCAAAGGTTCAAAGAAACACTGAAACCAATGAAACACCAATCAAGAAACTGCATTTAAAACGTCGTTGTGAAGATGCAACTTCAGATAACAAGCCGTCTTTGACTTCCGATGACTCAAGAAGAAAGAAAGTAAAAACTACATTAGGTAACTTCCGTGCTCTCTGTGGAAAACTCGGTAAGGAAATTACAGCCGACGCGCTTCCTATCAAAGTGTCACGGATTCTCAAAAGCAGAGGAAAATTCATTCACAATGGGAAAAAAATTATTGGAAATGTCCCTGGAATTGAAGTAGGTGACAAGTTTCAGTATTGGCAAGAACTCAACGTTGTTGGTCTTCATCGTCAGAATCTAAGTCTCATTGATTACGTGATAAAGGATGATAATTTAATTGCAACTAGCATTGTTTCTTGTCATTTTGATGATATGGATGATACAAAAGTGTTCGTTTATACAGGGGAAGGAGGTAATGTCATTAATTCTGGAGAATGTGATAAAGGGAATCTTGCTCTGATGAATAGTTTTGCTGTTAAGAATCCTATTAGAGTTATTATAAAGTTTAATTCAAAGAACGGTGGTGGTGGTGCACGTGGTGGAGGTGAGGTGTATTGTTACTATGGTCTTTATAAAGTCGAATCTATTTGGGAAAAAAAAGGGAAATTAGATTTTAAATTTTGTTTGGTTAGATTGCCTGATCAGAAATTTTTTGTTATAGATATTTCCAATGGAAAAGAAGCTGTTCCTATATGTGTGGTTAATCGTATAGATTCTGGCAAGGTTCCATATTTTCAATACATTACTCGTAACATTTATCCTGAATGGCTTTTCGAAGATTCCTCTGTTGGGCGTAAATGTTCTGATTCAATGAAATTTGCCTGTGCTCTTAAGAGTGGAGGGAAAATTCCTAGAGTAAAGAAAAATGAGATTAAATTTAAGCTTCAAATTTTCAAGACTAAGGCGAAAGGATGGGGTGTGAGATCAGAGAATGCAATTGCTTCTGGAAGTTTTATTTGTGAGTATTTAGGTGAGATAATTGAAGATCAGGAAGCTTTGAAAATAGTTGATAATGATGAGTATTTATTTAATATTGGCAATTATATTCACAAGGTCTATAGGTCGTGGGAAGAGGATTCATATATGGTTGATAGTAAGGAGATGAGTTCATATCAACCCTTAGAAGCTTCAAGTGGTAAAGAGGCCGTTGATGATCGATGTGATAGTGGTAGGTTTACAATTGATGCTGCTAAGTATGGTAATGTGGCAAGGTTTATCAACCATAGTTGTTCTCCCAATTTGTTTGCTCGAAATGTTCTTTACAATGATGATGATCTGAGGATTCCACACATCATGCTATATGCAGCTGAGAACATTCCGAGCATGAATGAGCTGACTTTGAATTACAATTACAAGATCGATCAAGTTATTGATTCAAATGGAAATTTAAAGACGAAAGTATGTTATTGTGGAGCTTCTGAATGCATCCGTCGACTGTATTGA

Protein sequence

>Msa1017090

MTKTKPSSSTTNPQHKSFQVANRNFTERALLFKNVSTMRVLSKVQRNTETNETPIKKLHLKRRCEDATSDNKPSLTSDDSRRKKVKTTLGNFRALCGKLGKEITADALPIKVSRILKSRGKFIHNGKKIIGNVPGIEVGDKFQYWQELNVVGLHRQNLSLIDYVIKDDNLIATSIVSCHFDDMDDTKVFVYTGEGGNVINSGECDKGNLALMNSFAVKNPIRVIIKFNSKNGGGGARGGGEVYCYYGLYKVESIWEKKGKLDFKFCLVRLPDQKFFVIDISNGKEAVPICVVNRIDSGKVPYFQYITRNIYPEWLFEDSSVGRKCSDSMKFACALKSGGKIPRVKKNEIKFKLQIFKTKAKGWGVRSENAIASGSFICEYLGEIIEDQEALKIVDNDEYLFNIGNYIHKVYRSWEEDSYMVDSKEMSSYQPLEASSGKEAVDDRCDSGRFTIDAAKYGNVARFINHSCSPNLFARNVLYNDDDLRIPHIMLYAAENIPSMNELTLNYNYKIDQVIDSNGNLKTKVCYCGASECIRRLY*