Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017220 | XP_013448429.1 | 59.211 | 76 | 30 | 1 | 17 | 92 | 386 | 460 | 2.01e-12 | 82.8 |
| Msa1017220 | XP_013448429.1 | 86.337 | 505 | 29 | 1 | 2 | 466 | 560 | 1064 | 0.0 | 879 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017220 | sp|F4I8S3|CLSY3_ARATH | 41.822 | 428 | 208 | 10 | 72 | 466 | 691 | 1110 | 1.17e-92 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017220 | A0A072TZ61 | 59.211 | 76 | 30 | 1 | 17 | 92 | 386 | 460 | 9.61e-13 | 82.8 |
| Msa1017220 | A0A072TZ61 | 86.337 | 505 | 29 | 1 | 2 | 466 | 560 | 1064 | 0.0 | 879 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1017220 | TR | SNF2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017220 | MtrunA17_Chr7g0232971 | 69.478 | 498 | 117 | 6 | 1 | 466 | 522 | 1016 | 0.0 | 678 |
| Msa1017220 | MtrunA17_Chr7g0233021 | 67.273 | 495 | 126 | 5 | 3 | 466 | 464 | 953 | 0.0 | 642 |
| Msa1017220 | MtrunA17_Chr7g0225791 | 66.803 | 488 | 131 | 8 | 5 | 466 | 522 | 1004 | 0.0 | 637 |
| Msa1017220 | MtrunA17_Chr7g0233031 | 65.531 | 499 | 132 | 5 | 1 | 466 | 474 | 965 | 0.0 | 627 |
| Msa1017220 | MtrunA17_Chr7g0232991 | 83.060 | 366 | 22 | 1 | 141 | 466 | 15 | 380 | 0.0 | 599 |
| Msa1017220 | MtrunA17_Chr4g0047081 | 64.609 | 486 | 144 | 6 | 3 | 466 | 475 | 954 | 0.0 | 582 |
| Msa1017220 | MtrunA17_Chr7g0233001 | 61.224 | 245 | 72 | 4 | 249 | 471 | 1 | 244 | 2.77e-91 | 288 |
| Msa1017220 | MtrunA17_Chr1g0191141 | 36.386 | 415 | 230 | 10 | 30 | 419 | 351 | 756 | 1.27e-66 | 232 |
| Msa1017220 | MtrunA17_Chr7g0224051 | 36.386 | 415 | 220 | 12 | 62 | 444 | 389 | 791 | 1.72e-62 | 220 |
| Msa1017220 | MtrunA17_Chr3g0114161 | 36.364 | 385 | 206 | 11 | 69 | 419 | 520 | 899 | 7.86e-61 | 216 |
| Msa1017220 | MtrunA17_Chr5g0437621 | 35.106 | 376 | 213 | 8 | 69 | 419 | 584 | 953 | 4.17e-59 | 211 |
| Msa1017220 | MtrunA17_Chr8g0352361 | 29.521 | 376 | 206 | 13 | 109 | 465 | 282 | 617 | 5.45e-40 | 154 |
| Msa1017220 | MtrunA17_Chr2g0296421 | 28.657 | 335 | 181 | 8 | 109 | 426 | 432 | 725 | 5.94e-37 | 145 |
| Msa1017220 | MtrunA17_Chr7g0224021 | 44.554 | 101 | 52 | 3 | 184 | 284 | 17 | 113 | 8.03e-19 | 82.4 |
| Msa1017220 | MtrunA17_Chr7g0224031 | 50.000 | 74 | 37 | 0 | 346 | 419 | 42 | 115 | 3.14e-14 | 72.4 |
| Msa1017220 | MtrunA17_Chr5g0393461 | 24.138 | 232 | 114 | 6 | 201 | 411 | 186 | 376 | 6.14e-12 | 68.2 |
| Msa1017220 | MtrunA17_Chr1g0183681 | 26.950 | 282 | 174 | 9 | 142 | 409 | 338 | 601 | 1.11e-11 | 67.8 |
| Msa1017220 | MtrunA17_Chr4g0052341 | 31.088 | 193 | 110 | 9 | 234 | 418 | 766 | 943 | 5.62e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017220 | AT1G05490.1 | 41.822 | 428 | 208 | 10 | 72 | 466 | 691 | 1110 | 1.19e-93 | 310 |
| Msa1017220 | AT3G24340.1 | 42.584 | 418 | 203 | 10 | 64 | 466 | 448 | 843 | 6.32e-92 | 303 |
| Msa1017220 | AT3G42670.2 | 37.265 | 373 | 206 | 10 | 69 | 419 | 541 | 907 | 3.69e-65 | 229 |
| Msa1017220 | AT3G42670.3 | 37.265 | 373 | 206 | 10 | 69 | 419 | 541 | 907 | 3.69e-65 | 229 |
| Msa1017220 | AT3G42670.1 | 37.265 | 373 | 206 | 10 | 69 | 419 | 541 | 907 | 3.69e-65 | 229 |
| Msa1017220 | AT3G42670.4 | 37.566 | 378 | 200 | 10 | 69 | 419 | 541 | 909 | 6.58e-65 | 228 |
| Msa1017220 | AT5G20420.1 | 36.148 | 379 | 202 | 10 | 69 | 419 | 547 | 913 | 4.19e-60 | 214 |
| Msa1017220 | AT2G16390.2 | 29.781 | 319 | 166 | 9 | 109 | 413 | 273 | 547 | 6.52e-40 | 154 |
| Msa1017220 | AT2G16390.1 | 29.781 | 319 | 166 | 9 | 109 | 413 | 270 | 544 | 8.19e-40 | 154 |
| Msa1017220 | AT2G21450.2 | 28.076 | 317 | 176 | 6 | 109 | 413 | 192 | 468 | 3.14e-38 | 149 |
| Msa1017220 | AT2G21450.3 | 28.076 | 317 | 176 | 6 | 109 | 413 | 94 | 370 | 3.69e-38 | 148 |
| Msa1017220 | AT2G21450.1 | 28.076 | 317 | 176 | 6 | 109 | 413 | 185 | 461 | 3.83e-38 | 149 |
| Msa1017220 | AT3G19210.3 | 26.977 | 215 | 125 | 5 | 201 | 409 | 182 | 370 | 6.58e-14 | 75.1 |
| Msa1017220 | AT3G19210.1 | 26.977 | 215 | 125 | 5 | 201 | 409 | 182 | 370 | 7.54e-14 | 74.7 |
| Msa1017220 | AT3G19210.2 | 26.977 | 215 | 125 | 5 | 201 | 409 | 182 | 370 | 8.01e-14 | 74.7 |
| Msa1017220 | AT5G44800.1 | 31.667 | 180 | 105 | 8 | 234 | 408 | 710 | 876 | 1.14e-11 | 68.2 |
Find 99 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGTTGGGAACTGGTTTC+TGG | 0.134139 | 7_1:-36197538 | Msa1017220:CDS |
| TATAGTCAACCTTGTCTTTC+CGG | 0.179157 | 7_1:+36198237 | None:intergenic |
| ATGCCGTTAATTTGTATAAT+TGG | 0.195335 | 7_1:-36198051 | Msa1017220:CDS |
| AACGGACGGATTATACTTTC+TGG | 0.224566 | 7_1:-36197694 | Msa1017220:CDS |
| CTGCGAGTTTGTTACTTACT+TGG | 0.256897 | 7_1:-36198156 | Msa1017220:CDS |
| AACCTTGTCTTTCCGGTTCC+AGG | 0.268145 | 7_1:+36198244 | None:intergenic |
| ACAATAACTGGCAAGCATTT+AGG | 0.272862 | 7_1:+36198184 | None:intergenic |
| ATACAGCTTCTAAATCTCTA+AGG | 0.288010 | 7_1:+36199607 | None:intergenic |
| AAGAAGGCTTTGAGTTCATT+TGG | 0.296646 | 7_1:-36198351 | Msa1017220:CDS |
| CACAATTGAATCTTTGTTCA+TGG | 0.305082 | 7_1:+36199794 | None:intergenic |
| CAAGCAGTTGAAGTTGCTTA+TGG | 0.307193 | 7_1:-36197494 | Msa1017220:CDS |
| CTTTCACATCATCAGGAATT+AGG | 0.309588 | 7_1:+36198395 | None:intergenic |
| CTCTCTTTCTATAACCTTCA+TGG | 0.314230 | 7_1:+36198527 | None:intergenic |
| AGGAAGAGAATGATGTGTTA+TGG | 0.335816 | 7_1:-36199647 | Msa1017220:CDS |
| TTCATAGAGAAGGCACTGTT+TGG | 0.338968 | 7_1:-36198420 | Msa1017220:CDS |
| GTATAATCCGTCCGTTTGTT+TGG | 0.347328 | 7_1:+36197701 | None:intergenic |
| GTAAATGCCTCGCTCTTTGA+TGG | 0.352134 | 7_1:-36198487 | Msa1017220:CDS |
| ATCCTTCAAAAGAAACTTCC+CGG | 0.357710 | 7_1:-36197438 | Msa1017220:CDS |
| CTCGCAGGAGCAACAATAAC+TGG | 0.364815 | 7_1:+36198172 | None:intergenic |
| CGACCAATTATACAAATTAA+CGG | 0.371760 | 7_1:+36198048 | None:intergenic |
| GGCATCACCATGCTCTTTAC+CGG | 0.372710 | 7_1:+36198069 | None:intergenic |
| TGATGTGTTATGGGATGAAT+TGG | 0.379245 | 7_1:-36199637 | Msa1017220:CDS |
| AACTCCTTGCTCAATGCTAC+TGG | 0.388208 | 7_1:-36199830 | Msa1017220:CDS |
| CCAGTTGGGAACTGGTTTCT+GGG | 0.388331 | 7_1:-36197537 | Msa1017220:CDS |
| GAGGTTTCTTTCACATCATC+AGG | 0.389906 | 7_1:+36198388 | None:intergenic |
| ATCTCCCATGCTCCTGGAAC+CGG | 0.393951 | 7_1:-36198256 | Msa1017220:CDS |
| GTACAAAGAAAGTAGCATTC+TGG | 0.397195 | 7_1:-36197975 | Msa1017220:CDS |
| TCGAGTGAACGCCACTCCTT+TGG | 0.399518 | 7_1:+36199852 | None:intergenic |
| TGCATTATCTCCCATGCTCC+TGG | 0.408677 | 7_1:-36198262 | Msa1017220:CDS |
| CCCAGAAACCAGTTCCCAAC+TGG | 0.409384 | 7_1:+36197537 | None:intergenic |
| GAGAAATGGTTATATGAGAA+AGG | 0.417233 | 7_1:-36197815 | Msa1017220:CDS |
| TTGAACAATCTTGAGTTATC+CGG | 0.417868 | 7_1:-36198088 | Msa1017220:CDS |
| AGATTGTTCAAATTGTGAAA+TGG | 0.429221 | 7_1:+36198100 | None:intergenic |
| TCCATGAAATTGTTCTGAAA+AGG | 0.432806 | 7_1:+36197667 | None:intergenic |
| TCTCTTTCTATAACCTTCAT+GGG | 0.433057 | 7_1:+36198528 | None:intergenic |
| TACAAAGAAAGTAGCATTCT+GGG | 0.434956 | 7_1:-36197974 | Msa1017220:CDS |
| ACACACCTCATGAAAGGATA+TGG | 0.436841 | 7_1:-36199710 | Msa1017220:CDS |
| GGAAGAGAATGATGTGTTAT+GGG | 0.440679 | 7_1:-36199646 | Msa1017220:CDS |
| AAGGATATGGAGCCTCAAAA+AGG | 0.448788 | 7_1:-36199697 | Msa1017220:CDS |
| TCTTCTTTGGAATATGTTGT+TGG | 0.449183 | 7_1:-36197728 | Msa1017220:CDS |
| TGAGGTGTGTCCACAGAAAC+TGG | 0.457489 | 7_1:+36199723 | None:intergenic |
| TCTTTCCGGTTCCAGGAGCA+TGG | 0.457877 | 7_1:+36198251 | None:intergenic |
| GAACAAAGATTCAATTGTGT+TGG | 0.460430 | 7_1:-36199790 | Msa1017220:CDS |
| TGCGAGTTTGTTACTTACTT+GGG | 0.461401 | 7_1:-36198155 | Msa1017220:CDS |
| GCTAATTTCTTTCATAGAGA+AGG | 0.463466 | 7_1:-36198430 | Msa1017220:CDS |
| AACTGCTTGATCTTATCATC+AGG | 0.469967 | 7_1:+36197508 | None:intergenic |
| TCATAGAGAAGGCACTGTTT+GGG | 0.475525 | 7_1:-36198419 | Msa1017220:CDS |
| GTCGAATTCACGACCTAGTA+AGG | 0.477913 | 7_1:-36198029 | Msa1017220:CDS |
| GTTTGCTTCTGAAAACTGTC+CGG | 0.488894 | 7_1:+36197387 | None:intergenic |
| GCCACCCTCCCTGCGAGGAT+CGG | 0.489802 | 7_1:+36198285 | None:intergenic |
| AAGTTCAATGTTTCCAATGG+TGG | 0.490537 | 7_1:-36198460 | Msa1017220:CDS |
| TTTGATAGATTTCCCCATGA+AGG | 0.492423 | 7_1:-36198541 | Msa1017220:CDS |
| ATTAGCATCTGAACCACCAT+TGG | 0.495221 | 7_1:+36198447 | None:intergenic |
| ACAAGTGCAGAGAAGAGAAA+TGG | 0.495406 | 7_1:-36197829 | Msa1017220:intron |
| CTTTCCGGTTCCAGGAGCAT+GGG | 0.513984 | 7_1:+36198252 | None:intergenic |
| CAGCATACAATTTCTTAACC+CGG | 0.518018 | 7_1:+36197419 | None:intergenic |
| TGAGTAAAACCGATCCTCGC+AGG | 0.519904 | 7_1:-36198294 | Msa1017220:CDS |
| CCTTTGTGAACATGAACAAA+GGG | 0.537964 | 7_1:+36197469 | None:intergenic |
| TTGTATGCTGACTTTGAAGC+CGG | 0.538574 | 7_1:-36197406 | Msa1017220:CDS |
| CAAATATATCTCACCACTAG+TGG | 0.541968 | 7_1:-36199295 | Msa1017220:intron |
| CCCTTTGTTCATGTTCACAA+AGG | 0.545734 | 7_1:-36197469 | Msa1017220:CDS |
| AGGCTCCATATCCTTTCATG+AGG | 0.556599 | 7_1:+36199705 | None:intergenic |
| AGTTCAAAAGACTAAGGAGG+AGG | 0.558646 | 7_1:-36199667 | Msa1017220:CDS |
| ACTCCTTGCTCAATGCTACT+GGG | 0.562921 | 7_1:-36199829 | Msa1017220:CDS |
| TCTAAGTTCAATGTTTCCAA+TGG | 0.563524 | 7_1:-36198463 | Msa1017220:CDS |
| GGATGGTGAAACTGATTTCG+TGG | 0.564249 | 7_1:-36197997 | Msa1017220:CDS |
| ACCGATCCTCGCAGGGAGGG+TGG | 0.565344 | 7_1:-36198286 | Msa1017220:CDS |
| AGATTTAGAAGCTGTATACA+AGG | 0.568633 | 7_1:-36199601 | Msa1017220:intron |
| TCCTTCAAAAGAAACTTCCC+GGG | 0.569388 | 7_1:-36197437 | Msa1017220:CDS |
| CTGTGGACACACCTCATGAA+AGG | 0.578449 | 7_1:-36199716 | Msa1017220:CDS |
| AGCATACAATTTCTTAACCC+GGG | 0.580778 | 7_1:+36197420 | None:intergenic |
| TCAGTGAAGATTGCGTTGAT+CGG | 0.580804 | 7_1:-36199764 | Msa1017220:CDS |
| TTGTGTTCACAACAAGATGA+TGG | 0.584332 | 7_1:+36199381 | None:intergenic |
| TTGTTGGAGATCCAAACAAA+CGG | 0.585739 | 7_1:-36197712 | Msa1017220:CDS |
| TACAGCTTCTAAATCTCTAA+GGG | 0.585998 | 7_1:+36199608 | None:intergenic |
| CAAGTAAGTAACAAACTCGC+AGG | 0.586018 | 7_1:+36198157 | None:intergenic |
| ACCTTTGTGAACATGAACAA+AGG | 0.598373 | 7_1:+36197468 | None:intergenic |
| ACAGCCACCACCAGTTTCTG+TGG | 0.599820 | 7_1:-36199733 | Msa1017220:CDS |
| GAGTAAAACCGATCCTCGCA+GGG | 0.602674 | 7_1:-36198293 | Msa1017220:CDS |
| TTTCCCAGTAGCATTGAGCA+AGG | 0.609617 | 7_1:+36199826 | None:intergenic |
| GAGTTTGTTACTTACTTGGG+AGG | 0.610349 | 7_1:-36198152 | Msa1017220:CDS |
| AAAACCGATCCTCGCAGGGA+GGG | 0.615256 | 7_1:-36198289 | Msa1017220:CDS |
| ATCCGCGTTGTATCCTTACT+AGG | 0.617817 | 7_1:+36198016 | None:intergenic |
| GAGTTATCCGGTAAAGAGCA+TGG | 0.621350 | 7_1:-36198076 | Msa1017220:CDS |
| GAAACCTTGCTTACCACTAG+TGG | 0.622153 | 7_1:+36199282 | None:intergenic |
| TCATCGAAAACTAACAAACC+TGG | 0.631391 | 7_1:+36197778 | None:intergenic |
| AAAAGTTCAAAAGACTAAGG+AGG | 0.636589 | 7_1:-36199670 | Msa1017220:CDS |
| TGGAGATCCAAACAAACGGA+CGG | 0.641653 | 7_1:-36197708 | Msa1017220:CDS |
| CTCTTTCTATAACCTTCATG+GGG | 0.653016 | 7_1:+36198529 | None:intergenic |
| TAGTAAGGATACAACGCGGA+TGG | 0.654590 | 7_1:-36198014 | Msa1017220:CDS |
| CTTAGAGCCATCAAAGAGCG+AGG | 0.670391 | 7_1:+36198480 | None:intergenic |
| CTCCTGGAACCGGAAAGACA+AGG | 0.675210 | 7_1:-36198246 | Msa1017220:CDS |
| GTGTCCACAGAAACTGGTGG+TGG | 0.675704 | 7_1:+36199729 | None:intergenic |
| ACAAAGAAAGTAGCATTCTG+GGG | 0.677863 | 7_1:-36197973 | Msa1017220:CDS |
| ATGCAGCCACCCTCCCTGCG+AGG | 0.685159 | 7_1:+36198280 | None:intergenic |
| TTAGAGACAGATGAAGCTAG+CGG | 0.689954 | 7_1:-36199408 | Msa1017220:CDS |
| TAAAACCGATCCTCGCAGGG+AGG | 0.700738 | 7_1:-36198290 | Msa1017220:CDS |
| GGTGTGTCCACAGAAACTGG+TGG | 0.845721 | 7_1:+36199726 | None:intergenic |
| GACCTAGTAAGGATACAACG+CGG | 0.871333 | 7_1:-36198018 | Msa1017220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTATTTAAAATAACT+TGG | - | chr7_1:36197980-36197999 | Msa1017220:CDS | 10.0% |
| !!! | TTTGATTTTATCATTATTTA+TGG | - | chr7_1:36198253-36198272 | Msa1017220:CDS | 10.0% |
| !!! | TTTTTTCTTTTTCTTATTTT+TGG | + | chr7_1:36199384-36199403 | None:intergenic | 10.0% |
| !!! | AAATTTTAATGTTCTTAAAG+AGG | + | chr7_1:36197668-36197687 | None:intergenic | 15.0% |
| !! | ATATATGTAAGACAAATATA+AGG | - | chr7_1:36198184-36198203 | Msa1017220:CDS | 15.0% |
| !!! | TAATTTAGAATTATTACTGT+GGG | - | chr7_1:36198447-36198466 | Msa1017220:CDS | 15.0% |
| !! | ACAAATTTATGCAAATTATT+TGG | + | chr7_1:36198608-36198627 | None:intergenic | 15.0% |
| !! | TTGTTTATATGTCTAAACTT+TGG | - | chr7_1:36197711-36197730 | Msa1017220:CDS | 20.0% |
| !!! | GTAATTTAGAATTATTACTG+TGG | - | chr7_1:36198446-36198465 | Msa1017220:CDS | 20.0% |
| !! | TTGATTCCATTTATGATTTA+TGG | - | chr7_1:36198635-36198654 | Msa1017220:intron | 20.0% |
| !!! | TTGAGCTCTTTTATTTTTTC+AGG | - | chr7_1:36198536-36198555 | Msa1017220:CDS | 25.0% |
| !!! | ATTTTTTCAGGTTATGTGAA+TGG | - | chr7_1:36198548-36198567 | Msa1017220:intron | 25.0% |
| ! | AAAACAGAAATTGATTGTTG+AGG | - | chr7_1:36198579-36198598 | Msa1017220:intron | 25.0% |
| ! | AAACAGAAATTGATTGTTGA+GGG | - | chr7_1:36198580-36198599 | Msa1017220:intron | 25.0% |
| ! | AGATTGTTCAAATTGTGAAA+TGG | + | chr7_1:36199139-36199158 | None:intergenic | 25.0% |
| !!! | ATGCCGTTAATTTGTATAAT+TGG | - | chr7_1:36199185-36199204 | Msa1017220:intron | 25.0% |
| ! | CGACCAATTATACAAATTAA+CGG | + | chr7_1:36199191-36199210 | None:intergenic | 25.0% |
| !!! | AATATCGTTTTAGGAAATGA+AGG | + | chr7_1:36199623-36199642 | None:intergenic | 25.0% |
| CACAATTGAATCTTTGTTCA+TGG | + | chr7_1:36197445-36197464 | None:intergenic | 30.0% | |
| GAACAAAGATTCAATTGTGT+TGG | - | chr7_1:36197446-36197465 | Msa1017220:CDS | 30.0% | |
| GGAAAAAGTTCAAAAGACTA+AGG | - | chr7_1:36197563-36197582 | Msa1017220:CDS | 30.0% | |
| AAAAGTTCAAAAGACTAAGG+AGG | - | chr7_1:36197566-36197585 | Msa1017220:CDS | 30.0% | |
| TACAGCTTCTAAATCTCTAA+GGG | + | chr7_1:36197631-36197650 | None:intergenic | 30.0% | |
| ATACAGCTTCTAAATCTCTA+AGG | + | chr7_1:36197632-36197651 | None:intergenic | 30.0% | |
| AGATTTAGAAGCTGTATACA+AGG | - | chr7_1:36197635-36197654 | Msa1017220:CDS | 30.0% | |
| ! | ATTTTTCTCGATGAAGAGAT+AGG | - | chr7_1:36197879-36197898 | Msa1017220:intron | 30.0% |
| ! | TTTTTCTCGATGAAGAGATA+GGG | - | chr7_1:36197880-36197899 | Msa1017220:intron | 30.0% |
| AATATAAGGACTAATTGCTG+TGG | - | chr7_1:36198198-36198217 | Msa1017220:CDS | 30.0% | |
| TCTAATACTATTCAGTGTCA+TGG | + | chr7_1:36198509-36198528 | None:intergenic | 30.0% | |
| TCAGTGCCATAAATCATAAA+TGG | + | chr7_1:36198644-36198663 | None:intergenic | 30.0% | |
| TCTCTTTCTATAACCTTCAT+GGG | + | chr7_1:36198711-36198730 | None:intergenic | 30.0% | |
| TCTAAGTTCAATGTTTCCAA+TGG | - | chr7_1:36198773-36198792 | Msa1017220:intron | 30.0% | |
| GCTAATTTCTTTCATAGAGA+AGG | - | chr7_1:36198806-36198825 | Msa1017220:intron | 30.0% | |
| TTCATTTGGAAAAACTTGAC+AGG | - | chr7_1:36198899-36198918 | Msa1017220:intron | 30.0% | |
| TTGAACAATCTTGAGTTATC+CGG | - | chr7_1:36199148-36199167 | Msa1017220:intron | 30.0% | |
| TACAAAGAAAGTAGCATTCT+GGG | - | chr7_1:36199262-36199281 | Msa1017220:intron | 30.0% | |
| AAAAAGAGAAAACAAGCAAG+AGG | - | chr7_1:36199350-36199369 | Msa1017220:CDS | 30.0% | |
| GAGAAATGGTTATATGAGAA+AGG | - | chr7_1:36199421-36199440 | Msa1017220:intron | 30.0% | |
| !!! | AGAAGACTTTTTTCACTTCT+CGG | + | chr7_1:36199494-36199513 | None:intergenic | 30.0% |
| GAAGTGAAAAAAGTCTTCTT+TGG | - | chr7_1:36199495-36199514 | Msa1017220:intron | 30.0% | |
| !! | TCTTCTTTGGAATATGTTGT+TGG | - | chr7_1:36199508-36199527 | Msa1017220:intron | 30.0% |
| ! | ACCTTTTCAGAACAATTTCA+TGG | - | chr7_1:36199568-36199587 | Msa1017220:intron | 30.0% |
| !! | TCCATGAAATTGTTCTGAAA+AGG | + | chr7_1:36199572-36199591 | None:intergenic | 30.0% |
| !! | GAACTTTTTCCACCTTTTTG+AGG | + | chr7_1:36197554-36197573 | None:intergenic | 35.0% |
| AGGAAGAGAATGATGTGTTA+TGG | - | chr7_1:36197589-36197608 | Msa1017220:CDS | 35.0% | |
| GGAAGAGAATGATGTGTTAT+GGG | - | chr7_1:36197590-36197609 | Msa1017220:CDS | 35.0% | |
| TGATGTGTTATGGGATGAAT+TGG | - | chr7_1:36197599-36197618 | Msa1017220:CDS | 35.0% | |
| TTGTGTTCACAACAAGATGA+TGG | + | chr7_1:36197858-36197877 | None:intergenic | 35.0% | |
| ! | TTTTCTCGATGAAGAGATAG+GGG | - | chr7_1:36197881-36197900 | Msa1017220:intron | 35.0% |
| CAAATATATCTCACCACTAG+TGG | - | chr7_1:36197941-36197960 | Msa1017220:intron | 35.0% | |
| !! | TGCAAAGTGTTGTCTAATTG+CGG | - | chr7_1:36198078-36198097 | Msa1017220:CDS | 35.0% |
| ATGCTCTATGAATTGAACCA+TGG | - | chr7_1:36198355-36198374 | Msa1017220:CDS | 35.0% | |
| TTTGATAGATTTCCCCATGA+AGG | - | chr7_1:36198695-36198714 | Msa1017220:intron | 35.0% | |
| CTCTTTCTATAACCTTCATG+GGG | + | chr7_1:36198710-36198729 | None:intergenic | 35.0% | |
| CTCTCTTTCTATAACCTTCA+TGG | + | chr7_1:36198712-36198731 | None:intergenic | 35.0% | |
| AAGTTCAATGTTTCCAATGG+TGG | - | chr7_1:36198776-36198795 | Msa1017220:intron | 35.0% | |
| CTTTCACATCATCAGGAATT+AGG | + | chr7_1:36198844-36198863 | None:intergenic | 35.0% | |
| ! | TTCTTTTTGATGAGGATACG+AGG | + | chr7_1:36198870-36198889 | None:intergenic | 35.0% |
| TCGTATCCTCATCAAAAAGA+AGG | - | chr7_1:36198869-36198888 | Msa1017220:intron | 35.0% | |
| ! | TCAAAGCCTTCTTTTTGATG+AGG | + | chr7_1:36198878-36198897 | None:intergenic | 35.0% |
| !! | AAGAAGGCTTTGAGTTCATT+TGG | - | chr7_1:36198885-36198904 | Msa1017220:intron | 35.0% |
| TATAGTCAACCTTGTCTTTC+CGG | + | chr7_1:36199002-36199021 | None:intergenic | 35.0% | |
| ACAATAACTGGCAAGCATTT+AGG | + | chr7_1:36199055-36199074 | None:intergenic | 35.0% | |
| !! | TGCGAGTTTGTTACTTACTT+GGG | - | chr7_1:36199081-36199100 | Msa1017220:intron | 35.0% |
| GTACAAAGAAAGTAGCATTC+TGG | - | chr7_1:36199261-36199280 | Msa1017220:intron | 35.0% | |
| ACAAAGAAAGTAGCATTCTG+GGG | - | chr7_1:36199263-36199282 | Msa1017220:intron | 35.0% | |
| TCATCGAAAACTAACAAACC+TGG | + | chr7_1:36199461-36199480 | None:intergenic | 35.0% | |
| !!! | GGTTTGTTAGTTTTCGATGA+AGG | - | chr7_1:36199461-36199480 | Msa1017220:intron | 35.0% |
| TTGTTGGAGATCCAAACAAA+CGG | - | chr7_1:36199524-36199543 | Msa1017220:intron | 35.0% | |
| !!! | TCCGATGATTTTTTACGTTC+CGG | + | chr7_1:36199674-36199693 | None:intergenic | 35.0% |
| AATCATCGGAAAAATCCAGT+TGG | - | chr7_1:36199684-36199703 | Msa1017220:CDS | 35.0% | |
| ATCATCGGAAAAATCCAGTT+GGG | - | chr7_1:36199685-36199704 | Msa1017220:CDS | 35.0% | |
| AACTGCTTGATCTTATCATC+AGG | + | chr7_1:36199731-36199750 | None:intergenic | 35.0% | |
| CCTTTGTGAACATGAACAAA+GGG | + | chr7_1:36199770-36199789 | None:intergenic | 35.0% | |
| ACCTTTGTGAACATGAACAA+AGG | + | chr7_1:36199771-36199790 | None:intergenic | 35.0% | |
| ATCCTTCAAAAGAAACTTCC+CGG | - | chr7_1:36199798-36199817 | Msa1017220:CDS | 35.0% | |
| AGCATACAATTTCTTAACCC+GGG | + | chr7_1:36199819-36199838 | None:intergenic | 35.0% | |
| CAGCATACAATTTCTTAACC+CGG | + | chr7_1:36199820-36199839 | None:intergenic | 35.0% | |
| ! | TCAGTGAAGATTGCGTTGAT+CGG | - | chr7_1:36197472-36197491 | Msa1017220:CDS | 40.0% |
| ACACACCTCATGAAAGGATA+TGG | - | chr7_1:36197526-36197545 | Msa1017220:CDS | 40.0% | |
| AAGGATATGGAGCCTCAAAA+AGG | - | chr7_1:36197539-36197558 | Msa1017220:CDS | 40.0% | |
| AGTTCAAAAGACTAAGGAGG+AGG | - | chr7_1:36197569-36197588 | Msa1017220:CDS | 40.0% | |
| ! | GTGTGTTACTATCTGCAGAT+TGG | - | chr7_1:36197801-36197820 | Msa1017220:CDS | 40.0% |
| TTAGAGACAGATGAAGCTAG+CGG | - | chr7_1:36197828-36197847 | Msa1017220:intron | 40.0% | |
| ! | GGGGAATTTTGCAAATCATG+TGG | - | chr7_1:36197900-36197919 | Msa1017220:intron | 40.0% |
| ! | ATTTTGCAAATCATGTGGCG+TGG | - | chr7_1:36197905-36197924 | Msa1017220:intron | 40.0% |
| GGATCGCAAAAAATAGAGGT+AGG | + | chr7_1:36198125-36198144 | None:intergenic | 40.0% | |
| GTGAATCAGTTTGTGAATCG+CGG | + | chr7_1:36198146-36198165 | None:intergenic | 40.0% | |
| TCATTTAGTCCTCATGCAGT+AGG | - | chr7_1:36198286-36198305 | Msa1017220:CDS | 40.0% | |
| CATTTAGTCCTCATGCAGTA+GGG | - | chr7_1:36198287-36198306 | Msa1017220:CDS | 40.0% | |
| ATTTAGTCCTCATGCAGTAG+GGG | - | chr7_1:36198288-36198307 | Msa1017220:CDS | 40.0% | |
| ACTACTACTATTGAGCACCA+TGG | + | chr7_1:36198375-36198394 | None:intergenic | 40.0% | |
| ATTAGCATCTGAACCACCAT+TGG | + | chr7_1:36198792-36198811 | None:intergenic | 40.0% | |
| !! | TTCATAGAGAAGGCACTGTT+TGG | - | chr7_1:36198816-36198835 | Msa1017220:intron | 40.0% |
| !! | TCATAGAGAAGGCACTGTTT+GGG | - | chr7_1:36198817-36198836 | Msa1017220:intron | 40.0% |
| GAGGTTTCTTTCACATCATC+AGG | + | chr7_1:36198851-36198870 | None:intergenic | 40.0% | |
| CAAGTAAGTAACAAACTCGC+AGG | + | chr7_1:36199082-36199101 | None:intergenic | 40.0% | |
| !! | CTGCGAGTTTGTTACTTACT+TGG | - | chr7_1:36199080-36199099 | Msa1017220:intron | 40.0% |
| !! | GAGTTTGTTACTTACTTGGG+AGG | - | chr7_1:36199084-36199103 | Msa1017220:intron | 40.0% |
| GGAGGACGAGTTCAAAAAAT+GGG | - | chr7_1:36199102-36199121 | Msa1017220:intron | 40.0% | |
| GAGTTCAAAAAATGGGACGT+TGG | - | chr7_1:36199109-36199128 | Msa1017220:intron | 40.0% | |
| AAGAGAAAACAAGCAAGAGG+AGG | - | chr7_1:36199353-36199372 | Msa1017220:CDS | 40.0% | |
| AGAGAAAACAAGCAAGAGGA+GGG | - | chr7_1:36199354-36199373 | Msa1017220:CDS | 40.0% | |
| ACAAGTGCAGAGAAGAGAAA+TGG | - | chr7_1:36199407-36199426 | Msa1017220:CDS | 40.0% | |
| !! | AAGGTTTTACTTGAAGCACC+AGG | - | chr7_1:36199440-36199459 | Msa1017220:intron | 40.0% |
| GTATAATCCGTCCGTTTGTT+TGG | + | chr7_1:36199538-36199557 | None:intergenic | 40.0% | |
| !! | AACGGACGGATTATACTTTC+TGG | - | chr7_1:36199542-36199561 | Msa1017220:intron | 40.0% |
| ! | AGCTCGAGCAATATCGTTTT+AGG | + | chr7_1:36199632-36199651 | None:intergenic | 40.0% |
| ! | GAAAAACTTTTGCCACAAGC+CGG | - | chr7_1:36199652-36199671 | Msa1017220:CDS | 40.0% |
| !!! | ATTTTTTACGTTCCGGCTTG+TGG | + | chr7_1:36199667-36199686 | None:intergenic | 40.0% |
| GCCGGAACGTAAAAAATCAT+CGG | - | chr7_1:36199670-36199689 | Msa1017220:CDS | 40.0% | |
| CAAGCAGTTGAAGTTGCTTA+TGG | - | chr7_1:36199742-36199761 | Msa1017220:CDS | 40.0% | |
| CCCTTTGTTCATGTTCACAA+AGG | - | chr7_1:36199767-36199786 | Msa1017220:CDS | 40.0% | |
| TCCTTCAAAAGAAACTTCCC+GGG | - | chr7_1:36199799-36199818 | Msa1017220:CDS | 40.0% | |
| !! | TTGTATGCTGACTTTGAAGC+CGG | - | chr7_1:36199830-36199849 | Msa1017220:CDS | 40.0% |
| ! | GTTTGCTTCTGAAAACTGTC+CGG | + | chr7_1:36199852-36199871 | None:intergenic | 40.0% |
| AACTCCTTGCTCAATGCTAC+TGG | - | chr7_1:36197406-36197425 | Msa1017220:CDS | 45.0% | |
| ACTCCTTGCTCAATGCTACT+GGG | - | chr7_1:36197407-36197426 | Msa1017220:CDS | 45.0% | |
| ! | TTTCCCAGTAGCATTGAGCA+AGG | + | chr7_1:36197413-36197432 | None:intergenic | 45.0% |
| AGGCTCCATATCCTTTCATG+AGG | + | chr7_1:36197534-36197553 | None:intergenic | 45.0% | |
| GATATGGAGCCTCAAAAAGG+TGG | - | chr7_1:36197542-36197561 | Msa1017220:CDS | 45.0% | |
| GAAACCTTGCTTACCACTAG+TGG | + | chr7_1:36197957-36197976 | None:intergenic | 45.0% | |
| GCGTATTGTGGAACAAACAG+TGG | + | chr7_1:36198048-36198067 | None:intergenic | 45.0% | |
| !! | CATTGACTTGCTGCGTATTG+TGG | + | chr7_1:36198060-36198079 | None:intergenic | 45.0% |
| TCGCGGATCGCAAAAAATAG+AGG | + | chr7_1:36198129-36198148 | None:intergenic | 45.0% | |
| ! | TTCTTTTCCCCTACTGCATG+AGG | + | chr7_1:36198298-36198317 | None:intergenic | 45.0% |
| GCAGTAGGGGAAAAGAAACT+TGG | - | chr7_1:36198301-36198320 | Msa1017220:CDS | 45.0% | |
| GTAAATGCCTCGCTCTTTGA+TGG | - | chr7_1:36198749-36198768 | Msa1017220:intron | 45.0% | |
| GGGAGGACGAGTTCAAAAAA+TGG | - | chr7_1:36199101-36199120 | Msa1017220:intron | 45.0% | |
| GAGTTATCCGGTAAAGAGCA+TGG | - | chr7_1:36199160-36199179 | Msa1017220:intron | 45.0% | |
| GTCGAATTCACGACCTAGTA+AGG | - | chr7_1:36199207-36199226 | Msa1017220:intron | 45.0% | |
| GACCTAGTAAGGATACAACG+CGG | - | chr7_1:36199218-36199237 | Msa1017220:intron | 45.0% | |
| ATCCGCGTTGTATCCTTACT+AGG | + | chr7_1:36199223-36199242 | None:intergenic | 45.0% | |
| TAGTAAGGATACAACGCGGA+TGG | - | chr7_1:36199222-36199241 | Msa1017220:intron | 45.0% | |
| ! | GGATGGTGAAACTGATTTCG+TGG | - | chr7_1:36199239-36199258 | Msa1017220:intron | 45.0% |
| AGTTTGTACGAGAAGCTAGC+TGG | - | chr7_1:36199295-36199314 | Msa1017220:intron | 45.0% | |
| TGGAGATCCAAACAAACGGA+CGG | - | chr7_1:36199528-36199547 | Msa1017220:intron | 45.0% | |
| GGAAAAATCCAGTTGGGAAC+TGG | - | chr7_1:36199691-36199710 | Msa1017220:CDS | 45.0% | |
| ! | ACCCGGGAAGTTTCTTTTGA+AGG | + | chr7_1:36199803-36199822 | None:intergenic | 45.0% |
| TGAGGTGTGTCCACAGAAAC+TGG | + | chr7_1:36197516-36197535 | None:intergenic | 50.0% | |
| CTGTGGACACACCTCATGAA+AGG | - | chr7_1:36197520-36197539 | Msa1017220:CDS | 50.0% | |
| CTCACCACTAGTGGTAAGCA+AGG | - | chr7_1:36197950-36197969 | Msa1017220:intron | 50.0% | |
| CTTAGAGCCATCAAAGAGCG+AGG | + | chr7_1:36198759-36198778 | None:intergenic | 50.0% | |
| TGAGTAAAACCGATCCTCGC+AGG | - | chr7_1:36198942-36198961 | Msa1017220:intron | 50.0% | |
| GAGTAAAACCGATCCTCGCA+GGG | - | chr7_1:36198943-36198962 | Msa1017220:intron | 50.0% | |
| TGCATTATCTCCCATGCTCC+TGG | - | chr7_1:36198974-36198993 | Msa1017220:intron | 50.0% | |
| AACCTTGTCTTTCCGGTTCC+AGG | + | chr7_1:36198995-36199014 | None:intergenic | 50.0% | |
| CTCGCAGGAGCAACAATAAC+TGG | + | chr7_1:36199067-36199086 | None:intergenic | 50.0% | |
| GGCATCACCATGCTCTTTAC+CGG | + | chr7_1:36199170-36199189 | None:intergenic | 50.0% | |
| TTGTACGAGAAGCTAGCTGG+AGG | - | chr7_1:36199298-36199317 | Msa1017220:CDS | 50.0% | |
| ! | TCCAGTTGGGAACTGGTTTC+TGG | - | chr7_1:36199698-36199717 | Msa1017220:CDS | 50.0% |
| ! | CCAGTTGGGAACTGGTTTCT+GGG | - | chr7_1:36199699-36199718 | Msa1017220:CDS | 50.0% |
| TCGAGTGAACGCCACTCCTT+TGG | + | chr7_1:36197387-36197406 | None:intergenic | 55.0% | |
| ACAGCCACCACCAGTTTCTG+TGG | - | chr7_1:36197503-36197522 | Msa1017220:CDS | 55.0% | |
| GTGTCCACAGAAACTGGTGG+TGG | + | chr7_1:36197510-36197529 | None:intergenic | 55.0% | |
| GGTGTGTCCACAGAAACTGG+TGG | + | chr7_1:36197513-36197532 | None:intergenic | 55.0% | |
| TAAAACCGATCCTCGCAGGG+AGG | - | chr7_1:36198946-36198965 | Msa1017220:intron | 55.0% | |
| AAAACCGATCCTCGCAGGGA+GGG | - | chr7_1:36198947-36198966 | Msa1017220:intron | 55.0% | |
| ATCTCCCATGCTCCTGGAAC+CGG | - | chr7_1:36198980-36198999 | Msa1017220:intron | 55.0% | |
| ! | CTTTCCGGTTCCAGGAGCAT+GGG | + | chr7_1:36198987-36199006 | None:intergenic | 55.0% |
| TCTTTCCGGTTCCAGGAGCA+TGG | + | chr7_1:36198988-36199007 | None:intergenic | 55.0% | |
| CTCCTGGAACCGGAAAGACA+AGG | - | chr7_1:36198990-36199009 | Msa1017220:intron | 55.0% | |
| TACGAGAAGCTAGCTGGAGG+AGG | - | chr7_1:36199301-36199320 | Msa1017220:CDS | 55.0% | |
| ACGAGAAGCTAGCTGGAGGA+GGG | - | chr7_1:36199302-36199321 | Msa1017220:CDS | 55.0% | |
| CCCAGAAACCAGTTCCCAAC+TGG | + | chr7_1:36199702-36199721 | None:intergenic | 55.0% | |
| CGAGAAGCTAGCTGGAGGAG+GGG | - | chr7_1:36199303-36199322 | Msa1017220:CDS | 60.0% | |
| GAGAAGCTAGCTGGAGGAGG+GGG | - | chr7_1:36199304-36199323 | Msa1017220:CDS | 60.0% | |
| AGAAGCTAGCTGGAGGAGGG+GGG | - | chr7_1:36199305-36199324 | Msa1017220:CDS | 60.0% | |
| GAAGCTAGCTGGAGGAGGGG+GGG | - | chr7_1:36199306-36199325 | Msa1017220:CDS | 65.0% | |
| AAGCTAGCTGGAGGAGGGGG+GGG | - | chr7_1:36199307-36199326 | Msa1017220:CDS | 65.0% | |
| ACCGATCCTCGCAGGGAGGG+TGG | - | chr7_1:36198950-36198969 | Msa1017220:intron | 70.0% | |
| GCCACCCTCCCTGCGAGGAT+CGG | + | chr7_1:36198954-36198973 | None:intergenic | 70.0% | |
| ATGCAGCCACCCTCCCTGCG+AGG | + | chr7_1:36198959-36198978 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 36197381 | 36199877 | 36197381 | ID=Msa1017220;Name=Msa1017220 |
| chr7_1 | mRNA | 36197381 | 36199877 | 36197381 | ID=Msa1017220-mRNA-1;Parent=Msa1017220;Name=Msa1017220-mRNA-1;_AED=0.34;_eAED=0.38;_QI=0|0|0|1|1|1|4|0|493 |
| chr7_1 | exon | 36199602 | 36199877 | 36199602 | ID=Msa1017220-mRNA-1:exon:6809;Parent=Msa1017220-mRNA-1 |
| chr7_1 | exon | 36199296 | 36199439 | 36199296 | ID=Msa1017220-mRNA-1:exon:6808;Parent=Msa1017220-mRNA-1 |
| chr7_1 | exon | 36197963 | 36198563 | 36197963 | ID=Msa1017220-mRNA-1:exon:6807;Parent=Msa1017220-mRNA-1 |
| chr7_1 | exon | 36197381 | 36197841 | 36197381 | ID=Msa1017220-mRNA-1:exon:6806;Parent=Msa1017220-mRNA-1 |
| chr7_1 | CDS | 36199602 | 36199877 | 36199602 | ID=Msa1017220-mRNA-1:cds;Parent=Msa1017220-mRNA-1 |
| chr7_1 | CDS | 36199296 | 36199439 | 36199296 | ID=Msa1017220-mRNA-1:cds;Parent=Msa1017220-mRNA-1 |
| chr7_1 | CDS | 36197963 | 36198563 | 36197963 | ID=Msa1017220-mRNA-1:cds;Parent=Msa1017220-mRNA-1 |
| chr7_1 | CDS | 36197381 | 36197841 | 36197381 | ID=Msa1017220-mRNA-1:cds;Parent=Msa1017220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
