AlfalfaGEDB | Msa1017300

M. sativa cultivar zhongmu-4 / Msa1017300

KEGG: K10875
GO: -
PFAM: PF00176.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017300	KEH22459.1	80.285	421	69	9	1	414	1	414	3.26e-158	521
Msa1017300	KEH22459.1	91.401	942	70	2	454	1385	299	1239	0.0	1737

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017300	sp\|F4I8S3\|CLSY3_ARATH	47.656	768	350	14	641	1380	658	1401	0.0	669

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017300	A0A072TY92	80.285	421	69	9	1	414	1	414	1.56e-158	521
Msa1017300	A0A072TY92	91.401	942	70	2	454	1385	299	1239	0.0	1737

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1017300	TR	SNF2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017300	MtrunA17_Chr7g0233021	91.401	942	70	2	454	1385	299	1239	0.0	1737
Msa1017300	MtrunA17_Chr7g0233021	80.285	421	69	9	1	414	1	414	3.00e-162	521
Msa1017300	MtrunA17_Chr7g0233031	59.236	1440	330	27	11	1383	1	1250	0.0	1395
Msa1017300	MtrunA17_Chr4g0047081	72.582	941	219	11	454	1379	322	1238	0.0	1297
Msa1017300	MtrunA17_Chr4g0047081	64.955	448	90	8	11	414	1	425	1.41e-124	418
Msa1017300	MtrunA17_Chr7g0232971	66.667	960	261	18	470	1384	357	1302	0.0	1189
Msa1017300	MtrunA17_Chr7g0232971	36.893	515	188	17	1	414	1	479	8.98e-38	155
Msa1017300	MtrunA17_Chr7g0225791	66.036	951	265	17	468	1379	357	1288	0.0	1154
Msa1017300	MtrunA17_Chr7g0225791	37.383	214	82	10	47	246	3	178	4.30e-15	81.3
Msa1017300	MtrunA17_Chr7g0232991	73.100	658	153	10	746	1385	16	667	0.0	907

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017300	AT1G05490.1	47.656	768	350	14	641	1380	658	1401	0.0	669
Msa1017300	AT3G24340.1	46.640	744	337	12	651	1382	434	1129	0.0	639
Msa1017300	AT3G42670.2	34.938	727	414	21	676	1367	541	1243	2.85e-109	375
Msa1017300	AT3G42670.3	34.938	727	414	21	676	1367	541	1243	2.85e-109	375
Msa1017300	AT3G42670.1	34.938	727	414	21	676	1367	541	1243	2.85e-109	375
Msa1017300	AT3G42670.4	34.890	728	415	21	676	1367	541	1245	3.53e-108	372
Msa1017300	AT5G20420.1	33.887	723	427	16	676	1367	547	1249	4.56e-103	358
Msa1017300	AT2G16390.2	29.771	655	348	20	713	1332	273	850	4.10e-77	275
Msa1017300	AT2G16390.1	29.771	655	348	20	713	1332	270	847	7.06e-77	275
Msa1017300	AT2G21450.3	29.624	692	381	24	678	1332	60	682	1.78e-74	264

Showing 1 to 10 of 73 entries

Previous1 2 3 4 5…8Next

Find 282 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAAGAAGAGATGA+AGG	0.421135	7_1:-36376405	Msa1017300:CDS
AAAAGTATCATGTTCACAGC+GGG	0.557970	7_1:+36375777	None:intergenic
AAAAGTTCAAAAGACCAAGG+AGG	0.714230	7_1:-36376066	Msa1017300:CDS
AAACAATGGAGAACAAAAGA+AGG	0.476489	7_1:-36376367	Msa1017300:CDS
AAAGAAAACGAAGATTATGT+TGG	0.561376	7_1:-36377752	Msa1017300:CDS
AAAGAACACCGATCCTCGAA+GGG	0.616260	7_1:-36375107	Msa1017300:CDS
AAAGACCAAGGAGGAAGAGG+AGG	0.614242	7_1:-36376057	Msa1017300:CDS
AAAGAGAAAACGTGCAAGTG+CGG	0.595871	7_1:-36374702	Msa1017300:CDS
AAAGAGTGATGAAGAAGATA+AGG	0.443898	7_1:-36378098	Msa1017300:CDS
AAAGATCAATTTGTTAAAGG+AGG	0.527680	7_1:-36376458	Msa1017300:CDS

Showing 1 to 10 of 282 entries

Previous1 2 3 4 5…29Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGTAAGAATGTTCCGTTATT+TGG	-	chr7_1:36373461-36373480	Msa1017300:CDS	30.0%
AGTAAAAGAGAACCAAACAA+CGG	+	chr7_1:36373518-36373537	None:intergenic	30.0%
AAAGAGTGATGAAGAAGATA+AGG	-	chr7_1:36373559-36373578	Msa1017300:CDS	30.0%
AAGAGTGATGAAGAAGATAA+GGG	-	chr7_1:36373560-36373579	Msa1017300:CDS	30.0%
TTCATATTCATCATCATCGA+TGG	+	chr7_1:36373666-36373685	None:intergenic	30.0%
GATGATGAATATGAAGATGT+TGG	-	chr7_1:36373671-36373690	Msa1017300:CDS	30.0%
AGTAAAAAGTGATGAAAGTG+AGG	-	chr7_1:36373937-36373956	Msa1017300:CDS	30.0%
GTAAAAAGTGATGAAAGTGA+GGG	-	chr7_1:36373938-36373957	Msa1017300:CDS	30.0%
ATCATCATCATCAACATAAG+AGG	+	chr7_1:36374146-36374165	None:intergenic	30.0%
AAGGTGAAGAGTAAAAAAAG+TGG	-	chr7_1:36374241-36374260	Msa1017300:CDS	30.0%

Showing 1 to 10 of 356 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	36373446	36378233	36373446	ID=Msa1017300;Name=Msa1017300
chr7_1	mRNA	36373446	36378233	36373446	ID=Msa1017300-mRNA-1;Parent=Msa1017300;Name=Msa1017300-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|4\|0\|1385
chr7_1	exon	36376932	36378233	36376932	ID=Msa1017300-mRNA-1:exon:6819;Parent=Msa1017300-mRNA-1
chr7_1	exon	36375998	36376792	36375998	ID=Msa1017300-mRNA-1:exon:6818;Parent=Msa1017300-mRNA-1
chr7_1	exon	36375699	36375833	36375699	ID=Msa1017300-mRNA-1:exon:6817;Parent=Msa1017300-mRNA-1
chr7_1	exon	36373446	36375371	36373446	ID=Msa1017300-mRNA-1:exon:6816;Parent=Msa1017300-mRNA-1
chr7_1	CDS	36376932	36378233	36376932	ID=Msa1017300-mRNA-1:cds;Parent=Msa1017300-mRNA-1
chr7_1	CDS	36375998	36376792	36375998	ID=Msa1017300-mRNA-1:cds;Parent=Msa1017300-mRNA-1
chr7_1	CDS	36375699	36375833	36375699	ID=Msa1017300-mRNA-1:cds;Parent=Msa1017300-mRNA-1
chr7_1	CDS	36373446	36375371	36373446	ID=Msa1017300-mRNA-1:cds;Parent=Msa1017300-mRNA-1

Gene Sequence

>Msa1017300

ATGGCTGGTTTTTCTAGTAAGAATGTTCCGTTATTTGGTGTTTCTAGCAGAACTCGTAGCAAGAATGTTCCGTTGTTTGGTTCTCTTTTACTTGGTGGTTCATCAAAGCGGAGAAAGAGTGATGAAGAAGATAAGGGCCTGGAATATGTTTCTGGTTCTAAAAGAAGAAAGATGAACGAAGAGCCTTTTGTTGTTCCTGCAGATGCTGAGGTAGTTTCCATCGATGATGATGAATATGAAGATGTTGGTCAAGAAGGGTTGGAGCATAGTGATGAGAAGATGTCTGAGGGTGGTGTTGCAAGTGGAGGAAGTGGTGATTTTGATGCTGAAATTGCAAAGTTTGTTGATGAAAAGTGTGATAGGGCACAAGATAACCCGATTCCGATAAGTTCAGATGAGTATGGTGAAAGTGATGAAGAACTCTCTGTTGATTCTGATGCTAATAATGAAGAAGAAGAAAAAGAAAACGAAGATTATGTTGGCAAAGAGGGAGTAAAAAGTGATGAAAGTGAGGGAACTGGTAGGTTTTCTGATAAAGGTGAAAAGGTTATAATTGATTTGGATGATTCTGAAGAGAGTGAGGAGGATGAGGAGGATTCTGACGAGAGTGAAGCAAATGATTCTAGTGATGAGGATTTTGTAGTTGATGAGCCAAATGAGATTTCAGACAATGATGACAATGACTGTTCTTCTAGCTCCTCTTATGTTGATGATGATGATGATGATGCTGAGGAGGAGGAGAAGAAGAAAGAGGGTTATAGGAAAGATTTCAATGTGGTGGAAGAATTAGTAAGAAAGGTGAAGAGTAAAAAAAGTGGAATTTCTGAGAGCAATAATGGGGAGGTAAATGTTGAGAATAGTTCATCTTATGGTAATGATGATGAGGAGATGGTGAGAAAGGGGAGGGATAAGAAAAGTGGAATTTCTGAGAGGAAATGTGAGGAGGTAGAGAATGAGAATAGACCATCTTCCACAAATACTGATAAGTTGGATCATGCAGATCATGCTAGTGTTTCCTCTAGTACCTATGTGAAAAAGGGTTCTTCTTCTAAACTGAATGGAGTATCAGAGACATTGAAAGCAAAGAGTGTTGATGTGAAAGTGAAAAACGTCTCCGATGAAAGTGTGAATGTTGGAGCGAATGCCAAATCAAAAGATAATGTTGGTGATTCTGATCAAGGAAAAGATCAATATGTTGGTTTAGATGTTGGCGGAGTTTCTTCGGTTCAAACAAAGCAAGAGAATGAAGTGCTATGGGATGAATTGGATGAAGCCCTTAGAGAATCAGAAGCGGTATCTAAGAATGAAATGTCAGAGGGGAAAATAGCAAAAAGTGTAAATGTTGCCAAAGCCAAATTCAAATCCAAAGTCAAACCTAAGAAATATGAGGAGGTAGAGAAGGAGTTGGAGCATGCAGACCATGCTAGTGTTTCCTCCTGTACCATTGAGAAGAAGGGTAGTTCTTCTTCTAAACCGAATGGAGTATCAGAGACACTGAAACCAAAGAGTGTAGAAGGGAAAGTGAAAAATCTCTTTGATGAAAGTGTGAATATAAGAGTAAATGCCAAATCAAAAAACAAATCCAAAGAAAATGTTGGTGATTCTGATCGCGGAAAAGATCAATTTGTTAAAGGAGGCTTAAATGTTGGAGGAGTTTCTTCAGTTCAAAAAGAGAAAGAAGAGATGAAGGAATCAGATAAACAGAAAACAATGGAGAACAAAAGAAGGGATTATAAAGGTAGAGCTAACATCTGTAATGGTGAGAAGAAGGAATCTATTGATAACAATGGATTAAATCAGGGCGTCAAAAGCACACATTTTATGCGGAAGGAGTTGCGTTCACTCGAACTCCTTGTTAAATGCTATTGGGAAAGAAAGAATACCATGAACAATGATTCAATTGTGTTGGAGGTCAACGACGATGGTGTTGGTCAGCAAGATACACGGCCACCACCAGTCTCTGTGGAGACACCTTGTGAACGGATATGGAGCCTTAAAAAGGTAGAAAAAGTTCAAAAGACCAAGGAGGAAGAGGAGGAGGAATTGTTATGGGATGAATTTGATACAGTCCGTAGAGAATCTGACGCTGAATCCATGATTGGAAATTTAGGAGAAAACGGAGGTTCATCATCCCGCTGTGAACATGATACTTTTCTCGACGAAGAGATTGGTCTATTTTGCAAATTGTGTCATGAGGTTGTTACTGAGATCAAATATATCTCACCACCTGTGGATGATAGATGTCCCAATGAAGGTTCAGGAAAGAGGGCTTCATTTGATGATTCAGTAAATGCCTCACTCTTTGATGGCTCTCAGTTCAATGTTTCCGATGGTGATTCAGATGCTAATTTGTTTCTTGAAGGAACAGTTTGGGACCTAATTCCGGATGTGAAAGAAAAATTATATCCTCATCAACAAGAAGGATTTGAATTCATTTGGAAAAACTTAGCAGGAAACATTGAGCTTCAAAAGTTAAAGAACACCGATCCTCGAAGGGAAGGTGGCTGCATTATTTCACATGCTCCTGGAACTGGTAAGACAAGGTTGACAATAGAGTTTCTCAAGGCATATTTGAAAGTTTTTCCGAGATGCTTGCCGATTATTGTTGCACCTGCAAGTTTGTTGCTTACTTGGGAATATGAGTTCAAAAAGTGGGACATAGGCGTTCCATTTCACAATTTGAACAACTCTGAGTTATCTGTTAAAGAGCATGACGATGTTGTTAATGCAAATAATTGGTCTAATACACGGCAAAGTACAGAGGAGACACGGATGATGAAACTGATTTCGTGGTTTAAAGCCAAGAGCATTCTGGGAATCAGTTACAGTTTGTACGAGAAGATAGCTGGAGGAGGGGAATCTGAAGACGGAGATGAGAAAAAGAGAAAACGTGCAAGTGCGGACAAGAGAAAAGAAAACAGTTGTATGAGAAAGGTTTTACTTGAAACTCCTGGTTTGTTGGTTCTAGATGAAGGACATACCCCTAGAAATAAAAATAGTCTTATTTGGAAGGTGTTGTCGAAAATTCAAACGCGGAAGCGAATCATCCTTTCTGGAACTCCTTTCCAGAACAATTTCTTGGAACTATACAACACTTTGAGCTTGGTGAGGCCTTCTTTTCATAAAACGATACCGCACGAGCTGAAAAAGTTTTGCCAAAAGCAGGAACATAAAAAAGCACCTAAAGAATGGAGTTGGGAACCGGTTTTGGGCAACACAACAGGTAATACTTCTGACGATAAGATCAAGCAGTTGAAATCGCTTATGGATCCCTTTGTTCATGTTCACAAAGGCGCGATCCTACAAAAGAAGCTTCTTGGGTTAAGAGATTGTGTGCTGTGTTTGAAGCCGGACAGTTTTCATAAGCAAATTCTCGAGAGTTTTAAAAGTTCTCAGAACTCATTCATCTTTGAGAATAAGCAGACCCTGGCGTCGATCCATCCGTCTCTTCTCCTCGAGTGCAAACTTTTAGAAGAAGAAGAATCTTTTGTTGATAAGGACCGTCTAGAAAAGCTTAGATTGGACCACAATGCAGGTGTCAAAACAAAGTTTTTGGTGGAGTTTGTTAGTCTTTGTGCTGCTCACAATGAGAAAGTTCTCGTGTTCAGCCAATTCCTCGATCCTTTACGCTTAATTATAGACCAATTAAACTCTGCTCTTAAATGGACCGAGGGGAAGGAAATTCTCTACATGTCTGGAGAGGTTAGGGACAGGCAATCCTTAATCCATAACTTCAATGATGAAAACAGCCGATCGAAGATTCTCCTTGCATCAACTAGAGCTTGTTCCGAAGGAATCAGCTTAGTTGGAGCTTCTAGGGTTGTGCTACTCGATGTCGAATGGAATCCTTCGGTTGAAAAACAGGCAATCAGCAGAGCTTATCGAATTGGACAGAAGAAGGTTGTTTACACATATCATCTGCTCACTCAAGGGACTAACGAGTGTGATAAATATTGCAAACAGGCGGAAAAGCACCGGTTGTCTGAACTAGTTTTTTCGGCTAAAAATGCCGATAATCATAATGAGCCGAAGAACTGTGCGGCAGACATTGAAGATAGAATTCTTGATCTAATGATTCGGCACGAAAATCTCAAAGACATGTTTGTTGAGTGTGTGGTACAGCCGAAGGAGCGAGAATTTGAGAGTTTTGGCTATTGA

Protein sequence

>Msa1017300

MAGFSSKNVPLFGVSSRTRSKNVPLFGSLLLGGSSKRRKSDEEDKGLEYVSGSKRRKMNEEPFVVPADAEVVSIDDDEYEDVGQEGLEHSDEKMSEGGVASGGSGDFDAEIAKFVDEKCDRAQDNPIPISSDEYGESDEELSVDSDANNEEEEKENEDYVGKEGVKSDESEGTGRFSDKGEKVIIDLDDSEESEEDEEDSDESEANDSSDEDFVVDEPNEISDNDDNDCSSSSSYVDDDDDDAEEEEKKKEGYRKDFNVVEELVRKVKSKKSGISESNNGEVNVENSSSYGNDDEEMVRKGRDKKSGISERKCEEVENENRPSSTNTDKLDHADHASVSSSTYVKKGSSSKLNGVSETLKAKSVDVKVKNVSDESVNVGANAKSKDNVGDSDQGKDQYVGLDVGGVSSVQTKQENEVLWDELDEALRESEAVSKNEMSEGKIAKSVNVAKAKFKSKVKPKKYEEVEKELEHADHASVSSCTIEKKGSSSSKPNGVSETLKPKSVEGKVKNLFDESVNIRVNAKSKNKSKENVGDSDRGKDQFVKGGLNVGGVSSVQKEKEEMKESDKQKTMENKRRDYKGRANICNGEKKESIDNNGLNQGVKSTHFMRKELRSLELLVKCYWERKNTMNNDSIVLEVNDDGVGQQDTRPPPVSVETPCERIWSLKKVEKVQKTKEEEEEELLWDEFDTVRRESDAESMIGNLGENGGSSSRCEHDTFLDEEIGLFCKLCHEVVTEIKYISPPVDDRCPNEGSGKRASFDDSVNASLFDGSQFNVSDGDSDANLFLEGTVWDLIPDVKEKLYPHQQEGFEFIWKNLAGNIELQKLKNTDPRREGGCIISHAPGTGKTRLTIEFLKAYLKVFPRCLPIIVAPASLLLTWEYEFKKWDIGVPFHNLNNSELSVKEHDDVVNANNWSNTRQSTEETRMMKLISWFKAKSILGISYSLYEKIAGGGESEDGDEKKRKRASADKRKENSCMRKVLLETPGLLVLDEGHTPRNKNSLIWKVLSKIQTRKRIILSGTPFQNNFLELYNTLSLVRPSFHKTIPHELKKFCQKQEHKKAPKEWSWEPVLGNTTGNTSDDKIKQLKSLMDPFVHVHKGAILQKKLLGLRDCVLCLKPDSFHKQILESFKSSQNSFIFENKQTLASIHPSLLLECKLLEEEESFVDKDRLEKLRLDHNAGVKTKFLVEFVSLCAAHNEKVLVFSQFLDPLRLIIDQLNSALKWTEGKEILYMSGEVRDRQSLIHNFNDENSRSKILLASTRACSEGISLVGASRVVLLDVEWNPSVEKQAISRAYRIGQKKVVYTYHLLTQGTNECDKYCKQAEKHRLSELVFSAKNADNHNEPKNCAADIEDRILDLMIRHENLKDMFVECVVQPKEREFESFGY*