AlfalfaGEDB | Msa1017310

M. sativa cultivar zhongmu-4 / Msa1017310

KEGG: K10875
GO: -
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017310	XP_013448433.1	81.498	1335	153	11	58	1357	1	1276	0.0	1984

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017310	sp\|F4I8S3\|CLSY3_ARATH	48.132	696	318	16	684	1353	723	1401	0.0	613

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017310	A0A072U9G6	81.498	1335	153	11	58	1357	1	1276	0.0	1984

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TFs/TRs:

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Gene ID	Type	Classification
Msa1017310	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017310	MtrunA17_Chr7g0233031	79.009	1372	152	12	1	1357	1	1251	0.0	1963
Msa1017310	MtrunA17_Chr7g0225791	53.540	1384	420	37	94	1352	3	1288	0.0	1171
Msa1017310	MtrunA17_Chr7g0233021	69.757	863	234	9	513	1357	386	1239	0.0	1162
Msa1017310	MtrunA17_Chr7g0233021	45.418	502	115	20	44	463	1	425	4.47e-66	245
Msa1017310	MtrunA17_Chr7g0232971	58.940	1057	324	20	330	1353	318	1297	0.0	1126
Msa1017310	MtrunA17_Chr7g0232991	69.301	658	177	9	716	1353	9	661	0.0	865
Msa1017310	MtrunA17_Chr7g0233001	61.940	536	177	9	831	1352	1	523	0.0	639
Msa1017310	MtrunA17_Chr1g0191141	34.444	720	402	17	659	1338	400	1089	1.76e-111	378
Msa1017310	MtrunA17_Chr7g0224051	33.154	745	417	19	645	1338	389	1103	1.25e-105	362
Msa1017310	MtrunA17_Chr3g0114161	32.787	732	416	18	659	1340	531	1236	5.00e-105	362

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1017310	AT1G05490.1	48.132	696	318	16	684	1353	723	1401	0.0	613
Msa1017310	AT3G24340.1	46.489	712	332	14	649	1349	450	1123	0.0	586
Msa1017310	AT3G42670.2	33.791	728	418	18	652	1340	541	1243	3.35e-104	360
Msa1017310	AT3G42670.3	33.791	728	418	18	652	1340	541	1243	3.35e-104	360
Msa1017310	AT3G42670.1	33.791	728	418	18	652	1340	541	1243	3.35e-104	360
Msa1017310	AT3G42670.4	33.970	733	412	19	652	1340	541	1245	4.21e-104	360
Msa1017310	AT5G20420.1	33.287	727	423	16	652	1340	547	1249	2.55e-98	343
Msa1017310	AT2G21450.3	29.556	653	357	17	692	1305	94	682	1.76e-78	275
Msa1017310	AT2G21450.1	29.556	653	357	17	692	1305	185	773	2.60e-78	277
Msa1017310	AT2G21450.2	29.556	653	357	17	692	1305	192	780	3.09e-78	277

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Find 252 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGAGAAAGTGTGATGA+AGG	0.555325	7_1:-36394565	Msa1017310:CDS
AAAGAAAGCCGTTCCTTGCA+AGG	0.520260	7_1:-36391493	Msa1017310:CDS
AAAGAAGAAGAACACTCTGT+TGG	0.594442	7_1:-36394115	Msa1017310:CDS
AAAGCCGTTCCTTGCAAGGA+GGG	0.594696	7_1:-36391489	Msa1017310:CDS
AAAGGTTTGGACTCTGTTTC+TGG	0.165338	7_1:-36394697	Msa1017310:CDS
AAAGTGTGATGAAGGTGAAA+AGG	0.468193	7_1:-36394557	Msa1017310:CDS
AAATTCTTGATCGGATGATT+CGG	0.462881	7_1:-36389931	Msa1017310:CDS
AACAAAGGAAGGGACTATAA+AGG	0.464103	7_1:-36393024	Msa1017310:CDS
AACAATGGTTTGAATCGAAG+GGG	0.619745	7_1:-36392958	Msa1017310:CDS
AACTCAAATTCTCGCTCCTT+CGG	0.395041	7_1:+36389866	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGTGATGAAGATGATAA+AGG	-	chr7_1:36389952-36389971	Msa1017310:CDS	30.0%
TGATGAAGATGATAAAGGTT+TGG	-	chr7_1:36389957-36389976	Msa1017310:CDS	30.0%
TTCATCATCATCATCATCAA+TGG	+	chr7_1:36390220-36390239	None:intergenic	30.0%
AACTTTGTTGAGAAAAGATG+TGG	-	chr7_1:36390270-36390289	Msa1017310:CDS	30.0%
CATCTGAACATATTGTAATC+GGG	+	chr7_1:36390311-36390330	None:intergenic	30.0%
ACAATATGTTCAGATGAGTA+TGG	-	chr7_1:36390315-36390334	Msa1017310:CDS	30.0%
TGTTAAAGAGGGAGTAAAAA+AGG	-	chr7_1:36390401-36390420	Msa1017310:CDS	30.0%
GTTAAAGAGGGAGTAAAAAA+GGG	-	chr7_1:36390402-36390421	Msa1017310:CDS	30.0%
TAAACTGAATGGAATATCAG+AGG	-	chr7_1:36391004-36391023	Msa1017310:CDS	30.0%
CATGGAAAAGATCAATATGT+TGG	-	chr7_1:36391131-36391150	Msa1017310:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	36389856	36394833	36389856	ID=Msa1017310;Name=Msa1017310
chr7_1	mRNA	36389856	36394833	36389856	ID=Msa1017310-mRNA-1;Parent=Msa1017310;Name=Msa1017310-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|4\|0\|1357
chr7_1	exon	36393397	36394833	36393397	ID=Msa1017310-mRNA-1:exon:6855;Parent=Msa1017310-mRNA-1
chr7_1	exon	36392666	36393253	36392666	ID=Msa1017310-mRNA-1:exon:6854;Parent=Msa1017310-mRNA-1
chr7_1	exon	36392310	36392453	36392310	ID=Msa1017310-mRNA-1:exon:6853;Parent=Msa1017310-mRNA-1
chr7_1	exon	36389856	36391760	36389856	ID=Msa1017310-mRNA-1:exon:6852;Parent=Msa1017310-mRNA-1
chr7_1	CDS	36393397	36394833	36393397	ID=Msa1017310-mRNA-1:cds;Parent=Msa1017310-mRNA-1
chr7_1	CDS	36392666	36393253	36392666	ID=Msa1017310-mRNA-1:cds;Parent=Msa1017310-mRNA-1
chr7_1	CDS	36392310	36392453	36392310	ID=Msa1017310-mRNA-1:cds;Parent=Msa1017310-mRNA-1
chr7_1	CDS	36389856	36391760	36389856	ID=Msa1017310-mRNA-1:cds;Parent=Msa1017310-mRNA-1

Gene Sequence

>Msa1017310

ATGGCTGGTGTTTCTAACAGAACTCGTAGCAAGAATGTTCCACTGTTTCGTAGTCTTTCTCCTGATATGTCATTTTATTCGAAATCAAAGCGGCGAAAGAGTGATGAAGATGATAAAGGTTTGGACTCTGTTTCTGGTTTTTCTAGCAAAACTTGTAGCAAGAGTGTTCCGTTGTTTGGTGTTTCTAGCAGAACTCGTAGCAAAAATGTGCCATTGTTTGGTTGTCTTTCTGTTGATGGTTCATCGAAACGGAGAAAGTGTGATGAAGGTGAAAAGGGTTTGGACTTTGCTTCTGGTTCTAAGAAAATGAAGGTAAAAGAAGAACCTTTTGTTGTTCCTAAGAATGCTAAGGTTATTATTTCCATTGATGATGATGATGATGAAGATGTGAAGATGTTTGATGCTAAAGATGAAAACTTTGTTGAGAAAAGATGTGGTTTGGAAGAAGATAACCCGATTACAATATGTTCAGATGAGTATGGTGAGAGTGATGATGAACATTCTGTTGGTTTTGGCGCTGATAATGAAGAAGAAGAAGATGATAATGTTAAAGAGGGAGTAAAAAAGGGTGAGAGTAAAGGTAGTGGAGGAAATGGTGATATTCATGTCAAAGATGAAAACTTTGTTGATGAAAAGTGTGGCTTGGCACATGAAAACGTGATTATAATAGATACAGATGAAAATGGTGAAAGTGGTAAAGAAGAAGAACACTCTGTTGGTTCTGATTCTGATAATGCTGATGATGATGTTAATGAGAGAGTAAAAAGCGATGAAAGTGGAGGAATTGATGAGTTTGTTGATGAAGATTCTGACGAGATTGATGATGGTGATGATGAAGATTCTGATGGGAGTGAGGATGATGATTCTAGTGACGATTTCAAAGTTGAGGAGCTGAATGAGATTTCTGATAATGATGATGACAGTTCTTCTGACTCTCCTTATGTTGATGAGAAGGAGGAGAAGAAAAAGGGTAATAGAAAAGATTTCAATGTGGTAGAGAAGTTGATTAGAGAGGTAATGGATAGACAATGTGGAATTTCTGAGAAAAATAATGAGAATAGACCATCTTCCACAAGTACTGATGAGTTGGAACATGCAGATCATGCTAGTGTTTCCTCTAGTACCTATGTGAAGAAGGGTTCTTCTTCTAAACTGAATGGAATATCAGAGGCGCTGAAAGCGAAGAGTGTTGATGTGAAAGTGAAAAACGTCTCCGATGAAAGGGTGAATGTTGGAGCGAATGCCAAATCAAAAGACAATGTTGGTGATTCTGATCATGGAAAAGATCAATATGTTGGTTTAGATGTTGGAGGAGTTTTTTCGGCATGGAGCCTTAAAAAGGTCGAAAGAGTTCAAAAGACCAAGGAGGGGGAAGAGAATGAAGTGCTATGGGATGAATTGGATGCAGCCCTTAGAGAATCAGAAGCGGTATCTAAGAATGAAGCATCAGAGGGGAAAAAAGCAAAAAGTGTAAATGTTGCCGAAGCCAAATTCAAATCTAAAGTGAAATACATAGCCAAACCTAATGACAGTGTGAATGTTGCTGACTGTGAAAAAGGAAAAGAAAAATATGTTAAAGGTTTAGATGTTGGAGGAGTTTCATTGGTTCAAACGAAGGAATCAAATAAAGAGAGAATGATGGAGAACAAAGGAAGGGACTATAAAGGTATAGCTAACATCCCTATTGTGAAGAAGAAGGAATATATTGATAACAATGGTTTGAATCGAAGGGGAAAAAGCACACTTTTTATGCCGAAGGAGTTGGGTTTACTTGAACTGCTTGGTACATGCCTCTGGGACGACAAGAATACCGTTAAGGATGATTCAATTGTGTTGGAGATGAAGGATATTGGCATTGATCAGCAAGATATGCAGAAACCACCGACTTGTGTTAAGACACCTCATGAACGGATATGGAGCCTTAAAAAGGTGGAAAAAGTGCTAAAAACCAAGGAGGAGGAAGAGCACGAACCGTTATGGGATGAATTGGATACATCCCTTAGAGAAGAAGATGCTGTATCCAAGATTGGAAAGTTAGAGACAGATGAAGCTAGTGGAAGTCCATCATCTTGTTGTGAACACAACATTTTTCTCGATGAAGAGATTGGTGAATTTTGCAAATTATGTGGCGTGGTTATTACTGAGATCAAATATATCTCAGAACTAGTGGACGATAGATGTCCTAATGAAGGTTCTGGAAAGAGGGCTTCATCTGATGATTCAGTAAATGCCTCACTCTTTGATGGCTCTCAGTTCAATGTTCCTGATGGTGATTCAGATGCTAATTTCTTTCATAAAGATGGCACAGTTTGGGACCTAATTCCGGATGTTAAACAAAAGTTATATCCTCATCAACAAGAAGGCTTTGAATTCATTTGGAAAAACTTGGCAGGAAATACCAATCTTCGCAAGTTAAAGAAAGCCGTTCCTTGCAAGGAGGGTGGCTGCATTATCTCCCATGCTCCTGGAACCGGGAAGACAAGGCTGACTGTAGTATTTCTCACGTCTTATTTGAAAGTGTTTCCGAAATGCTTGCCGGTTATTGTTGCTCCTGCGAATTTGTTACATACTTGGGAAGAAGAGTTCAAAAAATGGGACATTCCATTTCACAATTTGAACAATCGTGAGTTATCTGGTAAAGTGCATGATGATGTTGTTAATTTGCTTAATTGGTCTAATTCACAGCATAGTATAGATACAATGCGGATGGTGAAACTGATTTCGTGGTACAAAGAAAAGAGCATTCTTGGAATCAGTTACAGTTTGTACGAGAAGCTAGCCGGAGGAGGAGGGGAATCTGACGATGAGAGAGGGGAAGATGAGAAAAAGAAAAAACAATCAAGTTTGGAGAAAAGAAAAGAAATTATGGGAAATGTTCTACGTCAAATTCCTGGTTTGTTGGTGTTTGATGAAGGACATACGCCAAGAAACAAAAAAAGTGGTATTTGGCAAGTTTTGTCGGAAGTTCAAGCACGAAAGCGAATCATCCTTTCTGGAACTCCTTTCCAGAACAACTTCATGGAACTATACAACACTTTGAGCTTAGTGAAGCCTTCTTTTCCTAACACAATGCCACACGAGCTGAAAAAGTTTTGCCAAAAGCGGGACCATAAAAAAGCATCTAAAGAATGTATTTGGGAACCAGTTCCTGAGGAAAAGATCAAGCAGTTAAAATTGCTTATGGATCCCTTTGTTCATGTTCACAAAGGCGCGATCCTTCAAAAGATGCTTCCCGGGTTAAGAAAATGTGTGCTGCGTTTGATGCCGGACAGCTTTCACAAGAAAATTCTTGAGGGGATTCAAAGTTCTCAGAATACATTGATCTTTGATATTAAGGAGACAAGGGCATCAGTCCATCCGTCTCTTCTGCTCGAACGCGACCTTTTGGAAGAAGAGGAGTCTGTTCTTGACAAGGACCGGCTAGAAAAGCTTAGATTGAACCCCTACGCAGGTGTCAAAACAAAGTTTTTGTTGGAGTTCGTTAGACTTTGTGCTGCTTTAAATGAGAAAGTTCTTGTGTTCAGCCAATTCCTCAGTCCTTTACACTTAATTATCGAGCAGTTATTAAACTCGTCTTTAGAATGGACGATGGAGAAGGAAATCCTCTTCATTTCTGGAGAGATAAAGGACAGGAAGTCCTTAATCGATACCTTCAATGATGAAAACAGTCATGCAAAGATTCTCCTTGCAACGATAAAAACTTGTTCCGAGGGAATCAGCTTGGTTGGAGCTTCAAGGGTTGTACTACTCGATGTCGTATGGAATCCCTCTGTTGAAAAACAGGCTATTAGTAGAGCTTATAGAATTGGGCAGAAGAAAGTTGTCTACACATACCATCTACTCACTGAAGGGACTAGAGAGTGCGATAAATTTCGCCAACAGGCCAAAAAGGACCGGTTATCTGAACTAGTTTTTTCGGCTAAAAATGATGATAATAAGGAGGAGTTGAGGAGCTGTGCAGCGAACATTGAAGATAAAATTCTTGATCGGATGATTCGGCATGAAAAGCTCAAAGACATGTTTGTTGAGTGTGTGGTACAGCCGAAGGAGCGAGAATTTGAGTTTTGGTATTGA

Protein sequence

>Msa1017310

MAGVSNRTRSKNVPLFRSLSPDMSFYSKSKRRKSDEDDKGLDSVSGFSSKTCSKSVPLFGVSSRTRSKNVPLFGCLSVDGSSKRRKCDEGEKGLDFASGSKKMKVKEEPFVVPKNAKVIISIDDDDDEDVKMFDAKDENFVEKRCGLEEDNPITICSDEYGESDDEHSVGFGADNEEEEDDNVKEGVKKGESKGSGGNGDIHVKDENFVDEKCGLAHENVIIIDTDENGESGKEEEHSVGSDSDNADDDVNERVKSDESGGIDEFVDEDSDEIDDGDDEDSDGSEDDDSSDDFKVEELNEISDNDDDSSSDSPYVDEKEEKKKGNRKDFNVVEKLIREVMDRQCGISEKNNENRPSSTSTDELEHADHASVSSSTYVKKGSSSKLNGISEALKAKSVDVKVKNVSDERVNVGANAKSKDNVGDSDHGKDQYVGLDVGGVFSAWSLKKVERVQKTKEGEENEVLWDELDAALRESEAVSKNEASEGKKAKSVNVAEAKFKSKVKYIAKPNDSVNVADCEKGKEKYVKGLDVGGVSLVQTKESNKERMMENKGRDYKGIANIPIVKKKEYIDNNGLNRRGKSTLFMPKELGLLELLGTCLWDDKNTVKDDSIVLEMKDIGIDQQDMQKPPTCVKTPHERIWSLKKVEKVLKTKEEEEHEPLWDELDTSLREEDAVSKIGKLETDEASGSPSSCCEHNIFLDEEIGEFCKLCGVVITEIKYISELVDDRCPNEGSGKRASSDDSVNASLFDGSQFNVPDGDSDANFFHKDGTVWDLIPDVKQKLYPHQQEGFEFIWKNLAGNTNLRKLKKAVPCKEGGCIISHAPGTGKTRLTVVFLTSYLKVFPKCLPVIVAPANLLHTWEEEFKKWDIPFHNLNNRELSGKVHDDVVNLLNWSNSQHSIDTMRMVKLISWYKEKSILGISYSLYEKLAGGGGESDDERGEDEKKKKQSSLEKRKEIMGNVLRQIPGLLVFDEGHTPRNKKSGIWQVLSEVQARKRIILSGTPFQNNFMELYNTLSLVKPSFPNTMPHELKKFCQKRDHKKASKECIWEPVPEEKIKQLKLLMDPFVHVHKGAILQKMLPGLRKCVLRLMPDSFHKKILEGIQSSQNTLIFDIKETRASVHPSLLLERDLLEEEESVLDKDRLEKLRLNPYAGVKTKFLLEFVRLCAALNEKVLVFSQFLSPLHLIIEQLLNSSLEWTMEKEILFISGEIKDRKSLIDTFNDENSHAKILLATIKTCSEGISLVGASRVVLLDVVWNPSVEKQAISRAYRIGQKKVVYTYHLLTEGTRECDKFRQQAKKDRLSELVFSAKNDDNKEELRSCAANIEDKILDRMIRHEKLKDMFVECVVQPKEREFEFWY*