Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017340 | PNX99521.1 | 54.696 | 181 | 52 | 2 | 24 | 174 | 25 | 205 | 2.32e-50 | 191 |
| Msa1017340 | PNX99521.1 | 65.926 | 270 | 56 | 4 | 172 | 409 | 393 | 658 | 7.37e-107 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017340 | sp|Q9LKR4|FRS10_ARATH | 37.778 | 180 | 74 | 4 | 24 | 174 | 28 | 198 | 9.44e-24 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017340 | A0A2K3N8Z5 | 54.696 | 181 | 52 | 2 | 24 | 174 | 25 | 205 | 1.11e-50 | 191 |
| Msa1017340 | A0A2K3N8Z5 | 65.926 | 270 | 56 | 4 | 172 | 409 | 393 | 658 | 3.52e-107 | 339 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1017340 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017340 | MtrunA17_Chr1g0198761 | 63.504 | 274 | 65 | 3 | 168 | 409 | 479 | 749 | 4.33e-107 | 332 |
| Msa1017340 | MtrunA17_Chr1g0198761 | 50.270 | 185 | 62 | 2 | 20 | 174 | 13 | 197 | 3.23e-48 | 175 |
| Msa1017340 | MtrunA17_Chr5g0431001 | 54.945 | 182 | 53 | 1 | 22 | 174 | 30 | 211 | 2.47e-55 | 190 |
| Msa1017340 | MtrunA17_Chr5g0430921 | 79.310 | 87 | 15 | 1 | 323 | 409 | 1 | 84 | 1.55e-41 | 141 |
| Msa1017340 | MtrunA17_Chr2g0294841 | 28.417 | 278 | 140 | 7 | 168 | 393 | 475 | 745 | 9.52e-25 | 106 |
| Msa1017340 | MtrunA17_Chr2g0294841 | 32.474 | 194 | 86 | 7 | 20 | 174 | 6 | 193 | 7.70e-16 | 79.7 |
| Msa1017340 | MtrunA17_Chr2g0276841 | 32.474 | 194 | 93 | 4 | 168 | 326 | 497 | 687 | 8.68e-24 | 103 |
| Msa1017340 | MtrunA17_Chr2g0276841 | 37.500 | 160 | 64 | 3 | 45 | 174 | 62 | 215 | 3.54e-23 | 102 |
| Msa1017340 | MtrunA17_Chr2g0290391 | 37.255 | 153 | 58 | 3 | 52 | 174 | 50 | 194 | 1.13e-18 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017340 | AT5G28530.4 | 37.778 | 180 | 74 | 4 | 24 | 174 | 28 | 198 | 6.34e-25 | 107 |
| Msa1017340 | AT5G28530.5 | 37.778 | 180 | 74 | 4 | 24 | 174 | 28 | 198 | 6.34e-25 | 107 |
| Msa1017340 | AT5G28530.1 | 37.778 | 180 | 74 | 4 | 24 | 174 | 28 | 198 | 9.60e-25 | 107 |
| Msa1017340 | AT5G28530.3 | 37.778 | 180 | 74 | 4 | 24 | 174 | 28 | 198 | 1.06e-24 | 107 |
| Msa1017340 | AT5G28530.2 | 37.778 | 180 | 74 | 4 | 24 | 174 | 28 | 198 | 1.06e-24 | 107 |
| Msa1017340 | AT1G10240.2 | 32.461 | 191 | 97 | 2 | 168 | 326 | 475 | 665 | 7.45e-24 | 104 |
| Msa1017340 | AT1G10240.2 | 37.975 | 158 | 62 | 3 | 47 | 174 | 42 | 193 | 3.97e-23 | 102 |
| Msa1017340 | AT1G10240.1 | 32.461 | 191 | 97 | 2 | 168 | 326 | 475 | 665 | 7.45e-24 | 104 |
| Msa1017340 | AT1G10240.1 | 37.975 | 158 | 62 | 3 | 47 | 174 | 42 | 193 | 3.97e-23 | 102 |
Find 58 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGATAATTTGATTTATT+TGG | 0.093166 | 7_1:-36473055 | Msa1017340:CDS |
| ACATCATAACCATCATTATT+TGG | 0.153794 | 7_1:+36473012 | None:intergenic |
| TTGACTATGTGACTGCATTT+TGG | 0.212419 | 7_1:+36473219 | None:intergenic |
| ATCAAATTATCTTGACTTGC+AGG | 0.274591 | 7_1:+36473063 | None:intergenic |
| AGTACCATAATTCTCTAATT+AGG | 0.289351 | 7_1:-36473565 | Msa1017340:CDS |
| TTGTCCTAATTAGAGAATTA+TGG | 0.303893 | 7_1:+36473561 | None:intergenic |
| TAGTTCCAGGCTGAGGTTCT+TGG | 0.304969 | 7_1:+36474161 | None:intergenic |
| GTGACAACGTCGAAGCTTCT+TGG | 0.321956 | 7_1:+36472918 | None:intergenic |
| CTACATGAAGATGATGAATA+TGG | 0.324911 | 7_1:-36474211 | Msa1017340:CDS |
| TTTGCAGCATGTTCCTCAAT+AGG | 0.334456 | 7_1:+36473533 | None:intergenic |
| TTACTCACTTCAACATTTCA+TGG | 0.336618 | 7_1:-36474666 | Msa1017340:CDS |
| ATGATTGGTTCCGCCGCAAT+TGG | 0.338559 | 7_1:+36472891 | None:intergenic |
| GCAGCTTCAACTCCACCTTT+TGG | 0.341287 | 7_1:+36472940 | None:intergenic |
| CACATAGTCAAATGCAATAA+TGG | 0.343756 | 7_1:-36473207 | Msa1017340:CDS |
| AAATTCCTCCAACAGATAAA+AGG | 0.355612 | 7_1:-36473090 | Msa1017340:CDS |
| TCAGTCTCTAATTCGATGTT+TGG | 0.382120 | 7_1:-36473169 | Msa1017340:CDS |
| AAATACATTGTAAAATTCAT+AGG | 0.384267 | 7_1:+36474081 | None:intergenic |
| GAACTAGTACTGTTGATGAT+TGG | 0.400395 | 7_1:-36474144 | Msa1017340:CDS |
| AACTAGTACTGTTGATGATT+GGG | 0.417098 | 7_1:-36474143 | Msa1017340:CDS |
| TCATCAACAGTACTAGTTCC+AGG | 0.424449 | 7_1:+36474148 | None:intergenic |
| ATAATTGTTACTTGTCTGAA+TGG | 0.436529 | 7_1:+36473445 | None:intergenic |
| TTTGGAACATCGGGTACATT+GGG | 0.437206 | 7_1:+36473030 | None:intergenic |
| CCATGAGTTATTAGATGATA+AGG | 0.455510 | 7_1:-36473802 | Msa1017340:intron |
| CCATCATTATTTGGAACATC+GGG | 0.457944 | 7_1:+36473021 | None:intergenic |
| ACAATTCCGCGAGTCATGAT+TGG | 0.463296 | 7_1:+36472876 | None:intergenic |
| CTTTCTCTTCTCCATCGAAA+AGG | 0.467284 | 7_1:+36473252 | None:intergenic |
| AATCTTCACGGTGTAGTTGT+AGG | 0.475232 | 7_1:-36473892 | Msa1017340:CDS |
| TGATTGGTTCCGCCGCAATT+GGG | 0.478500 | 7_1:+36472892 | None:intergenic |
| ATTTGGAACATCGGGTACAT+TGG | 0.482649 | 7_1:+36473029 | None:intergenic |
| TGGATTAACTCAAACGCATA+TGG | 0.491586 | 7_1:+36473500 | None:intergenic |
| AAATCCAAAGGTCGGCCAAA+AGG | 0.496241 | 7_1:-36472970 | Msa1017340:CDS |
| CCAAAAGGTTCAAGGCCAAA+AGG | 0.499841 | 7_1:-36472955 | Msa1017340:CDS |
| GAGTCTGAAGATAATCCATC+AGG | 0.500480 | 7_1:-36474001 | Msa1017340:CDS |
| ACCATCATTATTTGGAACAT+CGG | 0.512682 | 7_1:+36473020 | None:intergenic |
| TACTCACTTCAACATTTCAT+GGG | 0.513159 | 7_1:-36474665 | Msa1017340:CDS |
| CATTTCATGGGACCAATCAC+AGG | 0.517417 | 7_1:-36474653 | Msa1017340:intron |
| GAATTTGTTTGTCATCGAGC+TGG | 0.517742 | 7_1:-36473965 | Msa1017340:CDS |
| CCCGATGTTCCAAATAATGA+TGG | 0.520874 | 7_1:-36473021 | Msa1017340:CDS |
| TAGACAATTCAATCTCATGT+TGG | 0.528559 | 7_1:+36473480 | None:intergenic |
| AAAGGAAACGGAAATCTTCA+CGG | 0.530189 | 7_1:-36473904 | Msa1017340:CDS |
| CCAGGCTGAGGTTCTTGGTG+TGG | 0.530208 | 7_1:+36474166 | None:intergenic |
| AAGGTCGGCCAAAAGGTTCA+AGG | 0.530766 | 7_1:-36472963 | Msa1017340:CDS |
| CCACACCAAGAACCTCAGCC+TGG | 0.549756 | 7_1:-36474166 | Msa1017340:CDS |
| CGTTGTCACGTTCCCAATTG+CGG | 0.556435 | 7_1:-36472904 | Msa1017340:CDS |
| ATTGGGATGTTACGATAAGC+GGG | 0.561005 | 7_1:+36473765 | None:intergenic |
| TAGACATCAAGCAGGAGAAG+AGG | 0.565504 | 7_1:-36473603 | Msa1017340:CDS |
| GTCAAAATTAGACATCAAGC+AGG | 0.568777 | 7_1:-36473611 | Msa1017340:CDS |
| TTGTTTCAAAATCCAAAGGT+CGG | 0.583293 | 7_1:-36472978 | Msa1017340:CDS |
| CCTGTTGTTTCAAAATCCAA+AGG | 0.583885 | 7_1:-36472982 | Msa1017340:CDS |
| AATTGGGATGTTACGATAAG+CGG | 0.587373 | 7_1:+36473764 | None:intergenic |
| ATCATTAAAGACAAAAGAGA+GGG | 0.596933 | 7_1:-36473139 | Msa1017340:CDS |
| ACAGTACTAGTTCCAGGCTG+AGG | 0.603967 | 7_1:+36474154 | None:intergenic |
| TGAGTTATTAGATGATAAGG+AGG | 0.622448 | 7_1:-36473799 | Msa1017340:intron |
| AAAGGTTCAAGGCCAAAAGG+TGG | 0.631199 | 7_1:-36472952 | Msa1017340:CDS |
| AATCATTAAAGACAAAAGAG+AGG | 0.632966 | 7_1:-36473140 | Msa1017340:CDS |
| TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 7_1:+36472823 | None:intergenic |
| GCGGAACCAATCATGACTCG+CGG | 0.676119 | 7_1:-36472882 | Msa1017340:CDS |
| TGTCACGTTCCCAATTGCGG+CGG | 0.677873 | 7_1:-36472901 | Msa1017340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATACAAGAAAATA+AGG | - | chr7_1:36473067-36473086 | Msa1017340:CDS | 10.0% |
| !!! | TTTTTTTATACAAGAAAATA+AGG | - | chr7_1:36473067-36473086 | Msa1017340:CDS | 10.0% |
| !! | AAATACATTGTAAAATTCAT+AGG | + | chr7_1:36473423-36473442 | None:intergenic | 15.0% |
| !!! | TCAAGATAATTTGATTTATT+TGG | - | chr7_1:36474446-36474465 | Msa1017340:intron | 15.0% |
| !!! | TCAATATTTTTCTTTTTGTT+TGG | + | chr7_1:36474651-36474670 | None:intergenic | 15.0% |
| !! | AAATACATTGTAAAATTCAT+AGG | + | chr7_1:36473423-36473442 | None:intergenic | 15.0% |
| !!! | TCAAGATAATTTGATTTATT+TGG | - | chr7_1:36474446-36474465 | Msa1017340:intron | 15.0% |
| !!! | TCAATATTTTTCTTTTTGTT+TGG | + | chr7_1:36474651-36474670 | None:intergenic | 15.0% |
| !!! | GTTTTGATAATTAAAATGCA+TGG | - | chr7_1:36472898-36472917 | Msa1017340:CDS | 20.0% |
| !!! | GAAATTGTTATTAGTTTGAT+GGG | - | chr7_1:36472980-36472999 | Msa1017340:CDS | 20.0% |
| !!! | AAATTGTTATTAGTTTGATG+GGG | - | chr7_1:36472981-36473000 | Msa1017340:CDS | 20.0% |
| !!! | AAGTACGTTTTTGTTTTTTA+GGG | + | chr7_1:36473130-36473149 | None:intergenic | 20.0% |
| !!! | AAAGTACGTTTTTGTTTTTT+AGG | + | chr7_1:36473131-36473150 | None:intergenic | 20.0% |
| !! | AATGATTCAGATTTGAATTA+AGG | - | chr7_1:36473197-36473216 | Msa1017340:CDS | 20.0% |
| !! | ATTAAGGATTAATATGACAT+CGG | - | chr7_1:36473213-36473232 | Msa1017340:CDS | 20.0% |
| !!! | TTAAAATTTTGTCCTTCAAA+AGG | + | chr7_1:36473386-36473405 | None:intergenic | 20.0% |
| !!! | ATATTATTGTTTTCAAAAGC+AGG | - | chr7_1:36473775-36473794 | Msa1017340:CDS | 20.0% |
| !!! | GTTTTGATAATTAAAATGCA+TGG | - | chr7_1:36472898-36472917 | Msa1017340:CDS | 20.0% |
| !!! | GAAATTGTTATTAGTTTGAT+GGG | - | chr7_1:36472980-36472999 | Msa1017340:CDS | 20.0% |
| !!! | AAATTGTTATTAGTTTGATG+GGG | - | chr7_1:36472981-36473000 | Msa1017340:CDS | 20.0% |
| !!! | AAGTACGTTTTTGTTTTTTA+GGG | + | chr7_1:36473130-36473149 | None:intergenic | 20.0% |
| !!! | AAAGTACGTTTTTGTTTTTT+AGG | + | chr7_1:36473131-36473150 | None:intergenic | 20.0% |
| !! | AATGATTCAGATTTGAATTA+AGG | - | chr7_1:36473197-36473216 | Msa1017340:CDS | 20.0% |
| !! | ATTAAGGATTAATATGACAT+CGG | - | chr7_1:36473213-36473232 | Msa1017340:CDS | 20.0% |
| !!! | TTAAAATTTTGTCCTTCAAA+AGG | + | chr7_1:36473386-36473405 | None:intergenic | 20.0% |
| !!! | ATATTATTGTTTTCAAAAGC+AGG | - | chr7_1:36473775-36473794 | Msa1017340:CDS | 20.0% |
| !! | TTGATAATTAAAATGCATGG+AGG | - | chr7_1:36472901-36472920 | Msa1017340:CDS | 25.0% |
| ! | TGATAATTAAAATGCATGGA+GGG | - | chr7_1:36472902-36472921 | Msa1017340:CDS | 25.0% |
| !! | CGAAATTGTTATTAGTTTGA+TGG | - | chr7_1:36472979-36472998 | Msa1017340:CDS | 25.0% |
| !!! | CTTTCGTTTTTCAAATGATA+GGG | - | chr7_1:36473006-36473025 | Msa1017340:CDS | 25.0% |
| ! | TAAGAAATAATGCTAGTGAT+TGG | - | chr7_1:36473239-36473258 | Msa1017340:CDS | 25.0% |
| !!! | TGAAGGACAAAATTTTAACA+CGG | - | chr7_1:36473388-36473407 | Msa1017340:intron | 25.0% |
| !!! | GAAAAAATGGATTTTCGATT+AGG | - | chr7_1:36473447-36473466 | Msa1017340:CDS | 25.0% |
| ! | TTGATGAAGTGAAAAATCAA+AGG | - | chr7_1:36473579-36473598 | Msa1017340:CDS | 25.0% |
| ! | AAGTGAAAAATCAAAGGAAA+CGG | - | chr7_1:36473585-36473604 | Msa1017340:CDS | 25.0% |
| !!! | TAAAGGCTTTGAAATAAAGT+GGG | - | chr7_1:36473648-36473667 | Msa1017340:intron | 25.0% |
| ! | TTAGAGAAATCAATAGATAC+AGG | - | chr7_1:36473832-36473851 | Msa1017340:intron | 25.0% |
| ! | AGTACCATAATTCTCTAATT+AGG | - | chr7_1:36473936-36473955 | Msa1017340:CDS | 25.0% |
| ! | TTGTCCTAATTAGAGAATTA+TGG | + | chr7_1:36473943-36473962 | None:intergenic | 25.0% |
| !! | ATAATTGTTACTTGTCTGAA+TGG | + | chr7_1:36474059-36474078 | None:intergenic | 25.0% |
| !!! | TGTAAAGAATTTGAGTTTTC+TGG | - | chr7_1:36474156-36474175 | Msa1017340:CDS | 25.0% |
| !!! | GAAAAGGAAGATATTTTGAT+GGG | + | chr7_1:36474236-36474255 | None:intergenic | 25.0% |
| ! | AATCATTAAAGACAAAAGAG+AGG | - | chr7_1:36474361-36474380 | Msa1017340:intron | 25.0% |
| ! | ATCATTAAAGACAAAAGAGA+GGG | - | chr7_1:36474362-36474381 | Msa1017340:intron | 25.0% |
| ! | ACATCATAACCATCATTATT+TGG | + | chr7_1:36474492-36474511 | None:intergenic | 25.0% |
| !! | TTGATAATTAAAATGCATGG+AGG | - | chr7_1:36472901-36472920 | Msa1017340:CDS | 25.0% |
| ! | TGATAATTAAAATGCATGGA+GGG | - | chr7_1:36472902-36472921 | Msa1017340:CDS | 25.0% |
| !! | CGAAATTGTTATTAGTTTGA+TGG | - | chr7_1:36472979-36472998 | Msa1017340:CDS | 25.0% |
| !!! | CTTTCGTTTTTCAAATGATA+GGG | - | chr7_1:36473006-36473025 | Msa1017340:CDS | 25.0% |
| ! | TAAGAAATAATGCTAGTGAT+TGG | - | chr7_1:36473239-36473258 | Msa1017340:CDS | 25.0% |
| !!! | TGAAGGACAAAATTTTAACA+CGG | - | chr7_1:36473388-36473407 | Msa1017340:intron | 25.0% |
| !!! | GAAAAAATGGATTTTCGATT+AGG | - | chr7_1:36473447-36473466 | Msa1017340:CDS | 25.0% |
| ! | TTGATGAAGTGAAAAATCAA+AGG | - | chr7_1:36473579-36473598 | Msa1017340:CDS | 25.0% |
| ! | AAGTGAAAAATCAAAGGAAA+CGG | - | chr7_1:36473585-36473604 | Msa1017340:CDS | 25.0% |
| !!! | TAAAGGCTTTGAAATAAAGT+GGG | - | chr7_1:36473648-36473667 | Msa1017340:intron | 25.0% |
| ! | TTAGAGAAATCAATAGATAC+AGG | - | chr7_1:36473832-36473851 | Msa1017340:intron | 25.0% |
| ! | AGTACCATAATTCTCTAATT+AGG | - | chr7_1:36473936-36473955 | Msa1017340:CDS | 25.0% |
| ! | TTGTCCTAATTAGAGAATTA+TGG | + | chr7_1:36473943-36473962 | None:intergenic | 25.0% |
| !! | ATAATTGTTACTTGTCTGAA+TGG | + | chr7_1:36474059-36474078 | None:intergenic | 25.0% |
| !!! | TGTAAAGAATTTGAGTTTTC+TGG | - | chr7_1:36474156-36474175 | Msa1017340:CDS | 25.0% |
| !!! | GAAAAGGAAGATATTTTGAT+GGG | + | chr7_1:36474236-36474255 | None:intergenic | 25.0% |
| ! | AATCATTAAAGACAAAAGAG+AGG | - | chr7_1:36474361-36474380 | Msa1017340:intron | 25.0% |
| ! | ATCATTAAAGACAAAAGAGA+GGG | - | chr7_1:36474362-36474381 | Msa1017340:intron | 25.0% |
| ! | ACATCATAACCATCATTATT+TGG | + | chr7_1:36474492-36474511 | None:intergenic | 25.0% |
| TTACTCACTTCAACATTTCA+TGG | - | chr7_1:36472835-36472854 | Msa1017340:CDS | 30.0% | |
| TACTCACTTCAACATTTCAT+GGG | - | chr7_1:36472836-36472855 | Msa1017340:CDS | 30.0% | |
| ATGAAAAACTAACCTGTGAT+TGG | + | chr7_1:36472863-36472882 | None:intergenic | 30.0% | |
| CCTATCATTTGAAAAACGAA+AGG | + | chr7_1:36473008-36473027 | None:intergenic | 30.0% | |
| !! | CCTTTCGTTTTTCAAATGAT+AGG | - | chr7_1:36473005-36473024 | Msa1017340:CDS | 30.0% |
| !!! | ATGTGGGTTTTTAGTTTGAT+GGG | - | chr7_1:36473031-36473050 | Msa1017340:CDS | 30.0% |
| CTACATGAAGATGATGAATA+TGG | - | chr7_1:36473290-36473309 | Msa1017340:CDS | 30.0% | |
| !! | AACTAGTACTGTTGATGATT+GGG | - | chr7_1:36473358-36473377 | Msa1017340:intron | 30.0% |
| AATGTATTTGCGCGAAAAAA+TGG | - | chr7_1:36473434-36473453 | Msa1017340:CDS | 30.0% | |
| ! | TCTCTTTTATAAACTCCTGA+TGG | + | chr7_1:36473518-36473537 | None:intergenic | 30.0% |
| !! | CTAAAGGCTTTGAAATAAAG+TGG | - | chr7_1:36473647-36473666 | Msa1017340:intron | 30.0% |
| CCTTATCATCTAATAACTCA+TGG | + | chr7_1:36473702-36473721 | None:intergenic | 30.0% | |
| CCATGAGTTATTAGATGATA+AGG | - | chr7_1:36473699-36473718 | Msa1017340:intron | 30.0% | |
| TGAGTTATTAGATGATAAGG+AGG | - | chr7_1:36473702-36473721 | Msa1017340:intron | 30.0% | |
| !! | TACGATTTTGATCGTCAATT+GGG | + | chr7_1:36473756-36473775 | None:intergenic | 30.0% |
| !! | ATACGATTTTGATCGTCAAT+TGG | + | chr7_1:36473757-36473776 | None:intergenic | 30.0% |
| !! | AACTTACCATTTTTGTGAGT+AGG | - | chr7_1:36473856-36473875 | Msa1017340:intron | 30.0% |
| TAGACAATTCAATCTCATGT+TGG | + | chr7_1:36474024-36474043 | None:intergenic | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | + | chr7_1:36474237-36474256 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | - | chr7_1:36474238-36474257 | Msa1017340:intron | 30.0% |
| CACATAGTCAAATGCAATAA+TGG | - | chr7_1:36474294-36474313 | Msa1017340:intron | 30.0% | |
| AAATTCCTCCAACAGATAAA+AGG | - | chr7_1:36474411-36474430 | Msa1017340:intron | 30.0% | |
| !! | ATCAAATTATCTTGACTTGC+AGG | + | chr7_1:36474441-36474460 | None:intergenic | 30.0% |
| ! | ACCATCATTATTTGGAACAT+CGG | + | chr7_1:36474484-36474503 | None:intergenic | 30.0% |
| TTGTTTCAAAATCCAAAGGT+CGG | - | chr7_1:36474523-36474542 | Msa1017340:intron | 30.0% | |
| TTACTCACTTCAACATTTCA+TGG | - | chr7_1:36472835-36472854 | Msa1017340:CDS | 30.0% | |
| TACTCACTTCAACATTTCAT+GGG | - | chr7_1:36472836-36472855 | Msa1017340:CDS | 30.0% | |
| ATGAAAAACTAACCTGTGAT+TGG | + | chr7_1:36472863-36472882 | None:intergenic | 30.0% | |
| CCTATCATTTGAAAAACGAA+AGG | + | chr7_1:36473008-36473027 | None:intergenic | 30.0% | |
| !! | CCTTTCGTTTTTCAAATGAT+AGG | - | chr7_1:36473005-36473024 | Msa1017340:CDS | 30.0% |
| !!! | ATGTGGGTTTTTAGTTTGAT+GGG | - | chr7_1:36473031-36473050 | Msa1017340:CDS | 30.0% |
| CTACATGAAGATGATGAATA+TGG | - | chr7_1:36473290-36473309 | Msa1017340:CDS | 30.0% | |
| !! | AACTAGTACTGTTGATGATT+GGG | - | chr7_1:36473358-36473377 | Msa1017340:intron | 30.0% |
| AATGTATTTGCGCGAAAAAA+TGG | - | chr7_1:36473434-36473453 | Msa1017340:CDS | 30.0% | |
| ! | TCTCTTTTATAAACTCCTGA+TGG | + | chr7_1:36473518-36473537 | None:intergenic | 30.0% |
| !! | CTAAAGGCTTTGAAATAAAG+TGG | - | chr7_1:36473647-36473666 | Msa1017340:intron | 30.0% |
| CCTTATCATCTAATAACTCA+TGG | + | chr7_1:36473702-36473721 | None:intergenic | 30.0% | |
| CCATGAGTTATTAGATGATA+AGG | - | chr7_1:36473699-36473718 | Msa1017340:intron | 30.0% | |
| TGAGTTATTAGATGATAAGG+AGG | - | chr7_1:36473702-36473721 | Msa1017340:intron | 30.0% | |
| !! | TACGATTTTGATCGTCAATT+GGG | + | chr7_1:36473756-36473775 | None:intergenic | 30.0% |
| !! | ATACGATTTTGATCGTCAAT+TGG | + | chr7_1:36473757-36473776 | None:intergenic | 30.0% |
| !! | AACTTACCATTTTTGTGAGT+AGG | - | chr7_1:36473856-36473875 | Msa1017340:intron | 30.0% |
| TAGACAATTCAATCTCATGT+TGG | + | chr7_1:36474024-36474043 | None:intergenic | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | + | chr7_1:36474237-36474256 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | - | chr7_1:36474238-36474257 | Msa1017340:intron | 30.0% |
| CACATAGTCAAATGCAATAA+TGG | - | chr7_1:36474294-36474313 | Msa1017340:intron | 30.0% | |
| AAATTCCTCCAACAGATAAA+AGG | - | chr7_1:36474411-36474430 | Msa1017340:intron | 30.0% | |
| !! | ATCAAATTATCTTGACTTGC+AGG | + | chr7_1:36474441-36474460 | None:intergenic | 30.0% |
| ! | ACCATCATTATTTGGAACAT+CGG | + | chr7_1:36474484-36474503 | None:intergenic | 30.0% |
| TTGTTTCAAAATCCAAAGGT+CGG | - | chr7_1:36474523-36474542 | Msa1017340:intron | 30.0% | |
| ! | AATCTTGTTGTAGCAAGCAA+AGG | + | chr7_1:36472929-36472948 | None:intergenic | 35.0% |
| TTTCAAATGATAGGGACATG+TGG | - | chr7_1:36473014-36473033 | Msa1017340:CDS | 35.0% | |
| TTCAAATGATAGGGACATGT+GGG | - | chr7_1:36473015-36473034 | Msa1017340:CDS | 35.0% | |
| !!! | CATGTGGGTTTTTAGTTTGA+TGG | - | chr7_1:36473030-36473049 | Msa1017340:CDS | 35.0% |
| !! | GAACTAGTACTGTTGATGAT+TGG | - | chr7_1:36473357-36473376 | Msa1017340:intron | 35.0% |
| AAAGGAAACGGAAATCTTCA+CGG | - | chr7_1:36473597-36473616 | Msa1017340:CDS | 35.0% | |
| !! | GCAAAGTTGTTGGTTTCTAA+AGG | - | chr7_1:36473631-36473650 | Msa1017340:intron | 35.0% |
| CATCTAATAACTCATGGTTG+TGG | + | chr7_1:36473696-36473715 | None:intergenic | 35.0% | |
| AATTGGGATGTTACGATAAG+CGG | + | chr7_1:36473740-36473759 | None:intergenic | 35.0% | |
| !! | TACCATTTTTGTGAGTAGGT+TGG | - | chr7_1:36473860-36473879 | Msa1017340:intron | 35.0% |
| GTCAAAATTAGACATCAAGC+AGG | - | chr7_1:36473890-36473909 | Msa1017340:CDS | 35.0% | |
| ! | TAGGACAACTTTTCCTATTG+AGG | - | chr7_1:36473955-36473974 | Msa1017340:CDS | 35.0% |
| TGGATTAACTCAAACGCATA+TGG | + | chr7_1:36474004-36474023 | None:intergenic | 35.0% | |
| ! | TTTTACAAGTAGCACTCGAA+TGG | + | chr7_1:36474199-36474218 | None:intergenic | 35.0% |
| ! | TGACTATGTGACTGCATTTT+GGG | + | chr7_1:36474284-36474303 | None:intergenic | 35.0% |
| ! | TTGACTATGTGACTGCATTT+TGG | + | chr7_1:36474285-36474304 | None:intergenic | 35.0% |
| TCAGTCTCTAATTCGATGTT+TGG | - | chr7_1:36474332-36474351 | Msa1017340:intron | 35.0% | |
| ! | CCATCATTATTTGGAACATC+GGG | + | chr7_1:36474483-36474502 | None:intergenic | 35.0% |
| !!! | CCTTTGGATTTTGAAACAAC+AGG | + | chr7_1:36474522-36474541 | None:intergenic | 35.0% |
| !! | CCTGTTGTTTCAAAATCCAA+AGG | - | chr7_1:36474519-36474538 | Msa1017340:intron | 35.0% |
| ! | AATCTTGTTGTAGCAAGCAA+AGG | + | chr7_1:36472929-36472948 | None:intergenic | 35.0% |
| TTTCAAATGATAGGGACATG+TGG | - | chr7_1:36473014-36473033 | Msa1017340:CDS | 35.0% | |
| TTCAAATGATAGGGACATGT+GGG | - | chr7_1:36473015-36473034 | Msa1017340:CDS | 35.0% | |
| !!! | CATGTGGGTTTTTAGTTTGA+TGG | - | chr7_1:36473030-36473049 | Msa1017340:CDS | 35.0% |
| !! | GAACTAGTACTGTTGATGAT+TGG | - | chr7_1:36473357-36473376 | Msa1017340:intron | 35.0% |
| AAAGGAAACGGAAATCTTCA+CGG | - | chr7_1:36473597-36473616 | Msa1017340:CDS | 35.0% | |
| !! | GCAAAGTTGTTGGTTTCTAA+AGG | - | chr7_1:36473631-36473650 | Msa1017340:intron | 35.0% |
| CATCTAATAACTCATGGTTG+TGG | + | chr7_1:36473696-36473715 | None:intergenic | 35.0% | |
| AATTGGGATGTTACGATAAG+CGG | + | chr7_1:36473740-36473759 | None:intergenic | 35.0% | |
| !! | TACCATTTTTGTGAGTAGGT+TGG | - | chr7_1:36473860-36473879 | Msa1017340:intron | 35.0% |
| GTCAAAATTAGACATCAAGC+AGG | - | chr7_1:36473890-36473909 | Msa1017340:CDS | 35.0% | |
| ! | TAGGACAACTTTTCCTATTG+AGG | - | chr7_1:36473955-36473974 | Msa1017340:CDS | 35.0% |
| TGGATTAACTCAAACGCATA+TGG | + | chr7_1:36474004-36474023 | None:intergenic | 35.0% | |
| ! | TTTTACAAGTAGCACTCGAA+TGG | + | chr7_1:36474199-36474218 | None:intergenic | 35.0% |
| ! | TGACTATGTGACTGCATTTT+GGG | + | chr7_1:36474284-36474303 | None:intergenic | 35.0% |
| ! | TTGACTATGTGACTGCATTT+TGG | + | chr7_1:36474285-36474304 | None:intergenic | 35.0% |
| TCAGTCTCTAATTCGATGTT+TGG | - | chr7_1:36474332-36474351 | Msa1017340:intron | 35.0% | |
| ! | CCATCATTATTTGGAACATC+GGG | + | chr7_1:36474483-36474502 | None:intergenic | 35.0% |
| !!! | CCTTTGGATTTTGAAACAAC+AGG | + | chr7_1:36474522-36474541 | None:intergenic | 35.0% |
| !! | CCTGTTGTTTCAAAATCCAA+AGG | - | chr7_1:36474519-36474538 | Msa1017340:intron | 35.0% |
| TCATCAACAGTACTAGTTCC+AGG | + | chr7_1:36473356-36473375 | None:intergenic | 40.0% | |
| ! | GATGATTGGGTTCCTTTTGA+AGG | - | chr7_1:36473371-36473390 | Msa1017340:intron | 40.0% |
| GAGTCTGAAGATAATCCATC+AGG | - | chr7_1:36473500-36473519 | Msa1017340:CDS | 40.0% | |
| ! | GAATTTGTTTGTCATCGAGC+TGG | - | chr7_1:36473536-36473555 | Msa1017340:CDS | 40.0% |
| AATCTTCACGGTGTAGTTGT+AGG | - | chr7_1:36473609-36473628 | Msa1017340:CDS | 40.0% | |
| GTAGTTGTAGGCAAAGTTGT+TGG | - | chr7_1:36473621-36473640 | Msa1017340:CDS | 40.0% | |
| !! | AGGCTTTGAAATAAAGTGGG+TGG | - | chr7_1:36473651-36473670 | Msa1017340:intron | 40.0% |
| ATTGGGATGTTACGATAAGC+GGG | + | chr7_1:36473739-36473758 | None:intergenic | 40.0% | |
| CACCAACCTACTCACAAAAA+TGG | + | chr7_1:36473865-36473884 | None:intergenic | 40.0% | |
| TTTGCAGCATGTTCCTCAAT+AGG | + | chr7_1:36473971-36473990 | None:intergenic | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | - | chr7_1:36474087-36474106 | Msa1017340:CDS | 40.0% |
| CTTTCTCTTCTCCATCGAAA+AGG | + | chr7_1:36474252-36474271 | None:intergenic | 40.0% | |
| ! | TTTGGAACATCGGGTACATT+GGG | + | chr7_1:36474474-36474493 | None:intergenic | 40.0% |
| ! | ATTTGGAACATCGGGTACAT+TGG | + | chr7_1:36474475-36474494 | None:intergenic | 40.0% |
| CCCGATGTTCCAAATAATGA+TGG | - | chr7_1:36474480-36474499 | Msa1017340:intron | 40.0% | |
| TCATCAACAGTACTAGTTCC+AGG | + | chr7_1:36473356-36473375 | None:intergenic | 40.0% | |
| ! | GATGATTGGGTTCCTTTTGA+AGG | - | chr7_1:36473371-36473390 | Msa1017340:intron | 40.0% |
| GAGTCTGAAGATAATCCATC+AGG | - | chr7_1:36473500-36473519 | Msa1017340:CDS | 40.0% | |
| ! | GAATTTGTTTGTCATCGAGC+TGG | - | chr7_1:36473536-36473555 | Msa1017340:CDS | 40.0% |
| AATCTTCACGGTGTAGTTGT+AGG | - | chr7_1:36473609-36473628 | Msa1017340:CDS | 40.0% | |
| GTAGTTGTAGGCAAAGTTGT+TGG | - | chr7_1:36473621-36473640 | Msa1017340:CDS | 40.0% | |
| !! | AGGCTTTGAAATAAAGTGGG+TGG | - | chr7_1:36473651-36473670 | Msa1017340:intron | 40.0% |
| ATTGGGATGTTACGATAAGC+GGG | + | chr7_1:36473739-36473758 | None:intergenic | 40.0% | |
| CACCAACCTACTCACAAAAA+TGG | + | chr7_1:36473865-36473884 | None:intergenic | 40.0% | |
| TTTGCAGCATGTTCCTCAAT+AGG | + | chr7_1:36473971-36473990 | None:intergenic | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | - | chr7_1:36474087-36474106 | Msa1017340:CDS | 40.0% |
| CTTTCTCTTCTCCATCGAAA+AGG | + | chr7_1:36474252-36474271 | None:intergenic | 40.0% | |
| ! | TTTGGAACATCGGGTACATT+GGG | + | chr7_1:36474474-36474493 | None:intergenic | 40.0% |
| ! | ATTTGGAACATCGGGTACAT+TGG | + | chr7_1:36474475-36474494 | None:intergenic | 40.0% |
| CCCGATGTTCCAAATAATGA+TGG | - | chr7_1:36474480-36474499 | Msa1017340:intron | 40.0% | |
| CATTTCATGGGACCAATCAC+AGG | - | chr7_1:36472848-36472867 | Msa1017340:CDS | 45.0% | |
| TAGACATCAAGCAGGAGAAG+AGG | - | chr7_1:36473898-36473917 | Msa1017340:CDS | 45.0% | |
| GCGCATCATACCAAAGTTGA+TGG | - | chr7_1:36474084-36474103 | Msa1017340:CDS | 45.0% | |
| TAGACGACCACCATCAACTT+TGG | + | chr7_1:36474097-36474116 | None:intergenic | 45.0% | |
| ! | GCATGCCTTTTATCTGTTGG+AGG | + | chr7_1:36474419-36474438 | None:intergenic | 45.0% |
| ! | CAGGCATGCCTTTTATCTGT+TGG | + | chr7_1:36474422-36474441 | None:intergenic | 45.0% |
| AAATCCAAAGGTCGGCCAAA+AGG | - | chr7_1:36474531-36474550 | Msa1017340:intron | 45.0% | |
| !!! | CCTTTTGGCCTTGAACCTTT+TGG | + | chr7_1:36474549-36474568 | None:intergenic | 45.0% |
| CCAAAAGGTTCAAGGCCAAA+AGG | - | chr7_1:36474546-36474565 | Msa1017340:intron | 45.0% | |
| AAAGGTTCAAGGCCAAAAGG+TGG | - | chr7_1:36474549-36474568 | Msa1017340:intron | 45.0% | |
| ACAATTCCGCGAGTCATGAT+TGG | + | chr7_1:36474628-36474647 | None:intergenic | 45.0% | |
| CATTTCATGGGACCAATCAC+AGG | - | chr7_1:36472848-36472867 | Msa1017340:CDS | 45.0% | |
| TAGACATCAAGCAGGAGAAG+AGG | - | chr7_1:36473898-36473917 | Msa1017340:CDS | 45.0% | |
| GCGCATCATACCAAAGTTGA+TGG | - | chr7_1:36474084-36474103 | Msa1017340:CDS | 45.0% | |
| TAGACGACCACCATCAACTT+TGG | + | chr7_1:36474097-36474116 | None:intergenic | 45.0% | |
| ! | GCATGCCTTTTATCTGTTGG+AGG | + | chr7_1:36474419-36474438 | None:intergenic | 45.0% |
| ! | CAGGCATGCCTTTTATCTGT+TGG | + | chr7_1:36474422-36474441 | None:intergenic | 45.0% |
| AAATCCAAAGGTCGGCCAAA+AGG | - | chr7_1:36474531-36474550 | Msa1017340:intron | 45.0% | |
| !!! | CCTTTTGGCCTTGAACCTTT+TGG | + | chr7_1:36474549-36474568 | None:intergenic | 45.0% |
| CCAAAAGGTTCAAGGCCAAA+AGG | - | chr7_1:36474546-36474565 | Msa1017340:intron | 45.0% | |
| AAAGGTTCAAGGCCAAAAGG+TGG | - | chr7_1:36474549-36474568 | Msa1017340:intron | 45.0% | |
| ACAATTCCGCGAGTCATGAT+TGG | + | chr7_1:36474628-36474647 | None:intergenic | 45.0% | |
| TAGTTCCAGGCTGAGGTTCT+TGG | + | chr7_1:36473343-36473362 | None:intergenic | 50.0% | |
| ACAGTACTAGTTCCAGGCTG+AGG | + | chr7_1:36473350-36473369 | None:intergenic | 50.0% | |
| ATGGTGGTCGTCTAGTAAGC+TGG | - | chr7_1:36474103-36474122 | Msa1017340:CDS | 50.0% | |
| ! | TGAACCTTTTGGCCGACCTT+TGG | + | chr7_1:36474538-36474557 | None:intergenic | 50.0% |
| AAGGTCGGCCAAAAGGTTCA+AGG | - | chr7_1:36474538-36474557 | Msa1017340:intron | 50.0% | |
| ! | GCAGCTTCAACTCCACCTTT+TGG | + | chr7_1:36474564-36474583 | None:intergenic | 50.0% |
| GTGACAACGTCGAAGCTTCT+TGG | + | chr7_1:36474586-36474605 | None:intergenic | 50.0% | |
| CGTTGTCACGTTCCCAATTG+CGG | - | chr7_1:36474597-36474616 | Msa1017340:intron | 50.0% | |
| ! | TGATTGGTTCCGCCGCAATT+GGG | + | chr7_1:36474612-36474631 | None:intergenic | 50.0% |
| ! | ATGATTGGTTCCGCCGCAAT+TGG | + | chr7_1:36474613-36474632 | None:intergenic | 50.0% |
| TAGTTCCAGGCTGAGGTTCT+TGG | + | chr7_1:36473343-36473362 | None:intergenic | 50.0% | |
| ACAGTACTAGTTCCAGGCTG+AGG | + | chr7_1:36473350-36473369 | None:intergenic | 50.0% | |
| ATGGTGGTCGTCTAGTAAGC+TGG | - | chr7_1:36474103-36474122 | Msa1017340:CDS | 50.0% | |
| ! | TGAACCTTTTGGCCGACCTT+TGG | + | chr7_1:36474538-36474557 | None:intergenic | 50.0% |
| AAGGTCGGCCAAAAGGTTCA+AGG | - | chr7_1:36474538-36474557 | Msa1017340:intron | 50.0% | |
| ! | GCAGCTTCAACTCCACCTTT+TGG | + | chr7_1:36474564-36474583 | None:intergenic | 50.0% |
| GTGACAACGTCGAAGCTTCT+TGG | + | chr7_1:36474586-36474605 | None:intergenic | 50.0% | |
| CGTTGTCACGTTCCCAATTG+CGG | - | chr7_1:36474597-36474616 | Msa1017340:intron | 50.0% | |
| ! | TGATTGGTTCCGCCGCAATT+GGG | + | chr7_1:36474612-36474631 | None:intergenic | 50.0% |
| ! | ATGATTGGTTCCGCCGCAAT+TGG | + | chr7_1:36474613-36474632 | None:intergenic | 50.0% |
| TGTCACGTTCCCAATTGCGG+CGG | - | chr7_1:36474600-36474619 | Msa1017340:intron | 55.0% | |
| GCGGAACCAATCATGACTCG+CGG | - | chr7_1:36474619-36474638 | Msa1017340:intron | 55.0% | |
| TGTCACGTTCCCAATTGCGG+CGG | - | chr7_1:36474600-36474619 | Msa1017340:intron | 55.0% | |
| GCGGAACCAATCATGACTCG+CGG | - | chr7_1:36474619-36474638 | Msa1017340:intron | 55.0% | |
| CCAGGCTGAGGTTCTTGGTG+TGG | + | chr7_1:36473338-36473357 | None:intergenic | 60.0% | |
| CCACACCAAGAACCTCAGCC+TGG | - | chr7_1:36473335-36473354 | Msa1017340:intron | 60.0% | |
| CCAGGCTGAGGTTCTTGGTG+TGG | + | chr7_1:36473338-36473357 | None:intergenic | 60.0% | |
| CCACACCAAGAACCTCAGCC+TGG | - | chr7_1:36473335-36473354 | Msa1017340:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 36472828 | 36474695 | 36472828 | ID=Msa1017340;Name=Msa1017340 |
| chr7_1 | mRNA | 36472828 | 36474695 | 36472828 | ID=Msa1017340-mRNA-1;Parent=Msa1017340;Name=Msa1017340-mRNA-1;_AED=0.17;_eAED=0.18;_QI=0|0|0|0.8|0.5|0.6|5|0|409 |
| chr7_1 | exon | 36474654 | 36474695 | 36474654 | ID=Msa1017340-mRNA-1:exon:6876;Parent=Msa1017340-mRNA-1 |
| chr7_1 | exon | 36473888 | 36474254 | 36473888 | ID=Msa1017340-mRNA-1:exon:6875;Parent=Msa1017340-mRNA-1 |
| chr7_1 | exon | 36473719 | 36473810 | 36473719 | ID=Msa1017340-mRNA-1:exon:6874;Parent=Msa1017340-mRNA-1 |
| chr7_1 | exon | 36473425 | 36473645 | 36473425 | ID=Msa1017340-mRNA-1:exon:6873;Parent=Msa1017340-mRNA-1 |
| chr7_1 | exon | 36472828 | 36473332 | 36472828 | ID=Msa1017340-mRNA-1:exon:6872;Parent=Msa1017340-mRNA-1 |
| chr7_1 | CDS | 36474654 | 36474695 | 36474654 | ID=Msa1017340-mRNA-1:cds;Parent=Msa1017340-mRNA-1 |
| chr7_1 | CDS | 36473888 | 36474254 | 36473888 | ID=Msa1017340-mRNA-1:cds;Parent=Msa1017340-mRNA-1 |
| chr7_1 | CDS | 36473719 | 36473810 | 36473719 | ID=Msa1017340-mRNA-1:cds;Parent=Msa1017340-mRNA-1 |
| chr7_1 | CDS | 36473425 | 36473645 | 36473425 | ID=Msa1017340-mRNA-1:cds;Parent=Msa1017340-mRNA-1 |
| chr7_1 | CDS | 36472828 | 36473332 | 36472828 | ID=Msa1017340-mRNA-1:cds;Parent=Msa1017340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
