AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1017420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1017420 MtrunA17_Chr7g0233151 86.364 176 17 2 76 250 3 172 1.04e-106 305
Msa1017420 MtrunA17_Chr7g0228531 59.310 290 63 4 7 250 152 432 4.64e-105 311
Msa1017420 MtrunA17_Chr7g0228481 59.310 290 63 4 7 250 152 432 6.44e-104 308
Msa1017420 MtrunA17_Chr4g0046171 73.759 141 36 1 111 250 1 141 6.12e-63 193
Msa1017420 MtrunA17_Chr7g0228401 37.061 313 111 6 7 234 186 497 7.11e-48 165
Msa1017420 MtrunA17_Chr1g0177901 53.086 162 56 4 88 234 52 208 1.65e-42 144
Msa1017420 MtrunA17_Chr7g0233161 62.185 119 38 2 7 124 230 342 6.61e-39 138
Msa1017420 MtrunA17_Chr7g0233061 42.601 223 65 9 49 224 152 358 1.24e-32 122
Msa1017420 MtrunA17_Chr3g0117511 32.046 259 89 8 70 247 177 429 5.02e-24 99.8
Msa1017420 MtrunA17_Chr3g0104491 56.000 75 28 2 88 157 25 99 1.35e-22 93.6
Msa1017420 MtrunA17_Chr4g0058991 61.333 75 23 1 76 150 261 329 1.64e-22 95.5
Msa1017420 MtrunA17_Chr5g0429661 56.716 67 27 1 88 152 180 246 3.86e-19 85.1
Msa1017420 MtrunA17_Chr5g0421201 59.677 62 19 1 73 134 9 64 5.24e-18 79.3
Msa1017420 MtrunA17_Chr4g0046181 44.444 108 53 2 18 124 163 264 1.16e-16 77.4
Msa1017420 MtrunA17_Chr4g0008551 65.116 43 15 0 88 130 96 138 1.43e-13 69.3
Msa1017420 MtrunA17_Chr5g0437321 71.053 38 11 0 89 126 78 115 3.49e-12 64.7
Msa1017420 MtrunA17_Chr8g0385321 52.083 48 23 0 87 134 72 119 1.01e-11 63.9
Msa1017420 MtrunA17_Chr1g0157731 45.000 80 35 3 54 130 118 191 3.22e-11 63.2
Msa1017420 MtrunA17_Chr4g0053431 60.465 43 17 0 88 130 63 105 3.81e-11 61.6
Msa1017420 MtrunA17_Chr3g0139671 49.091 55 22 1 76 130 137 185 4.75e-11 62.4
Msa1017420 MtrunA17_Chr4g0037141 51.667 60 25 2 88 146 73 129 9.08e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1017420 AT4G18770.1 68.254 63 20 0 88 150 275 337 1.26e-21 93.2
Msa1017420 AT5G40360.1 42.373 118 60 2 39 154 173 284 7.39e-20 87.8
Msa1017420 AT5G58850.1 40.000 135 63 5 88 205 163 296 1.78e-18 84.3
Msa1017420 AT3G27785.1 59.722 72 23 2 88 154 247 317 2.83e-18 84.0
Msa1017420 AT5G11050.1 68.000 50 16 0 88 137 163 212 5.32e-17 80.1
Msa1017420 AT2G25230.1 68.085 47 15 0 88 134 84 130 5.16e-16 75.1
Msa1017420 AT5G40430.1 38.211 123 68 3 88 203 111 232 1.60e-14 71.6
Msa1017420 AT1G57560.1 31.061 132 86 3 88 216 73 202 3.22e-12 65.5
Msa1017420 AT3G55730.1 53.846 52 24 0 88 139 114 165 5.94e-12 65.1

Find 61 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTGAGCTTTCAAAATT+TGG 0.023881 7_1:+36568232 None:intergenic
GGTTCTTCCTCTTGGCATTT+TGG 0.165983 7_1:+36568371 None:intergenic
GAATCCTCTTCAGCCGCTTT+TGG 0.192256 7_1:+36571984 None:intergenic
CTTTCATGCAATGATGGAAT+TGG 0.295338 7_1:-36572049 Msa1017420:CDS
AATTATGAGTTTGGATCATA+TGG 0.312481 7_1:-36568100 Msa1017420:CDS
AGATCAATTTCTTGCTTAAG+AGG 0.316151 7_1:+36568055 None:intergenic
GGCGTTCCAGTGGTTCTTGA+TGG 0.329167 7_1:+36568405 None:intergenic
TAAGCAAGAAATTGATCTAA+TGG 0.349689 7_1:-36568050 Msa1017420:CDS
ACCACAATGAATTATGAGTT+TGG 0.360754 7_1:-36568109 Msa1017420:CDS
TATGATTTCAGAAGGATTCA+TGG 0.372361 7_1:-36568525 Msa1017420:intron
TCCATTATGTATTTCATAAG+TGG 0.392877 7_1:+36568325 None:intergenic
GTGGTTCTTGATGGAGTTCT+CGG 0.397976 7_1:+36568414 None:intergenic
ACCACTTATGAAATACATAA+TGG 0.411882 7_1:-36568326 Msa1017420:CDS
CTTACCCCGGTTCTTCCTCT+TGG 0.419409 7_1:+36568363 None:intergenic
AAAATGCCAAGAGGAAGAAC+CGG 0.423904 7_1:-36568369 Msa1017420:CDS
TACCCACAAATTTCGTTCTC+TGG 0.427488 7_1:+36568181 None:intergenic
TCTTGCTTAAGAGGAACCTC+AGG 0.432784 7_1:+36568064 None:intergenic
TCATCACCATTGAACATCAT+TGG 0.435028 7_1:+36568154 None:intergenic
ATCGAAGCTCACAAAATAGT+TGG 0.446030 7_1:-36568478 Msa1017420:CDS
TCAATTAATCCTGAGCTTCA+AGG 0.447008 7_1:-36572076 Msa1017420:CDS
GAAAGATCTCCTTGAAGCTC+AGG 0.449302 7_1:+36572067 None:intergenic
GAAATTTCAAGAAGATTGCC+AGG 0.467461 7_1:-36568442 Msa1017420:CDS
GATGGAATGGCAAGTGGATC+TGG 0.471586 7_1:-36568133 Msa1017420:CDS
CAAGGATCTCAATCAAATCA+AGG 0.475188 7_1:-36571939 Msa1017420:CDS
ATGGAGTTCTCGGTGCGCCC+TGG 0.478031 7_1:+36568424 None:intergenic
TGGTGAAACTTCACAACCTC+GGG 0.489214 7_1:-36572149 Msa1017420:intron
TTCCCTTTGAACTCTTACCC+CGG 0.491422 7_1:+36568350 None:intergenic
CAATGCTAAGGAAGTTGAAA+AGG 0.493311 7_1:-36568296 Msa1017420:CDS
CGCCAGAGAACGAAATTTGT+GGG 0.494750 7_1:-36568183 Msa1017420:CDS
GGAGATCTTTCATGCAATGA+TGG 0.500133 7_1:-36572055 Msa1017420:CDS
AAATCCATAGAAAATTATCA+TGG 0.516746 7_1:-36572022 Msa1017420:CDS
ATGATGTTCAATGGTGATGA+TGG 0.528337 7_1:-36568151 Msa1017420:CDS
GTGCCCAAAAGCGGCTGAAG+AGG 0.530335 7_1:-36571988 Msa1017420:CDS
ACAAAATAGTTGGAAACAAG+TGG 0.538861 7_1:-36568468 Msa1017420:CDS
ACGCCAGAGAACGAAATTTG+TGG 0.548833 7_1:-36568184 Msa1017420:CDS
AAATGCCAAGAGGAAGAACC+GGG 0.554441 7_1:-36568368 Msa1017420:CDS
AACCGGGGTAAGAGTTCAAA+GGG 0.562064 7_1:-36568352 Msa1017420:CDS
AATGGAAGTCACCAATGCTA+AGG 0.573363 7_1:-36568308 Msa1017420:CDS
TCAATCAAATCAAGGGACAA+TGG 0.573893 7_1:-36571931 Msa1017420:CDS
GGCGCTTAGTGGCGTTCCAG+TGG 0.575961 7_1:+36568395 None:intergenic
TATGTTCCAATGATGTTCAA+TGG 0.578460 7_1:-36568160 Msa1017420:CDS
AGAACTCCATCAAGAACCAC+TGG 0.579804 7_1:-36568411 Msa1017420:CDS
AGCTAGTGATGGTGATAGAG+AGG 0.585984 7_1:+36572120 None:intergenic
GAACCGGGGTAAGAGTTCAA+AGG 0.590922 7_1:-36568353 Msa1017420:CDS
CTTGCTTAAGAGGAACCTCA+GGG 0.595722 7_1:+36568065 None:intergenic
TCGTGCTCAGTGCCCAAAAG+CGG 0.606665 7_1:-36571997 Msa1017420:CDS
GTTCAATGGTGATGATGGAA+TGG 0.611388 7_1:-36568146 Msa1017420:CDS
AAGGATCTCAATCAAATCAA+GGG 0.611928 7_1:-36571938 Msa1017420:CDS
GGGACAATGGACTTCAAATG+AGG 0.612328 7_1:-36571918 Msa1017420:CDS
ATGGTGAAACTTCACAACCT+CGG 0.620631 7_1:-36572150 Msa1017420:CDS
GCTAGTGATGGTGATAGAGA+GGG 0.625596 7_1:+36572121 None:intergenic
GGTGATGATGGAATGGCAAG+TGG 0.637638 7_1:-36568139 Msa1017420:CDS
AATGGACTTCAAATGAGGAT+CGG 0.644601 7_1:-36571913 Msa1017420:intron
AAATTTCAAGAAGATTGCCA+GGG 0.649002 7_1:-36568441 Msa1017420:CDS
GAATAATGAAATTCAACACA+AGG 0.657330 7_1:-36571957 Msa1017420:CDS
TCCAAACTCATAATTCATTG+TGG 0.657863 7_1:+36568108 None:intergenic
GATGTCGTATTCTACGAGCA+TGG 0.668228 7_1:-36568269 Msa1017420:CDS
AGCGCCGCCAAAATGCCAAG+AGG 0.692200 7_1:-36568378 Msa1017420:CDS
TGTGCATTATAAGCTAGTGA+TGG 0.715719 7_1:+36572109 None:intergenic
ATGCTCGTAGAATACGACAT+CGG 0.744488 7_1:+36568271 None:intergenic
AATGCCAAGAGGAAGAACCG+GGG 0.791379 7_1:-36568367 Msa1017420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATTAAAAAACAGTTA+TGG + chr7_1:36569206-36569225 None:intergenic 10.0%
!!! TTTTTATCATCTTAATATTT+TGG - chr7_1:36569587-36569606 Msa1017420:intron 10.0%
!! AAATAAGAATAAGAAATAAA+AGG - chr7_1:36570062-36570081 Msa1017420:intron 10.0%
!! TTTAATGAATAAAAAAGAAA+GGG + chr7_1:36570414-36570433 None:intergenic 10.0%
!!! TTTTAATGAATAAAAAAGAA+AGG + chr7_1:36570415-36570434 None:intergenic 10.0%
!!! TCTTTATCTATTTTTAATTT+TGG - chr7_1:36570497-36570516 Msa1017420:intron 10.0%
!! ATTCATAAATACTTAATAAA+CGG + chr7_1:36571083-36571102 None:intergenic 10.0%
!! TGTTAATTATATTTAATGTA+AGG + chr7_1:36571604-36571623 None:intergenic 10.0%
!!! AGTAAAATTTGCTTATATTT+AGG + chr7_1:36568385-36568404 None:intergenic 15.0%
!! AATAAAACGAAAACAAATTA+TGG - chr7_1:36568853-36568872 Msa1017420:intron 15.0%
!! TAGTTTAATATTCATTTCAT+TGG - chr7_1:36568963-36568982 Msa1017420:intron 15.0%
!!! TGTTTTTTAATTAATAGTTG+AGG - chr7_1:36569210-36569229 Msa1017420:intron 15.0%
!!! GTTTTTTAATTAATAGTTGA+GGG - chr7_1:36569211-36569230 Msa1017420:intron 15.0%
!!! TTTTTTAATTAATAGTTGAG+GGG - chr7_1:36569212-36569231 Msa1017420:intron 15.0%
!! AAAATGAAAAAAAAATGATG+TGG - chr7_1:36569371-36569390 Msa1017420:intron 15.0%
!!! TTGTTTAAAATCTAATATTG+AGG - chr7_1:36570451-36570470 Msa1017420:intron 15.0%
!!! CAATTTTATATAATCAATGT+AGG + chr7_1:36570605-36570624 None:intergenic 15.0%
!!! TCAAATATTTTATCATACAT+TGG - chr7_1:36571183-36571202 Msa1017420:intron 15.0%
!! ATTTACATAGATTTATTAAG+CGG - chr7_1:36571303-36571322 Msa1017420:intron 15.0%
!!! TTTAACAAGAGATTTTTTAA+GGG - chr7_1:36571332-36571351 Msa1017420:intron 15.0%
!! AAATCCATAGAAAATTATCA+TGG - chr7_1:36568155-36568174 Msa1017420:CDS 20.0%
!!! ATAAGCAAATTTCACTTTTT+AGG + chr7_1:36568478-36568497 None:intergenic 20.0%
!!! AGTGAAATTTGCTTATATTT+AGG - chr7_1:36568482-36568501 Msa1017420:CDS 20.0%
!!! ATGTGTTCATGATTTTATAA+AGG - chr7_1:36568915-36568934 Msa1017420:intron 20.0%
!!! AACATTTTTGAAAATACTGA+TGG - chr7_1:36569116-36569135 Msa1017420:intron 20.0%
!!! TTAGTCTTTATTTTGTGAAA+TGG - chr7_1:36569777-36569796 Msa1017420:intron 20.0%
!! AGTACGAATTGATTATTATT+GGG + chr7_1:36569805-36569824 None:intergenic 20.0%
!! TAGTACGAATTGATTATTAT+TGG + chr7_1:36569806-36569825 None:intergenic 20.0%
!! TAAGAATAAGAAATAAAAGG+TGG - chr7_1:36570065-36570084 Msa1017420:intron 20.0%
!! CTCGAAAAATTGATTAAAAA+AGG + chr7_1:36570319-36570338 None:intergenic 20.0%
!!! ATAGATGAATTTTACACAAA+TGG - chr7_1:36570529-36570548 Msa1017420:intron 20.0%
!! TCTATCAAATACTTACAAAT+TGG + chr7_1:36570706-36570725 None:intergenic 20.0%
!! AATTTGTAAGTATTTGATAG+AGG - chr7_1:36570705-36570724 Msa1017420:intron 20.0%
!! TTTACAAATCAGACATAAAA+GGG + chr7_1:36570797-36570816 None:intergenic 20.0%
!!! TTTTACAAATCAGACATAAA+AGG + chr7_1:36570798-36570817 None:intergenic 20.0%
!! TTAAACTATACTAAATTTGC+AGG - chr7_1:36571235-36571254 Msa1017420:intron 20.0%
!!! TCTATATTTGTCATTTCAAA+TGG + chr7_1:36571283-36571302 None:intergenic 20.0%
!!! CTTTAACAAGAGATTTTTTA+AGG - chr7_1:36571331-36571350 Msa1017420:intron 20.0%
!! TTATGAAATTGTGGTATATA+TGG + chr7_1:36571462-36571481 None:intergenic 20.0%
!! GAATCCATGATAATTTTCTA+TGG + chr7_1:36568162-36568181 None:intergenic 25.0%
! GAATAATGAAATTCAACACA+AGG - chr7_1:36568220-36568239 Msa1017420:CDS 25.0%
!! AATTTGCTTATATTTAGGAC+CGG + chr7_1:36568380-36568399 None:intergenic 25.0%
! CATTCAATTAATGATGTATG+TGG - chr7_1:36568414-36568433 Msa1017420:CDS 25.0%
! CATTCAATTAATGATGTATG+TGG + chr7_1:36568414-36568433 None:intergenic 25.0%
!! AATTTGCTTATATTTAGGAG+CGG - chr7_1:36568487-36568506 Msa1017420:CDS 25.0%
! TTTCATAAACTTAGCAATAC+GGG + chr7_1:36568627-36568646 None:intergenic 25.0%
! CTTTCATAAACTTAGCAATA+CGG + chr7_1:36568628-36568647 None:intergenic 25.0%
! AAGTTTATGAAAGGCTAAAT+TGG - chr7_1:36568635-36568654 Msa1017420:intron 25.0%
! AAAATAGACAACAAAAGTAG+TGG + chr7_1:36569018-36569037 None:intergenic 25.0%
!! CAAATTACTTCTTTGATGAT+AGG + chr7_1:36569076-36569095 None:intergenic 25.0%
! AACAGTTATGGATAAAACTT+AGG + chr7_1:36569194-36569213 None:intergenic 25.0%
!! ATTATTTACCCTTGTTTCTT+AGG - chr7_1:36569235-36569254 Msa1017420:intron 25.0%
! AAAACATACCTAAGAAACAA+GGG + chr7_1:36569246-36569265 None:intergenic 25.0%
! AAAAACATACCTAAGAAACA+AGG + chr7_1:36569247-36569266 None:intergenic 25.0%
! ATGAAAAAAAAATGATGTGG+AGG - chr7_1:36569374-36569393 Msa1017420:intron 25.0%
!! AGGAAAAAAATCACGAATTT+TGG + chr7_1:36569648-36569667 None:intergenic 25.0%
! AATAAGAAATAAAAGGTGGT+GGG - chr7_1:36570069-36570088 Msa1017420:intron 25.0%
! ATGTTTGTAACCATTGTAAA+TGG - chr7_1:36570208-36570227 Msa1017420:intron 25.0%
! ATGAATAAAAAAGAAAGGGA+AGG + chr7_1:36570410-36570429 None:intergenic 25.0%
! CTAACAAAAACATATGTGAA+AGG + chr7_1:36570579-36570598 None:intergenic 25.0%
! GAAAGAGTTAAGTTATAAGA+AGG + chr7_1:36570750-36570769 None:intergenic 25.0%
!!! AAGAGTGTTATTCATACAAT+TGG - chr7_1:36571364-36571383 Msa1017420:intron 25.0%
! TTGGTCTATATGTGTTAAAT+TGG - chr7_1:36571383-36571402 Msa1017420:intron 25.0%
! TTTCTTGCTTTATGAAATTG+TGG + chr7_1:36571471-36571490 None:intergenic 25.0%
! AGAATCAGTCATTACTAAAT+TGG - chr7_1:36571563-36571582 Msa1017420:intron 25.0%
! TTGTTATGTATGATTTCAGA+AGG - chr7_1:36571644-36571663 Msa1017420:intron 25.0%
! ACCACTTATGAAATACATAA+TGG - chr7_1:36571851-36571870 Msa1017420:intron 25.0%
! TCCATTATGTATTTCATAAG+TGG + chr7_1:36571855-36571874 None:intergenic 25.0%
! AATTATGAGTTTGGATCATA+TGG - chr7_1:36572077-36572096 Msa1017420:CDS 25.0%
! TAAGCAAGAAATTGATCTAA+TGG - chr7_1:36572127-36572146 Msa1017420:intron 25.0%
AAGGATCTCAATCAAATCAA+GGG - chr7_1:36568239-36568258 Msa1017420:CDS 30.0%
TTGATTATTATTACTCCCTC+CGG - chr7_1:36568358-36568377 Msa1017420:CDS 30.0%
GATGTATGTGGTTCATATTA+TGG + chr7_1:36568441-36568460 None:intergenic 30.0%
CGTATTGCTAAGTTTATGAA+AGG - chr7_1:36568626-36568645 Msa1017420:intron 30.0%
AAAGAGAAATGGATAATGAC+AGG - chr7_1:36569533-36569552 Msa1017420:intron 30.0%
GAATAAGAAATAAAAGGTGG+TGG - chr7_1:36570068-36570087 Msa1017420:intron 30.0%
GTGTTGAATGAAAAAACCAT+TGG - chr7_1:36570095-36570114 Msa1017420:intron 30.0%
TTAAGAGAGAGAAAATGATG+TGG - chr7_1:36570145-36570164 Msa1017420:intron 30.0%
! AGTGTTGAGAATTGAAAAAG+TGG - chr7_1:36570168-36570187 Msa1017420:intron 30.0%
GTGTTGAGAATTGAAAAAGT+GGG - chr7_1:36570169-36570188 Msa1017420:intron 30.0%
! AGATCTAAGACCATTTACAA+TGG + chr7_1:36570221-36570240 None:intergenic 30.0%
!! TGTTTTTGTCCTTTATTCGA+GGG - chr7_1:36570260-36570279 Msa1017420:intron 30.0%
CATGAGTTTCTTTCACTTAA+TGG - chr7_1:36570644-36570663 Msa1017420:intron 30.0%
ATAAAAGGGAAAGATTGACT+TGG + chr7_1:36570783-36570802 None:intergenic 30.0%
!!! GGAATTATTTTGATAGGAAG+CGG + chr7_1:36570908-36570927 None:intergenic 30.0%
TCCTATCAAAATAATTCCTG+TGG - chr7_1:36570910-36570929 Msa1017420:intron 30.0%
!!! TCCACAGGAATTATTTTGAT+AGG + chr7_1:36570914-36570933 None:intergenic 30.0%
ATGTAATTAGAAACAGAGCA+TGG + chr7_1:36570941-36570960 None:intergenic 30.0%
AGATATTCAACTTCAAGTGT+TGG + chr7_1:36571122-36571141 None:intergenic 30.0%
ATATAAGCCATGTAAGCTTA+TGG - chr7_1:36571142-36571161 Msa1017420:intron 30.0%
GATAGAGAATCATAAACAAG+AGG + chr7_1:36571433-36571452 None:intergenic 30.0%
ATCATACATAACAATGTGTG+TGG + chr7_1:36571638-36571657 None:intergenic 30.0%
TATGATTTCAGAAGGATTCA+TGG - chr7_1:36571652-36571671 Msa1017420:intron 30.0%
ACAAAATAGTTGGAAACAAG+TGG - chr7_1:36571709-36571728 Msa1017420:intron 30.0%
AAATTTCAAGAAGATTGCCA+GGG - chr7_1:36571736-36571755 Msa1017420:intron 30.0%
!!! TGATTTTAGAACTGAAGGTT+TGG - chr7_1:36571968-36571987 Msa1017420:CDS 30.0%
TATGTTCCAATGATGTTCAA+TGG - chr7_1:36572017-36572036 Msa1017420:CDS 30.0%
ACCACAATGAATTATGAGTT+TGG - chr7_1:36572068-36572087 Msa1017420:CDS 30.0%
TCCAAACTCATAATTCATTG+TGG + chr7_1:36572072-36572091 None:intergenic 30.0%
AGATCAATTTCTTGCTTAAG+AGG + chr7_1:36572125-36572144 None:intergenic 30.0%
TGTGCATTATAAGCTAGTGA+TGG + chr7_1:36568071-36568090 None:intergenic 35.0%
TCAATTAATCCTGAGCTTCA+AGG - chr7_1:36568101-36568120 Msa1017420:CDS 35.0%
! CTTTCATGCAATGATGGAAT+TGG - chr7_1:36568128-36568147 Msa1017420:CDS 35.0%
CAAGGATCTCAATCAAATCA+AGG - chr7_1:36568238-36568257 Msa1017420:CDS 35.0%
TCAATCAAATCAAGGGACAA+TGG - chr7_1:36568246-36568265 Msa1017420:CDS 35.0%
! AATGGACTTCAAATGAGGAT+CGG - chr7_1:36568264-36568283 Msa1017420:CDS 35.0%
GGAGGGAGTAATAATAATCA+AGG + chr7_1:36568359-36568378 None:intergenic 35.0%
TAAGGTTCTTGTCCAATTTG+TGG - chr7_1:36568577-36568596 Msa1017420:intron 35.0%
TCCAATTTGTGGATCACTTT+GGG - chr7_1:36568588-36568607 Msa1017420:intron 35.0%
ATCACTTTGGGCTAAGAAAA+TGG - chr7_1:36568600-36568619 Msa1017420:intron 35.0%
AAGAATGAGACCTTAATGTC+TGG + chr7_1:36568698-36568717 None:intergenic 35.0%
TGGTCTAAGGAAATAAAGAG+TGG + chr7_1:36569291-36569310 None:intergenic 35.0%
! TTTTCAACAACCACATGCAA+TGG + chr7_1:36569355-36569374 None:intergenic 35.0%
TTCCTCTATAAATAGAGACG+TGG - chr7_1:36569663-36569682 Msa1017420:intron 35.0%
ATCCACGTCTCTATTTATAG+AGG + chr7_1:36569668-36569687 None:intergenic 35.0%
GAATGAAAAAACCATTGGAG+AGG - chr7_1:36570100-36570119 Msa1017420:intron 35.0%
! TTCAACTTTTACCTCTCCAA+TGG + chr7_1:36570114-36570133 None:intergenic 35.0%
TTGGAGAGGTAAAAGTTGAA+TGG - chr7_1:36570114-36570133 Msa1017420:intron 35.0%
TGGAGAGGTAAAAGTTGAAT+GGG - chr7_1:36570115-36570134 Msa1017420:intron 35.0%
!! ATTGAAAAAGTGGGTGTTGA+AGG - chr7_1:36570178-36570197 Msa1017420:intron 35.0%
!!! CTGTTTTTGTCCTTTATTCG+AGG - chr7_1:36570259-36570278 Msa1017420:intron 35.0%
! GTTTTTGTCCTTTATTCGAG+GGG - chr7_1:36570261-36570280 Msa1017420:intron 35.0%
! AGGAAAAGAGTGTACAAGAA+GGG + chr7_1:36570299-36570318 None:intergenic 35.0%
! AAGGAAAAGAGTGTACAAGA+AGG + chr7_1:36570300-36570319 None:intergenic 35.0%
!!! ATTTTTCGAGCACGTGATAT+AGG - chr7_1:36570329-36570348 Msa1017420:intron 35.0%
AGAGGTGAAAATTTGAACTC+AGG - chr7_1:36570723-36570742 Msa1017420:intron 35.0%
!!! CCAATTTTTTGTTCTCCTCA+CGG - chr7_1:36571492-36571511 Msa1017420:intron 35.0%
ATAGCATGTATTTGTTCCCA+CGG + chr7_1:36571523-36571542 None:intergenic 35.0%
ATCGAAGCTCACAAAATAGT+TGG - chr7_1:36571699-36571718 Msa1017420:intron 35.0%
GAAATTTCAAGAAGATTGCC+AGG - chr7_1:36571735-36571754 Msa1017420:intron 35.0%
! CTTTTCAACTTCCTTAGCAT+TGG + chr7_1:36571883-36571902 None:intergenic 35.0%
CAATGCTAAGGAAGTTGAAA+AGG - chr7_1:36571881-36571900 Msa1017420:intron 35.0%
CTCTCTGAGCTTTCAAAATT+TGG + chr7_1:36571948-36571967 None:intergenic 35.0%
!!! GAGAGTGATTTTAGAACTGA+AGG - chr7_1:36571963-36571982 Msa1017420:CDS 35.0%
TCATCACCATTGAACATCAT+TGG + chr7_1:36572026-36572045 None:intergenic 35.0%
! ATGATGTTCAATGGTGATGA+TGG - chr7_1:36572026-36572045 Msa1017420:CDS 35.0%
ATGGTGAAACTTCACAACCT+CGG - chr7_1:36568027-36568046 Msa1017420:CDS 40.0%
GGAGATCTTTCATGCAATGA+TGG - chr7_1:36568122-36568141 Msa1017420:CDS 40.0%
! TGCTTATATTTAGGACCGGA+GGG + chr7_1:36568376-36568395 None:intergenic 40.0%
! TTGCTTATATTTAGGACCGG+AGG + chr7_1:36568377-36568396 None:intergenic 40.0%
TTGCTTATATTTAGGAGCGG+AGG - chr7_1:36568490-36568509 Msa1017420:CDS 40.0%
TGCTTATATTTAGGAGCGGA+GGG - chr7_1:36568491-36568510 Msa1017420:CDS 40.0%
GTCCAATTTGTGGATCACTT+TGG - chr7_1:36568587-36568606 Msa1017420:intron 40.0%
CCTTAATGTCTGGTCAAAGA+TGG + chr7_1:36568688-36568707 None:intergenic 40.0%
CCATCTTTGACCAGACATTA+AGG - chr7_1:36568685-36568704 Msa1017420:intron 40.0%
TTTCCTTAGACCAAGTGCAA+TGG - chr7_1:36569298-36569317 Msa1017420:intron 40.0%
TTCCTTAGACCAAGTGCAAT+GGG - chr7_1:36569299-36569318 Msa1017420:intron 40.0%
TTTCAACTACCCATTGCACT+TGG + chr7_1:36569311-36569330 None:intergenic 40.0%
GGTTTCAACATGTTGAAGCT+TGG + chr7_1:36569334-36569353 None:intergenic 40.0%
CATGTTGAAACCATTGCATG+TGG - chr7_1:36569342-36569361 Msa1017420:intron 40.0%
AAAAATGATGTGGAGGTGAG+AGG - chr7_1:36569381-36569400 Msa1017420:intron 40.0%
ATGTTGAAATCTGACACGCA+GGG - chr7_1:36569421-36569440 Msa1017420:intron 40.0%
GCCTTTGAATTTGCAAAAGC+AGG - chr7_1:36569454-36569473 Msa1017420:intron 40.0%
!! GCCTGCTTTTGCAAATTCAA+AGG + chr7_1:36569458-36569477 None:intergenic 40.0%
ATGGATAATGACAGGACACA+TGG - chr7_1:36569541-36569560 Msa1017420:intron 40.0%
GAGACGTGGATCATTAGATT+TGG - chr7_1:36569677-36569696 Msa1017420:intron 40.0%
AAACCAAACCCCTCGAATAA+AGG + chr7_1:36570272-36570291 None:intergenic 40.0%
! TTTATTCGAGGGGTTTGGTT+TGG - chr7_1:36570271-36570290 Msa1017420:intron 40.0%
! GGAAAAGAGTGTACAAGAAG+GGG + chr7_1:36570298-36570317 None:intergenic 40.0%
ATATAGGATGGGGGTTGTTA+TGG - chr7_1:36570345-36570364 Msa1017420:intron 40.0%
!! AAAGAAAGGGAAGGCATCAA+GGG + chr7_1:36570401-36570420 None:intergenic 40.0%
!! AAAAGAAAGGGAAGGCATCA+AGG + chr7_1:36570402-36570421 None:intergenic 40.0%
!! AAAGGGAAAGATTGACTTGG+TGG + chr7_1:36570780-36570799 None:intergenic 40.0%
TGATCGACCATAAGCTTACA+TGG + chr7_1:36571152-36571171 None:intergenic 40.0%
CCGTGAGGAGAACAAAAAAT+TGG + chr7_1:36571495-36571514 None:intergenic 40.0%
AAAATGCCAAGAGGAAGAAC+CGG - chr7_1:36571808-36571827 Msa1017420:intron 40.0%
AATGGAAGTCACCAATGCTA+AGG - chr7_1:36571869-36571888 Msa1017420:intron 40.0%
ATGCTCGTAGAATACGACAT+CGG + chr7_1:36571909-36571928 None:intergenic 40.0%
TACCCACAAATTTCGTTCTC+TGG + chr7_1:36571999-36572018 None:intergenic 40.0%
!! GTTCAATGGTGATGATGGAA+TGG - chr7_1:36572031-36572050 Msa1017420:CDS 40.0%
! TGGAATAGAGTTTTTCCCTG+AGG - chr7_1:36572097-36572116 Msa1017420:CDS 40.0%
TGGTGAAACTTCACAACCTC+GGG - chr7_1:36568028-36568047 Msa1017420:CDS 45.0%
! GCTAGTGATGGTGATAGAGA+GGG + chr7_1:36568059-36568078 None:intergenic 45.0%
! AGCTAGTGATGGTGATAGAG+AGG + chr7_1:36568060-36568079 None:intergenic 45.0%
GAAAGATCTCCTTGAAGCTC+AGG + chr7_1:36568113-36568132 None:intergenic 45.0%
!!! AATCCTCTTCAGCCGCTTTT+GGG + chr7_1:36568195-36568214 None:intergenic 45.0%
! GGGACAATGGACTTCAAATG+AGG - chr7_1:36568259-36568278 Msa1017420:CDS 45.0%
GCCCAAAGTGATCCACAAAT+TGG + chr7_1:36568592-36568611 None:intergenic 45.0%
GAAAACAGTGCAGAGAGAGA+TGG - chr7_1:36568657-36568676 Msa1017420:intron 45.0%
TACCCATTGCACTTGGTCTA+AGG + chr7_1:36569304-36569323 None:intergenic 45.0%
CATGTTGAAATCTGACACGC+AGG - chr7_1:36569420-36569439 Msa1017420:intron 45.0%
TGTTGAAATCTGACACGCAG+GGG - chr7_1:36569422-36569441 Msa1017420:intron 45.0%
TGTCCTTTATTCGAGGGGTT+TGG - chr7_1:36570266-36570285 Msa1017420:intron 45.0%
TTCGAGCACGTGATATAGGA+TGG - chr7_1:36570333-36570352 Msa1017420:intron 45.0%
TCGAGCACGTGATATAGGAT+GGG - chr7_1:36570334-36570353 Msa1017420:intron 45.0%
! GTTGTTATGGAGTGCCAACT+TGG - chr7_1:36570358-36570377 Msa1017420:intron 45.0%
! TTATGGAGTGCCAACTTGGT+TGG - chr7_1:36570362-36570381 Msa1017420:intron 45.0%
! TATGGAGTGCCAACTTGGTT+GGG - chr7_1:36570363-36570382 Msa1017420:intron 45.0%
!! AAGAAAGGGAAGGCATCAAG+GGG + chr7_1:36570400-36570419 None:intergenic 45.0%
!! AAAGATTGACTTGGTGGCTG+AGG + chr7_1:36570774-36570793 None:intergenic 45.0%
ACAGAGCATGGTTATTCCAC+AGG + chr7_1:36570929-36570948 None:intergenic 45.0%
GAAGGATTCATGGTCTGAAG+AGG - chr7_1:36571662-36571681 Msa1017420:intron 45.0%
GTGGTTCTTGATGGAGTTCT+CGG + chr7_1:36571766-36571785 None:intergenic 45.0%
AGAACTCCATCAAGAACCAC+TGG - chr7_1:36571766-36571785 Msa1017420:intron 45.0%
! TCTTCCTCTTGGCATTTTGG+CGG + chr7_1:36571806-36571825 None:intergenic 45.0%
! GGTTCTTCCTCTTGGCATTT+TGG + chr7_1:36571809-36571828 None:intergenic 45.0%
AAATGCCAAGAGGAAGAACC+GGG - chr7_1:36571809-36571828 Msa1017420:intron 45.0%
AACCGGGGTAAGAGTTCAAA+GGG - chr7_1:36571825-36571844 Msa1017420:intron 45.0%
TTCCCTTTGAACTCTTACCC+CGG + chr7_1:36571830-36571849 None:intergenic 45.0%
GATGTCGTATTCTACGAGCA+TGG - chr7_1:36571908-36571927 Msa1017420:intron 45.0%
ACGCCAGAGAACGAAATTTG+TGG - chr7_1:36571993-36572012 Msa1017420:CDS 45.0%
CGCCAGAGAACGAAATTTGT+GGG - chr7_1:36571994-36572013 Msa1017420:CDS 45.0%
CTTGCTTAAGAGGAACCTCA+GGG + chr7_1:36572115-36572134 None:intergenic 45.0%
TCTTGCTTAAGAGGAACCTC+AGG + chr7_1:36572116-36572135 None:intergenic 45.0%
!!! AATTATTTTATATTTTTGTA+AGG - chr7_1:36568559-36568578 Msa1017420:intron 5.0%
!! GAATCCTCTTCAGCCGCTTT+TGG + chr7_1:36568196-36568215 None:intergenic 50.0%
GTGACATACACGCGTAGACA+AGG - chr7_1:36569480-36569499 Msa1017420:intron 50.0%
GGCGGAGAGAGAAAGAGAAA+TGG - chr7_1:36569522-36569541 Msa1017420:intron 50.0%
CGAGCACGTGATATAGGATG+GGG - chr7_1:36570335-36570354 Msa1017420:intron 50.0%
GAGCACGTGATATAGGATGG+GGG - chr7_1:36570336-36570355 Msa1017420:intron 50.0%
ACTAGGCATCCCAACCAAGT+TGG + chr7_1:36570375-36570394 None:intergenic 50.0%
GGATTCATGGTCTGAAGAGG+AGG - chr7_1:36571665-36571684 Msa1017420:intron 50.0%
AATGCCAAGAGGAAGAACCG+GGG - chr7_1:36571810-36571829 Msa1017420:intron 50.0%
GAACCGGGGTAAGAGTTCAA+AGG - chr7_1:36571824-36571843 Msa1017420:intron 50.0%
!! GGTGATGATGGAATGGCAAG+TGG - chr7_1:36572038-36572057 Msa1017420:CDS 50.0%
GATGGAATGGCAAGTGGATC+TGG - chr7_1:36572044-36572063 Msa1017420:CDS 50.0%
GATAGAGAGGGACTTACCCG+AGG + chr7_1:36568047-36568066 None:intergenic 55.0%
TCGTGCTCAGTGCCCAAAAG+CGG - chr7_1:36568180-36568199 Msa1017420:CDS 55.0%
GACACATGGCGCGTTTCGAT+TGG - chr7_1:36569555-36569574 Msa1017420:intron 55.0%
!! GAAGGCATCAAGGGGCAACT+AGG + chr7_1:36570392-36570411 None:intergenic 55.0%
GGCGTTCCAGTGGTTCTTGA+TGG + chr7_1:36571775-36571794 None:intergenic 55.0%
CTTACCCCGGTTCTTCCTCT+TGG + chr7_1:36571817-36571836 None:intergenic 55.0%
GTGCCCAAAAGCGGCTGAAG+AGG - chr7_1:36568189-36568208 Msa1017420:CDS 60.0%
! GCGCGTTTCGATTGGCTGCT+TGG - chr7_1:36569563-36569582 Msa1017420:intron 60.0%
!! TTCTCCTCACGGTGCTACCG+TGG - chr7_1:36571503-36571522 Msa1017420:intron 60.0%
!! TCTCCTCACGGTGCTACCGT+GGG - chr7_1:36571504-36571523 Msa1017420:intron 60.0%
!! GGCATTTTGGCGGCGCTTAG+TGG + chr7_1:36571796-36571815 None:intergenic 60.0%
AGCGCCGCCAAAATGCCAAG+AGG - chr7_1:36571799-36571818 Msa1017420:intron 60.0%
TCTGACACGCAGGGGACACG+TGG - chr7_1:36569430-36569449 Msa1017420:intron 65.0%
GCGTAGACAAGGCGCGTGAG+CGG - chr7_1:36569491-36569510 Msa1017420:intron 65.0%
GTTCCCACGGTAGCACCGTG+AGG + chr7_1:36571510-36571529 None:intergenic 65.0%
! ATGGAGTTCTCGGTGCGCCC+TGG + chr7_1:36571756-36571775 None:intergenic 65.0%
GGCGCTTAGTGGCGTTCCAG+TGG + chr7_1:36571785-36571804 None:intergenic 65.0%
GACAAGGCGCGTGAGCGGTC+TGG - chr7_1:36569496-36569515 Msa1017420:intron 70.0%
! GCGTGAGCGGTCTGGAGTGG+CGG - chr7_1:36569504-36569523 Msa1017420:intron 70.0%
GGCGCGTGAGCGGTCTGGAG+TGG - chr7_1:36569501-36569520 Msa1017420:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 36568027 36572172 36568027 ID=Msa1017420;Name=Msa1017420
chr7_1 mRNA 36568027 36572172 36568027 ID=Msa1017420-mRNA-1;Parent=Msa1017420;Name=Msa1017420-mRNA-1;_AED=0.22;_eAED=0.26;_QI=0|0|0|1|0|0|4|0|250
chr7_1 exon 36572150 36572172 36572150 ID=Msa1017420-mRNA-1:exon:6916;Parent=Msa1017420-mRNA-1
chr7_1 exon 36571914 36572144 36571914 ID=Msa1017420-mRNA-1:exon:6915;Parent=Msa1017420-mRNA-1
chr7_1 exon 36568526 36568533 36568526 ID=Msa1017420-mRNA-1:exon:6914;Parent=Msa1017420-mRNA-1
chr7_1 exon 36568027 36568517 36568027 ID=Msa1017420-mRNA-1:exon:6913;Parent=Msa1017420-mRNA-1
chr7_1 CDS 36572150 36572172 36572150 ID=Msa1017420-mRNA-1:cds;Parent=Msa1017420-mRNA-1
chr7_1 CDS 36571914 36572144 36571914 ID=Msa1017420-mRNA-1:cds;Parent=Msa1017420-mRNA-1
chr7_1 CDS 36568526 36568533 36568526 ID=Msa1017420-mRNA-1:cds;Parent=Msa1017420-mRNA-1
chr7_1 CDS 36568027 36568517 36568027 ID=Msa1017420-mRNA-1:cds;Parent=Msa1017420-mRNA-1
Gene Sequence

>Msa1017420

ATGGTGAAACTTCACAACCTCGGTCCCTCTCTATCACCATCACTAGCTTATAATGCACATCAATCTGTGTCAATTAATCCTGAGCTTCAAGGAGATCTTTCATGCAATGATGGAATTGGAAACAAATCCATAGAAAATTATCATGGATTCGTGCTCAGTGCCCAAAAGCGGCTGAAGAGGATTCAAAAGAATAATGAAATTCAACACAAGGATCTCAATCAAATCAAGGGACAATGGACTTCAAATGAGGATCGGATTCATGAGGAGGACAAAATACTAATCGAAGCTCACAAAATAGTTGGAAACAAGTGGACTGAAATTTCAAGAAGATTGCCAGGGCGCACCGAGAACTCCATCAAGAACCACTGGAACGCCACTAAGCGCCGCCAAAATGCCAAGAGGAAGAACCGGGGTAAGAGTTCAAAGGGAAGACCACTTATGAAATACATAATGGAAGTCACCAATGCTAAGGAAGTTGAAAAGGAGCCGATGTCGTATTCTACGAGCATGGATATTAGAAATCAACCAAATTTTGAAAGCTCAGAGAGTGATTTTAGAACTGAAGGTTTGGCTACGCCAGAGAACGAAATTTGTGGGTATGTTCCAATGATGTTCAATGGTGATGATGGAATGGCAAGTGGATCTGGTACCACAATGAATTATGAGTTTGGATCATATGGAATAGAGTTTTTCCCTGAGGTTCCTCTTAAGCAAGAAATTGATCTAATGGAGATGATCTATAAAAACCCTTAA

Protein sequence

>Msa1017420

MVKLHNLGPSLSPSLAYNAHQSVSINPELQGDLSCNDGIGNKSIENYHGFVLSAQKRLKRIQKNNEIQHKDLNQIKGQWTSNEDRIHEEDKILIEAHKIVGNKWTEISRRLPGRTENSIKNHWNATKRRQNAKRKNRGKSSKGRPLMKYIMEVTNAKEVEKEPMSYSTSMDIRNQPNFESSESDFRTEGLATPENEICGYVPMMFNGDDGMASGSGTTMNYEFGSYGIEFFPEVPLKQEIDLMEMIYKNP*