Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017910 | AES78884.2 | 79.630 | 216 | 36 | 2 | 1 | 208 | 82 | 297 | 7.52e-116 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017910 | sp|Q8S2E6|Y1235_ORYSJ | 31.690 | 142 | 83 | 4 | 55 | 191 | 247 | 379 | 1.50e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017910 | G7KVV7 | 79.630 | 216 | 36 | 2 | 1 | 208 | 82 | 297 | 3.59e-116 | 342 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1017910 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017910 | MtrunA17_Chr7g0233541 | 79.630 | 216 | 36 | 2 | 1 | 208 | 82 | 297 | 6.92e-120 | 342 |
| Msa1017910 | MtrunA17_Chr7g0233521 | 69.378 | 209 | 53 | 4 | 1 | 208 | 82 | 280 | 5.94e-98 | 285 |
| Msa1017910 | MtrunA17_Chr7g0233531 | 66.351 | 211 | 52 | 3 | 3 | 208 | 84 | 280 | 3.63e-89 | 263 |
| Msa1017910 | MtrunA17_Chr7g0233561 | 62.212 | 217 | 72 | 5 | 1 | 208 | 114 | 329 | 9.54e-85 | 254 |
| Msa1017910 | MtrunA17_Chr3g0131891 | 62.617 | 214 | 66 | 5 | 1 | 208 | 115 | 320 | 1.14e-82 | 248 |
| Msa1017910 | MtrunA17_Chr7g0233571 | 52.252 | 111 | 44 | 3 | 1 | 102 | 106 | 216 | 1.25e-29 | 109 |
| Msa1017910 | MtrunA17_Chr1g0163071 | 42.342 | 111 | 53 | 4 | 81 | 191 | 188 | 287 | 3.20e-19 | 84.0 |
| Msa1017910 | MtrunA17_Chr1g0208771 | 36.364 | 121 | 64 | 4 | 72 | 191 | 182 | 290 | 3.02e-18 | 82.0 |
| Msa1017910 | MtrunA17_Chr8g0390841 | 34.239 | 184 | 92 | 8 | 23 | 191 | 162 | 331 | 5.00e-16 | 75.9 |
| Msa1017910 | MtrunA17_Chr4g0033961 | 31.148 | 122 | 78 | 2 | 74 | 195 | 277 | 392 | 3.51e-12 | 64.7 |
| Msa1017910 | MtrunA17_Chr1g0162441 | 29.134 | 127 | 84 | 2 | 65 | 191 | 272 | 392 | 1.08e-11 | 63.2 |
| Msa1017910 | MtrunA17_Chr1g0163111 | 35.593 | 118 | 69 | 4 | 79 | 194 | 2 | 114 | 3.11e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017910 | AT1G49480.3 | 30.000 | 170 | 102 | 6 | 23 | 191 | 68 | 221 | 8.74e-13 | 65.5 |
| Msa1017910 | AT1G49480.1 | 30.000 | 170 | 102 | 6 | 23 | 191 | 68 | 221 | 8.74e-13 | 65.5 |
| Msa1017910 | AT1G49480.2 | 30.000 | 170 | 102 | 6 | 23 | 191 | 68 | 221 | 8.74e-13 | 65.5 |
Find 30 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATCAACCACGTGAAAT+TGG | 0.219339 | 7_1:-37640926 | Msa1017910:CDS |
| GGACTAAAATTTCAACTTAC+AGG | 0.245796 | 7_1:-37639916 | Msa1017910:CDS |
| AGGTGTTAAATGAAGGAGTT+TGG | 0.351103 | 7_1:-37639972 | Msa1017910:CDS |
| TGGTAATAGACACTTTGATT+TGG | 0.391800 | 7_1:-37640022 | Msa1017910:CDS |
| CAGAATATACCACGTTCGTT+TGG | 0.431161 | 7_1:-37640042 | Msa1017910:CDS |
| CATTTGCAGAGGAAAATAAC+TGG | 0.453695 | 7_1:-37639882 | Msa1017910:CDS |
| ACTTTGAGATGAAGAACAAT+TGG | 0.461943 | 7_1:+37639768 | None:intergenic |
| ATTGTTCTTCATCTCAAAGT+AGG | 0.462207 | 7_1:-37639765 | Msa1017910:CDS |
| CAAGGAAATAAACGTTCAAA+TGG | 0.463400 | 7_1:-37640995 | Msa1017910:CDS |
| GAGGAAAATAACTGGAAAGT+TGG | 0.482016 | 7_1:-37639874 | Msa1017910:CDS |
| TCTATCAAGAAGTGCAGTAA+AGG | 0.491677 | 7_1:-37639937 | Msa1017910:CDS |
| TTTGATTTGGATAAGAAAAG+AGG | 0.493087 | 7_1:-37640009 | Msa1017910:CDS |
| ACGTTTATTTCCTTGACCAT+TGG | 0.495512 | 7_1:+37641003 | None:intergenic |
| CAACGAGTTTCCAATGGTCA+AGG | 0.497922 | 7_1:-37641013 | Msa1017910:CDS |
| CTTGACCATTGGAAACTCGT+TGG | 0.499234 | 7_1:+37641014 | None:intergenic |
| CATTGGAAACTCGTTGGAAA+GGG | 0.505311 | 7_1:+37641020 | None:intergenic |
| ATGAAGGAGTTTGGACTGCA+AGG | 0.527571 | 7_1:-37639963 | Msa1017910:CDS |
| AATTTCAACTTACAGGTGGA+TGG | 0.530556 | 7_1:-37639909 | Msa1017910:CDS |
| CCATTGGAAACTCGTTGGAA+AGG | 0.533786 | 7_1:+37641019 | None:intergenic |
| CGCATGACAACAACAAAGGA+TGG | 0.548509 | 7_1:+37640658 | None:intergenic |
| ACGTGGTTGATGAAGTTCAA+AGG | 0.562344 | 7_1:+37640934 | None:intergenic |
| TCAACTTACAGGTGGATGGA+AGG | 0.567817 | 7_1:-37639905 | Msa1017910:CDS |
| CCTTTCCAACGAGTTTCCAA+TGG | 0.571854 | 7_1:-37641019 | Msa1017910:CDS |
| CTAAAATTTCAACTTACAGG+TGG | 0.580366 | 7_1:-37639913 | Msa1017910:CDS |
| TAGAGTTGGAAAACTGCAGA+AGG | 0.585587 | 7_1:-37640888 | Msa1017910:CDS |
| CTACTGCTTCCAATTTCACG+TGG | 0.605958 | 7_1:+37640917 | None:intergenic |
| TGGATGGAAGGCATTTGCAG+AGG | 0.673309 | 7_1:-37639893 | Msa1017910:CDS |
| TGCACGCATGACAACAACAA+AGG | 0.693553 | 7_1:+37640654 | None:intergenic |
| CATACTGATAGAGAGTCCAA+AGG | 0.706864 | 7_1:-37640851 | Msa1017910:intron |
| TGTCTATTACCAAACGAACG+TGG | 0.725731 | 7_1:+37640033 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATATTCTAATTATCCT+TGG | + | chr7_1:37640311-37640330 | None:intergenic | 15.0% |
| !! | AATTATATTCTAATTATCCT+TGG | + | chr7_1:37640311-37640330 | None:intergenic | 15.0% |
| !! | TTAAGTTTCAATGACATATT+TGG | - | chr7_1:37640184-37640203 | Msa1017910:intron | 20.0% |
| !!! | AGTTACTTGATTATTTTGTT+AGG | - | chr7_1:37640354-37640373 | Msa1017910:intron | 20.0% |
| !!! | TGTTGTTATTTTGTTTATTC+TGG | - | chr7_1:37640391-37640410 | Msa1017910:intron | 20.0% |
| !! | AAATGTGTATTAATCAAGAT+CGG | + | chr7_1:37640494-37640513 | None:intergenic | 20.0% |
| !! | TTAAGTTTCAATGACATATT+TGG | - | chr7_1:37640184-37640203 | Msa1017910:intron | 20.0% |
| !!! | AGTTACTTGATTATTTTGTT+AGG | - | chr7_1:37640354-37640373 | Msa1017910:intron | 20.0% |
| !!! | TGTTGTTATTTTGTTTATTC+TGG | - | chr7_1:37640391-37640410 | Msa1017910:intron | 20.0% |
| !! | AAATGTGTATTAATCAAGAT+CGG | + | chr7_1:37640494-37640513 | None:intergenic | 20.0% |
| !! | TATTTTGTTAGGTGATTGAT+AGG | - | chr7_1:37640365-37640384 | Msa1017910:intron | 25.0% |
| ! | TAAAAAATCGAAAGTTCTTG+TGG | + | chr7_1:37640691-37640710 | None:intergenic | 25.0% |
| !! | CATTTGTCTTTTCTTTTACT+TGG | - | chr7_1:37640719-37640738 | Msa1017910:CDS | 25.0% |
| !!! | TTTGATTTGGATAAGAAAAG+AGG | - | chr7_1:37640775-37640794 | Msa1017910:intron | 25.0% |
| !! | TATTTTGTTAGGTGATTGAT+AGG | - | chr7_1:37640365-37640384 | Msa1017910:intron | 25.0% |
| ! | TAAAAAATCGAAAGTTCTTG+TGG | + | chr7_1:37640691-37640710 | None:intergenic | 25.0% |
| !! | CATTTGTCTTTTCTTTTACT+TGG | - | chr7_1:37640719-37640738 | Msa1017910:CDS | 25.0% |
| !!! | TTTGATTTGGATAAGAAAAG+AGG | - | chr7_1:37640775-37640794 | Msa1017910:intron | 25.0% |
| CAAGGAAATAAACGTTCAAA+TGG | - | chr7_1:37639789-37639808 | Msa1017910:CDS | 30.0% | |
| TGCAAAATTGGAACACAATA+AGG | + | chr7_1:37640037-37640056 | None:intergenic | 30.0% | |
| ! | TTATTGTGTTCCAATTTTGC+AGG | - | chr7_1:37640036-37640055 | Msa1017910:CDS | 30.0% |
| ! | TATTGTGTTCCAATTTTGCA+GGG | - | chr7_1:37640037-37640056 | Msa1017910:CDS | 30.0% |
| AATCTAGTAAAGAGTAGAGA+AGG | + | chr7_1:37640232-37640251 | None:intergenic | 30.0% | |
| CTCTACTCTTTACTAGATTA+CGG | - | chr7_1:37640233-37640252 | Msa1017910:intron | 30.0% | |
| AAGTATTTGAATAACGCTTG+AGG | - | chr7_1:37640416-37640435 | Msa1017910:intron | 30.0% | |
| AGTATTTGAATAACGCTTGA+GGG | - | chr7_1:37640417-37640436 | Msa1017910:intron | 30.0% | |
| TATCTAATCATGATGTCACT+TGG | + | chr7_1:37640602-37640621 | None:intergenic | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | chr7_1:37640762-37640781 | Msa1017910:intron | 30.0% | |
| ! | AAGAGGAGATATTCATTTTC+AGG | - | chr7_1:37640792-37640811 | Msa1017910:intron | 30.0% |
| !!! | CATTTTCAGGTGTTAAATGA+AGG | - | chr7_1:37640805-37640824 | Msa1017910:intron | 30.0% |
| GGACTAAAATTTCAACTTAC+AGG | - | chr7_1:37640868-37640887 | Msa1017910:CDS | 30.0% | |
| CTAAAATTTCAACTTACAGG+TGG | - | chr7_1:37640871-37640890 | Msa1017910:CDS | 30.0% | |
| !! | ACTTTGAGATGAAGAACAAT+TGG | + | chr7_1:37641019-37641038 | None:intergenic | 30.0% |
| ATTGTTCTTCATCTCAAAGT+AGG | - | chr7_1:37641019-37641038 | Msa1017910:CDS | 30.0% | |
| CAAGGAAATAAACGTTCAAA+TGG | - | chr7_1:37639789-37639808 | Msa1017910:CDS | 30.0% | |
| TGCAAAATTGGAACACAATA+AGG | + | chr7_1:37640037-37640056 | None:intergenic | 30.0% | |
| ! | TTATTGTGTTCCAATTTTGC+AGG | - | chr7_1:37640036-37640055 | Msa1017910:CDS | 30.0% |
| ! | TATTGTGTTCCAATTTTGCA+GGG | - | chr7_1:37640037-37640056 | Msa1017910:CDS | 30.0% |
| AATCTAGTAAAGAGTAGAGA+AGG | + | chr7_1:37640232-37640251 | None:intergenic | 30.0% | |
| CTCTACTCTTTACTAGATTA+CGG | - | chr7_1:37640233-37640252 | Msa1017910:intron | 30.0% | |
| AAGTATTTGAATAACGCTTG+AGG | - | chr7_1:37640416-37640435 | Msa1017910:intron | 30.0% | |
| AGTATTTGAATAACGCTTGA+GGG | - | chr7_1:37640417-37640436 | Msa1017910:intron | 30.0% | |
| TATCTAATCATGATGTCACT+TGG | + | chr7_1:37640602-37640621 | None:intergenic | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | chr7_1:37640762-37640781 | Msa1017910:intron | 30.0% | |
| ! | AAGAGGAGATATTCATTTTC+AGG | - | chr7_1:37640792-37640811 | Msa1017910:intron | 30.0% |
| !!! | CATTTTCAGGTGTTAAATGA+AGG | - | chr7_1:37640805-37640824 | Msa1017910:intron | 30.0% |
| GGACTAAAATTTCAACTTAC+AGG | - | chr7_1:37640868-37640887 | Msa1017910:CDS | 30.0% | |
| CTAAAATTTCAACTTACAGG+TGG | - | chr7_1:37640871-37640890 | Msa1017910:CDS | 30.0% | |
| !! | ACTTTGAGATGAAGAACAAT+TGG | + | chr7_1:37641019-37641038 | None:intergenic | 30.0% |
| ATTGTTCTTCATCTCAAAGT+AGG | - | chr7_1:37641019-37641038 | Msa1017910:CDS | 30.0% | |
| ACGTTTATTTCCTTGACCAT+TGG | + | chr7_1:37639784-37639803 | None:intergenic | 35.0% | |
| !!! | AGCAGTAGTTGTTTTAGAGT+TGG | - | chr7_1:37639882-37639901 | Msa1017910:CDS | 35.0% |
| ! | AGTCCAAAGGTATAAGATTG+TGG | - | chr7_1:37639946-37639965 | Msa1017910:CDS | 35.0% |
| AAGCCACAATCTTATACCTT+TGG | + | chr7_1:37639952-37639971 | None:intergenic | 35.0% | |
| ! | CGTTGAACATCATTTTCTAC+TGG | - | chr7_1:37640158-37640177 | Msa1017910:intron | 35.0% |
| GTAAAGAGTAGAGAAGGATT+TGG | + | chr7_1:37640226-37640245 | None:intergenic | 35.0% | |
| CAAAAACTATGTATGCACCA+AGG | - | chr7_1:37640291-37640310 | Msa1017910:intron | 35.0% | |
| GTATTTGAATAACGCTTGAG+GGG | - | chr7_1:37640418-37640437 | Msa1017910:intron | 35.0% | |
| ATCTTTCCATTGATACCAAC+TGG | - | chr7_1:37640534-37640553 | Msa1017910:intron | 35.0% | |
| ! | TAATCATGATGTCACTTGGT+AGG | + | chr7_1:37640598-37640617 | None:intergenic | 35.0% |
| AGGTGTTAAATGAAGGAGTT+TGG | - | chr7_1:37640812-37640831 | Msa1017910:intron | 35.0% | |
| ! | TCTATCAAGAAGTGCAGTAA+AGG | - | chr7_1:37640847-37640866 | Msa1017910:intron | 35.0% |
| AATTTCAACTTACAGGTGGA+TGG | - | chr7_1:37640875-37640894 | Msa1017910:CDS | 35.0% | |
| CATTTGCAGAGGAAAATAAC+TGG | - | chr7_1:37640902-37640921 | Msa1017910:CDS | 35.0% | |
| GAGGAAAATAACTGGAAAGT+TGG | - | chr7_1:37640910-37640929 | Msa1017910:CDS | 35.0% | |
| ACGTTTATTTCCTTGACCAT+TGG | + | chr7_1:37639784-37639803 | None:intergenic | 35.0% | |
| !!! | AGCAGTAGTTGTTTTAGAGT+TGG | - | chr7_1:37639882-37639901 | Msa1017910:CDS | 35.0% |
| ! | AGTCCAAAGGTATAAGATTG+TGG | - | chr7_1:37639946-37639965 | Msa1017910:CDS | 35.0% |
| AAGCCACAATCTTATACCTT+TGG | + | chr7_1:37639952-37639971 | None:intergenic | 35.0% | |
| ! | CGTTGAACATCATTTTCTAC+TGG | - | chr7_1:37640158-37640177 | Msa1017910:intron | 35.0% |
| GTAAAGAGTAGAGAAGGATT+TGG | + | chr7_1:37640226-37640245 | None:intergenic | 35.0% | |
| CAAAAACTATGTATGCACCA+AGG | - | chr7_1:37640291-37640310 | Msa1017910:intron | 35.0% | |
| GTATTTGAATAACGCTTGAG+GGG | - | chr7_1:37640418-37640437 | Msa1017910:intron | 35.0% | |
| ATCTTTCCATTGATACCAAC+TGG | - | chr7_1:37640534-37640553 | Msa1017910:intron | 35.0% | |
| ! | TAATCATGATGTCACTTGGT+AGG | + | chr7_1:37640598-37640617 | None:intergenic | 35.0% |
| AGGTGTTAAATGAAGGAGTT+TGG | - | chr7_1:37640812-37640831 | Msa1017910:intron | 35.0% | |
| ! | TCTATCAAGAAGTGCAGTAA+AGG | - | chr7_1:37640847-37640866 | Msa1017910:intron | 35.0% |
| AATTTCAACTTACAGGTGGA+TGG | - | chr7_1:37640875-37640894 | Msa1017910:CDS | 35.0% | |
| CATTTGCAGAGGAAAATAAC+TGG | - | chr7_1:37640902-37640921 | Msa1017910:CDS | 35.0% | |
| GAGGAAAATAACTGGAAAGT+TGG | - | chr7_1:37640910-37640929 | Msa1017910:CDS | 35.0% | |
| CATTGGAAACTCGTTGGAAA+GGG | + | chr7_1:37639767-37639786 | None:intergenic | 40.0% | |
| !! | ACGTGGTTGATGAAGTTCAA+AGG | + | chr7_1:37639853-37639872 | None:intergenic | 40.0% |
| CTTCATCAACCACGTGAAAT+TGG | - | chr7_1:37639858-37639877 | Msa1017910:CDS | 40.0% | |
| TAGAGTTGGAAAACTGCAGA+AGG | - | chr7_1:37639896-37639915 | Msa1017910:CDS | 40.0% | |
| CATACTGATAGAGAGTCCAA+AGG | - | chr7_1:37639933-37639952 | Msa1017910:CDS | 40.0% | |
| CACTTCTTTCCCTGCAAAAT+TGG | + | chr7_1:37640049-37640068 | None:intergenic | 40.0% | |
| TAGGATTGTCCATTTGAGCT+GGG | + | chr7_1:37640579-37640598 | None:intergenic | 40.0% | |
| CAGAATATACCACGTTCGTT+TGG | - | chr7_1:37640742-37640761 | Msa1017910:intron | 40.0% | |
| TGTCTATTACCAAACGAACG+TGG | + | chr7_1:37640754-37640773 | None:intergenic | 40.0% | |
| CATTGGAAACTCGTTGGAAA+GGG | + | chr7_1:37639767-37639786 | None:intergenic | 40.0% | |
| !! | ACGTGGTTGATGAAGTTCAA+AGG | + | chr7_1:37639853-37639872 | None:intergenic | 40.0% |
| CTTCATCAACCACGTGAAAT+TGG | - | chr7_1:37639858-37639877 | Msa1017910:CDS | 40.0% | |
| TAGAGTTGGAAAACTGCAGA+AGG | - | chr7_1:37639896-37639915 | Msa1017910:CDS | 40.0% | |
| CATACTGATAGAGAGTCCAA+AGG | - | chr7_1:37639933-37639952 | Msa1017910:CDS | 40.0% | |
| CACTTCTTTCCCTGCAAAAT+TGG | + | chr7_1:37640049-37640068 | None:intergenic | 40.0% | |
| TAGGATTGTCCATTTGAGCT+GGG | + | chr7_1:37640579-37640598 | None:intergenic | 40.0% | |
| CAGAATATACCACGTTCGTT+TGG | - | chr7_1:37640742-37640761 | Msa1017910:intron | 40.0% | |
| TGTCTATTACCAAACGAACG+TGG | + | chr7_1:37640754-37640773 | None:intergenic | 40.0% | |
| CCATTGGAAACTCGTTGGAA+AGG | + | chr7_1:37639768-37639787 | None:intergenic | 45.0% | |
| CCTTTCCAACGAGTTTCCAA+TGG | - | chr7_1:37639765-37639784 | Msa1017910:CDS | 45.0% | |
| CTTGACCATTGGAAACTCGT+TGG | + | chr7_1:37639773-37639792 | None:intergenic | 45.0% | |
| CAACGAGTTTCCAATGGTCA+AGG | - | chr7_1:37639771-37639790 | Msa1017910:CDS | 45.0% | |
| CTACTGCTTCCAATTTCACG+TGG | + | chr7_1:37639870-37639889 | None:intergenic | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | + | chr7_1:37640129-37640148 | None:intergenic | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | + | chr7_1:37640133-37640152 | None:intergenic | 45.0% | |
| TTGAATAACGCTTGAGGGGA+TGG | - | chr7_1:37640422-37640441 | Msa1017910:intron | 45.0% | |
| TGAATAACGCTTGAGGGGAT+GGG | - | chr7_1:37640423-37640442 | Msa1017910:intron | 45.0% | |
| ATTTCACAACAGGGACCAGT+TGG | + | chr7_1:37640552-37640571 | None:intergenic | 45.0% | |
| CTGGGCACAATTTCACAACA+GGG | + | chr7_1:37640561-37640580 | None:intergenic | 45.0% | |
| GAAATTGTGCCCAGCTCAAA+TGG | - | chr7_1:37640567-37640586 | Msa1017910:intron | 45.0% | |
| GTAGGATTGTCCATTTGAGC+TGG | + | chr7_1:37640580-37640599 | None:intergenic | 45.0% | |
| ATGAAGGAGTTTGGACTGCA+AGG | - | chr7_1:37640821-37640840 | Msa1017910:intron | 45.0% | |
| TCAACTTACAGGTGGATGGA+AGG | - | chr7_1:37640879-37640898 | Msa1017910:CDS | 45.0% | |
| CCATTGGAAACTCGTTGGAA+AGG | + | chr7_1:37639768-37639787 | None:intergenic | 45.0% | |
| CCTTTCCAACGAGTTTCCAA+TGG | - | chr7_1:37639765-37639784 | Msa1017910:CDS | 45.0% | |
| CTTGACCATTGGAAACTCGT+TGG | + | chr7_1:37639773-37639792 | None:intergenic | 45.0% | |
| CAACGAGTTTCCAATGGTCA+AGG | - | chr7_1:37639771-37639790 | Msa1017910:CDS | 45.0% | |
| CTACTGCTTCCAATTTCACG+TGG | + | chr7_1:37639870-37639889 | None:intergenic | 45.0% | |
| CGCATGACAACAACAAAGGA+TGG | + | chr7_1:37640129-37640148 | None:intergenic | 45.0% | |
| TGCACGCATGACAACAACAA+AGG | + | chr7_1:37640133-37640152 | None:intergenic | 45.0% | |
| TTGAATAACGCTTGAGGGGA+TGG | - | chr7_1:37640422-37640441 | Msa1017910:intron | 45.0% | |
| TGAATAACGCTTGAGGGGAT+GGG | - | chr7_1:37640423-37640442 | Msa1017910:intron | 45.0% | |
| ATTTCACAACAGGGACCAGT+TGG | + | chr7_1:37640552-37640571 | None:intergenic | 45.0% | |
| CTGGGCACAATTTCACAACA+GGG | + | chr7_1:37640561-37640580 | None:intergenic | 45.0% | |
| GAAATTGTGCCCAGCTCAAA+TGG | - | chr7_1:37640567-37640586 | Msa1017910:intron | 45.0% | |
| GTAGGATTGTCCATTTGAGC+TGG | + | chr7_1:37640580-37640599 | None:intergenic | 45.0% | |
| ATGAAGGAGTTTGGACTGCA+AGG | - | chr7_1:37640821-37640840 | Msa1017910:intron | 45.0% | |
| TCAACTTACAGGTGGATGGA+AGG | - | chr7_1:37640879-37640898 | Msa1017910:CDS | 45.0% | |
| ! | CAGGGACCAGTTGGTATCAA+TGG | + | chr7_1:37640543-37640562 | None:intergenic | 50.0% |
| GCTGGGCACAATTTCACAAC+AGG | + | chr7_1:37640562-37640581 | None:intergenic | 50.0% | |
| !! | TGGATGGAAGGCATTTGCAG+AGG | - | chr7_1:37640891-37640910 | Msa1017910:CDS | 50.0% |
| ! | CAGGGACCAGTTGGTATCAA+TGG | + | chr7_1:37640543-37640562 | None:intergenic | 50.0% |
| GCTGGGCACAATTTCACAAC+AGG | + | chr7_1:37640562-37640581 | None:intergenic | 50.0% | |
| !! | TGGATGGAAGGCATTTGCAG+AGG | - | chr7_1:37640891-37640910 | Msa1017910:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 37639756 | 37641050 | 37639756 | ID=Msa1017910;Name=Msa1017910 |
| chr7_1 | mRNA | 37639756 | 37641050 | 37639756 | ID=Msa1017910-mRNA-1;Parent=Msa1017910;Name=Msa1017910-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|1|3|0|208 |
| chr7_1 | exon | 37640852 | 37641050 | 37640852 | ID=Msa1017910-mRNA-1:exon:7254;Parent=Msa1017910-mRNA-1 |
| chr7_1 | exon | 37640627 | 37640748 | 37640627 | ID=Msa1017910-mRNA-1:exon:7253;Parent=Msa1017910-mRNA-1 |
| chr7_1 | exon | 37639756 | 37640061 | 37639756 | ID=Msa1017910-mRNA-1:exon:7252;Parent=Msa1017910-mRNA-1 |
| chr7_1 | CDS | 37640852 | 37641050 | 37640852 | ID=Msa1017910-mRNA-1:cds;Parent=Msa1017910-mRNA-1 |
| chr7_1 | CDS | 37640627 | 37640748 | 37640627 | ID=Msa1017910-mRNA-1:cds;Parent=Msa1017910-mRNA-1 |
| chr7_1 | CDS | 37639756 | 37640061 | 37639756 | ID=Msa1017910-mRNA-1:cds;Parent=Msa1017910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
